Chordata	ANCESTRAL SPECIES	36															ENSGT01050000244902	ENSGT00390000002554 #22
Vertebrata	ANCESTRAL SPECIES	161														ENSGT01050000244902.a.a.a	ENSGT00390000001546 #21	ENSGT00390000002554 #22
Gnathostomata	ANCESTRAL SPECIES	992														ENSGT01050000244902.a.a.a	ENSGT00390000001546 #21	ENSGT00390000002554 #22
Euteleostomi	ANCESTRAL SPECIES	141												ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00530000063586.a	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00950000183109.c.a.a	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b	ENSGT00940000154418.a.a	ENSGT00940000158034	ENSGT00940000153342.a	ENSGT00940000166377
Sarcopterygii	ANCESTRAL SPECIES	318												ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00530000063586.a	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Tetrapoda	ANCESTRAL SPECIES	39	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT01100000263518.A.b	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00530000063586.a	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000164095	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Amniota	ANCESTRAL SPECIES	10	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT01100000263518.A.b	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00530000063586.a	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000164095	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00990000203892 #35
Mammalia	ANCESTRAL SPECIES	14	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00990000203892 #35	ENSGT00940000154078.a.a
Theria	ANCESTRAL SPECIES	26	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00990000203892 #35	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Eutheria	ANCESTRAL SPECIES	13	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00990000203892 #35	ENSGT00940000154078.a.a
Boreoeutheria	ANCESTRAL SPECIES	16	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT01100000267139 #11	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00960000190004	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00990000203892 #35	ENSGT00940000154078.a.a
Euarchontoglires	ANCESTRAL SPECIES	16	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT01100000267139 #11	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.a.a ##18	ENSGT00960000190004	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00990000203892 #35	ENSGT00940000154078.a.a
Euarchontoglires_A	ANCESTRAL SPECIES	15	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT01100000267139 #11	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00990000203892 #35	ENSGT00940000154078.a.a
Glires	ANCESTRAL SPECIES	16	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT01100000267139 #11	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00990000203892 #35	ENSGT00940000154078.a.a
Rodentia	ANCESTRAL SPECIES	16	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT01100000267139 #11	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00990000203892 #35	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Rodentia_A	ANCESTRAL SPECIES	15	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT01100000267139 #11	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00990000203892 #35	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Sciuridae	ANCESTRAL SPECIES	21	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT01100000267139 #11	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00990000203892 #35	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Marmotini	ANCESTRAL SPECIES	16	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT01100000267139 #11	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00990000203892 #35	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Alpin marmot	MODERN SPECIES	39	ACTR1A (ENSMMMG00000023344) #7	MFSD13A (ENSMMMG00000023338) #8	CUEDC2 (ENSMMMG00000023329) #9	FBXL15 (ENSMMMG00000023324) #10	ENSMMMG00000023323 #11	ENSMMMG00000023315 #12	ENSMMMG00000023312 #13	NFKB2 (ENSMMMG00000023297) #14	GBF1 (ENSMMMG00000023283) #15	PITX3 (ENSMMMG00000023281) #16	ELOVL3 (ENSMMMG00000023279) #17	NOLC1 (ENSMMMG00000023274) #18	PPRC1 (ENSMMMG00000023259) #19	LDB1 (ENSMMMG00000023248) #20	HPS6 (ENSMMMG00000023243) #21	ARMH3 (ENSMMMG00000023233) #22	KCNIP2 (ENSMMMG00000023225) #23	OGA (ENSMMMG00000023220) #24	NPM3 (ENSMMMG00000023217) #25	FGF8 (ENSMMMG00000023215) #26	FBXW4 (ENSMMMG00000023212) #27	DPCD (ENSMMMG00000023210) #28	POLL (ENSMMMG00000023200) #29	BTRC (ENSMMMG00000023182) #30	LBX1 (ENSMMMG00000023177) #31	ENSMMMG00000023172 #32	KAZALD1 (ENSMMMG00000023167) #33	SFXN3 (ENSMMMG00000023149) #34	ENSMMMG00000023146 #35	ENSMMMG00000023144 #36	ENSMMMG00000023099 #37
Marmotini_b	ANCESTRAL SPECIES	76	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Squirrel	MODERN SPECIES	200	SUFU (ENSSTOG00000026796)	ACTR1A (ENSSTOG00000014434) #7	MFSD13A (ENSSTOG00000014428) #8	CUEDC2 (ENSSTOG00000022008) #9	FBXL15 (ENSSTOG00000022528) #10	PSD (ENSSTOG00000021577) #12	NFKB2 (ENSSTOG00000002191) #14	GBF1 (ENSSTOG00000002171) #15	PITX3 (ENSSTOG00000015025) #16	ELOVL3 (ENSSTOG00000015013) #17	NOLC1 (ENSSTOG00000002168) #18	ENSSTOG00000002156 #19	ENSSTOG00000034359 #19	LDB1 (ENSSTOG00000002139) #20	HPS6 (ENSSTOG00000024918) #21	ARMH3 (ENSSTOG00000015633) #22	KCNIP2 (ENSSTOG00000021030) #23	ENSSTOG00000032901 #24	NPM3 (ENSSTOG00000022621) #25	FGF8 (ENSSTOG00000023351) #26	FBXW4 (ENSSTOG00000011495) #27	DPCD (ENSSTOG00000011490) #28	POLL (ENSSTOG00000011485) #29	BTRC (ENSSTOG00000022481) #30	LBX1 (ENSSTOG00000006491) #31	ENSSTOG00000023842 #32	KAZALD1 (ENSSTOG00000015240) #33	SFXN3 (ENSSTOG00000026614) #34	PDZD7 (ENSSTOG00000009046) #36	LZTS2 (ENSSTOG00000015232)	TWNK (ENSSTOG00000009030)
Arctic ground squirrel	MODERN SPECIES	373												NOLC1 (ENSUPAG00010009783) #18	PPRC1 (ENSUPAG00010009814) #19	ENSUPAG00010009826 #20	HPS6 (ENSUPAG00010009845) #21	ARMH3 (ENSUPAG00010009848) #22	KCNIP2 (ENSUPAG00010009866) #23	OGA (ENSUPAG00010010052) #24	NPM3 (ENSUPAG00010010073) #25	FGF8 (ENSUPAG00010010083) #26	FBXW4 (ENSUPAG00010010202) #27	DPCD (ENSUPAG00010010220) #28	POLL (ENSUPAG00010010241) #29	BTRC (ENSUPAG00010010245) #30	ENSUPAG00010010321	LBX1 (ENSUPAG00010010328) #31	TLX1 (ENSUPAG00010010336) #32	KAZALD1 (ENSUPAG00010010340) #33	SFXN3 (ENSUPAG00010010359) #34	ENSUPAG00010010444 #36	ENSUPAG00010010561 #36
Eurasian red squirrel	MODERN SPECIES	13	TRIM8 (ENSSVLG00005003874)	ENSSVLG00005003897	ACTR1A (ENSSVLG00005003935) #7	MFSD13A (ENSSVLG00005003972) #8	CUEDC2 (ENSSVLG00005004017) #9	FBXL15 (ENSSVLG00005004039) #10	PSD (ENSSVLG00005004064) #12	NFKB2 (ENSSVLG00005004099) #14	GBF1 (ENSSVLG00005004145) #15	PITX3 (ENSSVLG00005004181) #16	ELOVL3 (ENSSVLG00005004199) #17	NOLC1 (ENSSVLG00005004225) #18	PPRC1 (ENSSVLG00005004252) #19	LDB1 (ENSSVLG00005004323) #20	HPS6 (ENSSVLG00005004366) #21	ARMH3 (ENSSVLG00005004399) #22	KCNIP2 (ENSSVLG00005004570) #23	OGA (ENSSVLG00005004824) #24	FGF8 (ENSSVLG00005005038) #26	FBXW4 (ENSSVLG00005005056) #27	DPCD (ENSSVLG00005005104) #28	POLL (ENSSVLG00005005135) #29	BTRC (ENSSVLG00005005205) #30	LBX1 (ENSSVLG00005005245) #31	TLX1 (ENSSVLG00005005266) #32	KAZALD1 (ENSSVLG00005005289) #33	SFXN3 (ENSSVLG00005005315) #34	PDZD7 (ENSSVLG00005005347) #36	LZTS2 (ENSSVLG00005005380)	TWNK (ENSSVLG00005005412)	MRPL43 (ENSSVLG00005005460)
Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Hystricomorpha_a	ANCESTRAL SPECIES	3	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Hystricomorpha_b	ANCESTRAL SPECIES	14	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Long-tailed chinchilla	MODERN SPECIES	192	TRIM8 (ENSCLAG00000001092)	SUFU (ENSCLAG00000001257)	ACTR1A (ENSCLAG00000001321) #7	MFSD13A (ENSCLAG00000001530) #8	CUEDC2 (ENSCLAG00000001551) #9	FBXL15 (ENSCLAG00000001578) #10	PSD (ENSCLAG00000003741) #12	NFKB2 (ENSCLAG00000004104) #14	GBF1 (ENSCLAG00000004338) #15	PITX3 (ENSCLAG00000005073) #16	ELOVL3 (ENSCLAG00000005342) #17	NOLC1 (ENSCLAG00000001046) #18	PPRC1 (ENSCLAG00000001364) #19	LDB1 (ENSCLAG00000001555) #20	HPS6 (ENSCLAG00000001624) #21	ARMH3 (ENSCLAG00000001673) #22	KCNIP2 (ENSCLAG00000000954) #23	OGA (ENSCLAG00000001003) #24	FGF8 (ENSCLAG00000001075) #26	FBXW4 (ENSCLAG00000001132) #27	DPCD (ENSCLAG00000001147) #28	POLL (ENSCLAG00000001165) #29	BTRC (ENSCLAG00000001243) #30	LBX1 (ENSCLAG00000001298) #31	ENSCLAG00000001309 #32	ENSCLAG00000001318 #33	SFXN3 (ENSCLAG00000001996) #34	PDZD7 (ENSCLAG00000003178) #36	LZTS2 (ENSCLAG00000003292)	TWNK (ENSCLAG00000003486)	MRPL43 (ENSCLAG00000003510)
Degu	MODERN SPECIES	83	MFSD13A (ENSODEG00000008625) #8	CUEDC2 (ENSODEG00000007262) #9	FBXL15 (ENSODEG00000007513) #10	PSD (ENSODEG00000006424) #12	NFKB2 (ENSODEG00000007396) #14	ENSODEG00000006690	GBF1 (ENSODEG00000007076) #15	PITX3 (ENSODEG00000007162) #16	ELOVL3 (ENSODEG00000006606) #17	NOLC1 (ENSODEG00000006304) #18	ENSODEG00000006985 #19	ENSODEG00000009568 #19	LDB1 (ENSODEG00000009090) #20	HPS6 (ENSODEG00000007638) #21	ENSODEG00000019424	ARMH3 (ENSODEG00000007299) #22	ENSODEG00000010569	KCNIP2 (ENSODEG00000007199) #23	ENSODEG00000019634	OGA (ENSODEG00000008001) #24	NPM3 (ENSODEG00000006704) #25	FGF8 (ENSODEG00000006423) #26	FBXW4 (ENSODEG00000007897) #27	DPCD (ENSODEG00000005983) #28	POLL (ENSODEG00000007469) #29	BTRC (ENSODEG00000008464) #30	LBX1 (ENSODEG00000006684) #31	ENSODEG00000006094 #32	KAZALD1 (ENSODEG00000005804) #33	SFXN3 (ENSODEG00000007542) #34	PDZD7 (ENSODEG00000006718) #36
Guinea pig	MODERN SPECIES	11	TRIM8 (ENSCPOG00000012305)	SUFU (ENSCPOG00000011097)	ACTR1A (ENSCPOG00000011090) #7	MFSD13A (ENSCPOG00000011087) #8	CUEDC2 (ENSCPOG00000032492) #9	FBXL15 (ENSCPOG00000021451) #10	PSD (ENSCPOG00000000156) #12	NFKB2 (ENSCPOG00000004847) #14	GBF1 (ENSCPOG00000004514) #15	PITX3 (ENSCPOG00000036365) #16	ELOVL3 (ENSCPOG00000014884) #17	NOLC1 (ENSCPOG00000004504) #18	PPRC1 (ENSCPOG00000032149) #19	LDB1 (ENSCPOG00000010311) #20	HPS6 (ENSCPOG00000006084) #21	ARMH3 (ENSCPOG00000031847) #22	KCNIP2 (ENSCPOG00000011918) #23	OGA (ENSCPOG00000000219) #24	NPM3 (ENSCPOG00000006301) #25	FGF8 (ENSCPOG00000021533) #26	ENSCPOG00000032448 #27	DPCD (ENSCPOG00000005499) #28	POLL (ENSCPOG00000005493) #29	BTRC (ENSCPOG00000005488) #30	LBX1 (ENSCPOG00000025830) #31	TLX1 (ENSCPOG00000003194) #32	KAZALD1 (ENSCPOG00000015270) #33	SFXN3 (ENSCPOG00000000955) #34	ENSCPOG00000000952 #36	LZTS2 (ENSCPOG00000035545)	TWNK (ENSCPOG00000000950)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	4	ACTR1A (ENSHGLG00000044976) #7	MFSD13A (ENSHGLG00000003127) #8	ENSHGLG00000041712	CUEDC2 (ENSHGLG00000002956) #9	FBXL15 (ENSHGLG00000002839) #10	PSD (ENSHGLG00000002612) #12	GBF1 (ENSHGLG00000002115) #15	ENSHGLG00000042455 #15	PITX3 (ENSHGLG00000001851) #16	ELOVL3 (ENSHGLG00000003511) #17	ENSHGLG00000049553	NOLC1 (ENSHGLG00000003156) #18	PPRC1 (ENSHGLG00000002783) #19	LDB1 (ENSHGLG00000002254) #20	HPS6 (ENSHGLG00000020621) #21	ARMH3 (ENSHGLG00000002014) #22	ENSHGLG00000043110 #22	KCNIP2 (ENSHGLG00000019185) #23	OGA (ENSHGLG00000019033) #24	NPM3 (ENSHGLG00000049984) #25	FGF8 (ENSHGLG00000013482) #26	FBXW4 (ENSHGLG00000018911) #27	DPCD (ENSHGLG00000019507) #28	POLL (ENSHGLG00000019504) #29	ENSHGLG00000002588 #30	ENSHGLG00000019498	LBX1 (ENSHGLG00000047414) #31	TLX1 (ENSHGLG00000001823) #32	KAZALD1 (ENSHGLG00000002854) #33	SFXN3 (ENSHGLG00000002107) #34	PDZD7 (ENSHGLG00000046047) #36
Naked mole-rat female	MODERN SPECIES	4	MFSD13A (ENSHGLG00000003127) #8	ENSHGLG00000041712	CUEDC2 (ENSHGLG00000002956) #9	FBXL15 (ENSHGLG00000002839) #10	PSD (ENSHGLG00000002612) #12	GBF1 (ENSHGLG00000002115) #15	ENSHGLG00000042455 #15	PITX3 (ENSHGLG00000001851) #16	ELOVL3 (ENSHGLG00000003511) #17	ENSHGLG00000049553	NOLC1 (ENSHGLG00000003156) #18	PPRC1 (ENSHGLG00000002783) #19	LDB1 (ENSHGLG00000002254) #20	HPS6 (ENSHGLG00000020621) #21	ARMH3 (ENSHGLG00000002014) #22	ENSHGLG00000043110 #22	KCNIP2 (ENSHGLG00000019185) #23	OGA (ENSHGLG00000019033) #24	NPM3 (ENSHGLG00000049984) #25	FGF8 (ENSHGLG00000013482) #26	FBXW4 (ENSHGLG00000018911) #27	DPCD (ENSHGLG00000019507) #28	POLL (ENSHGLG00000019504) #29	ENSHGLG00000002588 #30	ENSHGLG00000019498	LBX1 (ENSHGLG00000047414) #31	TLX1 (ENSHGLG00000001823) #32	KAZALD1 (ENSHGLG00000002854) #33	SFXN3 (ENSHGLG00000002107) #34	PDZD7 (ENSHGLG00000046047) #36	ENSHGLG00000035111 #36
Rodentia_B	ANCESTRAL SPECIES	10	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00990000203892 #35	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Myomorpha	ANCESTRAL SPECIES	1	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00990000203892 #35	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Muroidea	ANCESTRAL SPECIES	1	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00990000203892 #35	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Muroidea_A	ANCESTRAL SPECIES		ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00990000203892 #35	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00990000203892 #35	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Cricetinae	ANCESTRAL SPECIES	2	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Golden Hamster	MODERN SPECIES	617	Trim8 (ENSMAUG00000015163)	Sufu (ENSMAUG00000017018)	ENSMAUG00000017290 #7	Mfsd13a (ENSMAUG00000014106) #8	Cuedc2 (ENSMAUG00000015254) #9	Fbxl15 (ENSMAUG00000015625) #10	Psd (ENSMAUG00000017086) #12	Nfkb2 (ENSMAUG00000016292) #14	ENSMAUG00000017130 #15	ENSMAUG00000017791 #15	Pitx3 (ENSMAUG00000015434) #16	Elovl3 (ENSMAUG00000013792) #17	Pprc1 (ENSMAUG00000016674) #19	Ldb1 (ENSMAUG00000018515) #20	Hps6 (ENSMAUG00000002039) #21	Armh3 (ENSMAUG00000019449) #22	Kcnip2 (ENSMAUG00000019652) #23	Oga (ENSMAUG00000015052) #24	Npm3 (ENSMAUG00000015218) #25	Fgf8 (ENSMAUG00000016383) #26	ENSMAUG00000015569	ENSMAUG00000015787 #27	Dpcd (ENSMAUG00000017884) #28	Poll (ENSMAUG00000014674) #29	Btrc (ENSMAUG00000016001) #30	Lbx1 (ENSMAUG00000015198) #31	Tlx1 (ENSMAUG00000015538) #32	Kazald1 (ENSMAUG00000017475) #33	Sfxn3 (ENSMAUG00000017975) #34	ENSMAUG00000015875 #36	Lzts2 (ENSMAUG00000018041)
Chinese hamster chok1gshd	MODERN SPECIES	215	Trim8 (ENSCGRG00001024342)	Sufu (ENSCGRG00001006263)	Actr1a (ENSCGRG00001013578) #7	Mfsd13a (ENSCGRG00001017917) #8	Fbxl15 (ENSCGRG00001022005) #10	Cuedc2 (ENSCGRG00001022970) #9	Psd (ENSCGRG00001000373) #12	Nfkb2 (ENSCGRG00001009030) #14	Gbf1 (ENSCGRG00001022494) #15	Pitx3 (ENSCGRG00001024147) #16	ELOVL3 (ENSCGRG00001005008) #17	Nolc1 (ENSCGRG00001009806) #18	Pprc1 (ENSCGRG00001011726) #19	Ldb1 (ENSCGRG00001020743) #20	Hps6 (ENSCGRG00001010957) #21	Armh3 (ENSCGRG00001015570) #22	Kcnip2 (ENSCGRG00001019478) #23	Oga (ENSCGRG00001020553) #24	Npm3 (ENSCGRG00001013345) #25	Fgf8 (ENSCGRG00001015246) #26	Fbxw4 (ENSCGRG00001003996) #27	Dpcd (ENSCGRG00001005917) #28	Poll (ENSCGRG00001010513) #29	Btrc (ENSCGRG00001015459) #30	Lbx1 (ENSCGRG00001017540) #31	Tlx1 (ENSCGRG00001021053) #32	Kazald1 (ENSCGRG00001000227) #33	Sfxn3 (ENSCGRG00001015591) #34	Pdzd7 (ENSCGRG00001017672) #36	Lzts2 (ENSCGRG00001023049)	Twnk (ENSCGRG00001000710)
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00990000203892 #35	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Prairie vole	MODERN SPECIES	16	Sufu (ENSMOCG00000016812)	Actr1a (ENSMOCG00000020878) #7	Mfsd13a (ENSMOCG00000018673) #8	Cuedc2 (ENSMOCG00000001067) #9	Fbxl15 (ENSMOCG00000022420) #10	Psd (ENSMOCG00000014904) #12	Nfkb2 (ENSMOCG00000011590) #14	Gbf1 (ENSMOCG00000022834) #15	Pitx3 (ENSMOCG00000012980) #16	Elovl3 (ENSMOCG00000022790) #17	Nolc1 (ENSMOCG00000015232) #18	ENSMOCG00000018283 #19	ENSMOCG00000014044 #19	ENSMOCG00000004202 #20	Hps6 (ENSMOCG00000001347) #21	Armh3 (ENSMOCG00000011932) #22	Kcnip2 (ENSMOCG00000022254) #23	Oga (ENSMOCG00000014392) #24	Npm3 (ENSMOCG00000013601) #25	Fgf8 (ENSMOCG00000021407) #26	Fbxw4 (ENSMOCG00000013178) #27	Dpcd (ENSMOCG00000013756) #28	Poll (ENSMOCG00000006566) #29	Btrc (ENSMOCG00000002451) #30	Lbx1 (ENSMOCG00000018337) #31	Tlx1 (ENSMOCG00000017096) #32	Kazald1 (ENSMOCG00000015994) #33	Sfxn3 (ENSMOCG00000022608) #34	ENSMOCG00000019069 #36	ENSMOCG00000014095 #36	Lzts2 (ENSMOCG00000012162)
Northern American deer mouse	MODERN SPECIES		Trim8 (ENSPEMG00000027998)	Sufu (ENSPEMG00000009470)	Actr1a (ENSPEMG00000006737) #7	Mfsd13a (ENSPEMG00000016696) #8	Cuedc2 (ENSPEMG00000012762) #9	Fbxl15 (ENSPEMG00000012550) #10	Psd (ENSPEMG00000010757) #12	Nfkb2 (ENSPEMG00000014947) #14	Gbf1 (ENSPEMG00000018772) #15	Pitx3 (ENSPEMG00000026373) #16	Elovl3 (ENSPEMG00000000778) #17	ENSPEMG00000026626	Pprc1 (ENSPEMG00000016590) #19	Ldb1 (ENSPEMG00000011489) #20	Hps6 (ENSPEMG00000003992) #21	Armh3 (ENSPEMG00000014466) #22	Kcnip2 (ENSPEMG00000015045) #23	Oga (ENSPEMG00000008883) #24	Npm3 (ENSPEMG00000007731) #25	Fgf8 (ENSPEMG00000012905) #26	Fbxw4 (ENSPEMG00000024901) #27	Dpcd (ENSPEMG00000014479) #28	Poll (ENSPEMG00000006876) #29	Btrc (ENSPEMG00000014260) #30	Lbx1 (ENSPEMG00000026119) #31	Tlx1 (ENSPEMG00000016966) #32	Kazald1 (ENSPEMG00000018686) #33	Sfxn3 (ENSPEMG00000012869) #34	ENSPEMG00000030678 #35	Pdzd7 (ENSPEMG00000004000) #36	Lzts2 (ENSPEMG00000013419)
Murinae	ANCESTRAL SPECIES		ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801.d #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00990000203892 #35	ENSGT00940000154078.a.a
Mus	ANCESTRAL SPECIES		ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801.d #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00990000203892 #35	ENSGT00940000154078.a.a
Mus_A	ANCESTRAL SPECIES	16	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801.d #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a.p #34	ENSGT00950000183002.C #36	ENSGT00990000203892 #35	ENSGT00940000154078.a.a
Mus_B	ANCESTRAL SPECIES	16	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801.d #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a.p #34	ENSGT00950000183002.C #36	ENSGT00990000203892 #35	ENSGT00940000154078.a.a
Mus_C	ANCESTRAL SPECIES	24	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801.d #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a.p #34	ENSGT00950000183002.C #36	ENSGT00990000203892 #35	ENSGT00940000154078.a.a
spretus	MODERN SPECIES	10	Trim8 (MGP_SPRETEiJ_G0023959)	Sufu (MGP_SPRETEiJ_G0023958)	Actr1a (MGP_SPRETEiJ_G0023957) #7	Mfsd13a (MGP_SPRETEiJ_G0023956) #8	Cuedc2 (MGP_SPRETEiJ_G0023955) #9	Fbxl15 (MGP_SPRETEiJ_G0023954) #10	Psd (MGP_SPRETEiJ_G0023953) #12	Nfkb2 (MGP_SPRETEiJ_G0023952) #14	Gbf1 (MGP_SPRETEiJ_G0023951) #15	Pitx3 (MGP_SPRETEiJ_G0023950) #16	Elovl3 (MGP_SPRETEiJ_G0023949) #17	Nolc1 (MGP_SPRETEiJ_G0023948) #18	Pprc1 (MGP_SPRETEiJ_G0023947) #19	Ldb1 (MGP_SPRETEiJ_G0023946) #20	Hps6 (MGP_SPRETEiJ_G0023945) #21	Armh3 (MGP_SPRETEiJ_G0023944) #22	Kcnip2 (MGP_SPRETEiJ_G0023943) #23	Oga (MGP_SPRETEiJ_G0023942) #24	Npm3 (MGP_SPRETEiJ_G0023941) #25	Fgf8 (MGP_SPRETEiJ_G0023940) #26	MGP_SPRETEiJ_G0023939 #27	Dpcd (MGP_SPRETEiJ_G0023938) #28	Poll (MGP_SPRETEiJ_G0023937) #29	Btrc (MGP_SPRETEiJ_G0023936) #30	Lbx1 (MGP_SPRETEiJ_G0023935) #31	Tlx1 (MGP_SPRETEiJ_G0023934) #32	Kazald1 (MGP_SPRETEiJ_G0023933) #33	Sfxn3 (MGP_SPRETEiJ_G0023932) #34	Pdzd7 (MGP_SPRETEiJ_G0023931) #36	Lzts2 (MGP_SPRETEiJ_G0023930)	Twnk (MGP_SPRETEiJ_G0023929)
Steppe mouse	MODERN SPECIES	3317	Sufu (ENSMSIG00000011215)	Actr1a (ENSMSIG00000011269) #7	Mfsd13a (ENSMSIG00000011296) #8	2310034G01Rik (ENSMSIG00000011343)	Cuedc2 (ENSMSIG00000011362) #9	Fbxl15 (ENSMSIG00000011465) #10	Psd (ENSMSIG00000011495) #12	Nfkb2 (ENSMSIG00000011557) #14	Gbf1 (ENSMSIG00000011585) #15	Pitx3 (ENSMSIG00000011679) #16	Elovl3 (ENSMSIG00000011691) #17	Nolc1 (ENSMSIG00000011702) #18	Pprc1 (ENSMSIG00000011750) #19	Ldb1 (ENSMSIG00000011766) #20	Hps6 (ENSMSIG00000011802) #21	Armh3 (ENSMSIG00000011813) #22	ENSMSIG00000011884 #23	Oga (ENSMSIG00000012429) #24	Npm3 (ENSMSIG00000012497) #25	Fgf8 (ENSMSIG00000012521) #26	ENSMSIG00000012591 #27	ENSMSIG00000012629 #28	Poll (ENSMSIG00000012645) #29	Btrc (ENSMSIG00000012680) #30	Lbx1 (ENSMSIG00000012769) #31	Tlx1 (ENSMSIG00000012781) #32	Kazald1 (ENSMSIG00000012802) #33	Sfxn3 (ENSMSIG00000012828) #34	Pdzd7 (ENSMSIG00000012912) #36	ENSMSIG00000012980 #35	Lzts2 (ENSMSIG00000012984)
Mouse	MODERN SPECIES	10	Sufu (ENSMUSG00000025231)	Actr1a (ENSMUSG00000025228) #7	2310034G01Rik (ENSMUSG00000099655)	Mfsd13a (ENSMUSG00000025227) #8	Cuedc2 (ENSMUSG00000036748) #9	Fbxl15 (ENSMUSG00000025226) #10	Psd (ENSMUSG00000037126) #12	Nfkb2 (ENSMUSG00000025225) #14	Gbf1 (ENSMUSG00000025224) #15	Pitx3 (ENSMUSG00000025229) #16	Elovl3 (ENSMUSG00000038754) #17	Nolc1 (ENSMUSG00000015176) #18	Pprc1 (ENSMUSG00000055491) #19	Ldb1 (ENSMUSG00000025223) #20	Hps6 (ENSMUSG00000074811) #21	Armh3 (ENSMUSG00000039901) #22	Kcnip2 (ENSMUSG00000025221) #23	Oga (ENSMUSG00000025220) #24	Npm3 (ENSMUSG00000056209) #25	Fgf8 (ENSMUSG00000025219) #26	Fbxw4 (ENSMUSG00000040913) #27	Dpcd (ENSMUSG00000041035) #28	Poll (ENSMUSG00000025218) #29	Btrc (ENSMUSG00000025217) #30	Lbx1 (ENSMUSG00000025216) #31	Tlx1 (ENSMUSG00000025215) #32	Kazald1 (ENSMUSG00000025213) #33	Sfxn3 (ENSMUSG00000025212) #34	Pdzd7 (ENSMUSG00000074818) #36	Lzts2 (ENSMUSG00000035342)	Twnk (ENSMUSG00000025209)
Ryukyu mouse	MODERN SPECIES	10	Trim8 (MGP_CAROLIEiJ_G0023038)	Sufu (MGP_CAROLIEiJ_G0023037)	Actr1a (MGP_CAROLIEiJ_G0023036) #7	Mfsd13a (MGP_CAROLIEiJ_G0023035) #8	Cuedc2 (MGP_CAROLIEiJ_G0023034) #9	Fbxl15 (MGP_CAROLIEiJ_G0023033) #10	Psd (MGP_CAROLIEiJ_G0023032) #12	Nfkb2 (MGP_CAROLIEiJ_G0023031) #14	Gbf1 (MGP_CAROLIEiJ_G0023030) #15	Pitx3 (MGP_CAROLIEiJ_G0023029) #16	Elovl3 (MGP_CAROLIEiJ_G0023028) #17	Nolc1 (MGP_CAROLIEiJ_G0023027) #18	Pprc1 (MGP_CAROLIEiJ_G0023026) #19	Ldb1 (MGP_CAROLIEiJ_G0023025) #20	Hps6 (MGP_CAROLIEiJ_G0023024) #21	Armh3 (MGP_CAROLIEiJ_G0023023) #22	Kcnip2 (MGP_CAROLIEiJ_G0023022) #23	Oga (MGP_CAROLIEiJ_G0023021) #24	Npm3 (MGP_CAROLIEiJ_G0023020) #25	Fgf8 (MGP_CAROLIEiJ_G0023019) #26	Fbxw4 (MGP_CAROLIEiJ_G0023018) #27	Dpcd (MGP_CAROLIEiJ_G0023017) #28	Poll (MGP_CAROLIEiJ_G0023016) #29	Btrc (MGP_CAROLIEiJ_G0023015) #30	Lbx1 (MGP_CAROLIEiJ_G0023014) #31	Tlx1 (MGP_CAROLIEiJ_G0023013) #32	Kazald1 (MGP_CAROLIEiJ_G0023012) #33	Sfxn3 (MGP_CAROLIEiJ_G0023011) #34	Pdzd7 (MGP_CAROLIEiJ_G0023010) #36	Lzts2 (MGP_CAROLIEiJ_G0023009)	Twnk (MGP_CAROLIEiJ_G0023008)
Shrew mouse	MODERN SPECIES		Trim8 (MGP_PahariEiJ_G0014528)	Sufu (MGP_PahariEiJ_G0014527)	Actr1a (MGP_PahariEiJ_G0014526) #7	Mfsd13a (MGP_PahariEiJ_G0014525) #8	Cuedc2 (MGP_PahariEiJ_G0014524) #9	Fbxl15 (MGP_PahariEiJ_G0014523) #10	Psd (MGP_PahariEiJ_G0014522) #12	Nfkb2 (MGP_PahariEiJ_G0014521) #14	Gbf1 (MGP_PahariEiJ_G0014520) #15	Pitx3 (MGP_PahariEiJ_G0014519) #16	Elovl3 (MGP_PahariEiJ_G0014518) #17	Nolc1 (MGP_PahariEiJ_G0014517) #18	Pprc1 (MGP_PahariEiJ_G0014516) #19	Ldb1 (MGP_PahariEiJ_G0014515) #20	Hps6 (MGP_PahariEiJ_G0014514) #21	Armh3 (MGP_PahariEiJ_G0014513) #22	Kcnip2 (MGP_PahariEiJ_G0014512) #23	Oga (MGP_PahariEiJ_G0014511) #24	Npm3 (MGP_PahariEiJ_G0014510) #25	Fgf8 (MGP_PahariEiJ_G0014509) #26	MGP_PahariEiJ_G0014508 #27	Dpcd (MGP_PahariEiJ_G0014507) #28	Poll (MGP_PahariEiJ_G0014506) #29	Btrc (MGP_PahariEiJ_G0014505) #30	Lbx1 (MGP_PahariEiJ_G0014504) #31	Tlx1 (MGP_PahariEiJ_G0014503) #32	Kazald1 (MGP_PahariEiJ_G0014502) #33	Sfxn3 (MGP_PahariEiJ_G0014501) #34	Pdzd7 (MGP_PahariEiJ_G0014500) #36	MGP_PahariEiJ_G0014499	Twnk (MGP_PahariEiJ_G0014498)
