Hystricomorpha	ANCESTRAL SPECIES	17	ENSGT00940000155414 #8	ENSGT00940000156345 #9	ENSGT00730000111510	ENSGT00390000009243 #10	ENSGT00530000063975 #11	ENSGT00940000154762.a.b #12	ENSGT00940000162095 #13	ENSGT00390000015880 #14	ENSGT01030000234627.a.a.c #15	ENSGT00390000014737 #16	ENSGT00510000048685 #17	ENSGT00950000183012.B.a #18	ENSGT00940000159210 #19	ENSGT00390000013836 #20	ENSGT00390000002172.A.a #21	ENSGT00940000156831 #22	ENSGT00940000161226 #23	ENSGT00940000158514 #24	ENSGT00940000161467 #25	ENSGT00940000155974 #26	ENSGT00940000153253.b.a.g #27	ENSGT00940000153594.d #28	ENSGT01100000263482.E #29	ENSGT00390000000699 #30	ENSGT00940000156847 #31	ENSGT00390000007848.a #32	ENSGT00390000010113 #33	ENSGT00390000016686.n #34	ENSGT00940000162625 #35	ENSGT00940000155882.a.a	ENSGT00900000142991
Hystricomorpha_a	ANCESTRAL SPECIES	16	ENSGT00940000155414 #8	ENSGT00940000156345 #9	ENSGT00730000111510	ENSGT00390000009243 #10	ENSGT00530000063975 #11	ENSGT00940000154762.a.b #12	ENSGT00940000162095 #13	ENSGT00390000015880 #14	ENSGT01030000234627.a.a.c #15	ENSGT00390000014737 #16	ENSGT00510000048685 #17	ENSGT00950000183012.B.a #18	ENSGT00940000159210 #19	ENSGT00390000013836 #20	ENSGT00390000002172.A.a #21	ENSGT00940000156831 #22	ENSGT00940000161226 #23	ENSGT00940000158514 #24	ENSGT00940000161467 #25	ENSGT00940000155974 #26	ENSGT00940000153253.b.a.g #27	ENSGT00940000153594.d #28	ENSGT01100000263482.E #29	ENSGT00390000000699 #30	ENSGT00940000156847 #31	ENSGT00390000007848.a #32	ENSGT00390000010113 #33	ENSGT00390000016686.n #34	ENSGT00940000162625 #35	ENSGT00940000155882.a.a	ENSGT00900000142991
Hystricomorpha_b	ANCESTRAL SPECIES	38	ENSGT00940000155414 #8	ENSGT00940000156345 #9	ENSGT00730000111510	ENSGT00390000009243 #10	ENSGT00530000063975 #11	ENSGT00940000154762.a.b #12	ENSGT00940000162095 #13	ENSGT00390000015880 #14	ENSGT01030000234627.a.a.c #15	ENSGT00390000014737 #16	ENSGT00510000048685 #17	ENSGT00950000183012.B.a #18	ENSGT00940000159210 #19	ENSGT00390000013836 #20	ENSGT00390000002172.A.a #21	ENSGT00940000156831 #22	ENSGT00940000161226 #23	ENSGT00940000158514 #24	ENSGT00940000161467 #25	ENSGT00940000155974 #26	ENSGT00940000153253.b.a.g #27	ENSGT00940000153594.d #28	ENSGT01100000263482.E #29	ENSGT00390000000699 #30	ENSGT00940000156847 #31	ENSGT00390000007848.a #32	ENSGT00390000010113 #33	ENSGT00390000016686.n #34	ENSGT00940000162625 #35	ENSGT00900000142991	ENSGT00940000155882.a.a