Rat	MODERN SPECIES		Sufu (ENSRNOG00000019807)	Actr1a (ENSRNOG00000019725) #7	Mfsd13a (ENSRNOG00000019674) #8	C1H10orf95 (ENSRNOG00000066499)	Cuedc2 (ENSRNOG00000019574) #9	Fbxl15 (ENSRNOG00000019509) #10	Psd (ENSRNOG00000019435) #12	Nfkb2 (ENSRNOG00000019311) #14	Gbf1 (ENSRNOG00000026048) #15	Pitx3 (ENSRNOG00000019194) #16	Elovl3 (ENSRNOG00000019124) #17	Nolc1 (ENSRNOG00000018704) #18	Pprc1 (ENSRNOG00000018561) #19	Ldb1 (ENSRNOG00000018468) #20	Hps6 (ENSRNOG00000018433) #21	Armh3 (ENSRNOG00000025523) #22	Kcnip2 (ENSRNOG00000018018) #23	Oga (ENSRNOG00000017822) #24	Npm3 (ENSRNOG00000017622) #25	Fgf8 (ENSRNOG00000017524) #26	Fbxw4 (ENSRNOG00000046211) #27	Dpcd (ENSRNOG00000017241) #28	Poll (ENSRNOG00000016748) #29	Btrc (ENSRNOG00000016280) #30	Lbx1 (ENSRNOG00000025520) #31	Tlx1 (ENSRNOG00000016120) #32	Kazald1 (ENSRNOG00000016058) #33	Sfxn3 (ENSRNOG00000015442) #34	Pdzd7 (ENSRNOG00000032946) #36	Lzts2 (ENSRNOG00000014969)	Twnk (ENSRNOG00000014935)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1300	Sufu (ENSNGAG00000022855)	Actr1a (ENSNGAG00000012852) #7	Mfsd13a (ENSNGAG00000010719) #8	Cuedc2 (ENSNGAG00000021332) #9	Fbxl15 (ENSNGAG00000011400) #10	Psd (ENSNGAG00000011541) #12	Nfkb2 (ENSNGAG00000022988) #14	Gbf1 (ENSNGAG00000006095) #15	Pitx3 (ENSNGAG00000021500) #16	Elovl3 (ENSNGAG00000013825) #17	Nolc1 (ENSNGAG00000024139) #18	Pprc1 (ENSNGAG00000016516) #19	Ldb1 (ENSNGAG00000024157) #20	ENSNGAG00000021169	Hps6 (ENSNGAG00000012214) #21	Armh3 (ENSNGAG00000023147) #22	Kcnip2 (ENSNGAG00000024132) #23	Oga (ENSNGAG00000011804) #24	ENSNGAG00000022833 #25	Fgf8 (ENSNGAG00000018999) #26	Fbxw4 (ENSNGAG00000022749) #27	Dpcd (ENSNGAG00000015959) #28	Poll (ENSNGAG00000021402) #29	Btrc (ENSNGAG00000001803) #30	ENSNGAG00000023625	Lbx1 (ENSNGAG00000023979) #31	Tlx1 (ENSNGAG00000024255) #32	Kazald1 (ENSNGAG00000011414) #33	Sfxn3 (ENSNGAG00000017442) #34	ENSNGAG00000004602 #36	Lzts2 (ENSNGAG00000023942)
Lesser Egyptian jerboa	MODERN SPECIES	70	Mfsd13a (ENSJJAG00000019354) #8	Cuedc2 (ENSJJAG00000019898) #9	Fbxl15 (ENSJJAG00000018833) #10	Psd (ENSJJAG00000020932) #12	Nfkb2 (ENSJJAG00000011519) #14	ENSJJAG00000018772	ENSJJAG00000010788 #15	ENSJJAG00000023637 #15	Pitx3 (ENSJJAG00000020721) #16	Elovl3 (ENSJJAG00000020437) #17	Nolc1 (ENSJJAG00000021131) #18	ENSJJAG00000005177 #19	ENSJJAG00000024088 #19	Ldb1 (ENSJJAG00000012307) #20	Hps6 (ENSJJAG00000011662) #21	Armh3 (ENSJJAG00000018861) #22	Kcnip2 (ENSJJAG00000019358) #23	Oga (ENSJJAG00000020565) #24	Npm3 (ENSJJAG00000018907) #25	Fgf8 (ENSJJAG00000014440) #26	ENSJJAG00000016263 #27	Dpcd (ENSJJAG00000010119) #28	Poll (ENSJJAG00000024104) #29	Btrc (ENSJJAG00000011813) #30	Lbx1 (ENSJJAG00000021756) #31	ENSJJAG00000006430 #32	Kazald1 (ENSJJAG00000021687) #33	Sfxn3 (ENSJJAG00000016145) #34	ENSJJAG00000014285 #36	Lzts2 (ENSJJAG00000015056)	ENSJJAG00000006388
Kangaroo rat	MODERN SPECIES	355	Actr1a (ENSDORG00000027112) #7	Mfsd13a (ENSDORG00000013635) #8	Cuedc2 (ENSDORG00000013412) #9	Fbxl15 (ENSDORG00000013411) #10	Psd (ENSDORG00000013410) #12	Nfkb2 (ENSDORG00000013409) #14	ENSDORG00000013406 #15	ENSDORG00000024842 #15	Pitx3 (ENSDORG00000023993) #16	Elovl3 (ENSDORG00000027255) #17	Nolc1 (ENSDORG00000001056) #18	Pprc1 (ENSDORG00000001046) #19	Ldb1 (ENSDORG00000003498) #20	Hps6 (ENSDORG00000028123) #21	ENSDORG00000023337	Armh3 (ENSDORG00000003496) #22	Kcnip2 (ENSDORG00000003495) #23	Oga (ENSDORG00000003493) #24	Npm3 (ENSDORG00000003491) #25	Fgf8 (ENSDORG00000029227) #26	Fbxw4 (ENSDORG00000014212) #27	Dpcd (ENSDORG00000014209) #28	Poll (ENSDORG00000024173) #29	Btrc (ENSDORG00000014204) #30	Lbx1 (ENSDORG00000029567) #31	ENSDORG00000025952 #32	Kazald1 (ENSDORG00000016417) #33	Sfxn3 (ENSDORG00000016415) #34	ENSDORG00000016413 #36	Lzts2 (ENSDORG00000016411)	Twnk (ENSDORG00000004461)
Lagomorpha	ANCESTRAL SPECIES	17	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00940000166473	ENSGT00500000045093	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.a.a ##18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Pika	MODERN SPECIES	102											PITX3 (ENSOPRG00000009418) #16	ELOVL3 (ENSOPRG00000009404) #17	NOLC1 (ENSOPRG00000009381) ##18	PPRC1 (ENSOPRG00000009346) #19	LDB1 (ENSOPRG00000009325) #20	ARMH3 (ENSOPRG00000009274) #22	OGA (ENSOPRG00000009241) #24	NPM3 (ENSOPRG00000009229) #25
Rabbit	MODERN SPECIES	9	ARL3 (ENSOCUG00000005792)	TRIM8 (ENSOCUG00000005786)	SUFU (ENSOCUG00000005781)	ACTR1A (ENSOCUG00000005779) #7	MFSD13A (ENSOCUG00000005770) #8	FBXL15 (ENSOCUG00000005764) #10	CUEDC2 (ENSOCUG00000023995) #9	PSD (ENSOCUG00000005751) #12	NFKB2 (ENSOCUG00000005735) #14	GBF1 (ENSOCUG00000005714) #15	PITX3 (ENSOCUG00000016065) #16	ELOVL3 (ENSOCUG00000016071) #17	ENSOCUG00000000516 ##18	PPRC1 (ENSOCUG00000000510) #19	LDB1 (ENSOCUG00000025582) #20	ARMH3 (ENSOCUG00000002776) #22	KCNIP2 (ENSOCUG00000026348) #23	OGA (ENSOCUG00000002768) #24	NPM3 (ENSOCUG00000016819) #25	ENSOCUG00000027864 #26	FBXW4 (ENSOCUG00000015386) #27	DPCD (ENSOCUG00000015373) #28	POLL (ENSOCUG00000015364) #29	BTRC (ENSOCUG00000015353) #30	LBX1 (ENSOCUG00000013145) #31	TLX1 (ENSOCUG00000013136) #32	KAZALD1 (ENSOCUG00000002974) #33	SFXN3 (ENSOCUG00000002751) #34	ENSOCUG00000031924 #36	ENSOCUG00000006651 #36	LZTS2 (ENSOCUG00000021502)
Tree shrew	MODERN SPECIES	3389												NOLC1 (ENSTBEG00000008884) #18	PPRC1 (ENSTBEG00000008148) #19	LDB1 (ENSTBEG00000006924) #20	HPS6 (ENSTBEG00000006230) #21	ARMH3 (ENSTBEG00000004022) #22	OGA (ENSTBEG00000003188) #24	POLL (ENSTBEG00000002691) #29	BTRC (ENSTBEG00000001368) #30
Primates	ANCESTRAL SPECIES	16	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.a.b ##18	ENSGT00960000190004	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00990000203892 #35	ENSGT00940000154078.a.a
Strepsirrhini	ANCESTRAL SPECIES	11	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00990000203892 #35	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Lemuriformes	ANCESTRAL SPECIES	7	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00990000203892 #35	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Mouse lemur	MODERN SPECIES	6	ARL3 (ENSMICG00000012249)	TRIM8 (ENSMICG00000031109)	SUFU (ENSMICG00000012221)	ACTR1A (ENSMICG00000011929) #7	MFSD13A (ENSMICG00000011904) #8	CUEDC2 (ENSMICG00000043889) #9	FBXL15 (ENSMICG00000042452) #10	PSD (ENSMICG00000011877) #12	NFKB2 (ENSMICG00000011856) #14	GBF1 (ENSMICG00000011832) #15	PITX3 (ENSMICG00000045312) #16	ELOVL3 (ENSMICG00000048136) #17	NOLC1 (ENSMICG00000011811) #18	PPRC1 (ENSMICG00000011794) #19	LDB1 (ENSMICG00000011785) #20	ARMH3 (ENSMICG00000011767) #22	KCNIP2 (ENSMICG00000011754) #23	OGA (ENSMICG00000011745) #24	NPM3 (ENSMICG00000044119) #25	FGF8 (ENSMICG00000011733) #26	FBXW4 (ENSMICG00000030032) #27	DPCD (ENSMICG00000007381) #28	POLL (ENSMICG00000044578) #29	ENSMICG00000032738	BTRC (ENSMICG00000007365) #30	LBX1 (ENSMICG00000042752) #31	TLX1 (ENSMICG00000000020) #32	KAZALD1 (ENSMICG00000042680) #33	SFXN3 (ENSMICG00000000018) #34	PDZD7 (ENSMICG00000000017) #36	LZTS2 (ENSMICG00000000016)
Lemuriformes_a	ANCESTRAL SPECIES	21	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00940000166765	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00990000203892 #35	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Coquerels sifaka	MODERN SPECIES	870	ARL3 (ENSPCOG00000024271)	TRIM8 (ENSPCOG00000001337)	SUFU (ENSPCOG00000015700)	ACTR1A (ENSPCOG00000020914) #7	MFSD13A (ENSPCOG00000003583) #8	CUEDC2 (ENSPCOG00000028615) #9	FBXL15 (ENSPCOG00000025091) #10	PSD (ENSPCOG00000014657) #12	NFKB2 (ENSPCOG00000024535) #14	GBF1 (ENSPCOG00000027442) #15	PITX3 (ENSPCOG00000018343) #16	ELOVL3 (ENSPCOG00000022173) #17	ENSPCOG00000028588	PPRC1 (ENSPCOG00000025917) #19	LDB1 (ENSPCOG00000014358) #20	ARMH3 (ENSPCOG00000019882) #22	KCNIP2 (ENSPCOG00000024556) #23	OGA (ENSPCOG00000014940) #24	NPM3 (ENSPCOG00000014704) #25	FGF8 (ENSPCOG00000017981) #26	FBXW4 (ENSPCOG00000021206) #27	DPCD (ENSPCOG00000017781) #28	POLL (ENSPCOG00000019314) #29	ENSPCOG00000026908	ENSPCOG00000010924	BTRC (ENSPCOG00000020549) #30	LBX1 (ENSPCOG00000019643) #31	TLX1 (ENSPCOG00000000103) #32	KAZALD1 (ENSPCOG00000016724) #33	SFXN3 (ENSPCOG00000025511) #34	PDZD7 (ENSPCOG00000026114) #36
Greater bamboo lemur	MODERN SPECIES	1289												NOLC1 (ENSPSMG00000022996) #18	PPRC1 (ENSPSMG00000022903) #19	LDB1 (ENSPSMG00000022814) #20	HPS6 (ENSPSMG00000022801) #21	ARMH3 (ENSPSMG00000022788) #22	KCNIP2 (ENSPSMG00000022640) #23	OGA (ENSPSMG00000022436) #24	NPM3 (ENSPSMG00000022355) #25	FGF8 (ENSPSMG00000022347) #26
Bushbaby	MODERN SPECIES	136	SUFU (ENSOGAG00000004840)	ENSOGAG00000002647	ACTR1A (ENSOGAG00000004838) #7	MFSD13A (ENSOGAG00000000319) #8	CUEDC2 (ENSOGAG00000016405) #9	FBXL15 (ENSOGAG00000016397) #10	PSD (ENSOGAG00000016389) #12	NFKB2 (ENSOGAG00000016379) #14	GBF1 (ENSOGAG00000016366) #15	PITX3 (ENSOGAG00000029285) #16	ELOVL3 (ENSOGAG00000016363) #17	NOLC1 (ENSOGAG00000016359) #18	PPRC1 (ENSOGAG00000016354) #19	LDB1 (ENSOGAG00000016349) #20	HPS6 (ENSOGAG00000033543) #21	ARMH3 (ENSOGAG00000010009) #22	KCNIP2 (ENSOGAG00000010006) #23	ENSOGAG00000010002 #24	NPM3 (ENSOGAG00000010001) #25	FGF8 (ENSOGAG00000024920) #26	FBXW4 (ENSOGAG00000033125) #27	POLL (ENSOGAG00000012042) #29	BTRC (ENSOGAG00000014623) #30	LBX1 (ENSOGAG00000008679) #31	TLX1 (ENSOGAG00000013614) #32	KAZALD1 (ENSOGAG00000011722) #33	SFXN3 (ENSOGAG00000012881) #34	PDZD7 (ENSOGAG00000012875) #36	LZTS2 (ENSOGAG00000012873)	TWNK (ENSOGAG00000029204)	MRPL43 (ENSOGAG00000030715)
Haplorrhini	ANCESTRAL SPECIES	11	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.a.b ##18	ENSGT00960000190004	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00990000203892 #35	ENSGT00940000154078.a.a
Simiiformes	ANCESTRAL SPECIES	17	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00960000190004	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00990000203892 #35	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Catarrhini	ANCESTRAL SPECIES	18	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00960000190004	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00990000203892 #35	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Hominoidea	ANCESTRAL SPECIES	11	ENSGT00940000155782.s #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00960000190004	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00910000147806	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Hominidae	ANCESTRAL SPECIES	13	ENSGT00940000155782.s #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00960000190004	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00910000147806	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	17	ENSGT00940000155782.s #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00960000190004	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029.c #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00910000147806	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Homo/Pan group	ANCESTRAL SPECIES	18	ENSGT00940000155782.s #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00960000190004	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029.c #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Pan	ANCESTRAL SPECIES	16	ENSGT00940000155782.s #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00960000190004	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029.c #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Chimpanzee	MODERN SPECIES	1	SUFU (ENSPTRG00000002895)	ACTR1A (ENSPTRG00000002894) #7	MFSD13A (ENSPTRG00000002893) #8	C10H10orf95 (ENSPTRG00000045273)	CUEDC2 (ENSPTRG00000002891) #9	FBXL15 (ENSPTRG00000002890) #10	PSD (ENSPTRG00000002889) #12	NFKB2 (ENSPTRG00000002888) #14	GBF1 (ENSPTRG00000002887) #15	PITX3 (ENSPTRG00000002886) #16	ELOVL3 (ENSPTRG00000002885) #17	NOLC1 (ENSPTRG00000023882) #18	PPRC1 (ENSPTRG00000002883) #19	LDB1 (ENSPTRG00000023411) #20	HPS6 (ENSPTRG00000002881) #21	ARMH3 (ENSPTRG00000002879) #22	KCNIP2 (ENSPTRG00000002878) #23	OGA (ENSPTRG00000002876) #24	NPM3 (ENSPTRG00000002875) #25	FGF8 (ENSPTRG00000002874) #26	FBXW4 (ENSPTRG00000048959) #27	DPCD (ENSPTRG00000002871) #28	POLL (ENSPTRG00000002870) #29	BTRC (ENSPTRG00000002869) #30	LBX1 (ENSPTRG00000002868) #31	TLX1 (ENSPTRG00000002867) #32	KAZALD1 (ENSPTRG00000002865) #33	SFXN3 (ENSPTRG00000002864) #34	PDZD7 (ENSPTRG00000002862) #36	LZTS2 (ENSPTRG00000042870)	TWNK (ENSPTRG00000029751)
Bonobo	MODERN SPECIES	1	SUFU (ENSPPAG00000028891)	ACTR1A (ENSPPAG00000030539) #7	MFSD13A (ENSPPAG00000000308) #8	CUEDC2 (ENSPPAG00000013700) #9	FBXL15 (ENSPPAG00000041099) #10	PSD (ENSPPAG00000040288) #12	NFKB2 (ENSPPAG00000030613) #14	GBF1 (ENSPPAG00000042922) #15	ENSPPAG00000008353 #16	ELOVL3 (ENSPPAG00000040688) #17	ENSPPAG00000043390	NOLC1 (ENSPPAG00000038082) #18	PPRC1 (ENSPPAG00000032544) #19	LDB1 (ENSPPAG00000024094) #20	HPS6 (ENSPPAG00000011993) #21	ARMH3 (ENSPPAG00000040734) #22	KCNIP2 (ENSPPAG00000029455) #23	OGA (ENSPPAG00000030424) #24	NPM3 (ENSPPAG00000040517) #25	FGF8 (ENSPPAG00000039985) #26	ENSPPAG00000025691 #27	DPCD (ENSPPAG00000038194) #28	POLL (ENSPPAG00000036999) #29	BTRC (ENSPPAG00000034237) #30	TLX1 (ENSPPAG00000040366) #32	KAZALD1 (ENSPPAG00000029890) #33	SFXN3 (ENSPPAG00000029879) #34	PDZD7 (ENSPPAG00000036974) #36	LZTS2 (ENSPPAG00000003235)	TWNK (ENSPPAG00000035055)	ENSPPAG00000042828
Human	MODERN SPECIES	1	SUFU (ENSG00000107882)	ACTR1A (ENSG00000138107) #7	MFSD13A (ENSG00000138111) #8	C10orf95 (ENSG00000120055)	CUEDC2 (ENSG00000107874) #9	FBXL15 (ENSG00000107872) #10	PSD (ENSG00000059915) #12	NFKB2 (ENSG00000077150) #14	GBF1 (ENSG00000107862) #15	PITX3 (ENSG00000107859) #16	ELOVL3 (ENSG00000119915) #17	NOLC1 (ENSG00000166197) #18	PPRC1 (ENSG00000148840) #19	LDB1 (ENSG00000198728) #20	HPS6 (ENSG00000166189) #21	ARMH3 (ENSG00000120029) #22	KCNIP2 (ENSG00000120049) #23	OGA (ENSG00000198408) #24	NPM3 (ENSG00000107833) #25	FGF8 (ENSG00000107831) #26	FBXW4 (ENSG00000107829) #27	POLL (ENSG00000166169) #29	DPCD (ENSG00000166171) #28	BTRC (ENSG00000166167) #30	LBX1 (ENSG00000138136) #31	TLX1 (ENSG00000107807) #32	KAZALD1 (ENSG00000107821) #33	SFXN3 (ENSG00000107819) #34	PDZD7 (ENSG00000186862) #36	LZTS2 (ENSG00000107816)	TWNK (ENSG00000107815)
Gorilla	MODERN SPECIES	1	SUFU (ENSGGOG00000011242)	ACTR1A (ENSGGOG00000011237) #7	MFSD13A (ENSGGOG00000011231) #8	C10orf95 (ENSGGOG00000000806)	CUEDC2 (ENSGGOG00000006994) #9	FBXL15 (ENSGGOG00000006993) #10	PSD (ENSGGOG00000006985) #12	NFKB2 (ENSGGOG00000006971) #14	GBF1 (ENSGGOG00000006948) #15	PITX3 (ENSGGOG00000026128) #16	ELOVL3 (ENSGGOG00000024219) #17	NOLC1 (ENSGGOG00000002158) #18	PPRC1 (ENSGGOG00000002155) #19	LDB1 (ENSGGOG00000002151) #20	HPS6 (ENSGGOG00000008892) #21	ARMH3 (ENSGGOG00000006539) #22	KCNIP2 (ENSGGOG00000006534) #23	OGA (ENSGGOG00000002901) #24	NPM3 (ENSGGOG00000027500) #25	FGF8 (ENSGGOG00000015108) #26	ENSGGOG00000005039 #27	DPCD (ENSGGOG00000005035) #28	POLL (ENSGGOG00000005029) #29	ENSGGOG00000038754	BTRC (ENSGGOG00000005023) #30	LBX1 (ENSGGOG00000012521) #31	TLX1 (ENSGGOG00000005880) #32	KAZALD1 (ENSGGOG00000004516) #33	SFXN3 (ENSGGOG00000015442) #34	PDZD7 (ENSGGOG00000015436) #36	LZTS2 (ENSGGOG00000015430)
Orangutan	MODERN SPECIES	1	SUFU (ENSPPYG00000002606)	ACTR1A (ENSPPYG00000002605) #7	MFSD13A (ENSPPYG00000002604) #8	C10orf95 (ENSPPYG00000002603)	CUEDC2 (ENSPPYG00000002602) #9	ENSPPYG00000002601 #10	NFKB2 (ENSPPYG00000002599) #14	PSD (ENSPPYG00000002600) #12	GBF1 (ENSPPYG00000002598) #15	ENSPPYG00000002597 #16	ELOVL3 (ENSPPYG00000002596) #17	NOLC1 (ENSPPYG00000002595) #18	PPRC1 (ENSPPYG00000002594) #19	LDB1 (ENSPPYG00000002593) #20	HPS6 (ENSPPYG00000030981) #21	ARMH3 (ENSPPYG00000002592) #22	KCNIP2 (ENSPPYG00000002591) #23	OGA (ENSPPYG00000002590) #24	NPM3 (ENSPPYG00000002589) #25	FGF8 (ENSPPYG00000002588) #26	ENSPPYG00000002587	FBXW4 (ENSPPYG00000002586) #27	DPCD (ENSPPYG00000002585) #28	POLL (ENSPPYG00000002584) #29	BTRC (ENSPPYG00000002583) #30	LBX1 (ENSPPYG00000002582) #31	TLX1 (ENSPPYG00000002581) #32	KAZALD1 (ENSPPYG00000002580) #33	SFXN3 (ENSPPYG00000002579) #34	PDZD7 (ENSPPYG00000002578) #36	LZTS2 (ENSPPYG00000002577)
Gibbon	MODERN SPECIES	18	TRIM8 (ENSNLEG00000015181)	SUFU (ENSNLEG00000015166)	ACTR1A (ENSNLEG00000015157) #7	MFSD13A (ENSNLEG00000015151) #8	CUEDC2 (ENSNLEG00000027134) #9	FBXL15 (ENSNLEG00000015140) #10	ENSNLEG00000015114 #12	NFKB2 (ENSNLEG00000015079) #14	GBF1 (ENSNLEG00000015044) #15	PITX3 (ENSNLEG00000015040) #16	ELOVL3 (ENSNLEG00000015039) #17	NOLC1 (ENSNLEG00000015012) #18	PPRC1 (ENSNLEG00000014996) #19	LDB1 (ENSNLEG00000014982) #20	HPS6 (ENSNLEG00000019112) #21	ARMH3 (ENSNLEG00000014964) #22	ENSNLEG00000030076	ENSNLEG00000014924 #23	OGA (ENSNLEG00000014902) #24	ENSNLEG00000029281 #25	FGF8 (ENSNLEG00000014890) #26	ENSNLEG00000014885 #27	DPCD (ENSNLEG00000014878) #28	POLL (ENSNLEG00000014861) #29	BTRC (ENSNLEG00000014843) #30	ENSNLEG00000028284	LBX1 (ENSNLEG00000014840) #31	TLX1 (ENSNLEG00000029481) #32	KAZALD1 (ENSNLEG00000035599) #33	SFXN3 (ENSNLEG00000014831) #34	PDZD7 (ENSNLEG00000014823) #36
Cercopithecidae	ANCESTRAL SPECIES	15	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00990000203892 #35	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Rhinopithecus	ANCESTRAL SPECIES	11	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00990000203892 #35	ENSGT00940000154078.a.a
Golden snub-nosed monkey	MODERN SPECIES	3053	TRIM8 (ENSRROG00000030582)	SUFU (ENSRROG00000008851)	ACTR1A (ENSRROG00000039390) #7	MFSD13A (ENSRROG00000031926) #8	CUEDC2 (ENSRROG00000044234) #9	FBXL15 (ENSRROG00000033504) #10	PSD (ENSRROG00000041323) #12	NFKB2 (ENSRROG00000034177) #14	GBF1 (ENSRROG00000033162) #15	PITX3 (ENSRROG00000020365) #16	ELOVL3 (ENSRROG00000040217) #17	NOLC1 (ENSRROG00000038056) #18	PPRC1 (ENSRROG00000044599) #19	LDB1 (ENSRROG00000033778) #20	HPS6 (ENSRROG00000015252) #21	ARMH3 (ENSRROG00000032495) #22	KCNIP2 (ENSRROG00000029744) #23	OGA (ENSRROG00000045455) #24	NPM3 (ENSRROG00000029912) #25	FGF8 (ENSRROG00000038994) #26	FBXW4 (ENSRROG00000038393) #27	ENSRROG00000023920	DPCD (ENSRROG00000044275) #28	POLL (ENSRROG00000032669) #29	BTRC (ENSRROG00000030265) #30	LBX1 (ENSRROG00000044455) #31	TLX1 (ENSRROG00000044869) #32	KAZALD1 (ENSRROG00000028521) #33	SFXN3 (ENSRROG00000042473) #34	PDZD7 (ENSRROG00000042033) #36	LZTS2 (ENSRROG00000044508)
Black snub-nosed monkey	MODERN SPECIES	1538	TRIM8 (ENSRBIG00000032947)	SUFU (ENSRBIG00000041782)	ACTR1A (ENSRBIG00000035561) #7	ENSRBIG00000044237	CUEDC2 (ENSRBIG00000043930) #9	FBXL15 (ENSRBIG00000042023) #10	PSD (ENSRBIG00000042590) #12	NFKB2 (ENSRBIG00000028068) #14	GBF1 (ENSRBIG00000005903) #15	PITX3 (ENSRBIG00000035684) #16	ELOVL3 (ENSRBIG00000025844) #17	NOLC1 (ENSRBIG00000032216) #18	PPRC1 (ENSRBIG00000027711) #19	LDB1 (ENSRBIG00000023954) #20	HPS6 (ENSRBIG00000021408) #21	ARMH3 (ENSRBIG00000030224) #22	KCNIP2 (ENSRBIG00000036933) #23	OGA (ENSRBIG00000042557) #24	NPM3 (ENSRBIG00000039086) #25	FGF8 (ENSRBIG00000038141) #26	FBXW4 (ENSRBIG00000029703) #27	DPCD (ENSRBIG00000029630) #28	ENSRBIG00000025168	POLL (ENSRBIG00000034819) #29	BTRC (ENSRBIG00000000373) #30	LBX1 (ENSRBIG00000043576) #31	TLX1 (ENSRBIG00000028309) #32	KAZALD1 (ENSRBIG00000029657) #33	SFXN3 (ENSRBIG00000033345) #34	PDZD7 (ENSRBIG00000030466) #36	ENSRBIG00000006061 #35
Cercopithecinae	ANCESTRAL SPECIES	15	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00990000203892 #35	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Vervet Monkey	MODERN SPECIES	28	TRIM8 (ENSCSAG00000005411)	SUFU (ENSCSAG00000005416)	ACTR1A (ENSCSAG00000005419) #7	MFSD13A (ENSCSAG00000005428) #8	FBXL15 (ENSCSAG00000005432) #10	CUEDC2 (ENSCSAG00000005434) #9	PSD (ENSCSAG00000005438) #12	NFKB2 (ENSCSAG00000005442) #14	GBF1 (ENSCSAG00000005450) #15	PITX3 (ENSCSAG00000005456) #16	ELOVL3 (ENSCSAG00000005460) #17	NOLC1 (ENSCSAG00000005465) #18	PPRC1 (ENSCSAG00000005471) #19	LDB1 (ENSCSAG00000005474) #20	HPS6 (ENSCSAG00000018450) #21	ARMH3 (ENSCSAG00000005491) #22	KCNIP2 (ENSCSAG00000005501) #23	OGA (ENSCSAG00000005507) #24	NPM3 (ENSCSAG00000005509) #25	FGF8 (ENSCSAG00000005512) #26	FBXW4 (ENSCSAG00000005515) #27	DPCD (ENSCSAG00000005519) #28	POLL (ENSCSAG00000005523) #29	BTRC (ENSCSAG00000005528) #30	LBX1 (ENSCSAG00000005532) #31	TLX1 (ENSCSAG00000005535) #32	KAZALD1 (ENSCSAG00000005540) #33	SFXN3 (ENSCSAG00000005542) #34	ENSCSAG00000005544 #36	LZTS2 (ENSCSAG00000005545)	TWNK (ENSCSAG00000005548)
Cercopithecinae_a	ANCESTRAL SPECIES	14	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00990000203892 #35	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Macaca	ANCESTRAL SPECIES	11	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a.m #34	ENSGT00950000183002.C #36	ENSGT00990000203892 #35	ENSGT00940000154078.a.a
Macaca_a	ANCESTRAL SPECIES	13	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT01100000263577.a.a.b.b.a.a.b.a.a.a.a	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a.m #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Crab-eating macaque	MODERN SPECIES	19	ACTR1A (ENSMFAG00000041926) #7	MFSD13A (ENSMFAG00000041523) #8	CUEDC2 (ENSMFAG00000035328) #9	FBXL15 (ENSMFAG00000033584) #10	PSD (ENSMFAG00000000282) #12	NFKB2 (ENSMFAG00000031139) #14	ENSMFAG00000047401	GBF1 (ENSMFAG00000002812) #15	PITX3 (ENSMFAG00000045143) #16	ELOVL3 (ENSMFAG00000036362) #17	NOLC1 (ENSMFAG00000044654) #18	ENSMFAG00000038589 #19	LDB1 (ENSMFAG00000041257) #20	ENSMFAG00000061163	ENSMFAG00000051632	ARMH3 (ENSMFAG00000044833) #22	KCNIP2 (ENSMFAG00000046056) #23	OGA (ENSMFAG00000032188) #24	NPM3 (ENSMFAG00000041878) #25	FGF8 (ENSMFAG00000003751) #26	FBXW4 (ENSMFAG00000044810) #27	DPCD (ENSMFAG00000036058) #28	POLL (ENSMFAG00000043080) #29	BTRC (ENSMFAG00000005295) #30	TLX1 (ENSMFAG00000045878) #32	KAZALD1 (ENSMFAG00000063924) #33	SFXN3 (ENSMFAG00000035501) #34	PDZD7 (ENSMFAG00000037794) #36	LZTS2 (ENSMFAG00000048904)	TWNK (ENSMFAG00000032824)	MRPL43 (ENSMFAG00000036954)
Rhesus	MODERN SPECIES	19	ARL3 (ENSMMUG00000060039)	ENSMMUG00000047000	TRIM8 (ENSMMUG00000004394)	SUFU (ENSMMUG00000004396)	ACTR1A (ENSMMUG00000011949) #7	MFSD13A (ENSMMUG00000011948) #8	ENSMMUG00000003000 #9	GBF1 (ENSMMUG00000002985) #15	PITX3 (ENSMMUG00000056167) #16	ELOVL3 (ENSMMUG00000022752) #17	NOLC1 (ENSMMUG00000001183) #18	PPRC1 (ENSMMUG00000001186) #19	LDB1 (ENSMMUG00000009375) #20	ENSMMUG00000056725	HPS6 (ENSMMUG00000009374) #21	ARMH3 (ENSMMUG00000001539) #22	KCNIP2 (ENSMMUG00000015776) #23	OGA (ENSMMUG00000015775) #24	NPM3 (ENSMMUG00000015774) #25	FGF8 (ENSMMUG00000015771) #26	FBXW4 (ENSMMUG00000052198) #27	DPCD (ENSMMUG00000006751) #28	POLL (ENSMMUG00000006747) #29	BTRC (ENSMMUG00000006741) #30	LBX1 (ENSMMUG00000060144) #31	TLX1 (ENSMMUG00000017667) #32	KAZALD1 (ENSMMUG00000017668) #33	SFXN3 (ENSMMUG00000022620) #34	LZTS2 (ENSMMUG00000010674)	TWNK (ENSMMUG00000064033)	MRPL43 (ENSMMUG00000010679)
Pig-tailed macaque	MODERN SPECIES	550	TRIM8 (ENSMNEG00000038779)	SUFU (ENSMNEG00000034125)	ACTR1A (ENSMNEG00000028948) #7	MFSD13A (ENSMNEG00000029124) #8	CUEDC2 (ENSMNEG00000041547) #9	FBXL15 (ENSMNEG00000037370) #10	PSD (ENSMNEG00000037103) #12	NFKB2 (ENSMNEG00000030201) #14	GBF1 (ENSMNEG00000030880) #15	PITX3 (ENSMNEG00000027087) #16	ELOVL3 (ENSMNEG00000026432) #17	NOLC1 (ENSMNEG00000033199) #18	PPRC1 (ENSMNEG00000031603) #19	LDB1 (ENSMNEG00000039832) #20	HPS6 (ENSMNEG00000003739) #21	ARMH3 (ENSMNEG00000027491) #22	KCNIP2 (ENSMNEG00000033420) #23	OGA (ENSMNEG00000042719) #24	NPM3 (ENSMNEG00000039999) #25	FGF8 (ENSMNEG00000044546) #26	FBXW4 (ENSMNEG00000007347) #27	DPCD (ENSMNEG00000039583) #28	ENSMNEG00000041174	POLL (ENSMNEG00000032214) #29	BTRC (ENSMNEG00000043926) #30	LBX1 (ENSMNEG00000003768) #31	TLX1 (ENSMNEG00000039702) #32	KAZALD1 (ENSMNEG00000041154) #33	SFXN3 (ENSMNEG00000041774) #34	PDZD7 (ENSMNEG00000036573) #36	ENSMNEG00000000753 #35
Cercopithecinae_b	ANCESTRAL SPECIES	14	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00990000203892 #35	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Olive baboon	MODERN SPECIES	2	TRIM8 (ENSPANG00000020989)	SUFU (ENSPANG00000020987)	ACTR1A (ENSPANG00000020986) #7	MFSD13A (ENSPANG00000020985) #8	CUEDC2 (ENSPANG00000020984) #9	FBXL15 (ENSPANG00000021009) #10	PSD (ENSPANG00000021011) #12	NFKB2 (ENSPANG00000021013) #14	GBF1 (ENSPANG00000021018) #15	PITX3 (ENSPANG00000021020) #16	ELOVL3 (ENSPANG00000021015) #17	NOLC1 (ENSPANG00000021014) #18	PPRC1 (ENSPANG00000021042) #19	LDB1 (ENSPANG00000021043) #20	HPS6 (ENSPANG00000004207) #21	ARMH3 (ENSPANG00000021051) #22	KCNIP2 (ENSPANG00000021049) #23	OGA (ENSPANG00000021048) #24	NPM3 (ENSPANG00000021046) #25	FGF8 (ENSPANG00000021045) #26	FBXW4 (ENSPANG00000021059) #27	DPCD (ENSPANG00000021068) #28	POLL (ENSPANG00000021067) #29	BTRC (ENSPANG00000021065) #30	ENSPANG00000045293	LBX1 (ENSPANG00000021064) #31	ENSPANG00000040129	TLX1 (ENSPANG00000021063) #32	KAZALD1 (ENSPANG00000021061) #33	SFXN3 (ENSPANG00000021121) #34	PDZD7 (ENSPANG00000021127) #36
Cercopithecinae_d	ANCESTRAL SPECIES	57	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00990000203892 #35	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Sooty mangabey	MODERN SPECIES	598	TRIM8 (ENSCATG00000033750)	SUFU (ENSCATG00000039824)	ACTR1A (ENSCATG00000036491) #7	MFSD13A (ENSCATG00000032986) #8	CUEDC2 (ENSCATG00000043008) #9	FBXL15 (ENSCATG00000038266) #10	PSD (ENSCATG00000029120) #12	NFKB2 (ENSCATG00000033674) #14	GBF1 (ENSCATG00000041222) #15	PITX3 (ENSCATG00000035980) #16	ELOVL3 (ENSCATG00000029918) #17	NOLC1 (ENSCATG00000020949) #18	PPRC1 (ENSCATG00000029634) #19	LDB1 (ENSCATG00000041139) #20	HPS6 (ENSCATG00000007175) #21	ARMH3 (ENSCATG00000044859) #22	KCNIP2 (ENSCATG00000037631) #23	OGA (ENSCATG00000032677) #24	NPM3 (ENSCATG00000013755) #25	FGF8 (ENSCATG00000032104) #26	FBXW4 (ENSCATG00000042023) #27	DPCD (ENSCATG00000015600) #28	POLL (ENSCATG00000030579) #29	BTRC (ENSCATG00000041687) #30	LBX1 (ENSCATG00000015241) #31	TLX1 (ENSCATG00000027146) #32	KAZALD1 (ENSCATG00000012292) #33	SFXN3 (ENSCATG00000031461) #34	ENSCATG00000013628 #35	PDZD7 (ENSCATG00000041708) #36	LZTS2 (ENSCATG00000035009)
Drill	MODERN SPECIES	660	ENSMLEG00000021573	TRIM8 (ENSMLEG00000039981)	SUFU (ENSMLEG00000030702)	ACTR1A (ENSMLEG00000040789) #7	MFSD13A (ENSMLEG00000014638) #8	CUEDC2 (ENSMLEG00000033705) #9	FBXL15 (ENSMLEG00000031428) #10	PSD (ENSMLEG00000007902) #12	NFKB2 (ENSMLEG00000025549) #14	GBF1 (ENSMLEG00000030526) #15	ENSMLEG00000041298 #16	ELOVL3 (ENSMLEG00000042786) #17	NOLC1 (ENSMLEG00000040773) #18	PPRC1 (ENSMLEG00000035092) #19	LDB1 (ENSMLEG00000029239) #20	ARMH3 (ENSMLEG00000040244) #22	KCNIP2 (ENSMLEG00000040604) #23	OGA (ENSMLEG00000034257) #24	NPM3 (ENSMLEG00000038129) #25	FGF8 (ENSMLEG00000038840) #26	FBXW4 (ENSMLEG00000039840) #27	DPCD (ENSMLEG00000036892) #28	POLL (ENSMLEG00000044464) #29	BTRC (ENSMLEG00000037020) #30	LBX1 (ENSMLEG00000038173) #31	TLX1 (ENSMLEG00000036491) #32	KAZALD1 (ENSMLEG00000041241) #33	SFXN3 (ENSMLEG00000041643) #34	ENSMLEG00000018361 #35	PDZD7 (ENSMLEG00000044282) #36	LZTS2 (ENSMLEG00000043006)
Platyrrhini	ANCESTRAL SPECIES	14	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796.g.b #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00990000203892 #35	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Cebidae	ANCESTRAL SPECIES	17	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796.g.b #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00990000203892 #35	ENSGT00940000154078.a.a
Cebidae_a	ANCESTRAL SPECIES	13	ENSGT00940000155737.b	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092.b #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000002554 #22	ENSGT00390000005532.e.b.e	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796.g.b #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00990000203892 #35
Capuchin	MODERN SPECIES	71	SUFU (ENSCCAG00000024592)	ENSCCAG00000035649	ACTR1A (ENSCCAG00000022008) #7	ENSCCAG00000030377	CUEDC2 (ENSCCAG00000031794) #9	FBXL15 (ENSCCAG00000035564) #10	PSD (ENSCCAG00000018781) #12	NFKB2 (ENSCCAG00000036762) #14	GBF1 (ENSCCAG00000035570) #15	PITX3 (ENSCCAG00000024206) #16	ELOVL3 (ENSCCAG00000030858) #17	NOLC1 (ENSCCAG00000031293) #18	PPRC1 (ENSCCAG00000014910) #19	LDB1 (ENSCCAG00000032351) #20	ENSCCAG00000019492	ARMH3 (ENSCCAG00000030229) #22	ENSCCAG00000021166	KCNIP2 (ENSCCAG00000020733) #23	OGA (ENSCCAG00000035955) #24	ENSCCAG00000031043 #25	FGF8 (ENSCCAG00000028398) #26	FBXW4 (ENSCCAG00000015377) #27	DPCD (ENSCCAG00000031078) #28	POLL (ENSCCAG00000021549) #29	BTRC (ENSCCAG00000028586) #30	TYROBP (ENSCCAG00000030200)	LBX1 (ENSCCAG00000027225) #31	ENSCCAG00000018927	TLX1 (ENSCCAG00000022529) #32	KAZALD1 (ENSCCAG00000025698) #33	SFXN3 (ENSCCAG00000027543) #34
Bolivian squirrel monkey	MODERN SPECIES	47	ARL3 (ENSSBOG00000030806)	TRIM8 (ENSSBOG00000024105)	SUFU (ENSSBOG00000027977)	ACTR1A (ENSSBOG00000019736) #7	MFSD13A (ENSSBOG00000022135) #8	CUEDC2 (ENSSBOG00000033427) #9	FBXL15 (ENSSBOG00000024265) #10	PSD (ENSSBOG00000025518) #12	NFKB2 (ENSSBOG00000027266) #14	GBF1 (ENSSBOG00000021062) #15	ENSSBOG00000016252 #16	ELOVL3 (ENSSBOG00000028586) #17	NOLC1 (ENSSBOG00000031205) #18	PPRC1 (ENSSBOG00000021902) #19	LDB1 (ENSSBOG00000029453) #20	ARMH3 (ENSSBOG00000027965) #22	ENSSBOG00000028614	KCNIP2 (ENSSBOG00000029268) #23	OGA (ENSSBOG00000024431) #24	NPM3 (ENSSBOG00000027661) #25	FGF8 (ENSSBOG00000026891) #26	ENSSBOG00000026520	FBXW4 (ENSSBOG00000036214) #27	DPCD (ENSSBOG00000024659) #28	POLL (ENSSBOG00000035823) #29	BTRC (ENSSBOG00000034480) #30	LBX1 (ENSSBOG00000026504) #31	ENSSBOG00000030742 #32	KAZALD1 (ENSSBOG00000032715) #33	SFXN3 (ENSSBOG00000032559) #34	PDZD7 (ENSSBOG00000035647) #36
Marmoset	MODERN SPECIES	3	C10orf95 (ENSCJAG00000048294)	MFSD13A (ENSCJAG00000018006) #8	CUEDC2 (ENSCJAG00000065966) #9	FBXL15 (ENSCJAG00000017990) #10	PSD (ENSCJAG00000017941) #12	NFKB2 (ENSCJAG00000017928) #14	GBF1 (ENSCJAG00000017861) #15	PITX3 (ENSCJAG00000017858) #16	ELOVL3 (ENSCJAG00000079228) #17	ENSCJAG00000082055	NOLC1 (ENSCJAG00000017832) #18	PPRC1 (ENSCJAG00000017812) #19	LDB1 (ENSCJAG00000017777) #20	HPS6 (ENSCJAG00000022973) #21	ENSCJAG00000056816	ARMH3 (ENSCJAG00000017743) #22	KCNIP2 (ENSCJAG00000017676) #23	OGA (ENSCJAG00000017657) #24	NPM3 (ENSCJAG00000017650) #25	FGF8 (ENSCJAG00000084172) #26	FBXW4 (ENSCJAG00000017627) #27	DPCD (ENSCJAG00000017614) #28	POLL (ENSCJAG00000017600) #29	BTRC (ENSCJAG00000017573) #30	LBX1 (ENSCJAG00000017569) #31	ENSCJAG00000087194	TLX1 (ENSCJAG00000017563) #32	KAZALD1 (ENSCJAG00000017554) #33	SFXN3 (ENSCJAG00000017527) #34	PDZD7 (ENSCJAG00000017518) #36	LZTS2 (ENSCJAG00000041968)
Mas night monkey	MODERN SPECIES	658	TRIM8 (ENSANAG00000021560)	SUFU (ENSANAG00000036277)	ACTR1A (ENSANAG00000033970) #7	MFSD13A (ENSANAG00000032765) #8	C10orf95 (ENSANAG00000032530)	CUEDC2 (ENSANAG00000038457) #9	FBXL15 (ENSANAG00000005171) #10	PSD (ENSANAG00000020954) #12	NFKB2 (ENSANAG00000038091) #14	GBF1 (ENSANAG00000028077) #15	PITX3 (ENSANAG00000023017) #16	ELOVL3 (ENSANAG00000037453) #17	PPRC1 (ENSANAG00000029448) #19	LDB1 (ENSANAG00000034893) #20	ENSANAG00000019621	ARMH3 (ENSANAG00000029091) #22	KCNIP2 (ENSANAG00000020362) #23	OGA (ENSANAG00000034639) #24	ENSANAG00000027082 #25	FGF8 (ENSANAG00000031951) #26	FBXW4 (ENSANAG00000034872) #27	DPCD (ENSANAG00000036663) #28	POLL (ENSANAG00000021199) #29	BTRC (ENSANAG00000035347) #30	LBX1 (ENSANAG00000036814) #31	TLX1 (ENSANAG00000027104) #32	KAZALD1 (ENSANAG00000020414) #33	SFXN3 (ENSANAG00000035635) #34	ENSANAG00000021408 #35	PDZD7 (ENSANAG00000023929) #36	LZTS2 (ENSANAG00000012310)
Tarsier	MODERN SPECIES	6337																CUNH10orf76 (ENSTSYG00000012661) #22
Laurasiatheria	ANCESTRAL SPECIES	14	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT01100000267139 #11	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00960000190004	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00990000203892 #35	ENSGT00940000154078.a.a
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000002554 #22
Common shrew	MODERN SPECIES	6920																ARMH3 (ENSSARG00000006004) #22
Hedgehog	MODERN SPECIES	2087																ARMH3 (ENSEEUG00000003185) #22
Laurasiatheria_a	ANCESTRAL SPECIES	15	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT01100000267139 #11	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00960000190004	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00990000203892 #35	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Artiodactyla	ANCESTRAL SPECIES	14	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00960000190004	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00990000203892 #35	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Suina	ANCESTRAL SPECIES	6	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00990000203892 #35	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Pig	MODERN SPECIES	5	ENSSSCG00000037500	SUFU (ENSSSCG00000010586)	ACTR1A (ENSSSCG00000010585) #7	MFSD13A (ENSSSCG00000010584) #8	CUEDC2 (ENSSSCG00000033359) #9	FBXL15 (ENSSSCG00000038504) #10	PSD (ENSSSCG00000010581) #12	NFKB2 (ENSSSCG00000010580) #14	ENSSSCG00000054273	GBF1 (ENSSSCG00000010579) #15	PITX3 (ENSSSCG00000010578) #16	ELOVL3 (ENSSSCG00000010577) #17	NOLC1 (ENSSSCG00000010576) #18	PPRC1 (ENSSSCG00000010575) #19	LDB1 (ENSSSCG00000010574) #20	ARMH3 (ENSSSCG00000010571) #22	KCNIP2 (ENSSSCG00000010570) #23	OGA (ENSSSCG00000010569) #24	NPM3 (ENSSSCG00000010568) #25	FGF8 (ENSSSCG00000036146) #26	FBXW4 (ENSSSCG00000010566) #27	DPCD (ENSSSCG00000010565) #28	POLL (ENSSSCG00000010564) #29	ENSSSCG00000044625	BTRC (ENSSSCG00000010563) #30	LBX1 (ENSSSCG00000022693) #31	TLX1 (ENSSSCG00000010561) #32	KAZALD1 (ENSSSCG00000022429) #33	SFXN3 (ENSSSCG00000022005) #34	ENSSSCG00000053081 #35	ENSSSCG00000010559 #36
Chacoan peccary	MODERN SPECIES	955	TRIM8 (ENSCWAG00000013236)	SUFU (ENSCWAG00000013266)	ACTR1A (ENSCWAG00000013459) #7	MFSD13A (ENSCWAG00000013539) #8	C10orf95 (ENSCWAG00000013611)	CUEDC2 (ENSCWAG00000013653) #9	FBXL15 (ENSCWAG00000013741) #10	PSD (ENSCWAG00000013816) #12	NFKB2 (ENSCWAG00000014044) #14	GBF1 (ENSCWAG00000014118) #15	PITX3 (ENSCWAG00000014269) #16	ELOVL3 (ENSCWAG00000014311) #17	PPRC1 (ENSCWAG00000014410) #19	LDB1 (ENSCWAG00000015033) #20	HPS6 (ENSCWAG00000015092) #21	ARMH3 (ENSCWAG00000015108) #22	KCNIP2 (ENSCWAG00000015234) #23	OGA (ENSCWAG00000016757) #24	NPM3 (ENSCWAG00000016863) #25	FGF8 (ENSCWAG00000016899) #26	FBXW4 (ENSCWAG00000017072) #27	DPCD (ENSCWAG00000017144) #28	POLL (ENSCWAG00000017186) #29	BTRC (ENSCWAG00000017438) #30	LBX1 (ENSCWAG00000017504) #31	TLX1 (ENSCWAG00000017532) #32	KAZALD1 (ENSCWAG00000017546) #33	SFXN3 (ENSCWAG00000017574) #34	PDZD7 (ENSCWAG00000017620) #36	ENSCWAG00000017773 #35	LZTS2 (ENSCWAG00000017792)
Artiodactyla_a	ANCESTRAL SPECIES	14	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00960000190004	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Artiodactyla_b	ANCESTRAL SPECIES	13	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00960000190004	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Cetacea	ANCESTRAL SPECIES	15	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00960000190004	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Odontoceti	ANCESTRAL SPECIES	14	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00960000190004	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00950000183143.c.a.p.a.a	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Odontoceti_a	ANCESTRAL SPECIES	11	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00960000190004	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00950000183143.c.a.p.a.a	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Odontoceti_b	ANCESTRAL SPECIES	14	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00960000190004	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00950000183143.c.a.p.a.a	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Monodontidae	ANCESTRAL SPECIES	14	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00960000190004	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00950000183143.c.a.p.a.a	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Narwhal	MODERN SPECIES	311	MFSD13A (ENSMMNG00015013161) #8	C10orf95 (ENSMMNG00015013148)	CUEDC2 (ENSMMNG00015013134) #9	FBXL15 (ENSMMNG00015013118) #10	PSD (ENSMMNG00015013097) #12	NFKB2 (ENSMMNG00015013070) #14	GBF1 (ENSMMNG00015013050) #15	PITX3 (ENSMMNG00015013029) #16	ELOVL3 (ENSMMNG00015013018) #17	ENSMMNG00015013008	ENSMMNG00015013002	NOLC1 (ENSMMNG00015012973) #18	PPRC1 (ENSMMNG00015012955) #19	LDB1 (ENSMMNG00015012934) #20	HPS6 (ENSMMNG00015012924) #21	ARMH3 (ENSMMNG00015012888) #22	KCNIP2 (ENSMMNG00015012789) #23	OGA (ENSMMNG00015012693) #24	NPM3 (ENSMMNG00015012666) #25	FGF8 (ENSMMNG00015012625) #26	FBXW4 (ENSMMNG00015012596) #27	DPCD (ENSMMNG00015012580) #28	POLL (ENSMMNG00015012562) #29	ENSMMNG00015012545	BTRC (ENSMMNG00015012491) #30	LBX1 (ENSMMNG00015012454) #31	ENSMMNG00015012448	TLX1 (ENSMMNG00015012435) #32	KAZALD1 (ENSMMNG00015012419) #33	SFXN3 (ENSMMNG00015012374) #34	PDZD7 (ENSMMNG00015012332) #36
Beluga whale	MODERN SPECIES	65	ACTR1A (ENSDLEG00000009891) #7	MFSD13A (ENSDLEG00000009947) #8	CUEDC2 (ENSDLEG00000010002) #9	FBXL15 (ENSDLEG00000010029) #10	PSD (ENSDLEG00000010100) #12	NFKB2 (ENSDLEG00000010672) #14	GBF1 (ENSDLEG00000010758) #15	PITX3 (ENSDLEG00000011013) #16	ELOVL3 (ENSDLEG00000011030) #17	ENSDLEG00000011076	NOLC1 (ENSDLEG00000011092) #18	ENSDLEG00000011138	PPRC1 (ENSDLEG00000011163) #19	LDB1 (ENSDLEG00000011231) #20	HPS6 (ENSDLEG00000011254) #21	ARMH3 (ENSDLEG00000011308) #22	KCNIP2 (ENSDLEG00000011996) #23	MGEA5 (ENSDLEG00000012761) #24	NPM3 (ENSDLEG00000014430) #25	FGF8 (ENSDLEG00000014445) #26	FBXW4 (ENSDLEG00000014542) #27	DPCD (ENSDLEG00000014637) #28	POLL (ENSDLEG00000014662) #29	BTRC (ENSDLEG00000014853) #30	ENSDLEG00000016243	LBX1 (ENSDLEG00000016256) #31	ENSDLEG00000016263	TLX1 (ENSDLEG00000016266) #32	KAZALD1 (ENSDLEG00000016276) #33	SFXN3 (ENSDLEG00000016287) #34	ENSDLEG00000016313 #36
Vaquita	MODERN SPECIES	7	TRIM8 (ENSPSNG00000017907)	SUFU (ENSPSNG00000017847)	ACTR1A (ENSPSNG00000017727) #7	MFSD13A (ENSPSNG00000017652) #8	CUEDC2 (ENSPSNG00000017566) #9	FBXL15 (ENSPSNG00000017495) #10	PSD (ENSPSNG00000017329) #12	NFKB2 (ENSPSNG00000017232) #14	GBF1 (ENSPSNG00000017028) #15	PITX3 (ENSPSNG00000016915) #16	ELOVL3 (ENSPSNG00000016876) #17	NOLC1 (ENSPSNG00000016800) #18	PPRC1 (ENSPSNG00000016660) #19	LDB1 (ENSPSNG00000016526) #20	HPS6 (ENSPSNG00000016490) #21	ARMH3 (ENSPSNG00000016447) #22	KCNIP2 (ENSPSNG00000015521) #23	OGA (ENSPSNG00000015199) #24	NPM3 (ENSPSNG00000015111) #25	FGF8 (ENSPSNG00000014763) #26	FBXW4 (ENSPSNG00000014655) #27	DPCD (ENSPSNG00000014573) #28	POLL (ENSPSNG00000014325) #29	ENSPSNG00000014239	BTRC (ENSPSNG00000013992) #30	LBX1 (ENSPSNG00000013867) #31	ENSPSNG00000013837	TLX1 (ENSPSNG00000013783) #32	KAZALD1 (ENSPSNG00000013727) #33	SFXN3 (ENSPSNG00000013687) #34	ENSPSNG00000013625 #36
Dolphin	MODERN SPECIES	582													NOLC1 (ENSTTRG00000014974) #18	PPRC1 (ENSTTRG00000014966) #19	ENSTTRG00000014960 #20	ARMH3 (ENSTTRG00000014955) #22	KCNIP2 (ENSTTRG00000014952) #23	OGA (ENSTTRG00000014946) #24	ENSTTRG00000014942	FGF8 (ENSTTRG00000014939) #26	FBXW4 (ENSTTRG00000014933) #27	DPCD (ENSTTRG00000014929) #28	POLL (ENSTTRG00000014923) #29	BTRC (ENSTTRG00000014908) #30	LBX1 (ENSTTRG00000014899) #31
Sperm whale	MODERN SPECIES	12	CYP17A1 (ENSPCTG00005020262)	WBP1L (ENSPCTG00005020108)	ARL3 (ENSPCTG00005020073)	GBF1 (ENSPCTG00005019758) #15	NFKB2 (ENSPCTG00005019685) #14	PSD (ENSPCTG00005019477) #12	FBXL15 (ENSPCTG00005019435) #10	CUEDC2 (ENSPCTG00005019392) #9	MFSD13A (ENSPCTG00005019320) #8	ACTR1A (ENSPCTG00005019239) #7	ENSPCTG00005019221	NOLC1 (ENSPCTG00005019168) #18	OGA (ENSPCTG00005019093) #24	LDB1 (ENSPCTG00005019052) #20	HPS6 (ENSPCTG00005019039) #21	ARMH3 (ENSPCTG00005018935) #22	FBXW4 (ENSPCTG00005018820) #27	DPCD (ENSPCTG00005018790) #28	POLL (ENSPCTG00005018631) #29	ENSPCTG00005018571	BTRC (ENSPCTG00005018325) #30	KAZALD1 (ENSPCTG00005018258) #33	SLF2 (ENSPCTG00005018174)	PAX2 (ENSPCTG00005017976)	HIF1AN (ENSPCTG00005017931)	NDUFB8 (ENSPCTG00005017856)	SEC31B (ENSPCTG00005017805)	WNT8B (ENSPCTG00005017722)	SCD (ENSPCTG00005017655)	BLOC1S2 (ENSPCTG00005017426)	CWF19L1 (ENSPCTG00005017347)
Blue whale	MODERN SPECIES	7	SUFU (ENSBMSG00010015610)	ACTR1A (ENSBMSG00010015668) #7	MFSD13A (ENSBMSG00010015734) #8	CUEDC2 (ENSBMSG00010015781) #9	FBXL15 (ENSBMSG00010015838) #10	PSD (ENSBMSG00010015899) #12	ENSBMSG00010016052 #14	GBF1 (ENSBMSG00010016085) #15	PITX3 (ENSBMSG00010016125) #16	ELOVL3 (ENSBMSG00010016149) #17	NOLC1 (ENSBMSG00010016181) #18	ENSBMSG00010016224	PPRC1 (ENSBMSG00010016252) #19	LDB1 (ENSBMSG00010016310) #20	HPS6 (ENSBMSG00010016356) #21	ARMH3 (ENSBMSG00010016376) #22	KCNIP2 (ENSBMSG00010016543) #23	OGA (ENSBMSG00010018215) #24	NPM3 (ENSBMSG00010018271) #25	FGF8 (ENSBMSG00010018314) #26	FBXW4 (ENSBMSG00010018485) #27	DPCD (ENSBMSG00010018596) #28	POLL (ENSBMSG00010018641) #29	BTRC (ENSBMSG00010018955) #30	ENSBMSG00010019090	LBX1 (ENSBMSG00010019122) #31	TLX1 (ENSBMSG00010019148) #32	KAZALD1 (ENSBMSG00010019182) #33	SFXN3 (ENSBMSG00010019238) #34	PDZD7 (ENSBMSG00010019325) #36	LZTS2 (ENSBMSG00010019532)
Pecora	ANCESTRAL SPECIES	12	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Percora_a	ANCESTRAL SPECIES	14	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Bovidae	ANCESTRAL SPECIES	24	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Caprinae	ANCESTRAL SPECIES	19	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Rambouillet Sheep	MODERN SPECIES	14	TRIM8 (ENSOARG00020006668)	SUFU (ENSOARG00020006428)	ACTR1A (ENSOARG00020006381) #7	MFSD13A (ENSOARG00020006356) #8	CUEDC2 (ENSOARG00020025536) #9	FBXL15 (ENSOARG00020025531) #10	PSD (ENSOARG00020025517) #12	NFKB2 (ENSOARG00020025505) #14	GBF1 (ENSOARG00020025489) #15	PITX3 (ENSOARG00020025475) #16	ELOVL3 (ENSOARG00020025469) #17	NOLC1 (ENSOARG00020025460) #18	PPRC1 (ENSOARG00020025416) #19	LDB1 (ENSOARG00020025397) #20	HPS6 (ENSOARG00020025382) #21	ARMH3 (ENSOARG00020025366) #22	KCNIP2 (ENSOARG00020025029) #23	OGA (ENSOARG00020024941) #24	NPM3 (ENSOARG00020024924) #25	FGF8 (ENSOARG00020024835) #26	ENSOARG00020024820	FBXW4 (ENSOARG00020024790) #27	DPCD (ENSOARG00020024779) #28	POLL (ENSOARG00020024664) #29	BTRC (ENSOARG00020024573) #30	LBX1 (ENSOARG00020024551) #31	TLX1 (ENSOARG00020024541) #32	KAZALD1 (ENSOARG00020024525) #33	SFXN3 (ENSOARG00020024496) #34	ENSOARG00020024454 #36	LZTS2 (ENSOARG00020024436)
Goat	MODERN SPECIES	18	SUFU (ENSCHIG00000021986)	ACTR1A (ENSCHIG00000014540) #7	MFSD13A (ENSCHIG00000022237) #8	CUEDC2 (ENSCHIG00000010950) #9	FBXL15 (ENSCHIG00000017809) #10	PSD (ENSCHIG00000016284) #12	NFKB2 (ENSCHIG00000019967) #14	GBF1 (ENSCHIG00000006795) #15	PITX3 (ENSCHIG00000005050) #16	ELOVL3 (ENSCHIG00000020567) #17	NOLC1 (ENSCHIG00000016755) #18	PPRC1 (ENSCHIG00000011471) #19	LDB1 (ENSCHIG00000012111) #20	ENSCHIG00000016117	HPS6 (ENSCHIG00000002581) #21	ARMH3 (ENSCHIG00000021008) #22	KCNIP2 (ENSCHIG00000023969) #23	OGA (ENSCHIG00000012695) #24	ENSCHIG00000024055 #25	FGF8 (ENSCHIG00000016976) #26	FBXW4 (ENSCHIG00000018380) #27	DPCD (ENSCHIG00000020911) #28	POLL (ENSCHIG00000003400) #29	BTRC (ENSCHIG00000016955) #30	LBX1 (ENSCHIG00000023740) #31	TLX1 (ENSCHIG00000017143) #32	KAZALD1 (ENSCHIG00000020364) #33	SFXN3 (ENSCHIG00000007598) #34	PDZD7 (ENSCHIG00000003600) #36	LZTS2 (ENSCHIG00000017763)	TWNK (ENSCHIG00000010638)
Bovinae	ANCESTRAL SPECIES	22	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Bos	ANCESTRAL SPECIES	23	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Bos_a	ANCESTRAL SPECIES	17	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Wild yak	MODERN SPECIES	124	TRIM8 (ENSBMUG00000001457)	SUFU (ENSBMUG00000001474)	ACTR1A (ENSBMUG00000001516) #7	MFSD13A (ENSBMUG00000001534) #8	CUEDC2 (ENSBMUG00000001561) #9	FBXL15 (ENSBMUG00000001578) #10	PSD (ENSBMUG00000001599) #12	NFKB2 (ENSBMUG00000001725) #14	GBF1 (ENSBMUG00000001789) #15	PITX3 (ENSBMUG00000001811) #16	ELOVL3 (ENSBMUG00000001815) #17	NOLC1 (ENSBMUG00000001853) #18	PPRC1 (ENSBMUG00000001946) #19	LDB1 (ENSBMUG00000001990) #20	HPS6 (ENSBMUG00000002004) #21	ARMH3 (ENSBMUG00000002100) #22	KCNIP2 (ENSBMUG00000002276) #23	OGA (ENSBMUG00000002507) #24	NPM3 (ENSBMUG00000002562) #25	FGF8 (ENSBMUG00000002582) #26	FBXW4 (ENSBMUG00000002636) #27	DPCD (ENSBMUG00000002662) #28	POLL (ENSBMUG00000002781) #29	BTRC (ENSBMUG00000002953) #30	TLX1 (ENSBMUG00000002998) #32	ENSBMUG00000003033 #33	SFXN3 (ENSBMUG00000003051) #34	PDZD7 (ENSBMUG00000003120) #36	LZTS2 (ENSBMUG00000003163)	TWNK (ENSBMUG00000003170)	MRPL43 (ENSBMUG00000003186)
Domestic yak	MODERN SPECIES	17	SUFU (ENSBGRG00000007124)	ACTR1A (ENSBGRG00000006965) #7	MFSD13A (ENSBGRG00000026225) #8	CUEDC2 (ENSBGRG00000026208) #9	FBXL15 (ENSBGRG00000026204) #10	PSD (ENSBGRG00000026193) #12	NFKB2 (ENSBGRG00000026174) #14	GBF1 (ENSBGRG00000026160) #15	PITX3 (ENSBGRG00000026147) #16	ELOVL3 (ENSBGRG00000026140) #17	ENSBGRG00000026136	NOLC1 (ENSBGRG00000026111) #18	PPRC1 (ENSBGRG00000026069) #19	LDB1 (ENSBGRG00000026032) #20	HPS6 (ENSBGRG00000026028) #21	ARMH3 (ENSBGRG00000026018) #22	ENSBGRG00000026004	KCNIP2 (ENSBGRG00000025831) #23	OGA (ENSBGRG00000025769) #24	NPM3 (ENSBGRG00000025751) #25	FGF8 (ENSBGRG00000025705) #26	FBXW4 (ENSBGRG00000025687) #27	DPCD (ENSBGRG00000025670) #28	POLL (ENSBGRG00000025605) #29	BTRC (ENSBGRG00000025472) #30	LBX1 (ENSBGRG00000025446) #31	TLX1 (ENSBGRG00000025436) #32	KAZALD1 (ENSBGRG00000025398) #33	SFXN3 (ENSBGRG00000025373) #34	PDZD7 (ENSBGRG00000025335) #36	LZTS2 (ENSBGRG00000025304)
Bos_b	ANCESTRAL SPECIES	23	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Hybrid Bos Indicus	MODERN SPECIES	18	TRIM8 (ENSBIXG00005013186)	SUFU (ENSBIXG00005013143)	ACTR1A (ENSBIXG00005001499) #7	MFSD13A (ENSBIXG00005013036) #8	CUEDC2 (ENSBIXG00005012994) #9	FBXL15 (ENSBIXG00005012972) #10	PSD (ENSBIXG00005012950) #12	NFKB2 (ENSBIXG00005012914) #14	GBF1 (ENSBIXG00005012824) #15	PITX3 (ENSBIXG00005012731) #16	ELOVL3 (ENSBIXG00005001400) #17	NOLC1 (ENSBIXG00005005482) #18	PPRC1 (ENSBIXG00005012646) #19	LDB1 (ENSBIXG00005012537) #20	HPS6 (ENSBIXG00005000333) #21	ARMH3 (ENSBIXG00005012509) #22	KCNIP2 (ENSBIXG00005012451) #23	OGA (ENSBIXG00005001256) #24	NPM3 (ENSBIXG00005012095) #25	FGF8 (ENSBIXG00005012077) #26	FBXW4 (ENSBIXG00005012014) #27	ENSBIXG00005001225	DPCD (ENSBIXG00005011989) #28	POLL (ENSBIXG00005000418) #29	BTRC (ENSBIXG00005011868) #30	LBX1 (ENSBIXG00005011727) #31	TLX1 (ENSBIXG00005001152) #32	KAZALD1 (ENSBIXG00005011702) #33	SFXN3 (ENSBIXG00005011674) #34	PDZD7 (ENSBIXG00005011644) #36	LZTS2 (ENSBIXG00005001135)