Long-tailed chinchilla	MODERN SPECIES	163	ENSCLAG00000008208 #7	EIF4H (ENSCLAG00000012003) #8	LIMK1 (ENSCLAG00000009497) #9	ENSCLAG00000012225 #10	METTL27 (ENSCLAG00000005194) #11	CLDN4 (ENSCLAG00000017992) #12	CLDN3 (ENSCLAG00000017844) #13	ABHD11 (ENSCLAG00000007679) #14	STX1A (ENSCLAG00000005586) #15	BUD23 (ENSCLAG00000004776) #16	DNAJC30 (ENSCLAG00000006310) #17	VPS37D (ENSCLAG00000006521) #18	MLXIPL (ENSCLAG00000012704) #19	TBL2 (ENSCLAG00000013573) #20	BCL7B (ENSCLAG00000012786) #21	BAZ1B (ENSCLAG00000009400) #22	FZD9 (ENSCLAG00000017759) #23	FKBP6 (ENSCLAG00000006613) #24	TRIM50 (ENSCLAG00000004544) #25	NSUN5 (ENSCLAG00000005624) #26	ENSCLAG00000006542 #27	HIP1 (ENSCLAG00000013745) #28	CCL24 (ENSCLAG00000005258) #29	RHBDD2 (ENSCLAG00000006266) #30	POR (ENSCLAG00000005389) #31	TMEM120A (ENSCLAG00000005891) #32	STYXL1 (ENSCLAG00000006420) #33	MDH2 (ENSCLAG00000006393) #34	SRRM3 (ENSCLAG00000007682) #35	YWHAG (ENSCLAG00000006999) #36	SSC4D (ENSCLAG00000004521) #37
Degu	MODERN SPECIES	76	ENSODEG00000016042 #7	ENSODEG00000015854 #8	LIMK1 (ENSODEG00000015076) #9	ELN (ENSODEG00000016045)	ENSODEG00000015892 #10	METTL27 (ENSODEG00000015241) #11	CLDN4 (ENSODEG00000020405) #12	CLDN3 (ENSODEG00000020387) #13	STX1A (ENSODEG00000015835) #15	BUD23 (ENSODEG00000015372) #16	DNAJC30 (ENSODEG00000015782) #17	ENSODEG00000015421 #18	MLXIPL (ENSODEG00000015218) #19	TBL2 (ENSODEG00000016440) #20	BCL7B (ENSODEG00000015813) #21	BAZ1B (ENSODEG00000015361) #22	FZD9 (ENSODEG00000020544) #23	FKBP6 (ENSODEG00000016257) #24	TRIM50 (ENSODEG00000015712) #25	NSUN5 (ENSODEG00000015132) #26	ENSODEG00000015346 #27	HIP1 (ENSODEG00000016265) #28	CCL24 (ENSODEG00000015142) #29	ENSODEG00000020305	ENSODEG00000015707	ENSODEG00000015918	RHBDD2 (ENSODEG00000016225) #30	POR (ENSODEG00000015517) #31	TMEM120A (ENSODEG00000015559) #32	STYXL1 (ENSODEG00000015904) #33	ENSODEG00000020351
Guinea pig	MODERN SPECIES	30	RFC2 (ENSCPOG00000012351)	LAT2 (ENSCPOG00000022644) #7	EIF4H (ENSCPOG00000019301) #8	LIMK1 (ENSCPOG00000000745) #9	ENSCPOG00000034617	CLDN4 (ENSCPOG00000022400) #12	CLDN3 (ENSCPOG00000008619) #13	ABHD11 (ENSCPOG00000036499) #14	STX1A (ENSCPOG00000003386) #15	BUD23 (ENSCPOG00000026365) #16	DNAJC30 (ENSCPOG00000006476) #17	VPS37D (ENSCPOG00000036296) #18	MLXIPL (ENSCPOG00000010276) #19	TBL2 (ENSCPOG00000030307) #20	BCL7B (ENSCPOG00000015110) #21	BAZ1B (ENSCPOG00000011829) #22	FZD9 (ENSCPOG00000038130) #23	ENSCPOG00000003350 #24	TRIM50 (ENSCPOG00000013325) #25	NSUN5 (ENSCPOG00000023149) #26	ENSCPOG00000008901 #27	HIP1 (ENSCPOG00000006880) #28	RHBDD2 (ENSCPOG00000036336) #30	POR (ENSCPOG00000006202) #31	TMEM120A (ENSCPOG00000006218) #32	STYXL1 (ENSCPOG00000006224) #33	MDH2 (ENSCPOG00000010145) #34	SRRM3 (ENSCPOG00000038685) #35	HSPB1 (ENSCPOG00000033782)	ENSCPOG00000023568	YWHAG (ENSCPOG00000030753) #36