Cow	MODERN SPECIES	18	TRIM8 (ENSBTAG00000021071)	SUFU (ENSBTAG00000021068)	ACTR1A (ENSBTAG00000021067) #7	MFSD13A (ENSBTAG00000021065) #8	CUEDC2 (ENSBTAG00000002501) #9	FBXL15 (ENSBTAG00000002500) #10	PSD (ENSBTAG00000003580) #12	NFKB2 (ENSBTAG00000006017) #14	GBF1 (ENSBTAG00000006014) #15	PITX3 (ENSBTAG00000015702) #16	ELOVL3 (ENSBTAG00000015700) #17	NOLC1 (ENSBTAG00000007435) #18	PPRC1 (ENSBTAG00000007427) #19	LDB1 (ENSBTAG00000005780) #20	HPS6 (ENSBTAG00000021942) #21	ARMH3 (ENSBTAG00000013120) #22	KCNIP2 (ENSBTAG00000016343) #23	OGA (ENSBTAG00000016336) #24	NPM3 (ENSBTAG00000016335) #25	FGF8 (ENSBTAG00000001530) #26	ENSBTAG00000053939	FBXW4 (ENSBTAG00000003579) #27	DPCD (ENSBTAG00000003578) #28	POLL (ENSBTAG00000003576) #29	BTRC (ENSBTAG00000007476) #30	LBX1 (ENSBTAG00000002261) #31	TLX1 (ENSBTAG00000011080) #32	KAZALD1 (ENSBTAG00000011489) #33	SFXN3 (ENSBTAG00000005015) #34	ENSBTAG00000016928 #36	ENSBTAG00000039834 #36
American bison	MODERN SPECIES	3316	SUFU (ENSBBBG00000022501)	ACTR1A (ENSBBBG00000022481) #7	MFSD13A (ENSBBBG00000005916) #8	CUEDC2 (ENSBBBG00000022416) #9	FBXL15 (ENSBBBG00000022406) #10	PSD (ENSBBBG00000022390) #12	ENSBBBG00000022351	NFKB2 (ENSBBBG00000005894) #14	GBF1 (ENSBBBG00000022275) #15	PITX3 (ENSBBBG00000022213) #16	ELOVL3 (ENSBBBG00000022200) #17	NOLC1 (ENSBBBG00000005854) #18	PPRC1 (ENSBBBG00000007281) #19	LDB1 (ENSBBBG00000005829) #20	HPS6 (ENSBBBG00000022074) #21	ARMH3 (ENSBBBG00000007684) #22	KCNIP2 (ENSBBBG00000022027) #23	OGA (ENSBBBG00000005781) #24	NPM3 (ENSBBBG00000021685) #25	FGF8 (ENSBBBG00000005761) #26	FBXW4 (ENSBBBG00000021667) #27	DPCD (ENSBBBG00000021651) #28	POLL (ENSBBBG00000021635) #29	BTRC (ENSBBBG00000021525) #30	LBX1 (ENSBBBG00000021437) #31	TLX1 (ENSBBBG00000021434) #32	KAZALD1 (ENSBBBG00000021426) #33	SFXN3 (ENSBBBG00000021411) #34	PDZD7 (ENSBBBG00000021381) #36	LZTS2 (ENSBBBG00000005695)	TWNK (ENSBBBG00000008401)
Siberian musk deer	MODERN SPECIES	1162	TRIM8 (ENSMMSG00000023486)	SUFU (ENSMMSG00000023494)	ACTR1A (ENSMMSG00000023508) #7	MFSD13A (ENSMMSG00000023523) #8	CUEDC2 (ENSMMSG00000023534) #9	FBXL15 (ENSMMSG00000023546) #10	PSD (ENSMMSG00000023561) #12	NFKB2 (ENSMMSG00000023577) #14	GBF1 (ENSMMSG00000023605) #15	PITX3 (ENSMMSG00000023635) #16	ELOVL3 (ENSMMSG00000023638) #17	NOLC1 (ENSMMSG00000023644) #18	PPRC1 (ENSMMSG00000023667) #19	LDB1 (ENSMMSG00000023714) #20	HPS6 (ENSMMSG00000023722) #21	ARMH3 (ENSMMSG00000023729) #22	KCNIP2 (ENSMMSG00000023762) #23	OGA (ENSMMSG00000023879) #24	NPM3 (ENSMMSG00000023905) #25	FGF8 (ENSMMSG00000016398) #26	FBXW4 (ENSMMSG00000016591) #27	DPCD (ENSMMSG00000016659) #28	POLL (ENSMMSG00000016722) #29	BTRC (ENSMMSG00000016899) #30	ENSMMSG00000017075	ENSMMSG00000017086	LBX1 (ENSMMSG00000017109) #31	ENSMMSG00000017131	TLX1 (ENSMMSG00000017162) #32	KAZALD1 (ENSMMSG00000017194) #33	SFXN3 (ENSMMSG00000017226) #34
Yarkand deer	MODERN SPECIES	6	SUFU (ENSCHYG00000014200)	ACTR1A (ENSCHYG00000014018) #7	MFSD13A (ENSCHYG00000013882) #8	CUEDC2 (ENSCHYG00000013695) #9	FBXL15 (ENSCHYG00000013637) #10	PSD (ENSCHYG00000013510) #12	NFKB2 (ENSCHYG00000013218) #14	ENSCHYG00000013154	GBF1 (ENSCHYG00000012906) #15	PITX3 (ENSCHYG00000012861) #16	ELOVL3 (ENSCHYG00000012788) #17	NOLC1 (ENSCHYG00000012710) #18	PPRC1 (ENSCHYG00000012117) #19	LDB1 (ENSCHYG00000011992) #20	HPS6 (ENSCHYG00000011978) #21	ARMH3 (ENSCHYG00000011524) #22	KCNIP2 (ENSCHYG00000011315) #23	OGA (ENSCHYG00000011095) #24	NPM3 (ENSCHYG00000011000) #25	FGF8 (ENSCHYG00000010585) #26	FBXW4 (ENSCHYG00000010417) #27	DPCD (ENSCHYG00000010353) #28	POLL (ENSCHYG00000010092) #29	BTRC (ENSCHYG00000009464) #30	LBX1 (ENSCHYG00000009391) #31	TLX1 (ENSCHYG00000009316) #32	KAZALD1 (ENSCHYG00000009247) #33	SFXN3 (ENSCHYG00000008801) #34	PDZD7 (ENSCHYG00000008700) #36	LZTS2 (ENSCHYG00000008636)	TWNK (ENSCHYG00000008578)
Camelidae	ANCESTRAL SPECIES	4	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Arabian camel	MODERN SPECIES	2	ACTR1A (ENSCDRG00005013729) #7	MFSD13A (ENSCDRG00005013849) #8	C10orf95 (ENSCDRG00005013904)	CUEDC2 (ENSCDRG00005013933) #9	FBXL15 (ENSCDRG00005014048) #10	PSD (ENSCDRG00005014081) #12	NFKB2 (ENSCDRG00005014133) #14	GBF1 (ENSCDRG00005014219) #15	PITX3 (ENSCDRG00005014430) #16	ELOVL3 (ENSCDRG00005014459) #17	ENSCDRG00005014525	NOLC1 (ENSCDRG00005014563) #18	PPRC1 (ENSCDRG00005014648) #19	LDB1 (ENSCDRG00005014831) #20	HPS6 (ENSCDRG00005014897) #21	ARMH3 (ENSCDRG00005014932) #22	KCNIP2 (ENSCDRG00005015279) #23	OGA (ENSCDRG00005017195) #24	NPM3 (ENSCDRG00005017294) #25	FGF8 (ENSCDRG00005017350) #26	FBXW4 (ENSCDRG00005017631) #27	DPCD (ENSCDRG00005017701) #28	POLL (ENSCDRG00005017726) #29	BTRC (ENSCDRG00005017970) #30	LBX1 (ENSCDRG00005018112) #31	TLX1 (ENSCDRG00005018131) #32	KAZALD1 (ENSCDRG00005018151) #33	SFXN3 (ENSCDRG00005018164) #34	ENSCDRG00005018196 #36	ENSCDRG00005018229 #36	LZTS2 (ENSCDRG00005018247)
Alpaca	MODERN SPECIES	1686																ARMH3 (ENSVPAG00000003122) #22	OGA (ENSVPAG00000003121) #24	NPM3 (ENSVPAG00000003120) #25	ENSVPAG00000003119 #27	DPCD (ENSVPAG00000003117) #28	POLL (ENSVPAG00000003115) #29	BTRC (ENSVPAG00000003111) #30
Laurasiatheria_b	ANCESTRAL SPECIES	15	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT01100000267139 #11	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00990000203892 #35	ENSGT00940000154078.a.a
Laurasiatheria_c	ANCESTRAL SPECIES	15	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00990000203892 #35	ENSGT00940000154078.a.a
Chiroptera	ANCESTRAL SPECIES	6	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00990000203892 #35	ENSGT00940000154078.a.a
Megabat	MODERN SPECIES	3921												NOLC1 (ENSPVAG00000004050) #18	PPRC1 (ENSPVAG00000004048) #19	LDB1 (ENSPVAG00000004047) #20	HPS6 (ENSPVAG00000004046) #21	ARMH3 (ENSPVAG00000004043) #22	KCNIP2 (ENSPVAG00000004042) #23	OGA (ENSPVAG00000004041) #24	NPM3 (ENSPVAG00000004038) #25	FGF8 (ENSPVAG00000004035) #26
Microchiroptera	ANCESTRAL SPECIES	5	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00990000203892 #35	ENSGT00940000154078.a.a
Microbat	MODERN SPECIES	1099	TRIM8 (ENSMLUG00000012594)	SUFU (ENSMLUG00000012590)	ACTR1A (ENSMLUG00000006356) #7	MFSD13A (ENSMLUG00000006346) #8	CUEDC2 (ENSMLUG00000006328) #9	FBXL15 (ENSMLUG00000006312) #10	PSD (ENSMLUG00000006298) #12	NFKB2 (ENSMLUG00000006287) #14	GBF1 (ENSMLUG00000006247) #15	ENSMLUG00000028577	PITX3 (ENSMLUG00000023193) #16	ELOVL3 (ENSMLUG00000028990) #17	NOLC1 (ENSMLUG00000001726) #18	PPRC1 (ENSMLUG00000006217) #19	LDB1 (ENSMLUG00000009237) #20	ARMH3 (ENSMLUG00000004996) #22	KCNIP2 (ENSMLUG00000004987) #23	OGA (ENSMLUG00000004970) #24	NPM3 (ENSMLUG00000004961) #25	FGF8 (ENSMLUG00000004959) #26	FBXW4 (ENSMLUG00000004952) #27	DPCD (ENSMLUG00000004947) #28	POLL (ENSMLUG00000004944) #29	BTRC (ENSMLUG00000004932) #30
Greater horseshoe bat	MODERN SPECIES	7	SUFU (ENSRFEG00010017585)	ACTR1A (ENSRFEG00010017647) #7	MFSD13A (ENSRFEG00010017701) #8	C10orf95 (ENSRFEG00010017725)	CUEDC2 (ENSRFEG00010017742) #9	FBXL15 (ENSRFEG00010017762) #10	PSD (ENSRFEG00010017833) #12	NFKB2 (ENSRFEG00010017892) #14	GBF1 (ENSRFEG00010017963) #15	PITX3 (ENSRFEG00010018052) #16	ELOVL3 (ENSRFEG00010018094) #17	NOLC1 (ENSRFEG00010018127) #18	PPRC1 (ENSRFEG00010018145) #19	LDB1 (ENSRFEG00010018232) #20	HPS6 (ENSRFEG00010018300) #21	ARMH3 (ENSRFEG00010005361) #22	ENSRFEG00010005540	KCNIP2 (ENSRFEG00010005717) #23	OGA (ENSRFEG00010005973) #24	NPM3 (ENSRFEG00010006055) #25	FGF8 (ENSRFEG00010006132) #26	FBXW4 (ENSRFEG00010006255) #27	DPCD (ENSRFEG00010006295) #28	POLL (ENSRFEG00010006332) #29	BTRC (ENSRFEG00010006446) #30	ENSRFEG00010006625	LBX1 (ENSRFEG00010006637) #31	ENSRFEG00010006650	TLX1 (ENSRFEG00010006681) #32	KAZALD1 (ENSRFEG00010006705) #33	SFXN3 (ENSRFEG00010006745) #34
Equus	ANCESTRAL SPECIES	9	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925.l #15	ENSGT01050000244965.a.d #17	ENSGT00940000156925.k #15	ENSGT00940000161801 #16	ENSGT01050000244965.a.c #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Donkey	MODERN SPECIES	11	FBXL15 (ENSEASG00005015235) #10	PSD (ENSEASG00005015237) #12	NFKB2 (ENSEASG00005015242) #14	GBF1 (ENSEASG00005015245) #15	ENSEASG00005027010 #17	ENSEASG00005038682 #16	ENSEASG00005037872 #17	ENSEASG00005030491 #16	ENSEASG00005037516 #17	ENSEASG00005034292 #16	ENSEASG00005010383 #17	NOLC1 (ENSEASG00005007519) #18	PPRC1 (ENSEASG00005007583) #19	LDB1 (ENSEASG00005007592) #20	HPS6 (ENSEASG00005033362) #21	ARMH3 (ENSEASG00005007687) #22	KCNIP2 (ENSEASG00005007921) #23	OGA (ENSEASG00005008004) #24	NPM3 (ENSEASG00005008834) #25	FGF8 (ENSEASG00005008843) #26	FBXW4 (ENSEASG00005008860) #27	DPCD (ENSEASG00005008874) #28	POLL (ENSEASG00005008879) #29	BTRC (ENSEASG00005008887) #30	LBX1 (ENSEASG00005034916) #31	TLX1 (ENSEASG00005008902) #32	KAZALD1 (ENSEASG00005008906) #33	SFXN3 (ENSEASG00005008915) #34	PDZD7 (ENSEASG00005038524) #36	LZTS2 (ENSEASG00005008920)	TWNK (ENSEASG00005008922)
Horse	MODERN SPECIES		TRIM8 (ENSECAG00000016770)	SUFU (ENSECAG00000019583)	ACTR1A (ENSECAG00000024503) #7	MFSD13A (ENSECAG00000014757) #8	PSD (ENSECAG00000007172) #12	FBXL15 (ENSECAG00000000576) #10	NFKB2 (ENSECAG00000019593) #14	GBF1 (ENSECAG00000023593) #15	ENSECAG00000047204 #15	PITX3 (ENSECAG00000022294) #16	ELOVL3 (ENSECAG00000023578) #17	NOLC1 (ENSECAG00000052236) #18	PPRC1 (ENSECAG00000009482) #19	LDB1 (ENSECAG00000012948) #20	HPS6 (ENSECAG00000004595) #21	ARMH3 (ENSECAG00000020347) #22	OGA (ENSECAG00000018731) #24	NPM3 (ENSECAG00000007524) #25	FGF8 (ENSECAG00000037372) #26	FBXW4 (ENSECAG00000020477) #27	DPCD (ENSECAG00000009848) #28	POLL (ENSECAG00000015282) #29	BTRC (ENSECAG00000022888) #30	LBX1 (ENSECAG00000032593) #31	TLX1 (ENSECAG00000013342) #32	KAZALD1 (ENSECAG00000013608) #33	SFXN3 (ENSECAG00000019285) #34	PDZD7 (ENSECAG00000012183) #36	LZTS2 (ENSECAG00000013288)	TWNK (ENSECAG00000017734)	MRPL43 (ENSECAG00000038363)
Carnivora	ANCESTRAL SPECIES	16	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT01100000267139 #11	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Felidae	ANCESTRAL SPECIES	14	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Panthera	ANCESTRAL SPECIES	8	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Panthera_a	ANCESTRAL SPECIES	9	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
leopard	MODERN SPECIES	33	ENSPPRG00000009259	SUFU (ENSPPRG00000010512)	ACTR1A (ENSPPRG00000011443) #7	MFSD13A (ENSPPRG00000011829) #8	C10orf95 (ENSPPRG00000019037)	CUEDC2 (ENSPPRG00000012133) #9	FBXL15 (ENSPPRG00000012372) #10	PSD (ENSPPRG00000016125) #12	NFKB2 (ENSPPRG00000024177) #14	GBF1 (ENSPPRG00000022832) #15	PITX3 (ENSPPRG00000000459) #16	ELOVL3 (ENSPPRG00000000726) #17	NOLC1 (ENSPPRG00000003072) #18	PPRC1 (ENSPPRG00000004274) #19	LDB1 (ENSPPRG00000004903) #20	ARMH3 (ENSPPRG00000006816) #22	KCNIP2 (ENSPPRG00000008687) #23	OGA (ENSPPRG00000012421) #24	ENSPPRG00000012611 #25	FGF8 (ENSPPRG00000013495) #26	FBXW4 (ENSPPRG00000014010) #27	DPCD (ENSPPRG00000014395) #28	POLL (ENSPPRG00000015944) #29	BTRC (ENSPPRG00000019213) #30	LBX1 (ENSPPRG00000019906) #31	TLX1 (ENSPPRG00000021686) #32	KAZALD1 (ENSPPRG00000025091) #33	SFXN3 (ENSPPRG00000025064) #34	PDZD7 (ENSPPRG00000024966) #36	LZTS2 (ENSPPRG00000024851)	TWNK (ENSPPRG00000024792)
lion	MODERN SPECIES	11	SUFU (ENSPLOG00000017511)	ACTR1A (ENSPLOG00000017687) #7	MFSD13A (ENSPLOG00000017752) #8	C10orf95 (ENSPLOG00000017781)	CUEDC2 (ENSPLOG00000017803) #9	FBXL15 (ENSPLOG00000017839) #10	PSD (ENSPLOG00000017905) #12	NFKB2 (ENSPLOG00000018109) #14	GBF1 (ENSPLOG00000018201) #15	PITX3 (ENSPLOG00000018227) #16	ELOVL3 (ENSPLOG00000018268) #17	NOLC1 (ENSPLOG00000018322) #18	PPRC1 (ENSPLOG00000018611) #19	LDB1 (ENSPLOG00000018677) #20	HPS6 (ENSPLOG00000018787) #21	ARMH3 (ENSPLOG00000018843) #22	ENSPLOG00000019012	KCNIP2 (ENSPLOG00000004987) #23	OGA (ENSPLOG00000005085) #24	NPM3 (ENSPLOG00000005157) #25	FGF8 (ENSPLOG00000005187) #26	FBXW4 (ENSPLOG00000005224) #27	DPCD (ENSPLOG00000005244) #28	POLL (ENSPLOG00000005264) #29	BTRC (ENSPLOG00000005315) #30	LBX1 (ENSPLOG00000005507) #31	TLX1 (ENSPLOG00000005518) #32	KAZALD1 (ENSPLOG00000005533) #33	SFXN3 (ENSPLOG00000005555) #34	ENSPLOG00000005593 #36	LZTS2 (ENSPLOG00000005627)
Tiger	MODERN SPECIES	136	ENSPTIG00000005748	TRIM8 (ENSPTIG00000020475)	ENSPTIG00000020388	SUFU (ENSPTIG00000019963)	ACTR1A (ENSPTIG00000019111) #7	MFSD13A (ENSPTIG00000018951) #8	CUEDC2 (ENSPTIG00000018568) #9	PSD (ENSPTIG00000018116) #12	ENSPTIG00000017841 #14	GBF1 (ENSPTIG00000017555) #15	ENSPTIG00000017198 #16	ELOVL3 (ENSPTIG00000016855) #17	NOLC1 (ENSPTIG00000014862) #18	PPRC1 (ENSPTIG00000013709) #19	LDB1 (ENSPTIG00000012571) #20	ARMH3 (ENSPTIG00000010893) #22	KCNIP2 (ENSPTIG00000009209) #23	OGA (ENSPTIG00000005989) #24	NPM3 (ENSPTIG00000005390) #25	FBXW4 (ENSPTIG00000004575) #27	DPCD (ENSPTIG00000000972) #28	POLL (ENSPTIG00000021663) #29	BTRC (ENSPTIG00000021271) #30	LBX1 (ENSPTIG00000020484) #31	SFXN3 (ENSPTIG00000020192) #34	ENSPTIG00000019929 #36	TWNK (ENSPTIG00000019662)	MRPL43 (ENSPTIG00000019483)	SEMA4G (ENSPTIG00000018207)	SLF2 (ENSPTIG00000017770)	PAX2 (ENSPTIG00000015726)
Cat	MODERN SPECIES	242	ARL3 (ENSFCAG00000001251)	TRIM8 (ENSFCAG00000028572)	SUFU (ENSFCAG00000001249)	ACTR1A (ENSFCAG00000001248) #7	MFSD13A (ENSFCAG00000023881) #8	CD2H10orf95 (ENSFCAG00000042728)	CUEDC2 (ENSFCAG00000001245) #9	FBXL15 (ENSFCAG00000001244) #10	PSD (ENSFCAG00000001243) #12	NFKB2 (ENSFCAG00000001242) #14	PITX3 (ENSFCAG00000026758) #16	GBF1 (ENSFCAG00000001241) #15	PPRC1 (ENSFCAG00000001238) #19	LDB1 (ENSFCAG00000001236) #20	HPS6 (ENSFCAG00000028998) #21	ARMH3 (ENSFCAG00000013244) #22	KCNIP2 (ENSFCAG00000013243) #23	OGA (ENSFCAG00000007179) #24	NPM3 (ENSFCAG00000007178) #25	FGF8 (ENSFCAG00000007177) #26	FBXW4 (ENSFCAG00000015703) #27	DPCD (ENSFCAG00000037081) #28	POLL (ENSFCAG00000015701) #29	BTRC (ENSFCAG00000015700) #30	LBX1 (ENSFCAG00000034106) #31	TLX1 (ENSFCAG00000046742) #32	KAZALD1 (ENSFCAG00000038365) #33	SFXN3 (ENSFCAG00000015697) #34	PDZD7 (ENSFCAG00000015696) #36	LZTS2 (ENSFCAG00000015695)	TWNK (ENSFCAG00000015694)
Caniformia	ANCESTRAL SPECIES	13	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT01100000267139 #11	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Canidae	ANCESTRAL SPECIES	16	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Canis_lupus	ANCESTRAL SPECIES	20	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Dog	MODERN SPECIES	20	SUFU (ENSCAFG00845025024)	ACTR1A (ENSCAFG00845024750) #7	MFSD13A (ENSCAFG00845024507) #8	C28H10orf95 (ENSCAFG00845024439)	CUEDC2 (ENSCAFG00845024377) #9	FBXL15 (ENSCAFG00845024340) #10	PSD (ENSCAFG00845023806) #12	NFKB2 (ENSCAFG00845023626) #14	GBF1 (ENSCAFG00845023390) #15	PITX3 (ENSCAFG00845023314) #16	ELOVL3 (ENSCAFG00845023260) #17	NOLC1 (ENSCAFG00845023156) #18	PPRC1 (ENSCAFG00845022994) #19	LDB1 (ENSCAFG00845022765) #20	HPS6 (ENSCAFG00845022716) #21	ARMH3 (ENSCAFG00845022019) #22	KCNIP2 (ENSCAFG00845021527) #23	OGA (ENSCAFG00845021307) #24	OGA (ENSCAFG00845021211) #25	FGF8 (ENSCAFG00845021086) #26	FBXW4 (ENSCAFG00845020929) #27	DPCD (ENSCAFG00845020872) #28	POLL (ENSCAFG00845020759) #29	BTRC (ENSCAFG00845020497) #30	LBX1 (ENSCAFG00845020416) #31	TLX1 (ENSCAFG00845020381) #32	KAZALD1 (ENSCAFG00845020241) #33	SFXN3 (ENSCAFG00845020173) #34	PDZD7 (ENSCAFG00845019707) #36	LZTS2 (ENSCAFG00845019571)	TWNK (ENSCAFG00845019518)
Dingo	MODERN SPECIES	165	TRIM8 (ENSCAFG00020010248)	SUFU (ENSCAFG00020010246)	ACTR1A (ENSCAFG00020010244) #7	MFSD13A (ENSCAFG00020010240) #8	CUEDC2 (ENSCAFG00020010222) #9	FBXL15 (ENSCAFG00020010220) #10	PSD (ENSCAFG00020010215) #12	NFKB2 (ENSCAFG00020010204) #14	ENSCAFG00020010159 #15	ENSCAFG00020010157 #15	PITX3 (ENSCAFG00020010150) #16	ELOVL3 (ENSCAFG00020010148) #17	NOLC1 (ENSCAFG00020010146) #18	PPRC1 (ENSCAFG00020010030) #19	LDB1 (ENSCAFG00020010016) #20	ARMH3 (ENSCAFG00020009246) #22	KCNIP2 (ENSCAFG00020009192) #23	OGA (ENSCAFG00020009186) #24	NPM3 (ENSCAFG00020009185) #25	FGF8 (ENSCAFG00020009181) #26	FBXW4 (ENSCAFG00020009166) #27	DPCD (ENSCAFG00020009157) #28	POLL (ENSCAFG00020009154) #29	BTRC (ENSCAFG00020009146) #30	LBX1 (ENSCAFG00020009135) #31	TLX1 (ENSCAFG00020009130) #32	KAZALD1 (ENSCAFG00020009128) #33	SFXN3 (ENSCAFG00020009123) #34	ENSCAFG00020009067 #36	ENSCAFG00020009061 #36	LZTS2 (ENSCAFG00020009057)
Red fox	MODERN SPECIES		TRIM8 (ENSVVUG00000004218)	SUFU (ENSVVUG00000004206)	ACTR1A (ENSVVUG00000003644) #7	MFSD13A (ENSVVUG00000003606) #8	CUEDC2 (ENSVVUG00000003580) #9	FBXL15 (ENSVVUG00000003576) #10	PSD (ENSVVUG00000003561) #12	NFKB2 (ENSVVUG00000002942) #14	GBF1 (ENSVVUG00000002840) #15	PITX3 (ENSVVUG00000002824) #16	ELOVL3 (ENSVVUG00000002813) #17	NOLC1 (ENSVVUG00000002661) #18	LDB1 (ENSVVUG00000002609) #20	PPRC1 (ENSVVUG00000002566) #19	ENSVVUG00000002549	ARMH3 (ENSVVUG00000002381) #22	KCNIP2 (ENSVVUG00000001064) #23	OGA (ENSVVUG00000000965) #24	NPM3 (ENSVVUG00000000945) #25	FGF8 (ENSVVUG00000000784) #26	FBXW4 (ENSVVUG00000000770) #27	DPCD (ENSVVUG00000000749) #28	POLL (ENSVVUG00000000738) #29	BTRC (ENSVVUG00000000703) #30	LBX1 (ENSVVUG00000000689) #31	TLX1 (ENSVVUG00000000649) #32	KAZALD1 (ENSVVUG00000000631) #33	SFXN3 (ENSVVUG00000000615) #34	PDZD7 (ENSVVUG00000000597) #36	LZTS2 (ENSVVUG00000000572)	TWNK (ENSVVUG00000000429)
Caniformia_b	ANCESTRAL SPECIES	10	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT01100000267139 #11	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Mustelinae	ANCESTRAL SPECIES	29	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00910000145900	ENSGT00390000014513.d #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Ferret	MODERN SPECIES	187	TRIM8 (ENSMPUG00000016866)	SUFU (ENSMPUG00000016867)	ACTR1A (ENSMPUG00000016868) #7	ENSMPUG00000016870	FBXL15 (ENSMPUG00000016872) #10	ENSMPUG00000016874 #9	PSD (ENSMPUG00000016879) #12	NFKB2 (ENSMPUG00000016882) #14	GBF1 (ENSMPUG00000016883) #15	PITX3 (ENSMPUG00000016885) #16	ELOVL3 (ENSMPUG00000016886) #17	NOLC1 (ENSMPUG00000016887) #18	PPRC1 (ENSMPUG00000016888) #19	LDB1 (ENSMPUG00000016889) #20	HPS6 (ENSMPUG00000020133) #21	ARMH3 (ENSMPUG00000016890) #22	KCNIP2 (ENSMPUG00000016892) #23	OGA (ENSMPUG00000016893) #24	NPM3 (ENSMPUG00000016894) #25	FGF8 (ENSMPUG00000016897) #26	FBXW4 (ENSMPUG00000016906) #27	DPCD (ENSMPUG00000016919) #28	POLL (ENSMPUG00000016920) #29	BTRC (ENSMPUG00000016923) #30	LBX1 (ENSMPUG00000016926) #31	TLX1 (ENSMPUG00000016927) #32	KAZALD1 (ENSMPUG00000016929) #33	SFXN3 (ENSMPUG00000016930) #34	PDZD7 (ENSMPUG00000016931) #36	LZTS2 (ENSMPUG00000016937)	TWNK (ENSMPUG00000016941)
American mink	MODERN SPECIES	25	ENSNVIG00000017350	ACTR1A (ENSNVIG00000017357) #7	MFSD13A (ENSNVIG00000017424) #8	C10orf95 (ENSNVIG00000017436)	CUEDC2 (ENSNVIG00000017446) #9	FBXL15 (ENSNVIG00000017463) #10	PSD (ENSNVIG00000017477) #12	NFKB2 (ENSNVIG00000017504) #14	GBF1 (ENSNVIG00000017606) #15	PITX3 (ENSNVIG00000017782) #16	ELOV3 (ENSNVIG00000017791) #17	NOLC1 (ENSNVIG00000017826) #18	PPRC1 (ENSNVIG00000017896) #19	LDB1 (ENSNVIG00000017913) #20	HPS6 (ENSNVIG00000017937) #21	CJ076 (ENSNVIG00000017939) #22	ENSNVIG00000018006	KCIP2 (ENSNVIG00000018034) #23	OGA (ENSNVIG00000018264) #24	NPM3 (ENSNVIG00000018364) #25	FGF8 (ENSNVIG00000018394) #26	FBXW4 (ENSNVIG00000018442) #27	DPCD (ENSNVIG00000018457) #28	POLL (ENSNVIG00000018469) #29	ENSNVIG00000018498 #30	LBX1 (ENSNVIG00000018557) #31	ENSNVIG00000018563	TLX1 (ENSNVIG00000018572) #32	KAZALD1 (ENSNVIG00000018579) #33	SFXN3 (ENSNVIG00000018587) #34	ENSNVIG00000018594 #36
Ursidae	ANCESTRAL SPECIES	5	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT01100000267139 #11	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Giant Panda	MODERN SPECIES	16	SUFU (ENSAMEG00000017809)	ACTR1A (ENSAMEG00000017796) #7	ENSAMEG00000017791	CUEDC2 (ENSAMEG00000017783) #9	FBXL15 (ENSAMEG00000017780) #10	PSD (ENSAMEG00000017765) #12	NFKB2 (ENSAMEG00000017735) #14	ENSAMEG00000028274	GBF1 (ENSAMEG00000017700) #15	PITX3 (ENSAMEG00000017698) #16	ELOVL3 (ENSAMEG00000026429) #17	NOLC1 (ENSAMEG00000017687) #18	PPRC1 (ENSAMEG00000017685) #19	LDB1 (ENSAMEG00000017674) #20	HPS6 (ENSAMEG00000020223) #21	ARMH3 (ENSAMEG00000017666) #22	KCNIP2 (ENSAMEG00000017648) #23	OGA (ENSAMEG00000017642) #24	ENSAMEG00000017639 #25	FGF8 (ENSAMEG00000017635) #26	FBXW4 (ENSAMEG00000017630) #27	DPCD (ENSAMEG00000017626) #28	POLL (ENSAMEG00000017616) #29	BTRC (ENSAMEG00000017610) #30	LBX1 (ENSAMEG00000025161) #31	TLX1 (ENSAMEG00000017604) #32	KAZALD1 (ENSAMEG00000017599) #33	SFXN3 (ENSAMEG00000017589) #34	PDZD7 (ENSAMEG00000017588) #36	LZTS2 (ENSAMEG00000017581)	TWNK (ENSAMEG00000017575)
Ursus	ANCESTRAL SPECIES	7	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT01100000267139 #11	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495	ENSGT00390000015375
Polar bear	MODERN SPECIES	92	ARL3 (ENSUMAG00000023500)	TRIM8 (ENSUMAG00000023499)	SUFU (ENSUMAG00000023464)	ACTR1A (ENSUMAG00000023448) #7	ENSUMAG00000023438	CUEDC2 (ENSUMAG00000023434) #9	PSD (ENSUMAG00000023417) #12	NFKB2 (ENSUMAG00000023323) #14	GBF1 (ENSUMAG00000023098) #15	ELOVL3 (ENSUMAG00000023071) #17	NOLC1 (ENSUMAG00000023063) #18	PPRC1 (ENSUMAG00000023041) #19	LDB1 (ENSUMAG00000023036) #20	HPS6 (ENSUMAG00000023035) #21	ENSUMAG00000023033	ARMH3 (ENSUMAG00000023027) #22	KCNIP2 (ENSUMAG00000023021) #23	OGA (ENSUMAG00000023018) #24	NPM3 (ENSUMAG00000023016) #25	FBXW4 (ENSUMAG00000023013) #27	DPCD (ENSUMAG00000023012) #28	POLL (ENSUMAG00000023008) #29	BTRC (ENSUMAG00000023002) #30	SFXN3 (ENSUMAG00000022989) #34	ENSUMAG00000022970 #36	ENSUMAG00000022963 #36	TWNK (ENSUMAG00000022959)	MRPL43 (ENSUMAG00000022958)	ENSUMAG00000022956	SLF2 (ENSUMAG00000022840)	PAX2 (ENSUMAG00000022813)
American black bear	DUPLICATION
American black bear	MODERN SPECIES	772									GBF1 (ENSUAMG00000028062) #15	PITX3 (ENSUAMG00000028061) #16	ELOVL3 (ENSUAMG00000028060) #17	NOLC1 (ENSUAMG00000028059) #18	PPRC1 (ENSUAMG00000028058) #19	LDB1 (ENSUAMG00000028057) #20	HPS6 (ENSUAMG00000028056) #21	ARMH3 (ENSUAMG00000028010) #22
American black bear	MODERN SPECIES	170																ENSUAMG00000023912 #22	OGA (ENSUAMG00000023914) #24	NPM3 (ENSUAMG00000024072) #25	FBXW4 (ENSUAMG00000024073) #27	DPCD (ENSUAMG00000024074) #28	POLL (ENSUAMG00000024075) #29	BTRC (ENSUAMG00000024076) #30	LBX1 (ENSUAMG00000024077) #31	TLX1 (ENSUAMG00000024078) #32	KAZALD1 (ENSUAMG00000024080) #33
Atlantogenata	ANCESTRAL SPECIES	10	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Xenarthra	ANCESTRAL SPECIES	903														ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000159518 #26
Sloth	MODERN SPECIES	1796																ARMH3 (ENSCHOG00000004977) #22
Armadillo	MODERN SPECIES	308													LDB1 (ENSDNOG00000032439) #20	ENSDNOG00000036024	HPS6 (ENSDNOG00000025542) #21	ARMH3 (ENSDNOG00000018889) #22	KCNIP2 (ENSDNOG00000018883) #23	OGA (ENSDNOG00000018879) #24	FGF8 (ENSDNOG00000037724) #26
Afrotheria	ANCESTRAL SPECIES	4	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Afrotheria_a	ANCESTRAL SPECIES	4	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a	ENSGT00390000004495
Elephant	MODERN SPECIES	3	TRIM8 (ENSLAFG00000011454)	SUFU (ENSLAFG00000005068)	ACTR1A (ENSLAFG00000005064) #7	MFSD13A (ENSLAFG00000005063) #8	CUEDC2 (ENSLAFG00000006828) #9	FBXL15 (ENSLAFG00000006822) #10	PSD (ENSLAFG00000006814) #12	NFKB2 (ENSLAFG00000006805) #14	GBF1 (ENSLAFG00000006789) #15	PITX3 (ENSLAFG00000006787) #16	ELOVL3 (ENSLAFG00000006785) #17	NOLC1 (ENSLAFG00000014245) #18	PPRC1 (ENSLAFG00000014232) #19	LDB1 (ENSLAFG00000023028) #20	HPS6 (ENSLAFG00000026941) #21	ARMH3 (ENSLAFG00000016076) #22	KCNIP2 (ENSLAFG00000016066) #23	OGA (ENSLAFG00000016050) #24	NPM3 (ENSLAFG00000023022) #25	FGF8 (ENSLAFG00000028373) #26	FBXW4 (ENSLAFG00000009480) #27	DPCD (ENSLAFG00000009478) #28	POLL (ENSLAFG00000009472) #29	BTRC (ENSLAFG00000017122) #30	LBX1 (ENSLAFG00000012214) #31	TLX1 (ENSLAFG00000004179) #32	ENSLAFG00000030369	KAZALD1 (ENSLAFG00000004171) #33	SFXN3 (ENSLAFG00000012767) #34	ENSLAFG00000026596 #36	ENSLAFG00000032509 #36
Hyrax	MODERN SPECIES	783																ARMH3 (ENSPCAG00000011786) #22	KCNIP2 (ENSPCAG00000011723) #23	OGA (ENSPCAG00000011547) #24	FGF8 (ENSPCAG00000011483) #26
Tenrec	MODERN SPECIES	1053													ENSETEG00000006332 #20	HPS6 (ENSETEG00000006328) #21	TPPP2 (ENSETEG00000006327)	ARMH3 (ENSETEG00000006317) #22	ENSETEG00000006315 #23	OGA (ENSETEG00000006311) #24	NPM3 (ENSETEG00000006307) #25
Marsupialia	ANCESTRAL SPECIES		ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00990000203892 #35	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a.k #34	ENSGT00990000203892 #35	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Diprotodontia	ANCESTRAL SPECIES	6	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a.k #34	ENSGT00990000203892 #35	ENSGT00940000160813	ENSGT00940000158048
Diprotodontia_a	ANCESTRAL SPECIES	7	ENSGT00940000157919	ENSGT00390000009747	ENSGT00940000155782 #7	ENSGT00940000160317 #8	ENSGT00390000014513 #9	ENSGT00940000160250 #10	ENSGT00940000155061.a.b #12	ENSGT00940000160968 #14	ENSGT00940000156925 #15	ENSGT00940000161801 #16	ENSGT01050000244965.a #17	ENSGT00730000111092 #18	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a.k #34	ENSGT00990000203892 #35	ENSGT00940000160813	ENSGT00940000158048
Common wonbat	MODERN SPECIES	581	TRIM8 (ENSVURG00010001450)	SUFU (ENSVURG00010001480)	ACTR1A (ENSVURG00010001535) #7	MFSD13A (ENSVURG00010001576) #8	CUEDC2 (ENSVURG00010001585) #9	FBXL15 (ENSVURG00010001595) #10	PSD (ENSVURG00010001616) #12	NFKB2 (ENSVURG00010001689) #14	GBF1 (ENSVURG00010001734) #15	PITX3 (ENSVURG00010001798) #16	ELOVL3 (ENSVURG00010001812) #17	NOLC1 (ENSVURG00010001912) #18	ENSVURG00010001928 #19	LDB1 (ENSVURG00010001956) #20	HPS6 (ENSVURG00010002006) #21	ARMH3 (ENSVURG00010002048) #22	KCNIP2 (ENSVURG00010002189) #23	OGA (ENSVURG00010002511) #24	NPM3 (ENSVURG00010002534) #25	FGF8 (ENSVURG00010002548) #26	ENSVURG00010002614 #27	DPCD (ENSVURG00010002630) #28	POLL (ENSVURG00010002645) #29	BTRC (ENSVURG00010002745) #30	LBX1 (ENSVURG00010002823) #31	TLX1 (ENSVURG00010002839) #32	KAZALD1 (ENSVURG00010002921) #33	ENSVURG00010002939 #36	LZTS2 (ENSVURG00010002997)	TWNK (ENSVURG00010003014)	MRPL43 (ENSVURG00010003032)
koala	MODERN SPECIES	6	TRIM8 (ENSPCIG00000028984)	SUFU (ENSPCIG00000028985)	ACTR1A (ENSPCIG00000028989) #7	MFSD13A (ENSPCIG00000028991) #8	CUEDC2 (ENSPCIG00000028992) #9	FBXL15 (ENSPCIG00000028994) #10	PSD (ENSPCIG00000028997) #12	NFKB2 (ENSPCIG00000028999) #14	GBF1 (ENSPCIG00000029004) #15	PITX3 (ENSPCIG00000029009) #16	ELOVL3 (ENSPCIG00000029010) #17	NOLC1 (ENSPCIG00000029012) #18	ENSPCIG00000029013 #19	LDB1 (ENSPCIG00000029016) #20	HPS6 (ENSPCIG00000029018) #21	ARMH3 (ENSPCIG00000029021) #22	KCNIP2 (ENSPCIG00000029025) #23	OGA (ENSPCIG00000009619) #24	FGF8 (ENSPCIG00000009616) #26	FBXW4 (ENSPCIG00000029029) #27	DPCD (ENSPCIG00000029028) #28	POLL (ENSPCIG00000029031) #29	BTRC (ENSPCIG00000029037) #30	LBX1 (ENSPCIG00000012981) #31	TLX1 (ENSPCIG00000031947) #32	KAZALD1 (ENSPCIG00000003284) #33	ENSPCIG00000002751 #34	ENSPCIG00000002730 #35	PDZD7 (ENSPCIG00000002702) #36	LZTS2 (ENSPCIG00000002692)	TWNK (ENSPCIG00000002680)
Wallaby	MODERN SPECIES	2867																ARMH3 (ENSMEUG00000007734) #22
Tasmanian devil	MODERN SPECIES	1	TRIM8 (ENSSHAG00000031236)	SUFU (ENSSHAG00000018777)	ACTR1A (ENSSHAG00000018823) #7	MFSD13A (ENSSHAG00000018826) #8	CUEDC2 (ENSSHAG00000018836) #9	FBXL15 (ENSSHAG00000028197) #10	PSD (ENSSHAG00000018843) #12	NFKB2 (ENSSHAG00000018852) #14	GBF1 (ENSSHAG00000018856) #15	PITX3 (ENSSHAG00000027003) #16	ELOVL3 (ENSSHAG00000018892) #17	NOLC1 (ENSSHAG00000002222) #18	ENSSHAG00000003350 #19	LDB1 (ENSSHAG00000004146) #20	HPS6 (ENSSHAG00000020530) #21	ARMH3 (ENSSHAG00000005390) #22	KCNIP2 (ENSSHAG00000026676) #23	OGA (ENSSHAG00000008257) #24	NPM3 (ENSSHAG00000008567) #25	FGF8 (ENSSHAG00000008652) #26	FBXW4 (ENSSHAG00000009269) #27	DPCD (ENSSHAG00000025520) #28	POLL (ENSSHAG00000010289) #29	BTRC (ENSSHAG00000010653) #30	LBX1 (ENSSHAG00000012692) #31	TLX1 (ENSSHAG00000026892) #32	KAZALD1 (ENSSHAG00000031990) #33	SFXN3 (ENSSHAG00000025221) #34	PDZD7 (ENSSHAG00000013654) #36	LZTS2 (ENSSHAG00000013716)	MRPL43 (ENSSHAG00000027764)
Opossum	MODERN SPECIES		SUFU (ENSMODG00000011242)	ACTR1A (ENSMODG00000011256) #7	MFSD13A (ENSMODG00000011271) #8	ENSMODG00000011276 #9	ENSMODG00000039118	FBXL15 (ENSMODG00000011280) #10	PSD (ENSMODG00000011313) #12	ENSMODG00000049569 #14	GBF1 (ENSMODG00000011370) #15	ENSMODG00000011378 #17	PITX3 (ENSMODG00000045989) #16	NOLC1 (ENSMODG00000011434) #18	ENSMODG00000011467 #19	LDB1 (ENSMODG00000011500) #20	HPS6 (ENSMODG00000049767) #21	ARMH3 (ENSMODG00000011512) #22	ENSMODG00000019596	KCNIP2 (ENSMODG00000011638) #23	OGA (ENSMODG00000011681) #24	NPM3 (ENSMODG00000011689) #25	FGF8 (ENSMODG00000011718) #26	FBXW4 (ENSMODG00000011732) #27	DPCD (ENSMODG00000011742) #28	POLL (ENSMODG00000011757) #29	BTRC (ENSMODG00000011788) #30	ENSMODG00000027979	ENSMODG00000046533	LBX1 (ENSMODG00000044699) #31	TLX1 (ENSMODG00000011900) #32	KAZALD1 (ENSMODG00000011907) #33	SFXN3 (ENSMODG00000011922) #34
Platypus	MODERN SPECIES	7	ARL3 (ENSOANG00000001653)	TRIM8 (ENSOANG00000001654)	SUFU (ENSOANG00000001655)	ACTR1A (ENSOANG00000008105) #7	MFSD13A (ENSOANG00000003445) #8	CUEDC2 (ENSOANG00000001988) #9	FBXL15 (ENSOANG00000001987) #10	PSD (ENSOANG00000044398) #12	NFKB2 (ENSOANG00000006254) #14	GBF1 (ENSOANG00000007818) #15	PITX3 (ENSOANG00000039250) #16	ELOVL3 (ENSOANG00000007823) #17	NOLC1 (ENSOANG00000007824) #18	ENSOANG00000007826 #19	LDB1 (ENSOANG00000007827) #20	ARMH3 (ENSOANG00000007830) #22	KCNIP2 (ENSOANG00000039579) #23	OGA (ENSOANG00000004474) #24	NPM3 (ENSOANG00000039490) #25	FGF8 (ENSOANG00000048473) #26	FBXW4 (ENSOANG00000007313) #27	DPCD (ENSOANG00000045090) #28	POLL (ENSOANG00000007315) #29	BTRC (ENSOANG00000007316) #30	LBX1 (ENSOANG00000044340) #31	TLX1 (ENSOANG00000007318) #32	KAZALD1 (ENSOANG00000047060) #33	SFXN3 (ENSOANG00000007319) #34	PDZD7 (ENSOANG00000007308) #36	LZTS2 (ENSOANG00000046553)	ENSOANG00000042089
Sauria	ANCESTRAL SPECIES	8	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT01100000263518.A.b	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00530000063586.a	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000164095	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT01030000235534	ENSGT00950000183002.C #36
Lepidosauria	ANCESTRAL SPECIES	8	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00530000063586.a	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000164095	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT01030000235534	ENSGT00950000183002.C #36
tuatara	MODERN SPECIES	1056	ANKRD2 (ENSSPUG00000012723)	UBTD1 (ENSSPUG00000012702)	MMS19 (ENSSPUG00000012382)	ZDHHC16 (ENSSPUG00000012276)	EXOSC1 (ENSSPUG00000012263)	ENSSPUG00000012251	RRP12 (ENSSPUG00000012221)	ARHGAP19 (ENSSPUG00000012197)	SLIT1 (ENSSPUG00000012148)	ENSSPUG00000012129	ENSSPUG00000012101	ENSSPUG00000012079 #19	ENSSPUG00000012068 #19	LDB1 (ENSSPUG00000012060) #20	ENSSPUG00000012022	ARMH3 (ENSSPUG00000011969) #22	KCNIP2 (ENSSPUG00000011942) #23	OGA (ENSSPUG00000011899) #24	NPM3 (ENSSPUG00000011875) #25	FGF8 (ENSSPUG00000011861) #26	FBXW4 (ENSSPUG00000011804) #27	DPCD (ENSSPUG00000011780) #28	POLL (ENSSPUG00000011763) #29	ENSSPUG00000011646	BTRC (ENSSPUG00000011559) #30	LBX1 (ENSSPUG00000011521) #31	TLX1 (ENSSPUG00000011511) #32	KAZALD1 (ENSSPUG00000011500) #33	SFXN3 (ENSSPUG00000011489) #34	ENSSPUG00000011481	ENSSPUG00000011397 #36
Episquamata	ANCESTRAL SPECIES	2	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00530000063586.a	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000164095	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT01030000235534	ENSGT00950000183002.C #36
Laterata	ANCESTRAL SPECIES		ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00530000063586.a	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000164095	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT01030000235534	ENSGT00950000183002.C #36
Common wall lizard	MODERN SPECIES	13	ANKRD2 (ENSPMRG00000002965)	UBTD1 (ENSPMRG00000002956)	MMS19 (ENSPMRG00000002937)	ZDHHC16 (ENSPMRG00000002918)	EXOSC1 (ENSPMRG00000002866)	ENSPMRG00000002824	RRP12 (ENSPMRG00000002801)	ARHGAP19 (ENSPMRG00000002746)	SLIT1 (ENSPMRG00000001494)	LCOR (ENSPMRG00000001039)	ENSPMRG00000001008	ENSPMRG00000000986	PPRC1 (ENSPMRG00000000943) #19	LDB1 (ENSPMRG00000000892) #20	HPS6 (ENSPMRG00000000861) #21	ARMH3 (ENSPMRG00000000804) #22	KCNIP2 (ENSPMRG00000000777) #23	OGA (ENSPMRG00000000747) #24	NPM3 (ENSPMRG00000000732) #25	FGF8 (ENSPMRG00000000710) #26	ENSPMRG00000000700	FBXW4 (ENSPMRG00000000682) #27	DPCD (ENSPMRG00000000665) #28	POLL (ENSPMRG00000000637) #29	ENSPMRG00000000604	BTRC (ENSPMRG00000000447) #30	LBX1 (ENSPMRG00000000334) #31	TLX1 (ENSPMRG00000000309) #32	KAZALD1 (ENSPMRG00000000257) #33	SFXN3 (ENSPMRG00000000222) #34	ENSPMRG00000004326
Argentine black and white tegu	MODERN SPECIES	19	ANKRD2 (ENSSMRG00000021685)	UBTD1 (ENSSMRG00000021684)	MMS19 (ENSSMRG00000021683)	ZDHHC16 (ENSSMRG00000021682)	EXOSC1 (ENSSMRG00000021681)	ENSSMRG00000021680	RRP12 (ENSSMRG00000021679)	ARHGAP19 (ENSSMRG00000021678)	SLIT1 (ENSSMRG00000021677)	LCOR (ENSSMRG00000021676)	ENSSMRG00000021675	PPRC1 (ENSSMRG00000021674) #19	LDB1 (ENSSMRG00000021673) #20	ENSSMRG00000021672	HPS6 (ENSSMRG00000021671) #21	ARMH3 (ENSSMRG00000021670) #22	KCNIP2 (ENSSMRG00000021669) #23	OGA (ENSSMRG00000021668) #24	NPM3 (ENSSMRG00000021667) #25	FGF8 (ENSSMRG00000021666) #26	FBXW4 (ENSSMRG00000021665) #27	DPCD (ENSSMRG00000021664) #28	POLL (ENSSMRG00000021663) #29
Toxicofera	ANCESTRAL SPECIES	2	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00530000063586.a	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000164095	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT01030000235534	ENSGT00950000183002.C #36
Lizard	MODERN SPECIES	853									ENSACAG00000043329	ENSACAG00000012444	ENSACAG00000021055	PPRC1 (ENSACAG00000012404) #19	LDB1 (ENSACAG00000012317) #20	ENSACAG00000023496	HPS6 (ENSACAG00000012311) #21	ARMH3 (ENSACAG00000012211) #22	KCNIP2 (ENSACAG00000012032) #23	OGA (ENSACAG00000011944) #24	NPM3 (ENSACAG00000011936) #25	FGF8 (ENSACAG00000011928) #26	FBXW4 (ENSACAG00000011888) #27	DPCD (ENSACAG00000029359) #28	POLL (ENSACAG00000011850) #29	ENSACAG00000011539	BTRC (ENSACAG00000011203) #30	LBX1 (ENSACAG00000022501) #31	TLX1 (ENSACAG00000011182) #32	KAZALD1 (ENSACAG00000011169) #33	SFXN3 (ENSACAG00000029026) #34	ENSACAG00000011135	PDZD7 (ENSACAG00000011099) #36
Elapidae	ANCESTRAL SPECIES	4	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00530000063586.a	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000164095	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT01030000235534	ENSGT00950000183002.C #36
Indian cobra	MODERN SPECIES	3	HOGA1 (ENSNNAG00000003149)	ANKRD2 (ENSNNAG00000003134)	UBTD1 (ENSNNAG00000003131)	MMS19 (ENSNNAG00000003085)	ZDHHC16 (ENSNNAG00000003057)	EXOSC1 (ENSNNAG00000003048)	ENSNNAG00000003029	RRP12 (ENSNNAG00000016135)	ARHGAP19 (ENSNNAG00000016110)	SLIT1 (ENSNNAG00000016033)	LCOR (ENSNNAG00000016005)	PPRC1 (ENSNNAG00000015952) #19	LDB1 (ENSNNAG00000015901) #20	ENSNNAG00000015868	HPS6 (ENSNNAG00000015864) #21	ARMH3 (ENSNNAG00000015743) #22	KCNIP2 (ENSNNAG00000015571) #23	OGA (ENSNNAG00000015525) #24	NPM3 (ENSNNAG00000015516) #25	FGF8 (ENSNNAG00000015504) #26	FBXW4 (ENSNNAG00000015475) #27	DPCD (ENSNNAG00000015439) #28	POLL (ENSNNAG00000015413) #29	ENSNNAG00000015358	BTRC (ENSNNAG00000015268) #30	LBX1 (ENSNNAG00000015245) #31	TLX1 (ENSNNAG00000015238) #32	KAZALD1 (ENSNNAG00000015218) #33	SFXN3 (ENSNNAG00000015203) #34	ENSNNAG00000015152	ENSNNAG00000015138
Elapidae_a	ANCESTRAL SPECIES		ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000164095	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT01030000235534	ENSGT00950000183002.C #36
Blue-lipped sea krait	MODERN SPECIES	6087															HPS6 (ENSLLTG00000013622) #21	ARMH3 (ENSLLTG00000013598) #22
Acanthophiinae	ANCESTRAL SPECIES	1	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000164095	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT01030000235534	ENSGT00950000183002.C #36
Eastern brown snake	MODERN SPECIES	16	MORN4 (ENSPTXG00000018460)	HOGA1 (ENSPTXG00000018458)	ANKRD2 (ENSPTXG00000018448)	UBTD1 (ENSPTXG00000018447)	ZDHHC16 (ENSPTXG00000018446)	EXOSC1 (ENSPTXG00000018445)	ENSPTXG00000018444	RRP12 (ENSPTXG00000018443)	ENSPTXG00000018441	SLIT1 (ENSPTXG00000018436)	LCOR (ENSPTXG00000018435)	ENSPTXG00000018434	PPRC1 (ENSPTXG00000018433) #19	LDB1 (ENSPTXG00000018432) #20	HPS6 (ENSPTXG00000018431) #21	ARMH3 (ENSPTXG00000018430) #22	KCNIP2 (ENSPTXG00000018423) #23	OGA (ENSPTXG00000018422) #24	NPM3 (ENSPTXG00000018421) #25	FGF8 (ENSPTXG00000018420) #26	FBXW4 (ENSPTXG00000018418) #27	DPCD (ENSPTXG00000018417) #28	POLL (ENSPTXG00000018416) #29	ENSPTXG00000018397	BTRC (ENSPTXG00000018395) #30	LBX1 (ENSPTXG00000018393) #31	TLX1 (ENSPTXG00000018391) #32
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES		ANKRD2 (ENSNSUG00000007333)	UBTD1 (ENSNSUG00000007330)	MMS19 (ENSNSUG00000007231)	ZDHHC16 (ENSNSUG00000007225)	EXOSC1 (ENSNSUG00000007224)	ENSNSUG00000007223	RRP12 (ENSNSUG00000007058)	ARHGAP19 (ENSNSUG00000007052)	SLIT1 (ENSNSUG00000007046)	LCOR (ENSNSUG00000007045)	ENSNSUG00000007044	ENSNSUG00000007043	ENSNSUG00000007041 #19	LDB1 (ENSNSUG00000007029) #20	HPS6 (ENSNSUG00000007027) #21	ENSNSUG00000007026 #22	ENSNSUG00000007025	ENSNSUG00000007024 #22	ENSNSUG00000006959	KCNIP2 (ENSNSUG00000006925) #23	OGA (ENSNSUG00000006678) #24	NPM3 (ENSNSUG00000006677) #25	FGF8 (ENSNSUG00000006675) #26	FBXW4 (ENSNSUG00000006672) #27	DPCD (ENSNSUG00000006670) #28	ENSNSUG00000006669 #29	ENSNSUG00000006668 #29	ENSNSUG00000006614	BTRC (ENSNSUG00000006609) #30	LBX1 (ENSNSUG00000006607) #31	TLX1 (ENSNSUG00000006606) #32
Mainland tiger snake	MODERN SPECIES		MMS19 (ENSNSUG00000007231)	ZDHHC16 (ENSNSUG00000007225)	EXOSC1 (ENSNSUG00000007224)	ENSNSUG00000007223	RRP12 (ENSNSUG00000007058)	ARHGAP19 (ENSNSUG00000007052)	SLIT1 (ENSNSUG00000007046)	LCOR (ENSNSUG00000007045)	ENSNSUG00000007044	ENSNSUG00000007043	ENSNSUG00000007041 #19	LDB1 (ENSNSUG00000007029) #20	HPS6 (ENSNSUG00000007027) #21	ENSNSUG00000007026 #22	ENSNSUG00000007025	ENSNSUG00000007024 #22	ENSNSUG00000006959	KCNIP2 (ENSNSUG00000006925) #23	OGA (ENSNSUG00000006678) #24	NPM3 (ENSNSUG00000006677) #25	FGF8 (ENSNSUG00000006675) #26	FBXW4 (ENSNSUG00000006672) #27	DPCD (ENSNSUG00000006670) #28	ENSNSUG00000006669 #29	ENSNSUG00000006668 #29	ENSNSUG00000006614	BTRC (ENSNSUG00000006609) #30	LBX1 (ENSNSUG00000006607) #31	TLX1 (ENSNSUG00000006606) #32	KAZALD1 (ENSNSUG00000006604) #33	SFXN3 (ENSNSUG00000006595) #34
Archelosauria	ANCESTRAL SPECIES	10	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT01100000263518.A.b	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00530000063586.a	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000164095	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT01030000235534	ENSGT00950000183002.C #36
Archosauria	ANCESTRAL SPECIES	7	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00530000063586.a	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000164095	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT01030000235534
Aves	ANCESTRAL SPECIES	6	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00530000063586.a	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000164095	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT01030000235534	ENSGT00950000183002.C #36
Neognathae	ANCESTRAL SPECIES	7	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00530000063586.a	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000164095	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT01030000235534	ENSGT00950000183002.C #36
Neognathae_b	ANCESTRAL SPECIES	8	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00530000063586.a	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000164095	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT01030000235534	ENSGT00950000183002.C #36
Neognathae_c	ANCESTRAL SPECIES	8	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798.d #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000164095	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Golden eagle	MODERN SPECIES	2	HOGA1 (ENSACCG00020000638)	ANKRD2 (ENSACCG00020000618)	UBTD1 (ENSACCG00020000581)	MMS19 (ENSACCG00020000544)	ZDHHC16 (ENSACCG00020000500)	EXOSC1 (ENSACCG00020000443)	ENSACCG00020010002	RRP12 (ENSACCG00020009977)	ARHGAP19 (ENSACCG00020009952)	SLIT1 (ENSACCG00020009931)	LCOR (ENSACCG00020009912)	ENSACCG00020009903	PPRC1 (ENSACCG00020009873) #19	LDB1 (ENSACCG00020009835) #20	HPS6 (ENSACCG00020009815) #21	ARMH3 (ENSACCG00020009789) #22	KCNIP2 (ENSACCG00020009741) #23	OGA (ENSACCG00020009722) #24	NPM3 (ENSACCG00020009702) #25	FGF8 (ENSACCG00020009686) #26	FBXW4 (ENSACCG00020009662) #27	DPCD (ENSACCG00020009630) #28	POLL (ENSACCG00020009601) #29	ENSACCG00020009569	BTRC (ENSACCG00020009499) #30	LBX1 (ENSACCG00020009419) #31	TLX1 (ENSACCG00020009411) #32	KAZALD1 (ENSACCG00020009402) #33	SFXN3 (ENSACCG00020009385) #34	PDZD7 (ENSACCG00020009355) #36	LZTS2 (ENSACCG00020009312)
Kakapo	MODERN SPECIES	22	PI4K2A (ENSSHBG00005020904)	HOGA1 (ENSSHBG00005020914)	ANKRD2 (ENSSHBG00005020924)	UBTD1 (ENSSHBG00005020933)	MMS19 (ENSSHBG00005020943)	ZDHHC16 (ENSSHBG00005020956)	EXOSC1 (ENSSHBG00005020963)	ENSSHBG00005020970	RRP12 (ENSSHBG00005020977)	ARHGAP19 (ENSSHBG00005020983)	SLIT1 (ENSSHBG00005021002)	LCOR (ENSSHBG00005001762)	PPRC1 (ENSSHBG00005001811) #19	LDB1 (ENSSHBG00005001841) #20	HPS6 (ENSSHBG00005001864) #21	ARMH3 (ENSSHBG00005001905) #22	ENSSHBG00005001961 #23	OGA (ENSSHBG00005001995) #24	NPM3 (ENSSHBG00005002019) #25	FGF8 (ENSSHBG00005002055) #26	FBXW4 (ENSSHBG00005002093) #27	DPCD (ENSSHBG00005002126) #28	POLL (ENSSHBG00005002157) #29	ENSSHBG00005002316	BTRC (ENSSHBG00005002701) #30	LBX1 (ENSSHBG00005002802) #31	TLX1 (ENSSHBG00005002828) #32	KAZALD1 (ENSSHBG00005002844) #33	SFXN3 (ENSSHBG00005002866) #34	PDZD7 (ENSSHBG00005002896) #36	LZTS2 (ENSSHBG00005002935)
Passeriformes	ANCESTRAL SPECIES	10	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00530000063586.a	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000164095	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT01030000235534	ENSGT00950000183002.C #36
Great tit	MODERN SPECIES	26	HOGA1 (ENSPMJG00000004076)	ANKRD2 (ENSPMJG00000004080)	UBTD1 (ENSPMJG00000004084)	MMS19 (ENSPMJG00000004087)	ZDHHC16 (ENSPMJG00000004117)	EXOSC1 (ENSPMJG00000004134)	ENSPMJG00000004385	RRP12 (ENSPMJG00000004387)	ARHGAP19 (ENSPMJG00000004396)	SLIT1 (ENSPMJG00000004400)	LCOR (ENSPMJG00000004409)	PPRC1 (ENSPMJG00000004431) #19	LDB1 (ENSPMJG00000004435) #20	ENSPMJG00000004456	HPS6 (ENSPMJG00000004470) #21	ARMH3 (ENSPMJG00000004471) #22	KCNIP2 (ENSPMJG00000004479) #23	ENSPMJG00000004497	OGA (ENSPMJG00000004530) #24	NPM3 (ENSPMJG00000004562) #25	FGF8 (ENSPMJG00000004565) #26	FBXW4 (ENSPMJG00000004570) #27	DPCD (ENSPMJG00000004583) #28	POLL (ENSPMJG00000004590) #29	ENSPMJG00000004603	BTRC (ENSPMJG00000004640) #30	LBX1 (ENSPMJG00000004661) #31	TLX1 (ENSPMJG00000004663) #32	KAZALD1 (ENSPMJG00000004666) #33	SFXN3 (ENSPMJG00000004671) #34	PDZD7 (ENSPMJG00000004677) #36
Passeriformes_d	ANCESTRAL SPECIES	7	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00530000063586.a	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000164095	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT01030000235534	ENSGT00950000183002.C #36
Flycatcher	MODERN SPECIES	25	HOGA1 (ENSFALG00000024169)	ANKRD2 (ENSFALG00000008427)	UBTD1 (ENSFALG00000008438)	MMS19 (ENSFALG00000008442)	ZDHHC16 (ENSFALG00000008446)	EXOSC1 (ENSFALG00000008450)	ENSFALG00000008454	RRP12 (ENSFALG00000008458)	ARHGAP19 (ENSFALG00000008462)	SLIT1 (ENSFALG00000008472)	LCOR (ENSFALG00000025098)	LDB1 (ENSFALG00000008498) #20	PPRC1 (ENSFALG00000008489) #19	ENSFALG00000008528	HPS6 (ENSFALG00000022918) #21	ARMH3 (ENSFALG00000008569) #22	KCNIP2 (ENSFALG00000008575) #23	OGA (ENSFALG00000008580) #24	NPM3 (ENSFALG00000008586) #25	FGF8 (ENSFALG00000024705) #26	FBXW4 (ENSFALG00000008613) #27	DPCD (ENSFALG00000008617) #28	POLL (ENSFALG00000008619) #29	ENSFALG00000008634	BTRC (ENSFALG00000008656) #30	TLX1 (ENSFALG00000008660) #32	KAZALD1 (ENSFALG00000008666) #33	SFXN3 (ENSFALG00000008668) #34	PDZD7 (ENSFALG00000008671) #36	ENSFALG00000028985	LZTS2 (ENSFALG00000008676)
Passeriformes_g	ANCESTRAL SPECIES	8	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00530000063586.a	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000164095	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT01030000235534	ENSGT00950000183002.C #36
Passeroidea	ANCESTRAL SPECIES	7	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00530000063586.a	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000164095	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Common canary	MODERN SPECIES	7	MORN4 (ENSSCAG00000016656)	HOGA1 (ENSSCAG00000016653)	ANKRD2 (ENSSCAG00000016650)	UBTD1 (ENSSCAG00000016648)	ZDHHC16 (ENSSCAG00000016614)	EXOSC1 (ENSSCAG00000016610)	ENSSCAG00000016605	RRP12 (ENSSCAG00000016597)	ARHGAP19 (ENSSCAG00000016588)	SLIT1 (ENSSCAG00000016584)	ENSSCAG00000016580	ENSSCAG00000016579	ENSSCAG00000016575 #19	LDB1 (ENSSCAG00000016573) #20	HPS6 (ENSSCAG00000016571) #21	ARMH3 (ENSSCAG00000016565) #22	KCNIP2 (ENSSCAG00000016561) #23	OGA (ENSSCAG00000016559) #24	NPM3 (ENSSCAG00000016557) #25	FGF8 (ENSSCAG00000016555) #26	FBXW4 (ENSSCAG00000016551) #27	DPCD (ENSSCAG00000016547) #28	POLL (ENSSCAG00000016546) #29	ENSSCAG00000016545	BTRC (ENSSCAG00000016542) #30	TLX1 (ENSSCAG00000016539) #32	KAZALD1 (ENSSCAG00000016538) #33	SFXN3 (ENSSCAG00000016535) #34	ENSSCAG00000016532	ENSSCAG00000016531	PDZD7 (ENSSCAG00000016529) #36
Zebra finch	MODERN SPECIES	28	HOGA1 (ENSTGUG00000009624)	ANKRD2 (ENSTGUG00000022547)	UBTD1 (ENSTGUG00000009637)	MMS19 (ENSTGUG00000009642)	ZDHHC16 (ENSTGUG00000009668)	EXOSC1 (ENSTGUG00000009692)	ENSTGUG00000021202	RRP12 (ENSTGUG00000009711)	ARHGAP19 (ENSTGUG00000009730)	SLIT1 (ENSTGUG00000009734)	LCOR (ENSTGUG00000009834)	PPRC1 (ENSTGUG00000009839) #19	LDB1 (ENSTGUG00000009855) #20	ENSTGUG00000009862	HPS6 (ENSTGUG00000009875) #21	ARMH3 (ENSTGUG00000009880) #22	KCNIP2 (ENSTGUG00000009911) #23	OGA (ENSTGUG00000009938) #24	NPM3 (ENSTGUG00000009948) #25	FGF8 (ENSTGUG00000009956) #26	FBXW4 (ENSTGUG00000009903) #27	DPCD (ENSTGUG00000009967) #28	POLL (ENSTGUG00000009972) #29	ENSTGUG00000009983	BTRC (ENSTGUG00000010007) #30	LBX1 (ENSTGUG00000010027) #31	TLX1 (ENSTGUG00000010029) #32	ENSTGUG00000027136	KAZALD1 (ENSTGUG00000010037) #33	SFXN3 (ENSTGUG00000010039) #34	PDZD7 (ENSTGUG00000010061) #36
Medium ground finch	MODERN SPECIES	3	MORN4 (ENSGFOG00000007960)	HOGA1 (ENSGFOG00000007950)	ANKRD2 (ENSGFOG00000007941)	UBTD1 (ENSGFOG00000007936)	MMS19 (ENSGFOG00000007914)	ZDHHC16 (ENSGFOG00000007902)	EXOSC1 (ENSGFOG00000007885)	ENSGFOG00000007868	RRP12 (ENSGFOG00000007841)	ARHGAP19 (ENSGFOG00000007827)	SLIT1 (ENSGFOG00000004119)	LCOR (ENSGFOG00000004029)	ENSGFOG00000004024	ENSGFOG00000004011 #19	LDB1 (ENSGFOG00000003999) #20	ARMH3 (ENSGFOG00000003948) #22	KCNIP2 (ENSGFOG00000003914) #23	OGA (ENSGFOG00000003883) #24	NPM3 (ENSGFOG00000003871) #25	FGF8 (ENSGFOG00000003860) #26	FBXW4 (ENSGFOG00000003718) #27	DPCD (ENSGFOG00000003687) #28	POLL (ENSGFOG00000003670) #29	ENSGFOG00000003629	ENSGFOG00000003604	ENSGFOG00000003597	BTRC (ENSGFOG00000003584) #30	KAZALD1 (ENSGFOG00000003573) #33	SFXN3 (ENSGFOG00000003555) #34	ENSGFOG00000003538	ENSGFOG00000003506 #36
Galloanserae	ANCESTRAL SPECIES	6	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00530000063586.a	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000164095	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT01030000235534
Phasianidae	ANCESTRAL SPECIES	6	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00530000063586.a	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000164095	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698.n #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT01030000235534
Japanese quail	MODERN SPECIES	24	MORN4 (ENSCJPG00005019551)	HOGA1 (ENSCJPG00005019552)	ANKRD2 (ENSCJPG00005019553)	UBTD1 (ENSCJPG00005019554)	ZDHHC16 (ENSCJPG00005019580)	EXOSC1 (ENSCJPG00005019603)	ENSCJPG00005019616	ARHGAP19 (ENSCJPG00005019619)	SLIT1 (ENSCJPG00005019620)	LCOR (ENSCJPG00005019736)	ENSCJPG00005019737	ENSCJPG00005019738	ENSCJPG00005019739 #19	LDB1 (ENSCJPG00005019740) #20	HPS6 (ENSCJPG00005019741) #21	ARMH3 (ENSCJPG00005019742) #22	KCNIP2 (ENSCJPG00005019751) #23	OGA (ENSCJPG00005019752) #24	NPM3 (ENSCJPG00005019854) #25	FGF8 (ENSCJPG00005019855) #26	FBXW4 (ENSCJPG00005019856) #27	DPCD (ENSCJPG00005019857) #28	ENSCJPG00005019858 #29	ENSCJPG00005019859 #29	ENSCJPG00005019860	BTRC (ENSCJPG00005019877) #30	ENSCJPG00005019967	LBX1 (ENSCJPG00005019968) #31	TLX1 (ENSCJPG00005019970) #32	KAZALD1 (ENSCJPG00005019972) #33	SFXN3 (ENSCJPG00005019973) #34
Phasianidae_b	ANCESTRAL SPECIES	6	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00530000063586.a	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000164095	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698.n #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT01030000235534
Chicken	MODERN SPECIES	35	HOGA1 (ENSGALG00010020633)	ANKRD2 (ENSGALG00010020642)	UBTD1 (ENSGALG00010020667)	MMS19 (ENSGALG00010020673)	ZDHHC16 (ENSGALG00010020682)	EXOSC1 (ENSGALG00010020705)	PGAM1 (ENSGALG00010020714)	RRP12 (ENSGALG00010020730)	ARHGAP19 (ENSGALG00010020759)	SLIT1 (ENSGALG00010020778)	LCOR (ENSGALG00010020866)	PPRC1 (ENSGALG00010020889) #19	LDB1 (ENSGALG00010020921) #20	ENSGALG00010020941	HPS6 (ENSGALG00010020949) #21	C6H10orf76 (ENSGALG00010020970) #22	KCNIP2 (ENSGALG00010021012) #23	MGEA5 (ENSGALG00010021023) #24	NPM3 (ENSGALG00010021034) #25	FGF8 (ENSGALG00010021040) #26	FBXW4 (ENSGALG00010023185) #27	DPCD (ENSGALG00010019139) #28	POLL (ENSGALG00010019104) #29	ENSGALG00010017997	BTRC (ENSGALG00010018103) #30	LBX1 (ENSGALG00010019045) #31	TLX1 (ENSGALG00010018467) #32	KAZALD1 (ENSGALG00010017786) #33	SFXN3 (ENSGALG00010017949) #34	PDZD7 (ENSGALG00010017959) #36	ENSGALG00010017964
Turkey	MODERN SPECIES	28	HOGA1 (ENSMGAG00000009750)	ANKRD2 (ENSMGAG00000009758)	UBTD1 (ENSMGAG00000020222)	MMS19 (ENSMGAG00000009774)	ZDHHC16 (ENSMGAG00000009803)	EXOSC1 (ENSMGAG00000018256)	ENSMGAG00000009817	RRP12 (ENSMGAG00000009829)	ARHGAP19 (ENSMGAG00000009856)	SLIT1 (ENSMGAG00000009859)	LCOR (ENSMGAG00000009950)	PPRC1 (ENSMGAG00000010023) #19	LDB1 (ENSMGAG00000009961) #20	ENSMGAG00000002659	HPS6 (ENSMGAG00000002655) #21	ARMH3 (ENSMGAG00000009992) #22	KCNIP2 (ENSMGAG00000010045) #23	OGA (ENSMGAG00000010077) #24	NPM3 (ENSMGAG00000019749) #25	FGF8 (ENSMGAG00000015335) #26	FBXW4 (ENSMGAG00000010100) #27	DPCD (ENSMGAG00000010112) #28	POLL (ENSMGAG00000010132) #29	ENSMGAG00000010147	BTRC (ENSMGAG00000010164) #30	ENSMGAG00000018253 #32	KAZALD1 (ENSMGAG00000010203) #33	SFXN3 (ENSMGAG00000022982) #34	PDZD7 (ENSMGAG00000010230) #36	ENSMGAG00000021897	ENSMGAG00000018739 ##36
Anatidae	ANCESTRAL SPECIES	4	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00530000063586.a	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000164095	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Pink-footed goose	MODERN SPECIES	11	HOGA1 (ENSABRG00000008109)	ANKRD2 (ENSABRG00000008091)	UBTD1 (ENSABRG00000008082)	MMS19 (ENSABRG00000008035)	ZDHHC16 (ENSABRG00000008020)	EXOSC1 (ENSABRG00000008001)	ENSABRG00000007994	RRP12 (ENSABRG00000007978)	ARHGAP19 (ENSABRG00000007950)	ENSABRG00000007944	SLIT1 (ENSABRG00000007893)	LCOR (ENSABRG00000007875)	PPRC1 (ENSABRG00000007859) #19	LDB1 (ENSABRG00000007841) #20	ENSABRG00000007812	ARMH3 (ENSABRG00000007775) #22	KCNIP2 (ENSABRG00000007767) #23	OGA (ENSABRG00000007745) #24	NPM3 (ENSABRG00000007714) #25	FGF8 (ENSABRG00000007708) #26	FBXW4 (ENSABRG00000007699) #27	DPCD (ENSABRG00000007691) #28	POLL (ENSABRG00000007682) #29	ENSABRG00000007659	BTRC (ENSABRG00000007647) #30	TLX1 (ENSABRG00000007623) #32	ENSABRG00000007618	KAZALD1 (ENSABRG00000007609) #33	SFXN3 (ENSABRG00000007596) #34	PDZD7 (ENSABRG00000007581) #36	LZTS2 (ENSABRG00000007569)
Duck	MODERN SPECIES	24	ENSAPLG00000019744	CRTAC1 (ENSAPLG00000011099)	GOLGA7B (ENSAPLG00000018711)	SFRP5 (ENSAPLG00000021384)	ZFYVE27 (ENSAPLG00000028815)	ENSAPLG00000015404	ZDHHC16 (ENSAPLG00000012896)	SLIT1 (ENSAPLG00000013620)	ARHGAP19 (ENSAPLG00000014166)	RRP12 (ENSAPLG00000014387)	LCOR (ENSAPLG00000013561)	ENSAPLG00000019156	ENSAPLG00000028566	ENSAPLG00000012284	HPS6 (ENSAPLG00000012202) #21	ARMH3 (ENSAPLG00000011883) #22	OGA (ENSAPLG00000011067) #24	NPM3 (ENSAPLG00000010935) #25	FGF8 (ENSAPLG00000025762) #26	POLL (ENSAPLG00000010211) #29	DPCD (ENSAPLG00000010260) #28	ENSAPLG00000008660	BTRC (ENSAPLG00000008388) #30	LBX1 (ENSAPLG00000026975) #31	SLF2 (ENSAPLG00000004041)	MFSD13A (ENSAPLG00000003639) #8	SUFU (ENSAPLG00000002654)	TRIM8 (ENSAPLG00000002530)	ARL3 (ENSAPLG00000016017)	SFXN2 (ENSAPLG00000030360) ##34	WBP1L (ENSAPLG00000012879)
African ostrich	MODERN SPECIES	290	ENSSCUG00000001705	ZFYVE27 (ENSSCUG00000001709)	MARVELD1 (ENSSCUG00000001711)	PI4K2A (ENSSCUG00000001713)	ENSSCUG00000001716	MMS19 (ENSSCUG00000001785)	ZDHHC16 (ENSSCUG00000001868)	EXOSC1 (ENSSCUG00000001873)	ENSSCUG00000001876	RRP12 (ENSSCUG00000001878)	ARHGAP19 (ENSSCUG00000001882)	LCOR (ENSSCUG00000001884)	ENSSCUG00000001887	LDB1 (ENSSCUG00000001889) #20	HPS6 (ENSSCUG00000001892) #21	ARMH3 (ENSSCUG00000001895) #22	KCNIP2 (ENSSCUG00000001896) #23	OGA (ENSSCUG00000001899) #24	NPM3 (ENSSCUG00000001900) #25	FGF8 (ENSSCUG00000001901) #26	FBXW4 (ENSSCUG00000001902) #27	DPCD (ENSSCUG00000001903) #28	POLL (ENSSCUG00000001904) #29	ENSSCUG00000001906	BTRC (ENSSCUG00000001914) #30	ENSSCUG00000001920	KAZALD1 (ENSSCUG00000001922) #33	SFXN3 (ENSSCUG00000001926) #34	ENSSCUG00000001933 #36	ENSSCUG00000001937	ENSSCUG00000001940 #36
Australian saltwater crocodile	MODERN SPECIES	68	MARVELD1 (ENSCPRG00005013655)	PI4K2A (ENSCPRG00005013650)	MORN4 (ENSCPRG00005013645)	HOGA1 (ENSCPRG00005013640)	ANKRD2 (ENSCPRG00005013635)	EXOSC1 (ENSCPRG00005013566)	ZDHHC16 (ENSCPRG00005013550)	ENSCPRG00005013535	ENSCPRG00005013313	ARHGAP19 (ENSCPRG00005013266)	SLIT1 (ENSCPRG00005013244)	LCOR (ENSCPRG00005013234)	PPRC1 (ENSCPRG00005013227) #19	LDB1 (ENSCPRG00005013215) #20	HPS6 (ENSCPRG00005013211) #21	ARMH3 (ENSCPRG00005013194) #22	KCNIP2 (ENSCPRG00005013176) #23	OGA (ENSCPRG00005013170) #24	NPM3 (ENSCPRG00005013161) #25	FGF8 (ENSCPRG00005013159) #26	ENSCPRG00005013157 #27	ENSCPRG00005013155 #27	DPCD (ENSCPRG00005013153) #28	POLL (ENSCPRG00005013150) #29	ENSCPRG00005013130	BTRC (ENSCPRG00005013112) #30	ENSCPRG00005013103	LBX1 (ENSCPRG00005013102) #31	TLX1 (ENSCPRG00005013094) #32	KAZALD1 (ENSCPRG00005013088) #33	SFXN3 (ENSCPRG00005013022) #34
Cryptodira	ANCESTRAL SPECIES	6	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT01100000263518.A.b	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000164095	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00990000203892 #35
Testudinoidea	ANCESTRAL SPECIES	2	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT01100000263518.A.b	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00530000063586.a	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000164095	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00990000203892 #35
Emydidae	ANCESTRAL SPECIES	6	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT01100000263518.A.b	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.b	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00530000063586.a	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000164095	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Three-toed box turtle	MODERN SPECIES	39	PYROXD2 (ENSTMTG00000000830)	ENSTMTG00000000900	ZFYVE27 (ENSTMTG00000000937)	MARVELD1 (ENSTMTG00000001012)	AVPI1 (ENSTMTG00000001017)	PI4K2A (ENSTMTG00000001025)	ENSTMTG00000001035	MMS19 (ENSTMTG00000001309)	ZDHHC16 (ENSTMTG00000002566)	ARHGAP19 (ENSTMTG00000002583)	ENSTMTG00000002590	LCOR (ENSTMTG00000002602)	PPRC1 (ENSTMTG00000002608) #19	LDB1 (ENSTMTG00000002621) #20	HPS6 (ENSTMTG00000002625) #21	ARMH3 (ENSTMTG00000002641) #22	OGA (ENSTMTG00000002679) #24	NPM3 (ENSTMTG00000002688) #25	FGF8 (ENSTMTG00000002693) #26	FBXW4 (ENSTMTG00000002700) #27	DPCD (ENSTMTG00000002704) #28	POLL (ENSTMTG00000002707) #29	ENSTMTG00000002734	BTRC (ENSTMTG00000002831) #30	LBX1 (ENSTMTG00000002859) #31	TLX1 (ENSTMTG00000002865) #32	KAZALD1 (ENSTMTG00000002879) #33	SFXN3 (ENSTMTG00000002927) #34	PDZD7 (ENSTMTG00000002937) #36	ENSTMTG00000002944 ##36	LZTS2 (ENSTMTG00000002949)
painted turtle	MODERN SPECIES	2388	MMS19 (ENSCPBG00000011957)	ZDHHC16 (ENSCPBG00000011953)	EXOSC1 (ENSCPBG00000011949)	ENSCPBG00000011948	ENSCPBG00000011944	RRP12 (ENSCPBG00000011935)	ENSCPBG00000011932	ARHGAP19 (ENSCPBG00000011924)	SLIT1 (ENSCPBG00000005963)	LCOR (ENSCPBG00000005416)	ENSCPBG00000005413	PPRC1 (ENSCPBG00000005408) #19	LDB1 (ENSCPBG00000005401) #20	ENSCPBG00000005394	HPS6 (ENSCPBG00000005375) #21	ARMH3 (ENSCPBG00000003975) #22	KCNIP2 (ENSCPBG00000003838) #23	OGA (ENSCPBG00000003826) #24	NPM3 (ENSCPBG00000003817) #25	FGF8 (ENSCPBG00000003804) #26	FBXW4 (ENSCPBG00000003783) #27	DPCD (ENSCPBG00000003764) #28	POLL (ENSCPBG00000003750) #29	ENSCPBG00000003715	BTRC (ENSCPBG00000003583) #30	LBX1 (ENSCPBG00000003542) #31	TLX1 (ENSCPBG00000003532) #32	KAZALD1 (ENSCPBG00000003520) #33	SFXN3 (ENSCPBG00000003501) #34	ENSCPBG00000003492	ENSCPBG00000003469 #36
Testudinidae	ANCESTRAL SPECIES	9	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000164095	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00990000203892 #35
Goode s thornscrub tortoise	MODERN SPECIES	21	ENSGEVG00005003466	ZDHHC16 (ENSGEVG00005003602)	ENSGEVG00005003635	ENSGEVG00005003669	ENSGEVG00005003730	ENSGEVG00005003749	UBTD1 (ENSGEVG00005003758)	ENSGEVG00005003767	ARHGAP19 (ENSGEVG00005003823)	SLIT1 (ENSGEVG00005003855)	LCOR (ENSGEVG00005003931)	ENSGEVG00005003952	ENSGEVG00005003965 #19	LDB1 (ENSGEVG00005003974) #20	HPS6 (ENSGEVG00005003987) #21	ARMH3 (ENSGEVG00005003998) #22	KCNIP2 (ENSGEVG00005004222) #23	OGA (ENSGEVG00005004411) #24	NPM3 (ENSGEVG00005004443) #25	FGF8 (ENSGEVG00005004467) #26	FBXW4 (ENSGEVG00005004522) #27	DPCD (ENSGEVG00005004549) #28	POLL (ENSGEVG00005004570) #29	ENSGEVG00005004603	BTRC (ENSGEVG00005004649) #30	ENSGEVG00005004693	LBX1 (ENSGEVG00005004717) #31	TLX1 (ENSGEVG00005004739) #32	ENSGEVG00005004760	KAZALD1 (ENSGEVG00005004786) #33	SFXN3 (ENSGEVG00005004813) #34
Abingdon island giant tortoise	MODERN SPECIES	587															HPS6 (ENSCABG00000001997) #21	ARMH3 (ENSCABG00000002002) #22
Chinese turtle	DUPLICATION
Chinese turtle	MODERN SPECIES	464															ENSPSIG00000009522 #22	ENSPSIG00000007520 #22
Chinese turtle	MODERN SPECIES	464																ENSPSIG00000009522 #22	ENSPSIG00000007520 #22
Anura	ANCESTRAL SPECIES	25	ENSGT00390000015583	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00940000161460	ENSGT00390000013106	ENSGT01100000263518.A.b	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00530000063586.a	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798 #23	ENSGT00390000007726.a.a #24	ENSGT00940000158796 #25	ENSGT00940000159518 #26	ENSGT00390000005029 #27	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00940000164095	ENSGT00940000159672 #30	ENSGT00940000161756 #31	ENSGT00940000158698 #32	ENSGT00530000063555.B #33	ENSGT01030000234641.b.a.b.a.a #34	ENSGT00950000183002.C #36	ENSGT00940000154078.a.a
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	9	ENSLLEG00000010118	ENSLLEG00000010017	ENSLLEG00000009979	ENSLLEG00000009929	ARHGAP19 (ENSLLEG00000009651)	SLIT1 (ENSLLEG00000009277)	ENSLLEG00000009221	ENSLLEG00000009195	ENSLLEG00000009112	PPRC1 (ENSLLEG00000008978) #19	ENSLLEG00000008950	ENSLLEG00000008924	LDB1 (ENSLLEG00000008345) #20	ENSLLEG00000007323	HPS6 (ENSLLEG00000007212) #21	ENSLLEG00000006720 #22	ENSLLEG00000006641	ENSLLEG00000006620	KCNIP2 (ENSLLEG00000006545) #23	OGA (ENSLLEG00000005763) #24	NPM3 (ENSLLEG00000030101) #25	ENSLLEG00000030089	FGF8 (ENSLLEG00000030080) #26	ENSLLEG00000030073	FBXW4 (ENSLLEG00000030048) #27	DPCD (ENSLLEG00000030025) #28	POLL (ENSLLEG00000030007) #29	ENSLLEG00000029961	BTRC (ENSLLEG00000029876) #30	ENSLLEG00000029846	LBX1 (ENSLLEG00000029839) #31
Leishan spiny toad	MODERN SPECIES	9	ENSLLEG00000020279	ENSLLEG00000020325	ENSLLEG00000020360	ENSLLEG00000020424	ENSLLEG00000020446	ENSLLEG00000020499	ENSLLEG00000020581	ENSLLEG00000020596	ENSLLEG00000005609	ENSLLEG00000005691	ENSLLEG00000005705	ENSLLEG00000005725	ENSLLEG00000005749	ENSLLEG00000005777	ENSLLEG00000005818	ENSLLEG00000005931 #22	ENSLLEG00000006180	ENSLLEG00000006196	ENSLLEG00000006229	ENSLLEG00000006267	ENSLLEG00000006314	ENSLLEG00000006358	ENSLLEG00000006377	ENSLLEG00000006403	ENSLLEG00000006424	ENSLLEG00000006464	ENSLLEG00000006487	ENSLLEG00000006553	ENSLLEG00000006573	ENSLLEG00000006630	ENSLLEG00000006644
Frog	MODERN SPECIES	7	zdhhc16 (ENSXETG00000003436)	exosc1 (ENSXETG00000003434)	pgam1 (ENSXETG00000003433)	ENSXETG00000043993	ENSXETG00000043423	XB5832479 [provisional:cdc25c] (ENSXETG00000035778)	rrp12 (ENSXETG00000003430)	nlk.2 (ENSXETG00000003418)	arhgap19 (ENSXETG00000003417)	slit1 (ENSXETG00000003405)	lcor (ENSXETG00000046643)	pprc1 (ENSXETG00000037399) #19	ldb1 (ENSXETG00000001714) #20	ENSXETG00000006272	hps6 (ENSXETG00000006271) #21	armh3 (ENSXETG00000006269) #22	ENSXETG00000048284	ENSXETG00000046014	kcnip2 (ENSXETG00000014462) #23	oga (ENSXETG00000014468) #24	ENSXETG00000048408	npm3 (ENSXETG00000014472) #25	ENSXETG00000042829	ENSXETG00000040225	fgf8 (ENSXETG00000014474) #26	ENSXETG00000044919	fbxw4 (ENSXETG00000021190) #27	dpcd (ENSXETG00000010773) #28	poll (ENSXETG00000032755) #29	slc2a9 (ENSXETG00000021195)	ENSXETG00000047528
Coelacanth	MODERN SPECIES	3027														ENSLACG00000003164	HPS6 (ENSLACG00000002331) #21	ARMH3 (ENSLACG00000000242) #22
Actinopterygii	ANCESTRAL SPECIES	47	ENSGT00390000015375	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000160317 #8	ENSGT00940000155782 #7	ENSGT00390000009747	ENSGT00940000157919	ENSGT00940000155737.b	ENSGT01030000234641.b.a.a ##34	ENSGT00940000158796 #25	ENSGT00390000007726.a.a #24	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00530000063586.a	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00940000175336	ENSGT00730000111173	ENSGT00530000063604.A	ENSGT00940000153956.b	ENSGT00940000165889
Neopterygii	ANCESTRAL SPECIES	18	ENSGT00390000015375	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000160317 #8	ENSGT00940000155782 #7	ENSGT00390000009747	ENSGT00940000157919	ENSGT00940000155737.b	ENSGT01030000234641.b.a.a ##34	ENSGT00940000158796 #25	ENSGT00390000007726.a.a #24	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00530000063586.a	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331	ENSGT00940000157322.b.a	ENSGT00940000170319	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00940000175336	ENSGT00730000111173	ENSGT00530000063604.A	ENSGT00940000153956.b
Osteoglossocephalai	ANCESTRAL SPECIES	108	ENSGT00390000015375	ENSGT00940000157186.c	ENSGT00940000160317 #8	ENSGT00530000064017.a	ENSGT00390000009747	ENSGT00940000157919.a.b	ENSGT00940000157919.b	ENSGT00940000155737.b	ENSGT01030000234641.b.a.a ##34	ENSGT00940000158796 #25	ENSGT00390000007726.a.a #24	ENSGT00950000183137.a #19	ENSGT00390000005639.a.b #20	ENSGT00530000063586.a	ENSGT00390000001546 #21	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000170319	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00940000175336	ENSGT00730000111173	ENSGT00530000063604.A	ENSGT00940000157525.a
Clupeocephala	ANCESTRAL SPECIES	97	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000170319	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00940000175336	ENSGT00730000111173.h	ENSGT00530000063604.A	ENSGT00940000157525.a	ENSGT00950000183082.b.b.a.b
Otomorpha	ANCESTRAL SPECIES	55	ENSGT00940000168750	ENSGT00940000160070.b.a.b	ENSGT00950000183044.a.a.a.a.a	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00940000162611.b	ENSGT00940000162611.a.b	ENSGT00730000111173.g	ENSGT00940000153956.b	ENSGT00940000165889	ENSGT00390000015298
Clupeiformes	ANCESTRAL SPECIES	8									ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00940000162611.b	ENSGT00940000162611.a.b	ENSGT00730000111173.g	ENSGT00530000067963	ENSGT00940000163053.c.a	ENSGT00390000009613.a
Denticle herring	MODERN SPECIES	13	TMC6 (ENSDCDG00000000838)	NOTUM (ENSDCDG00000000857)	aspscr1 (ENSDCDG00000000885)	ENSDCDG00000000895	pycr1b (ENSDCDG00000000900)	mafgb (ENSDCDG00000000914)	ENSDCDG00000000924	SIRT7 (ENSDCDG00000000939)	syngr2b (ENSDCDG00000000953)	tk1 (ENSDCDG00000000962)	afmid (ENSDCDG00000000971)	cant1b (ENSDCDG00000000981)	ENSDCDG00000001004 ##24	si:dkey-93h22.8 (ENSDCDG00000001043) #19	ldb1b (ENSDCDG00000001084) #20	armh3 (ENSDCDG00000001301) #22	KCNIP2 (ENSDCDG00000001316) #23	ARHGAP19 (ENSDCDG00000001323)	slit1b (ENSDCDG00000001399)	ENSDCDG00000002106	ENSDCDG00000002115	MORN4 (ENSDCDG00000002121)	hoga1 (ENSDCDG00000002126)	ENSDCDG00000002133	ENSDCDG00000002139	GOT1 (ENSDCDG00000002146)	ENSDCDG00000002154	ENTPD7 (ENSDCDG00000002163)	ENSDCDG00000002170	atpv0e2 (ENSDCDG00000002173)	ENSDCDG00000002188
Atlantic herring	MODERN SPECIES	1	ENSCHAG00000005877	hoga1 (ENSCHAG00000005890)	ENSCHAG00000005916	ENSCHAG00000005930	SIRT7 (ENSCHAG00000005946)	hdgfl2 (ENSCHAG00000005979)	ap3d1 (ENSCHAG00000006044)	ENSCHAG00000007369	MAFG (ENSCHAG00000007402)	aspscr1 (ENSCHAG00000007457)	ENSCHAG00000007483	TMC6 (ENSCHAG00000007610)	ENSCHAG00000007720	afmid (ENSCHAG00000007751)	ENSCHAG00000007887 ##24	armh3 (ENSCHAG00000008021) #22	ENSCHAG00000008497	naprt (ENSCHAG00000008551)	gna15.1 (ENSCHAG00000008604)	ARHGAP39 (ENSCHAG00000008631)	acbd6 (ENSCHAG00000008954)	lhx4 (ENSCHAG00000009096)	zbtb37 (ENSCHAG00000009125)	ENSCHAG00000009145	lhx4 (ENSCHAG00000009165)	ENSCHAG00000009194	chaf1a (ENSCHAG00000009206)	ubxn6 (ENSCHAG00000009314)	ENSCHAG00000009454	serpinc1 (ENSCHAG00000009469)	stil (ENSCHAG00000009485)
Otophysi	ANCESTRAL SPECIES	327																ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000154965.A	ENSGT00940000162611.b	ENSGT00570000079239	ENSGT00390000013448.a.a	ENSGT00390000002970
Characiphysae	ANCESTRAL SPECIES																	ENSGT00390000002554 #22
Characiphysae_b	ANCESTRAL SPECIES																	ENSGT00390000002554 #22
Characoidei	ANCESTRAL SPECIES																	ENSGT00390000002554 #22
Red-bellied piranha	MODERN SPECIES	650												katnb1 (ENSPNAG00000007872)	ZNF710 (ENSPNAG00000000514)	tmem208 (ENSPNAG00000007841)	ENSPNAG00000029688	armh3 (ENSPNAG00000005707) #22
Mexicana tetra	MODERN SPECIES	20	ADAMTS7 (ENSAMXG00000007208)	ENSAMXG00000025762	ENSAMXG00000033683	drd4b (ENSAMXG00000029361)	sirt3 (ENSAMXG00000007187)	PSMD13 (ENSAMXG00000029773)	ENSAMXG00000007146	ZNF319 (ENSAMXG00000025761)	csnk2a2a (ENSAMXG00000007124)	isl2b (ENSAMXG00000015032)	nmbb (ENSAMXG00000036171)	tmed3 (ENSAMXG00000030400)	ZNF710 (ENSAMXG00000036333)	RCN1 (ENSAMXG00000036657)	tmem208 (ENSAMXG00000009728)	armh3 (ENSAMXG00000009749) #22	PIK3CA (ENSAMXG00000009771)	ZMAT3 (ENSAMXG00000009798)	ENSAMXG00000031600	ENSAMXG00000030485	tbl1xr1a (ENSAMXG00000019119)	ENSAMXG00000038909	srsf7b (ENSAMXG00000007005)	GEMIN6 (ENSAMXG00000006993)	sos1 (ENSAMXG00000006975)	rfc4 (ENSAMXG00000006955)	plaat1 (ENSAMXG00000029020)	ankrd13c (ENSAMXG00000035740)	srsf11 (ENSAMXG00000006919)	SIRT7 (ENSAMXG00000006892)	rbbp9 (ENSAMXG00000030493)
Electric eel	MODERN SPECIES	23	wwtr1 (ENSEEEG00000023916)	commd2 (ENSEEEG00000023917)	ENSEEEG00000023921	kcnh1b (ENSEEEG00000023922)	rcor3 (ENSEEEG00000023926)	ENSEEEG00000023930	ENSEEEG00000023945	ENSEEEG00000023986	ptk7a (ENSEEEG00000023998)	ENSEEEG00000024038	ENSEEEG00000024043	ENSEEEG00000024045	rrp36 (ENSEEEG00000024047)	sipa1l2 (ENSEEEG00000024051)	egln1b (ENSEEEG00000024055)	armh3 (ENSEEEG00000024064) #22	RANBP3 (ENSEEEG00000024107)	NRTN (ENSEEEG00000024108)	ndufa11 (ENSEEEG00000024109)	VMAC (ENSEEEG00000024110)	larp6b (ENSEEEG00000024111)	gadd45ba (ENSEEEG00000024113)	diras1a (ENSEEEG00000024114)	APC2 (ENSEEEG00000024115)	ENSEEEG00000024116	reep6 (ENSEEEG00000024119)	zgc:113223 (ENSEEEG00000024125)	ENSEEEG00000024130	thop1 (ENSEEEG00000024153)	sgta (ENSEEEG00000024200)	SLC39A3 (ENSEEEG00000024203)
Channel catfish	MODERN SPECIES	20	ENSIPUG00000021409	SPTBN2 (ENSIPUG00000021254)	LTBP3 (ENSIPUG00000019868)	ENSIPUG00000019851	ENSIPUG00000019839	ENSIPUG00000019837	ENSIPUG00000019833	ENSIPUG00000019825	ENSIPUG00000019822	ENSIPUG00000019813	ENSIPUG00000019807	ENSIPUG00000019798	klhl13 (ENSIPUG00000019746)	wdr44 (ENSIPUG00000019708)	zgc:163098 (ENSIPUG00000019652)	armh3 (ENSIPUG00000019645) #22	ENSIPUG00000019632	PLD2 (ENSIPUG00000019596)	si:dkey-111e8.4 (ENSIPUG00000019584)	ENSIPUG00000019579	ENSIPUG00000019577	ENSIPUG00000019567	TMPRSS13 (ENSIPUG00000019527)	tmprss4b (ENSIPUG00000019512)	Scn4b (ENSIPUG00000019498)	mpzl2b (ENSIPUG00000019481)	Pafah1b2 (ENSIPUG00000019468)	apoa1a (ENSIPUG00000019447)	rnf214 (ENSIPUG00000019426)	tagln2 (ENSIPUG00000019407)	TPPP3 (ENSIPUG00000019389)
Cyprinoidei	ANCESTRAL SPECIES	17	ENSGT00390000011314	ENSGT01100000263484.A.c.a.a.b	ENSGT00940000160019	ENSGT00940000164175.a	ENSGT00940000164924.b.k.a	ENSGT00940000164924.b.k.b	ENSGT00940000164221.b	ENSGT00940000165727	ENSGT00940000159144.C.fb.a	ENSGT00940000159144.C.fb.b	ENSGT00940000160465.l	ENSGT00940000153664.B.r	ENSGT00940000154942.f	ENSGT00400000022158.b	ENSGT00940000157837.d	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000157331.b.a	ENSGT00940000157322.b.b	ENSGT00940000162611.a.a.a	ENSGT00530000063604.A	ENSGT00940000162476	ENSGT00390000005351	ENSGT00940000155781	ENSGT00950000183146.b.b	ENSGT01030000234648.a.a.c.a	ENSGT00390000001505	ENSGT00390000008429.e.a	ENSGT00940000159711	ENSGT00940000160561	ENSGT00390000007160.a.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	272	ENSGT00390000018026.a	ENSGT00940000158024.C.e.b	ENSGT01100000263484.A.c.a.a.b.b	ENSGT00940000160019	ENSGT00940000164175.a.o	ENSGT00940000164924.b.k.b.a	ENSGT00940000164221.b.i	ENSGT00940000165727.d	ENSGT00940000159144.C.fb.a	ENSGT00940000159144.C.fb.b	ENSGT00940000160465.l	ENSGT00940000153664.B.r.c.a	ENSGT00940000154942.f.f.a	ENSGT00400000022158.b.h	ENSGT00940000157837.d.c	ENSGT00390000002554.k #22	ENSGT00940000157798.b.b #23
Cyprininae_a	ANCESTRAL SPECIES	430							ENSGT00940000164924.b.k.b.a	ENSGT00940000164221.b.i	ENSGT00940000165727.d	ENSGT00940000159144.C.fb.a	ENSGT00940000160465.l	ENSGT00940000153664.B.r.c.a.a	ENSGT00940000154942.f.f.b	ENSGT00400000022158.b.g	ENSGT00940000157837.d.c	ENSGT00390000002554.k #22	ENSGT00940000157798.b.b #23	ENSGT00940000157331.b.a.j	ENSGT00940000157322.b.b.b	ENSGT00940000162611.a.a.a.h	ENSGT00940000162611.b.b	ENSGT00530000063604.A.a	ENSGT00940000162476.f	ENSGT00390000005351.p.b	ENSGT00940000155781.q.a	ENSGT00950000183146.b.b.a	ENSGT01030000234648.a.a.c.a.f
Common carp reference	MODERN SPECIES	43	ENSCCRG00000072314	ENSCCRG00000067306	ENSCCRG00000010037	NMUR1 (ENSCCRG00000055616)	ENSCCRG00000064305	dynlt2b (ENSCCRG00000061953)	ENSCCRG00000070571	ENSCCRG00000052959	ENSCCRG00000039283	tsc22d2 (ENSCCRG00000039275)	pfn2b (ENSCCRG00000039268)	rnf13 (ENSCCRG00000035726)	srfa (ENSCCRG00000078070)	ENSCCRG00000057450	ENSCCRG00000013905	armh3 (ENSCCRG00000020015) #22	ENSCCRG00000019997 #23	slit1b (ENSCCRG00000044549)	ENSCCRG00000073211	ENSCCRG00000075405	hoga1 (ENSCCRG00000071117)	ENSCCRG00000001561	terf2ip (ENSCCRG00000050331)	ENSCCRG00000009347	ENSCCRG00000060380	ENSCCRG00000021216	ENSCCRG00000048023	nicn1 (ENSCCRG00000012423)	ENSCCRG00000082314	ENSCCRG00000054387	dag1 (ENSCCRG00000031847)
Golden-line barbel	MODERN SPECIES	421	HYKK (ENSSGRG00000023663)	NMUR1 (ENSSGRG00000023662)	dynlt2b (ENSSGRG00000023661)	ENSSGRG00000023659	ENSSGRG00000023658	ENSSGRG00000023657	ENSSGRG00000023656	ENSSGRG00000023655	ENSSGRG00000023654	ENSSGRG00000023651	TSC22D2 (ENSSGRG00000023650)	pfn2b (ENSSGRG00000023648)	rnf13 (ENSSGRG00000023596)	srfa (ENSSGRG00000023593)	EFEMP1 (ENSSGRG00000023592)	armh3 (ENSSGRG00000023156) #22	KCNIP2 (ENSSGRG00000023068) #23	ENSSGRG00000023058	ENSSGRG00000023056	slit1b (ENSSGRG00000023052)	ENSSGRG00000023049	ENSSGRG00000023047	hoga1 (ENSSGRG00000023045)	atpv0e2 (ENSSGRG00000023044)	ENSSGRG00000023043	terf2ip (ENSSGRG00000023042)	RNF123 (ENSSGRG00000022461)
Goldfish	MODERN SPECIES	41	alpi.1 (ENSCARG00000041115)	NMUR1 (ENSCARG00000041053)	ENSCARG00000041040	ENSCARG00000040980	ENSCARG00000040862	ENSCARG00000040762	ENSCARG00000040346	ENSCARG00000040292	ENSCARG00000040286	ENSCARG00000040281	pfn2b (ENSCARG00000040238)	rnf13 (ENSCARG00000040153)	srfa (ENSCARG00000040068)	ENSCARG00000040027	ENSCARG00000040018	armh3 (ENSCARG00000039679) #22	KCNIP2 (ENSCARG00000039607) #23	slit1b (ENSCARG00000038380)	ENSCARG00000038298	ENSCARG00000038274	GRM7 (ENSCARG00000037657)	ENSCARG00000037537	ENSCARG00000037528	ENSCARG00000037473	ENSCARG00000037456	ENSCARG00000037446	RNF123 (ENSCARG00000037082)	ENSCARG00000036999	ENSCARG00000036993	ENSCARG00000036842	atpv0e2 (ENSCARG00000036787)
Cyprininae	ANCESTRAL SPECIES	389	ENSGT00940000157606.n	ENSGT00390000018026.b	ENSGT00390000018195	ENSGT00940000165367	ENSGT00940000158024.C.e.a	ENSGT00390000011314	ENSGT01100000263484.A.c.a.a.b.a	ENSGT00940000164175.a.p	ENSGT00940000164924.b.k.a.b	ENSGT00940000164924.b.k.a.a	ENSGT00940000164924.b.l	ENSGT00940000164924.b.k.b.b	ENSGT00940000164221.b.j	ENSGT00940000165727.c	ENSGT00940000157837.d.d	ENSGT00390000002554.l #22	ENSGT00940000157798.b.a #23	ENSGT00940000157331.b.a	ENSGT00940000157322.b.b.b	ENSGT00940000162611.a.a.a.h	ENSGT00940000162611.b.b	ENSGT00530000063604.A.a	ENSGT00940000162476.f
Goldfish	MODERN SPECIES	14	hykk.2 (ENSCARG00000012566)	NMUR1 (ENSCARG00000012560)	dynlt2b (ENSCARG00000012554)	ENSCARG00000012552	ENSCARG00000012542	ENSCARG00000012527	ENSCARG00000012519	ENSCARG00000012516	ENSCARG00000012494	ENSCARG00000012403	tsc22d2 (ENSCARG00000012385)	pfn2b (ENSCARG00000012373)	rnf13 (ENSCARG00000012342)	srfa (ENSCARG00000012286)	ENSCARG00000012269	armh3 (ENSCARG00000012164) #22	KCNIP2 (ENSCARG00000012071) #23	ARHGAP19 (ENSCARG00000012026)	ENSCARG00000012016	hoga1 (ENSCARG00000011993)	atpv0e2 (ENSCARG00000011985)	ENSCARG00000011983	ENSCARG00000011974	ENSCARG00000010586	klc4 (ENSCARG00000010522)	soul4 (ENSCARG00000010514)	ptk7a (ENSCARG00000008293)	MARK1 (ENSCARG00000006623)	ENSCARG00000006469	ENSCARG00000006443	ENSCARG00000006427
Cyprininae_a	ANCESTRAL SPECIES	143	ENSGT01100000263484.A.c.a.a.b.b	ENSGT00940000160019.h	ENSGT00940000164175.a.o	ENSGT00940000160019.g	ENSGT00940000164175.a.p	ENSGT00940000164924.b.k.a.b	ENSGT00940000164924.b.k.a.a	ENSGT00940000164924.b.l	ENSGT00940000164924.b.k.b.b	ENSGT00940000164221.b.j	ENSGT00940000165727.c	ENSGT00940000153664.B.r.c.a.b	ENSGT00940000154942.f.f.a	ENSGT00400000022158.b.h	ENSGT00940000157837.d.d	ENSGT00390000002554.l #22	ENSGT00940000157798.b.a #23	ENSGT00940000157331.b.a.i	ENSGT00940000157322.b.b.a	ENSGT00940000162611.a.a.a.g	ENSGT00530000063604.A.b	ENSGT00940000162476.e.b	ENSGT00950000183209.b.a.a.h.b.a	ENSGT00940000164764.i.a	ENSGT00940000164764.j.b.b	ENSGT00940000165109.b	ENSGT00940000157908.h.b	ENSGT00940000157560.d.a.g	ENSGT00950000182772.A.b	ENSGT00940000163836.a.b.a	ENSGT00940000154196.b.c
Common carp reference	MODERN SPECIES	5	ENSCCRG00000045664	ENSCCRG00000070060	ENSCCRG00000045667	ENSCCRG00000045669	ENSCCRG00000045671	ENSCCRG00000045675	ENSCCRG00000036938	ENSCCRG00000036928	ENSCCRG00000036924	ENSCCRG00000036923	tsc22d2 (ENSCCRG00000019124)	pfn2b (ENSCCRG00000019117)	rnf13 (ENSCCRG00000019102)	srfa (ENSCCRG00000078018)	ENSCCRG00000036776	armh3 (ENSCCRG00000034896) #22	ENSCCRG00000029597 #23	ENSCCRG00000029613	slit1b (ENSCCRG00000082250)	ENSCCRG00000064155	hoga1 (ENSCCRG00000037731)	atpv0e2 (ENSCCRG00000037723)	ENSCCRG00000062623	ENSCCRG00000057807	klc4 (ENSCCRG00000056204)	soul4 (ENSCCRG00000071566)	ptk7a (ENSCCRG00000021855)	ENSCCRG00000004540	ENSCCRG00000010585	ENSCCRG00000010589	rcor3 (ENSCCRG00000010592)
Golden-line barbel	MODERN SPECIES	102														srfa (ENSSGRG00000011042)	ENSSGRG00000011041	armh3 (ENSSGRG00000010978) #22	KCNIP2 (ENSSGRG00000010921) #23	ARHGAP19 (ENSSGRG00000010851)	slit1b (ENSSGRG00000010840)	ENSSGRG00000010837	hoga1 (ENSSGRG00000010798)	atpv0e2 (ENSSGRG00000010797)	atpv0e2 (ENSSGRG00000010796)	ENSSGRG00000010795	ENSSGRG00000010793	ENSSGRG00000010542	klc4 (ENSSGRG00000010519)	ENSSGRG00000010514	soul4 (ENSSGRG00000010511)	ptk7a (ENSSGRG00000009831)	MARK1 (ENSSGRG00000009418)
Zebrafish	MODERN SPECIES	14	polr2h (ENSDARG00000038505)	ENSDARG00000087525	ENSDARG00000103576	ENSDARG00000109663	hykk.2 (ENSDARG00000074341)	NMUR1 (ENSDARG00000060884)	dynlt2b (ENSDARG00000054255)	ENSDARG00000077959	ENSDARG00000102675	ENSDARG00000078752	tsc22d2 (ENSDARG00000041839)	pfn2b (ENSDARG00000003952)	rnf13 (ENSDARG00000019438)	srfa (ENSDARG00000053918)	ENSDARG00000104210	armh3 (ENSDARG00000104285) #22	KCNIP2 (ENSDARG00000075846) #23	ARHGAP19 (ENSDARG00000083189)	slit1b (ENSDARG00000099446)	ENSDARG00000100908	hoga1 (ENSDARG00000018944)	atpv0e2 (ENSDARG00000059057)	ENSDARG00000116068	HYKK (ENSDARG00000077610)	ENSDARG00000087901	ENSDARG00000087407	ENSDARG00000109630	ENSDARG00000060953	terf2ip (ENSDARG00000103977)	AMIGO3 (ENSDARG00000074469)	RNF123 (ENSDARG00000031269)
Euteleosteomorpha	ANCESTRAL SPECIES	68	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000157145	ENSGT00940000179277	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157331.b.b	ENSGT00940000157322.b.a	ENSGT00940000162611.a.b	ENSGT00940000170319	ENSGT00940000154965.A	ENSGT00940000162611.a.a.b	ENSGT00730000111173.g	ENSGT00940000153956.b
Acanthomorphata	ANCESTRAL SPECIES	95	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b
Euacanthomorphacea	ANCESTRAL SPECIES	3	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Percomorphaceae	ANCESTRAL SPECIES	20	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Tiger tail seahorse	MODERN SPECIES	382	SIRT7 (ENSHCOG00000015014)	ENSHCOG00000015027	MAFG (ENSHCOG00000015051)	ENSHCOG00000015090	ENSHCOG00000015097	aspscr1 (ENSHCOG00000015163)	TMC6 (ENSHCOG00000015176)	TMC8 (ENSHCOG00000015222)	syngr2b (ENSHCOG00000015227)	tk1 (ENSHCOG00000015236)	afmid (ENSHCOG00000015242)	cant1b (ENSHCOG00000015276)	ENSHCOG00000015318 ##24	ENSHCOG00000015325 #19	ldb1b (ENSHCOG00000015353) #20	armh3 (ENSHCOG00000015410) #22	KCNIP2 (ENSHCOG00000015439) #23	jupa (ENSHCOG00000015466)	ENSHCOG00000015579	ENSHCOG00000000435	krt99 (ENSHCOG00000015602)	krt15 (ENSHCOG00000015609)	krt98 (ENSHCOG00000015617)	krt94 (ENSHCOG00000015619)	SMAP1 (ENSHCOG00000015623)	cenpk (ENSHCOG00000015628)	lbx1b (ENSHCOG00000015655)	slc2a15b (ENSHCOG00000015684)	fgf8b (ENSHCOG00000015697) #26	dpcd (ENSHCOG00000015714) #28	poll (ENSHCOG00000015721) #29
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Ovalentaria	ANCESTRAL SPECIES		ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Ovalentaria_B	ANCESTRAL SPECIES	4	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Cichlidae	ANCESTRAL SPECIES	3	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00950000182933.A.a.b	ENSGT00940000153212.p	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Nile tilapia	MODERN SPECIES	18	ENSONIG00000031715	ENSONIG00000040220	aspscr1 (ENSONIG00000018780)	NOTUM (ENSONIG00000018783)	TMC6 (ENSONIG00000018785)	TMC8 (ENSONIG00000018787)	ENSONIG00000037175	ENSONIG00000042508	syngr2b (ENSONIG00000018788)	tk1 (ENSONIG00000018789)	afmid (ENSONIG00000018792)	cant1b (ENSONIG00000018793)	ENSONIG00000018794 ##24	si:dkey-93h22.8 (ENSONIG00000033606) #19	ldb1b (ENSONIG00000018797) #20	armh3 (ENSONIG00000018799) #22	KCNIP2 (ENSONIG00000018800) #23	jupa (ENSONIG00000018803)	ENSONIG00000018805	krt98 (ENSONIG00000018810)	ENSONIG00000032121	krt99 (ENSONIG00000018806)	krt15 (ENSONIG00000037937)	krt94 (ENSONIG00000018807)	SMAP1 (ENSONIG00000018813)	cenpk (ENSONIG00000018814)	lbx1b (ENSONIG00000036425)	slc2a15b (ENSONIG00000018816)	fgf8b (ENSONIG00000031278) #26	ENSONIG00000035113	dpcd (ENSONIG00000018819) #28
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000153212.p	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Haplochromini	ANCESTRAL SPECIES	3	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000153212.p	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031.e.a #28	ENSGT00940000158515 #29
Burton s mouthbrooder	MODERN SPECIES	337	MAFG (ENSHBUG00000019029)	ENSHBUG00000019060	ENSHBUG00000019074	ENSHBUG00000019081	aspscr1 (ENSHBUG00000019095)	NOTUM (ENSHBUG00000019119)	TMC6 (ENSHBUG00000019143)	TMC8 (ENSHBUG00000019177)	syngr2b (ENSHBUG00000019197)	tk1 (ENSHBUG00000019236)	afmid (ENSHBUG00000019247)	cant1b (ENSHBUG00000019276)	ENSHBUG00000019327 ##24	si:dkey-93h22.8 (ENSHBUG00000019347) #19	ldb1b (ENSHBUG00000019378) #20	armh3 (ENSHBUG00000019565) #22	KCNIP2 (ENSHBUG00000019621) #23	jupa (ENSHBUG00000019714)	ENSHBUG00000000586	ENSHBUG00000019747	krt15 (ENSHBUG00000019759)	krt98 (ENSHBUG00000019771)	krt94 (ENSHBUG00000019853)	SMAP1 (ENSHBUG00000019912)	cenpk (ENSHBUG00000019922)	lbx1b (ENSHBUG00000019934)	slc2a15b (ENSHBUG00000019972)	fgf8b (ENSHBUG00000020004) #26	dpcd (ENSHBUG00000020045) #28	poll (ENSHBUG00000020101) #29	wbp1lb (ENSHBUG00000020110)
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000153212.p	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031.e.a #28	ENSGT00390000014031.f #28
P. nyererei	MODERN SPECIES	360	MAFG (ENSPNYG00000002228)	ENSPNYG00000002243	ENSPNYG00000002275	ENSPNYG00000002307	aspscr1 (ENSPNYG00000002321)	NOTUM (ENSPNYG00000002336)	TMC6 (ENSPNYG00000002422)	TMC8 (ENSPNYG00000002456)	syngr2b (ENSPNYG00000002480)	tk1 (ENSPNYG00000002489)	afmid (ENSPNYG00000002523)	cant1b (ENSPNYG00000002587)	ENSPNYG00000002625 ##24	si:dkey-93h22.8 (ENSPNYG00000002682) #19	ldb1b (ENSPNYG00000002704) #20	armh3 (ENSPNYG00000002768) #22	KCNIP2 (ENSPNYG00000002869) #23	jupa (ENSPNYG00000002908)	ENSPNYG00000002974	ENSPNYG00000003128	krt99 (ENSPNYG00000003158)	krt15 (ENSPNYG00000003167)	krt98 (ENSPNYG00000003181)	krt94 (ENSPNYG00000003207)	SMAP1 (ENSPNYG00000003337)	cenpk (ENSPNYG00000003376)	lbx1b (ENSPNYG00000003403)	slc2a15b (ENSPNYG00000003459)	fgf8b (ENSPNYG00000003504) #26	dpcd (ENSPNYG00000003582) #28	poll (ENSPNYG00000003613) #29
Haplochromini_B	ANCESTRAL SPECIES	23	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000153212.p	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031.f #28	ENSGT00940000158515 #29
Eastern happy	MODERN SPECIES	18	MAFG (ENSACLG00000019998)	ENSACLG00000019971	ENSACLG00000019960	ENSACLG00000019944	aspscr1 (ENSACLG00000019805)	NOTUM (ENSACLG00000019776)	TMC6 (ENSACLG00000019720)	TMC8 (ENSACLG00000019683)	syngr2b (ENSACLG00000019666)	tk1 (ENSACLG00000019632)	afmid (ENSACLG00000019597)	cant1b (ENSACLG00000019543)	ENSACLG00000019393 ##24	si:dkey-93h22.8 (ENSACLG00000019359) #19	ldb1b (ENSACLG00000019279) #20	armh3 (ENSACLG00000019143) #22	KCNIP2 (ENSACLG00000019119) #23	jupa (ENSACLG00000019071)	ENSACLG00000019016	ENSACLG00000019032	krt99 (ENSACLG00000019002)	krt15 (ENSACLG00000018979)	krt98 (ENSACLG00000018967)	krt94 (ENSACLG00000018950)	ENSACLG00000018945	SMAP1 (ENSACLG00000018925)	cenpk (ENSACLG00000018904)	lbx1b (ENSACLG00000018897)	slc2a15b (ENSACLG00000018850)	dpcd (ENSACLG00000018832) #28	poll (ENSACLG00000018810) #29
Zebra mbuna	MODERN SPECIES	1109	MAFG (ENSMZEG00005007955)	ENSMZEG00005007964	ENSMZEG00005007974	ENSMZEG00005007980	aspscr1 (ENSMZEG00005007985)	NOTUM (ENSMZEG00005008014)	TMC6 (ENSMZEG00005008039)	TMC8 (ENSMZEG00005008074)	syngr2b (ENSMZEG00005008085)	tk1 (ENSMZEG00005008093)	afmid (ENSMZEG00005008119)	cant1b (ENSMZEG00005008140)	ENSMZEG00005008173 ##24	si:dkey-93h22.8 (ENSMZEG00005008228) #19	ldb1b (ENSMZEG00005008245) #20	armh3 (ENSMZEG00005008281) #22	KCNIP2 (ENSMZEG00005008364) #23	jupa (ENSMZEG00005008391)	ENSMZEG00005008443	ENSMZEG00005008461	krt99 (ENSMZEG00005008473)	krt15 (ENSMZEG00005008487)	krt98 (ENSMZEG00005008496)	krt94 (ENSMZEG00005008511)	SMAP1 (ENSMZEG00005008548)	cenpk (ENSMZEG00005008583)	lbx1b (ENSMZEG00005008600)	slc2a15b (ENSMZEG00005008607)	fgf8b (ENSMZEG00005008642) #26	dpcd (ENSMZEG00005008653) #28	poll (ENSMZEG00005008677) #29
Lyretail cichlid	MODERN SPECIES	308	ENSNBRG00000023646	ENSNBRG00000023635	ENSNBRG00000023461	ENSNBRG00000023356	aspscr1 (ENSNBRG00000023333)	NOTUM (ENSNBRG00000023299)	TMC6 (ENSNBRG00000023281)	ENSNBRG00000023261	syngr2b (ENSNBRG00000023245)	tk1 (ENSNBRG00000023233)	afmid (ENSNBRG00000023215)	cant1b (ENSNBRG00000023191)	ENSNBRG00000023168 ##24	ENSNBRG00000023152 #19	ldb1b (ENSNBRG00000023119) #20	armh3 (ENSNBRG00000023092) #22	jupa (ENSNBRG00000023053)	ENSNBRG00000023010	ENSNBRG00000022987	krt15 (ENSNBRG00000022980)	krt98 (ENSNBRG00000022456)	krt94 (ENSNBRG00000022244)	SMAP1 (ENSNBRG00000022222)	cenpk (ENSNBRG00000022205)	lbx1b (ENSNBRG00000022180)	slc2a15b (ENSNBRG00000022146)	fgf8b (ENSNBRG00000022061) #26	dpcd (ENSNBRG00000022033) #28	poll (ENSNBRG00000022014) #29	wbp1lb (ENSNBRG00000021999)	as3mt (ENSNBRG00000021942)
Midas cichlid	MODERN SPECIES	1113	SIRT7 (ENSACIG00000008760)	MAFG (ENSACIG00000008743)	ENSACIG00000008721	ENSACIG00000008706	ENSACIG00000008695	aspscr1 (ENSACIG00000008662)	NOTUM (ENSACIG00000008639)	TMC6 (ENSACIG00000008608)	TMC8 (ENSACIG00000008565)	syngr2b (ENSACIG00000008502)	tk1 (ENSACIG00000008324)	afmid (ENSACIG00000008288)	cant1b (ENSACIG00000008270)	ENSACIG00000008238 ##24	ldb1b (ENSACIG00000008206) #20	armh3 (ENSACIG00000008152) #22	KCNIP2 (ENSACIG00000008119) #23	jupa (ENSACIG00000008093)	ENSACIG00000008033	ENSACIG00000008017	krt15 (ENSACIG00000007504)	krt98 (ENSACIG00000007137)	krt94 (ENSACIG00000007065)	smap1 (ENSACIG00000007041)	cenpk (ENSACIG00000007018)	lbx1b (ENSACIG00000007010)	slc2a15b (ENSACIG00000006971)	fgf8b (ENSACIG00000006920) #26	dpcd (ENSACIG00000006893) #28	poll (ENSACIG00000006868) #29	wbp1lb (ENSACIG00000006833)
Pomacentridae	ANCESTRAL SPECIES	20	ENSGT00390000004090	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Bicolor damselfish	MODERN SPECIES	2499																armh3 (ENSSPAG00000014905) #22
Pomacentridae_A	ANCESTRAL SPECIES	13	ENSGT00390000004090	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Spiny chromis	MODERN SPECIES	26	ENSAPOG00000010085	MAFG (ENSAPOG00000010112)	ENSAPOG00000010152	ENSAPOG00000010174	aspscr1 (ENSAPOG00000010186)	NOTUM (ENSAPOG00000010235)	TMC6 (ENSAPOG00000010264)	TMC8 (ENSAPOG00000010370)	syngr2b (ENSAPOG00000010381)	tk1 (ENSAPOG00000010390)	afmid (ENSAPOG00000010397)	cant1b (ENSAPOG00000010438)	ENSAPOG00000010513 ##24	si:dkey-93h22.8 (ENSAPOG00000001094) #19	ldb1b (ENSAPOG00000010548) #20	armh3 (ENSAPOG00000000943) #22	KCNIP2 (ENSAPOG00000010714) #23	jupa (ENSAPOG00000010772)	ENSAPOG00000010819	ENSAPOG00000010890	krt99 (ENSAPOG00000010904)	krt15 (ENSAPOG00000010913)	krt98 (ENSAPOG00000010924)
Amphiprion	ANCESTRAL SPECIES		ENSGT00390000004090	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Orange clownfish	DUPLICATION
Orange clownfish	MODERN SPECIES	17	ENSAPEG00000014166	ENSAPEG00000014189	ENSAPEG00000014198	aspscr1 (ENSAPEG00000014220)	NOTUM (ENSAPEG00000014253)	TMC6 (ENSAPEG00000014297)	TMC8 (ENSAPEG00000014347)	ENSAPEG00000014415	syngr2b (ENSAPEG00000014445)	tk1 (ENSAPEG00000014473)	afmid (ENSAPEG00000014484)	cant1b (ENSAPEG00000014521)	ENSAPEG00000014551 ##24	si:dkey-93h22.8 (ENSAPEG00000014568) #19	ldb1b (ENSAPEG00000014581) #20	armh3 (ENSAPEG00000014610) #22	ENSAPEG00000014715	ENSAPEG00000014736	ENSAPEG00000014752	ENSAPEG00000014774	ENSAPEG00000014796	ENSAPEG00000014813	ENSAPEG00000014924	ENSAPEG00000014936	ENSAPEG00000014943	ENSAPEG00000014962	dpy30 (ENSAPEG00000014984)	srd5a2a (ENSAPEG00000015026)	TMEM63B (ENSAPEG00000015116)	kat14 (ENSAPEG00000015176)	PET117 (ENSAPEG00000015208)
Orange clownfish	MODERN SPECIES	17	ENSAPEG00000000519	GPM6A (ENSAPEG00000000463)	ENSAPEG00000000458	glra3 (ENSAPEG00000000328)	hpgd (ENSAPEG00000021706)	ENSAPEG00000021689	ENSAPEG00000021665	hmgb2a (ENSAPEG00000021640)	pmm2 (ENSAPEG00000021615)	ENSAPEG00000021557	ENSAPEG00000021540	ENSAPEG00000021491	ENSAPEG00000021436	patl1 (ENSAPEG00000021391)	ENSAPEG00000021371	armh3 (ENSAPEG00000021305) #22	KCNIP2 (ENSAPEG00000021263) #23	jupa (ENSAPEG00000021206)	ENSAPEG00000021076	ENSAPEG00000021002	krt99 (ENSAPEG00000020988)	krt15 (ENSAPEG00000020944)	krt98 (ENSAPEG00000020925)	krt94 (ENSAPEG00000020916)	SMAP1 (ENSAPEG00000020861)	cenpk (ENSAPEG00000020835)	lbx1b (ENSAPEG00000020806)	slc2a15b (ENSAPEG00000020772)	fgf8b (ENSAPEG00000020700) #26	dpcd (ENSAPEG00000020676) #28	poll (ENSAPEG00000020633) #29
Clown anemonefish	DUPLICATION
Clown anemonefish	MODERN SPECIES	2109	MAFG (ENSAOCG00000001872)	ENSAOCG00000007797	ENSAOCG00000007811	aspscr1 (ENSAOCG00000007840)	NOTUM (ENSAOCG00000007882)	TMC6 (ENSAOCG00000007917)	ENSAOCG00000000448	TMC8 (ENSAOCG00000007991)	syngr2b (ENSAOCG00000008007)	tk1 (ENSAOCG00000008013)	afmid (ENSAOCG00000008051)	cant1b (ENSAOCG00000008085)	ENSAOCG00000008119 ##24	si:dkey-93h22.8 (ENSAOCG00000008140) #19	ldb1b (ENSAOCG00000008172) #20	armh3 (ENSAOCG00000008250) #22
Clown anemonefish	MODERN SPECIES	2780															ENSAOCG00000004747	armh3 (ENSAOCG00000004785) #22
Atherinomorphae	ANCESTRAL SPECIES	23	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Oryzias	ANCESTRAL SPECIES	28	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00940000158005	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Oryzias_b	ANCESTRAL SPECIES	25	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00940000158005	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Indian medaka	MODERN SPECIES	35	ENSOMEG00000012670	MAFG (ENSOMEG00000012627)	ENSOMEG00000012599	ENSOMEG00000012567	aspscr1 (ENSOMEG00000012552)	TMC6 (ENSOMEG00000012507)	ENSOMEG00000012410	syngr2b (ENSOMEG00000012392)	tk1 (ENSOMEG00000012372)	afmid (ENSOMEG00000012333)	cant1b (ENSOMEG00000012241)	ENSOMEG00000012211 ##24	si:dkey-93h22.8 (ENSOMEG00000012140) #19	ldb1b (ENSOMEG00000012071) #20	tk2 (ENSOMEG00000012043)	armh3 (ENSOMEG00000011996) #22	KCNIP2 (ENSOMEG00000011905) #23	jupa (ENSOMEG00000011864)	ENSOMEG00000011780	ENSOMEG00000011746	krt99 (ENSOMEG00000011727)	ENSOMEG00000011684	krt98 (ENSOMEG00000011645)	krt94 (ENSOMEG00000011603)	SMAP1 (ENSOMEG00000011561)	cenpk (ENSOMEG00000011482)	lbx1b (ENSOMEG00000011455)	slc2a15b (ENSOMEG00000011443)	fgf8b (ENSOMEG00000011400) #26	dpcd (ENSOMEG00000011358) #28	poll (ENSOMEG00000011333) #29
Javanese ricefish	MODERN SPECIES		ENSOJAG00000001583	ENSOJAG00000001550	ENSOJAG00000001539	aspscr1 (ENSOJAG00000001510)	TMC6 (ENSOJAG00000001484)	ENSOJAG00000001467	ENSOJAG00000001453	syngr2b (ENSOJAG00000001446)	tk1 (ENSOJAG00000001442)	afmid (ENSOJAG00000001429)	cant1b (ENSOJAG00000001423)	ENSOJAG00000001418 ##24	ENSOJAG00000001413	ldb1b (ENSOJAG00000001294) #20	tk2 (ENSOJAG00000001245)	armh3 (ENSOJAG00000001194) #22	KCNIP2 (ENSOJAG00000001166) #23	jupa (ENSOJAG00000000979)	ENSOJAG00000000881	ENSOJAG00000000871	krt99 (ENSOJAG00000000865)	ENSOJAG00000000812	krt98 (ENSOJAG00000000775)	KRT19 (ENSOJAG00000000485)	ENSOJAG00000000325	SMAP1 (ENSOJAG00000000318)	cenpk (ENSOJAG00000000304)	lbx1b (ENSOJAG00000000302)	slc2a15b (ENSOJAG00000000287)	fgf8b (ENSOJAG00000000269) #26	dpcd (ENSOJAG00000000263) #28
Oryzias_a	ANCESTRAL SPECIES	34	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT01050000244894.b.b.d.a	ENSGT00940000175759	ENSGT01050000244894.a.a.a.b	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00940000158005	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Japanese Medaka HdrR	MODERN SPECIES		TMC6 (ENSORLG00000012252)	ENSORLG00000002297	ENSORLG00000018498	TMC8 (ENSORLG00000012270)	ENSORLG00000029767	syngr2b (ENSORLG00000012291)	tk1 (ENSORLG00000012303)	afmid (ENSORLG00000012308)	cant1b (ENSORLG00000012320)	ENSORLG00000012348 ##24	si:dkey-93h22.8 (ENSORLG00000012355) #19	ENSORLG00000028445	ENSORLG00000022645	ldb1b (ENSORLG00000012373) #20	tk2 (ENSORLG00000012380)	armh3 (ENSORLG00000012426) #22	ENSORLG00000012486 #23	jupa (ENSORLG00000012542)	ENSORLG00000025102	ENSORLG00000012551	krt99 (ENSORLG00000012569)	ENSORLG00000012618	krt98 (ENSORLG00000012646)	krt94 (ENSORLG00000012662)	SMAP1 (ENSORLG00000012694)	cenpk (ENSORLG00000012705)	lbx1b (ENSORLG00000012711)	slc2a15b (ENSORLG00000012848)	fgf8b (ENSORLG00000012857) #26	dpcd (ENSORLG00000027280) #28	poll (ENSORLG00000012875) #29
Chinese medaka	MODERN SPECIES	305													ENSOSIG00000000210	ldb1b (ENSOSIG00000000167) #20	tk2 (ENSOSIG00000000108)	armh3 (ENSOSIG00000016208) #22	KCNIP2 (ENSOSIG00000016202) #23	jupa (ENSOSIG00000016174)	ENSOSIG00000016159	ENSOSIG00000016157	ENSOSIG00000016154	ENSOSIG00000016151	krt98 (ENSOSIG00000016149)	krt94 (ENSOSIG00000016147)	ENSOSIG00000016145	cenpk (ENSOSIG00000016144)	lbx1b (ENSOSIG00000016142)	slc2a15b (ENSOSIG00000016129)	fgf8b (ENSOSIG00000015992) #26	dpcd (ENSOSIG00000015989) #28	poll (ENSOSIG00000015983) #29
Cyprinodontiformes	ANCESTRAL SPECIES	24	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Aplocheiloidei	ANCESTRAL SPECIES	31	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Mangrove rivulus	MODERN SPECIES	38	MAFG (ENSKMAG00000019014)	ENSKMAG00000019045	ENSKMAG00000019081	aspscr1 (ENSKMAG00000019094)	NOTUM (ENSKMAG00000019123)	TMC6 (ENSKMAG00000019155)	TMC8 (ENSKMAG00000019198)	ENSKMAG00000019320	syngr2b (ENSKMAG00000019727)	tk1 (ENSKMAG00000019744)	afmid (ENSKMAG00000019775)	cant1b (ENSKMAG00000019804)	ENSKMAG00000019823 ##24	si:dkey-93h22.8 (ENSKMAG00000019855) #19	ldb1b (ENSKMAG00000019878) #20	armh3 (ENSKMAG00000019917) #22	KCNIP2 (ENSKMAG00000019986) #23	jupa (ENSKMAG00000020020)	ENSKMAG00000020079	ENSKMAG00000020171	krt99 (ENSKMAG00000020185)	krt15 (ENSKMAG00000020200)	krt98 (ENSKMAG00000020226)	krt94 (ENSKMAG00000020377)	SMAP1 (ENSKMAG00000020892)	cenpk (ENSKMAG00000020916)	lbx1b (ENSKMAG00000020930)	slc2a15b (ENSKMAG00000020935)	fgf8b (ENSKMAG00000020954) #26	dpcd (ENSKMAG00000020966) #28	poll (ENSKMAG00000020989) #29
Turquoise killifish	MODERN SPECIES	1611	ENSNFUG00015001424	MAFG (ENSNFUG00015001418)	ENSNFUG00015001413	OLA.16066 (ENSNFUG00015001395)	ENSNFUG00015001375	aspscr1 (ENSNFUG00015001365)	TMC6 (ENSNFUG00015001312)	ENSNFUG00015001295	SYNGR2 (ENSNFUG00015001286)	tk1 (ENSNFUG00015001270)	AFMID (ENSNFUG00015001242)	CANT1 (ENSNFUG00015001232)	ENSNFUG00015001227 ##24	PPRC1 (ENSNFUG00015001224) #19	LDB1 (ENSNFUG00015001141) #20	armh3 (ENSNFUG00015001107) #22	KCNIP2 (ENSNFUG00015001093) #23	jupa (ENSNFUG00015001005)	ENSNFUG00015000872	ENSNFUG00015000845	krt99 (ENSNFUG00015000839)	krt15 (ENSNFUG00015000834)	krt98 (ENSNFUG00015000761)	krt98 (ENSNFUG00015000712)	ENSNFUG00015000705	krt94 (ENSNFUG00015000694)	SMAP1 (ENSNFUG00015000682)	ENSNFUG00015000676	lbx1b (ENSNFUG00015000669)	nt5c2b (ENSNFUG00015000542)	INAB (ENSNFUG00015000460)
Cyprinodontoidei	ANCESTRAL SPECIES	15	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a.h	ENSGT00950000182969.B.c.a.a.a.g	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28
Poecilia	ANCESTRAL SPECIES	6	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00950000183052.b.c.b.b.a.a.a.b.c.a.a.c	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a.h	ENSGT00950000182969.B.c.a.a.a.g	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26
NAME_6	ANCESTRAL SPECIES	96	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22
Amazon molly	MODERN SPECIES	506	MAFG (ENSPFOG00000002983)	ENSPFOG00000002863	ENSPFOG00000021992	aspscr1 (ENSPFOG00000002615)	NOTUM (ENSPFOG00000002456)	TMC6 (ENSPFOG00000002182)	TMC8 (ENSPFOG00000001925)	ENSPFOG00000024276	syngr2b (ENSPFOG00000024151)	tk1 (ENSPFOG00000001761)	afmid (ENSPFOG00000001639)	cant1b (ENSPFOG00000001512)	ENSPFOG00000001376 ##24	si:dkey-93h22.8 (ENSPFOG00000001320) #19	ldb1b (ENSPFOG00000001150) #20	armh3 (ENSPFOG00000000800) #22
Sailfin molly	MODERN SPECIES	448	ENSPLAG00000001617	MAFG (ENSPLAG00000001625)	ENSPLAG00000001634	ENSPLAG00000001639	aspscr1 (ENSPLAG00000001645)	NOTUM (ENSPLAG00000001652)	TMC6 (ENSPLAG00000001666)	TMC8 (ENSPLAG00000001684)	syngr2b (ENSPLAG00000001696)	tk1 (ENSPLAG00000000687)	afmid (ENSPLAG00000001712)	cant1b (ENSPLAG00000001726)	ENSPLAG00000001755 ##24	si:dkey-93h22.8 (ENSPLAG00000001769) #19	ldb1b (ENSPLAG00000001779) #20	armh3 (ENSPLAG00000001809) #22
Guppy	MODERN SPECIES	439	ENSPREG00000000433	MAFG (ENSPREG00000000434)	ENSPREG00000000435	ENSPREG00000000436	aspscr1 (ENSPREG00000000437)	NOTUM (ENSPREG00000000438)	TMC6 (ENSPREG00000000439)	TMC8 (ENSPREG00000000440)	syngr2b (ENSPREG00000000441)	tk1 (ENSPREG00000000442)	afmid (ENSPREG00000000443)	cant1b (ENSPREG00000000444)	ENSPREG00000000445 ##24	si:dkey-93h22.8 (ENSPREG00000000446) #19	ldb1b (ENSPREG00000000447) #20	armh3 (ENSPREG00000000448) #22	ENSPREG00000000449	KCNIP2 (ENSPREG00000000450) #23	ENSPREG00000000451	jupa (ENSPREG00000000452)	ENSPREG00000000453	ENSPREG00000000454	krt99 (ENSPREG00000000455)	krt15 (ENSPREG00000000456)	krt98 (ENSPREG00000000457)	ENSPREG00000000458	krt94 (ENSPREG00000000459)	SMAP1 (ENSPREG00000000460)	cenpk (ENSPREG00000000461)	lbx1b (ENSPREG00000000462)	slc2a15b (ENSPREG00000000463)
Platyfish	MODERN SPECIES	19	SIRT7 (ENSXMAG00000012959)	ENSXMAG00000026314	MAFG (ENSXMAG00000012964)	ENSXMAG00000012965	aspscr1 (ENSXMAG00000000292)	NOTUM (ENSXMAG00000023668)	TMC6 (ENSXMAG00000000278)	TMC8 (ENSXMAG00000000266)	syngr2b (ENSXMAG00000027054)	tk1 (ENSXMAG00000000253)	afmid (ENSXMAG00000000249)	cant1b (ENSXMAG00000000246)	ENSXMAG00000000245 ##24	si:dkey-93h22.8 (ENSXMAG00000000243) #19	ldb1b (ENSXMAG00000027796) #20	armh3 (ENSXMAG00000000219) #22	KCNIP2 (ENSXMAG00000000215) #23	ENSXMAG00000029713	ENSXMAG00000023553	jupa (ENSXMAG00000000209)	ENSXMAG00000025286	ENSXMAG00000000197	krt99 (ENSXMAG00000023618)	krt15 (ENSXMAG00000000173)	krt98 (ENSXMAG00000000157)	ENSXMAG00000025322	ENSXMAG00000023373	krt94 (ENSXMAG00000000155)	SMAP1 (ENSXMAG00000000144)	cenpk (ENSXMAG00000000139)	lbx1b (ENSXMAG00000012488)
NAME_4	ANCESTRAL SPECIES	28	ENSGT00390000004090	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Mummichog	MODERN SPECIES	375	MAFG (ENSFHEG00000018755)	ENSFHEG00000000669	ENSFHEG00000018790	ENSFHEG00000018798	aspscr1 (ENSFHEG00000018915)	NOTUM (ENSFHEG00000018956)	TMC6 (ENSFHEG00000018970)	TMC8 (ENSFHEG00000018980)	syngr2b (ENSFHEG00000018990)	tk1 (ENSFHEG00000019021)	afmid (ENSFHEG00000019033)	cant1b (ENSFHEG00000019061)	ENSFHEG00000019101 ##24	ENSFHEG00000019110 #19	ldb1b (ENSFHEG00000019148) #20	armh3 (ENSFHEG00000019214) #22
Sheepshead minnow	MODERN SPECIES	422	ENSCVAG00000019943	MAFG (ENSCVAG00000019929)	ENSCVAG00000019911	ENSCVAG00000019885	aspscr1 (ENSCVAG00000019879)	NOTUM (ENSCVAG00000000737)	TMC6 (ENSCVAG00000019814)	TMC8 (ENSCVAG00000019794)	syngr2b (ENSCVAG00000019785)	tk1 (ENSCVAG00000019778)	afmid (ENSCVAG00000019732)	cant1b (ENSCVAG00000019707)	ENSCVAG00000019679 ##24	si:dkey-93h22.8 (ENSCVAG00000019596) #19	ldb1b (ENSCVAG00000019587) #20	armh3 (ENSCVAG00000019564) #22	ENSCVAG00000019480 #23	jupa (ENSCVAG00000019461)	ENSCVAG00000019409	ENSCVAG00000019152	krt99 (ENSCVAG00000019139)	krt15 (ENSCVAG00000019131)	krt98 (ENSCVAG00000019102)	ENSCVAG00000000499	ENSCVAG00000019084	krt94 (ENSCVAG00000019039)	SMAP1 (ENSCVAG00000018803)	cenpk (ENSCVAG00000018796)	lbx1b (ENSCVAG00000018786)	slc2a15b (ENSCVAG00000018773)	fgf8b (ENSCVAG00000018762) #26
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Eupercaria	ANCESTRAL SPECIES	2	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Eupecaria_C	ANCESTRAL SPECIES	22	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	21	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29	ENSGT00950000183109.c.a.a.a.b
European seabass	MODERN SPECIES	20	ENSDLAG00005029633	ENSDLAG00005011813	ENSDLAG00005030103	aspscr1 (ENSDLAG00005025150)	ENSDLAG00005025069	TMC6 (ENSDLAG00005025047)	TMC8 (ENSDLAG00005028642)	ENSDLAG00005025036	syngr2b (ENSDLAG00005033299)	tk1 (ENSDLAG00005030785)	afmid (ENSDLAG00005034245)	cant1b (ENSDLAG00005029318)	ENSDLAG00005025007 ##24	si:dkey-93h22.8 (ENSDLAG00005028092) #19	ldb1b (ENSDLAG00005024961) #20	ARMH3 (ENSDLAG00005024926) #22	KCNIP2 (ENSDLAG00005031164) #23	jupa (ENSDLAG00005024780)	ENSDLAG00005024684	ENSDLAG00005024681	krt99 (ENSDLAG00005024665)	krt15 (ENSDLAG00005024650)	krt98 (ENSDLAG00005029695)	krt94 (ENSDLAG00005024613)	ENSDLAG00005024602	lbx1b (ENSDLAG00005026330)	slc2a15b (ENSDLAG00005024529)	fgf8b (ENSDLAG00005034123) #26	dpcd (ENSDLAG00005024508) #28	poll (ENSDLAG00005024503) #29	wbp1lb (ENSDLAG00005024495)
Large yellow croaker	MODERN SPECIES	481	ENSLCRG00005022216	MAFG (ENSLCRG00005022217)	ENSLCRG00005002396	ENSLCRG00005002411	aspscr1 (ENSLCRG00005002423)	NOTUM (ENSLCRG00005002461)	TMC6 (ENSLCRG00005003214)	TMC8 (ENSLCRG00005003218)	syngr2b (ENSLCRG00005003224)	tk1 (ENSLCRG00005003228)	afmid (ENSLCRG00005003233)	cant1b (ENSLCRG00005003240)	ENSLCRG00005003245 ##24	si:dkey-93h22.8 (ENSLCRG00005003250) #19	ldb1b (ENSLCRG00005003254) #20	armh3 (ENSLCRG00005003267) #22	KCNIP2 (ENSLCRG00005003351) #23	jupa (ENSLCRG00005003367)	ENSLCRG00005003733	ENSLCRG00005003767	krt99 (ENSLCRG00005003768)	krt98 (ENSLCRG00005003770)	krt15 (ENSLCRG00005003773)	krt94 (ENSLCRG00005003776)	SMAP1 (ENSLCRG00005003780)	lbx1b (ENSLCRG00005003783)	slc2a15b (ENSLCRG00005003787)	fgf8b (ENSLCRG00005003796) #26	dpcd (ENSLCRG00005003799) #28	poll (ENSLCRG00005003801) #29	wbp1lb (ENSLCRG00005003802)
Gilthead seabream	MODERN SPECIES		aspscr1 (ENSSAUG00010001083)	NOTUM (ENSSAUG00010001089)	TMC6 (ENSSAUG00010001095)	TMC8 (ENSSAUG00010001103)	ENSSAUG00010001110	ENSSAUG00010001115	syngr2b (ENSSAUG00010001118)	tk1 (ENSSAUG00010001120)	afmid (ENSSAUG00010001124)	cant1b (ENSSAUG00010001126)	ENSSAUG00010001132 ##24	ENSSAUG00010001136	ENSSAUG00010001140	si:dkey-93h22.8 (ENSSAUG00010001142) #19	ldb1b (ENSSAUG00010001148) #20	armh3 (ENSSAUG00010001174) #22	KCNIP2 (ENSSAUG00010001214) #23	jupa (ENSSAUG00010001232)	ENSSAUG00010002410	ENSSAUG00010002849	krt99 (ENSSAUG00010002863)	krt15 (ENSSAUG00010002881)	krt98 (ENSSAUG00010002917)	SMAP1 (ENSSAUG00010003003)	cenpk (ENSSAUG00010003014)	lbx1b (ENSSAUG00010003024)	slc2a15b (ENSSAUG00010003054)	fgf8b (ENSSAUG00010003246) #26	dpcd (ENSSAUG00010003248) #28	poll (ENSSAUG00010003250) #29	wbp1lb (ENSSAUG00010003253)
Perciformes	ANCESTRAL SPECIES	2	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Perciformes_a	ANCESTRAL SPECIES		ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Pike perch	MODERN SPECIES	8	MAFG (ENSSLUG00000011872)	ENSSLUG00000011839	ENSSLUG00000011837	aspscr1 (ENSSLUG00000011832)	NOTUM (ENSSLUG00000011812)	TMC6 (ENSSLUG00000011795)	TMC8 (ENSSLUG00000011774)	ENSSLUG00000011757	syngr2b (ENSSLUG00000011754)	tk1 (ENSSLUG00000011746)	afmid (ENSSLUG00000011671)	cant1b (ENSSLUG00000011655)	ENSSLUG00000011643 ##24	ENSSLUG00000011635 #19	ldb1b (ENSSLUG00000011064) #20	armh3 (ENSSLUG00000010972) #22	ENSSLUG00000010956	KCNIP2 (ENSSLUG00000010934) #23	jupa (ENSSLUG00000010039)	ENSSLUG00000009988	ENSSLUG00000009982	krt99 (ENSSLUG00000009950)	krt15 (ENSSLUG00000009939)	krt98 (ENSSLUG00000009937)	ENSSLUG00000009915	krt98 (ENSSLUG00000009869)	krt94 (ENSSLUG00000009847)	SMAP1 (ENSSLUG00000009833)	cenpk (ENSSLUG00000009823)	lbx1b (ENSSLUG00000009812)	slc2a15b (ENSSLUG00000009795)
Channel bull blenny	MODERN SPECIES		ENSCGOG00000002317	MAFG (ENSCGOG00000002319)	ENSCGOG00000002322	ENSCGOG00000002369	aspscr1 (ENSCGOG00000002377)	NOTUM (ENSCGOG00000002389)	TMC6 (ENSCGOG00000002418)	TMC8 (ENSCGOG00000002433)	syngr2b (ENSCGOG00000002442)	tk1 (ENSCGOG00000002445)	afmid (ENSCGOG00000002460)	cant1b (ENSCGOG00000002471)	ENSCGOG00000002474 ##24	si:dkey-93h22.8 (ENSCGOG00000002491) #19	ldb1b (ENSCGOG00000002517) #20	armh3 (ENSCGOG00000003464) #22	KCNIP2 (ENSCGOG00000003983) #23	jupa (ENSCGOG00000004237)	ENSCGOG00000007811	ENSCGOG00000007818	krt99 (ENSCGOG00000007820)	krt15 (ENSCGOG00000007877)	krt98 (ENSCGOG00000007897)	krt94 (ENSCGOG00000007899)	SMAP1 (ENSCGOG00000007902)	cenpk (ENSCGOG00000007910)	lbx1b (ENSCGOG00000007915)	slc2a15b (ENSCGOG00000007928)	fgf8b (ENSCGOG00000008193) #26	dpcd (ENSCGOG00000008201) #28	poll (ENSCGOG00000008203) #29
Cottioidei	ANCESTRAL SPECIES	3	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Lumpfish	MODERN SPECIES		NOTUM (ENSCLMG00005014926)	ENSCLMG00005014933	ENSCLMG00005014935	tk1 (ENSCLMG00005014937)	ENSCLMG00005014938 ##24	cant1b (ENSCLMG00005014939)	afmid (ENSCLMG00005014941)	tk1 (ENSCLMG00005014944)	syngr2b (ENSCLMG00005014946)	ENSCLMG00005014947	ENSCLMG00005014948	cant1b (ENSCLMG00005014949)	ENSCLMG00005014950 ##24	si:dkey-93h22.8 (ENSCLMG00005014957) #19	ldb1b (ENSCLMG00005014963) #20	armh3 (ENSCLMG00005014981) #22	KCNIP2 (ENSCLMG00005015013) #23	jupa (ENSCLMG00005015158)	ENSCLMG00005015793	ENSCLMG00005016353	krt99 (ENSCLMG00005016355)	krt15 (ENSCLMG00005016356)	krt15 (ENSCLMG00005016364)	krt15 (ENSCLMG00005016371)	krt98 (ENSCLMG00005016373)	krt94 (ENSCLMG00005016389)	SMAP1 (ENSCLMG00005000004)	cenpk (ENSCLMG00005000017)	lbx1b (ENSCLMG00005000027)	slc2a15b (ENSCLMG00005000030)	fgf8b (ENSCLMG00005000044) #26
Stickleback	MODERN SPECIES	4	pi4k2b (ENSGACG00000018377)	htra3a (ENSGACG00000018376)	CPZ (ENSGACG00000018366)	hmx4 (ENSGACG00000018365)	adra2c (ENSGACG00000018364)	lrpap1 (ENSGACG00000018360)	DOK7 (ENSGACG00000018358)	rgs12b (ENSGACG00000018356)	htt (ENSGACG00000018347)	grk4 (ENSGACG00000018346)	cant1b (ENSGACG00000018345)	ENSGACG00000018341 ##24	ENSGACG00000018339 #19	ENSGACG00000018338	ldb1b (ENSGACG00000018336) #20	armh3 (ENSGACG00000018333) #22	KCNIP2 (ENSGACG00000018330) #23	jupa (ENSGACG00000018328)	ENSGACG00000018327	ENSGACG00000018326	krt99 (ENSGACG00000018321)	krt15 (ENSGACG00000018310)	krt98 (ENSGACG00000018303)	krt94 (ENSGACG00000018299)	SMAP1 (ENSGACG00000018297)	cenpk (ENSGACG00000018295)	lbx1b (ENSGACG00000018293)	slc2a15b (ENSGACG00000018278)	fgf8b (ENSGACG00000018276) #26	dpcd (ENSGACG00000018274) #28	poll (ENSGACG00000018272) #29
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	773									syngr2b (ENSLBEG00000023773)	tk1 (ENSLBEG00000023874)	afmid (ENSLBEG00000023920)	cant1b (ENSLBEG00000023965)	ENSLBEG00000023997 ##24	si:dkey-93h22.8 (ENSLBEG00000024075) #19	ldb1b (ENSLBEG00000024140) #20	armh3 (ENSLBEG00000024242) #22
Ballan wrasse	MODERN SPECIES	4641																ENSLBEG00000001976 #22
Tetraodontidae	ANCESTRAL SPECIES																	ENSGT00390000002554 #22
Fugu	MODERN SPECIES	8	ENSTRUG00000033186	pde6ha (ENSTRUG00000030117)	rbfox2 (ENSTRUG00000027524)	ENSTRUG00000025478	emp1 (ENSTRUG00000029776)	f8a (ENSTRUG00000003080)	si:ch211-243a20.3 (ENSTRUG00000021183)	grin2bb (ENSTRUG00000032790)	ubn2a (ENSTRUG00000032576)	ENSTRUG00000020415	ENSTRUG00000019884	ttc26 (ENSTRUG00000033273)	slc25a38b (ENSTRUG00000007084)	ENSTRUG00000025109	ldb1b (ENSTRUG00000026189) #20	armh3 (ENSTRUG00000000380) #22	ldb1b (ENSTRUG00000027693) #20	ENSTRUG00000032014	ENSTRUG00000027021	ttc26 (ENSTRUG00000031838)	UBE2O (ENSTRUG00000026213)	aanat1 (ENSTRUG00000017502)	RHBDF2 (ENSTRUG00000002805)	acox1 (ENSTRUG00000033106)	ten1 (ENSTRUG00000021534)	srp68 (ENSTRUG00000002749)	ENSTRUG00000027199	ENSTRUG00000025514	DDX5 (ENSTRUG00000002356)	ENSTRUG00000032773	ENSTRUG00000028957
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	26	ENSTNIG00000002340	stx1b (ENSTNIG00000002341)	ENSTNIG00000002342	ENSTNIG00000002345	kin (ENSTNIG00000002346)	mrpl28 (ENSTNIG00000002347)	ENSTNIG00000002349	pthlha (ENSTNIG00000000580)	ENSTNIG00000002440	ENSTNIG00000002352	tspan13a (ENSTNIG00000002353)	ENSTNIG00000002354	ENSTNIG00000002356	ENSTNIG00000002357	ENSTNIG00000002359	ENSTNIG00000002360 #22	ENSTNIG00000002362	ENSTNIG00000002363	rgma (ENSTNIG00000001545)	ENSTNIG00000002365	n4bp1 (ENSTNIG00000002366)	siah1 (ENSTNIG00000002367)	ENSTNIG00000002368	ENSTNIG00000002374	ENSTNIG00000002375	ENSTNIG00000002376	ENSTNIG00000002377	ENSTNIG00000002378	ENSTNIG00000002379	ENSTNIG00000002380 ##24	glt8d2 (ENSTNIG00000003326)
Tetraodon	MODERN SPECIES	26	evpla (ENSTNIG00000017513)	acox1 (ENSTNIG00000017514)	acox1 (ENSTNIG00000000932)	RHBDF2 (ENSTNIG00000017515)	aanat1 (ENSTNIG00000017516)	UBE2O (ENSTNIG00000017517)	SPHK1 (ENSTNIG00000017518)	cygb2 (ENSTNIG00000017519)	ENSTNIG00000017520	ENSTNIG00000000723	ubn2a (ENSTNIG00000017521)	ttc26 (ENSTNIG00000017522)	slc25a38b (ENSTNIG00000017523)	ENSTNIG00000017524 ##24	ldb1b (ENSTNIG00000004861) #20	armh3 (ENSTNIG00000004862) #22	jupa (ENSTNIG00000004863)	ENSTNIG00000004864	krt15 (ENSTNIG00000004865)	klf5l (ENSTNIG00000004691)	klf8 (ENSTNIG00000004690)	rbm41 (ENSTNIG00000004692)	cldn2 (ENSTNIG00000004693)	CLIP2 (ENSTNIG00000004694)	GTF2IRD1 (ENSTNIG00000004695)	dtx2 (ENSTNIG00000004696)	tmem132e (ENSTNIG00000010268)	rad51d (ENSTNIG00000010269)	lig3 (ENSTNIG00000010270)	DOC2B (ENSTNIG00000010271)	castor2 (ENSTNIG00000010272)
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Anabantaria	ANCESTRAL SPECIES	1	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Anabantoidei	ANCESTRAL SPECIES		ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Climbing perch	MODERN SPECIES		ENSATEG00000019897	aspscr1 (ENSATEG00000019927)	ENSATEG00000019940	TMC6 (ENSATEG00000019964)	TMC8 (ENSATEG00000020004)	TMC8 (ENSATEG00000028212)	ENSATEG00000027348	ENSATEG00000027769	syngr2b (ENSATEG00000029117)	tk1 (ENSATEG00000020084)	afmid (ENSATEG00000020116)	cant1b (ENSATEG00000020130)	ENSATEG00000020161 ##24	ENSATEG00000020218 #19	ldb1b (ENSATEG00000020230) #20	ARMH3 (ENSATEG00000020255) #22	KCNIP2 (ENSATEG00000020347) #23	jupa (ENSATEG00000020387)	ENSATEG00000020436	ENSATEG00000020511	krt99 (ENSATEG00000020521)	krt15 (ENSATEG00000020542)	krt98 (ENSATEG00000020567)	krt94 (ENSATEG00000020591)	ENSATEG00000020598	cenpk (ENSATEG00000020632)	lbx1b (ENSATEG00000020642)	slc2a15b (ENSATEG00000020655)	fgf8b (ENSATEG00000028269) #26	dpcd (ENSATEG00000020802) #28	poll (ENSATEG00000020832) #29
Siamese fighting fish	MODERN SPECIES		syngr2b (ENSBSLG00000001559)	TMC8 (ENSBSLG00000001548)	TMC6 (ENSBSLG00000001526)	NOTUM (ENSBSLG00000001513)	aspscr1 (ENSBSLG00000001504)	ENSBSLG00000001498	ENSBSLG00000001474	MAFG (ENSBSLG00000001443)	ENSBSLG00000001430	SIRT7 (ENSBSLG00000001364)	afmid (ENSBSLG00000001322)	cant1b (ENSBSLG00000001309)	ENSBSLG00000001281 ##24	si:dkey-93h22.8 (ENSBSLG00000001254) #19	ldb1b (ENSBSLG00000001219) #20	armh3 (ENSBSLG00000000791) #22	KCNIP2 (ENSBSLG00000000751) #23	jupa (ENSBSLG00000000630)	ENSBSLG00000000502	ENSBSLG00000000461	krt99 (ENSBSLG00000000440)	krt98 (ENSBSLG00000000226)	krt15 (ENSBSLG00000000117)	SMAP1 (ENSBSLG00000006854)	cenpk (ENSBSLG00000006834)	lbx1b (ENSBSLG00000006829)	slc2a15b (ENSBSLG00000006540)	fgf8b (ENSBSLG00000006445) #26	dpcd (ENSBSLG00000006378) #28	poll (ENSBSLG00000006326) #29	wbp1lb (ENSBSLG00000006278)
Zig-zag eel	MODERN SPECIES		MAFG (ENSMAMG00000011427)	ENSMAMG00000011403	MYADML2 (ENSMAMG00000026044)	aspscr1 (ENSMAMG00000011385)	ENSMAMG00000011354	TMC6 (ENSMAMG00000011348)	TMC8 (ENSMAMG00000011290)	ENSMAMG00000026199	syngr2b (ENSMAMG00000011259)	tk1 (ENSMAMG00000011249)	afmid (ENSMAMG00000011213)	cant1b (ENSMAMG00000024398)	ENSMAMG00000011193 ##24	si:dkey-93h22.8 (ENSMAMG00000011169) #19	ldb1b (ENSMAMG00000011142) #20	ARMH3 (ENSMAMG00000011040) #22	KCNIP2 (ENSMAMG00000011011) #23	jupa (ENSMAMG00000010941)	ENSMAMG00000010892	ENSMAMG00000010885	krt99 (ENSMAMG00000010847)	krt15 (ENSMAMG00000010835)	krt98 (ENSMAMG00000010267)	krt94 (ENSMAMG00000010209)	ENSMAMG00000010206	cenpk (ENSMAMG00000010189)	lbx1b (ENSMAMG00000010182)	fgf8b (ENSMAMG00000024638) #26	dpcd (ENSMAMG00000009826) #28	poll (ENSMAMG00000009780) #29	wbp1lb (ENSMAMG00000009771)
Carangaria	ANCESTRAL SPECIES		ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Carangaria_A	ANCESTRAL SPECIES	24	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Seriola	ANCESTRAL SPECIES	11	ENSGT00390000004090	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00940000158515 #29
Greater amberjack	MODERN SPECIES	84	SIRT7 (ENSSDUG00000001789)	MAFG (ENSSDUG00000001779)	ENSSDUG00000001749	ENSSDUG00000001716	aspscr1 (ENSSDUG00000001678)	NOTUM (ENSSDUG00000001646)	TMC6 (ENSSDUG00000001594)	TMC8 (ENSSDUG00000001533)	syngr2b (ENSSDUG00000001485)	tk1 (ENSSDUG00000001455)	afmid (ENSSDUG00000001414)	cant1b (ENSSDUG00000001389)	ENSSDUG00000001303 ##24	si:dkey-93h22.8 (ENSSDUG00000001268) #19	ldb1b (ENSSDUG00000001247) #20	armh3 (ENSSDUG00000001167) #22	KCNIP2 (ENSSDUG00000001121) #23	jupa (ENSSDUG00000001059)	ENSSDUG00000000985	ENSSDUG00000000957	krt99 (ENSSDUG00000000457)	krt15 (ENSSDUG00000000355)	krt98 (ENSSDUG00000000282)	krt94 (ENSSDUG00000000267)	SMAP1 (ENSSDUG00000000217)	cenpk (ENSSDUG00000000210)	lbx1b (ENSSDUG00000000191)	slc2a15b (ENSSDUG00000000101)	fgf8b (ENSSDUG00000021510) #26	dpcd (ENSSDUG00000021500) #28	poll (ENSSDUG00000021485) #29
Yellowtail amberjack	MODERN SPECIES	3041	ENSSLDG00000012375	MAFG (ENSSLDG00000012357)	ENSSLDG00000012331	ENSSLDG00000012314	aspscr1 (ENSSLDG00000012283)	NOTUM (ENSSLDG00000012241)	TMC6 (ENSSLDG00000012223)	TMC8 (ENSSLDG00000012181)	syngr2b (ENSSLDG00000012174)	tk1 (ENSSLDG00000012141)	afmid (ENSSLDG00000012120)	cant1b (ENSSLDG00000012095)	ENSSLDG00000012042 ##24	si:dkey-93h22.8 (ENSSLDG00000012010) #19	ldb1b (ENSSLDG00000011963) #20	armh3 (ENSSLDG00000011864) #22	KCNIP2 (ENSSLDG00000011824) #23	jupa (ENSSLDG00000011768)	ENSSLDG00000011569	ENSSLDG00000011518	krt99 (ENSSLDG00000011125)	krt15 (ENSSLDG00000011011)	krt98 (ENSSLDG00000010975)	krt94 (ENSSLDG00000010940)	SMAP1 (ENSSLDG00000010906)	cenpk (ENSSLDG00000010881)	lbx1b (ENSSLDG00000010867)	slc2a15b (ENSSLDG00000010809)	fgf8b (ENSSLDG00000010661) #26	dpcd (ENSSLDG00000010604) #28	poll (ENSSLDG00000010575) #29
Barramundi perch	MODERN SPECIES	123	MAFG (ENSLCAG00010005385)	ENSLCAG00010005350	ENSLCAG00010005338	CACNA1H (ENSLCAG00010005311)	aspscr1 (ENSLCAG00010005295)	NOTUM (ENSLCAG00010005289)	TMC6 (ENSLCAG00010005217)	ENSLCAG00010005188	ENSLCAG00010005174	syngr2b (ENSLCAG00010005173)	tk1 (ENSLCAG00010005161)	afmid (ENSLCAG00010005154)	cant1b (ENSLCAG00010005148)	ENSLCAG00010005143 ##24	ldb1b (ENSLCAG00010004959) #20	armh3 (ENSLCAG00010004845) #22	KCNIP2 (ENSLCAG00010004262) #23	jupa (ENSLCAG00010004132)	ENSLCAG00010004050	ENSLCAG00010004025	krt99 (ENSLCAG00010004003)	krt15 (ENSLCAG00010003939)	krt98 (ENSLCAG00010003920)	krt94 (ENSLCAG00010003907)	SMAP1 (ENSLCAG00010003899)	cenpk (ENSLCAG00010003895)	lbx1b (ENSLCAG00010003893)	slc2a15b (ENSLCAG00010003888)	fgf8b (ENSLCAG00010003879) #26	dpcd (ENSLCAG00010003873) #28	poll (ENSLCAG00010003869) #29
Pleuronectoidei	ANCESTRAL SPECIES	22	ENSGT00940000159703	ENSGT00940000160070.b.c.b	ENSGT00950000183044.a.a.a.b	ENSGT00950000182933.A.a.b	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #26	ENSGT00390000014031 #28	ENSGT00950000183109.c.a.a.a.b
Turbot	MODERN SPECIES	20	ENSSMAG00000022806	MAFG (ENSSMAG00000028574)	ENSSMAG00000005576	ENSSMAG00000005606	aspscr1 (ENSSMAG00000005618)	ENSSMAG00000005689	TMC6 (ENSSMAG00000005712)	TMC8 (ENSSMAG00000005735)	ENSSMAG00000024985	syngr2b (ENSSMAG00000005745)	tk1 (ENSSMAG00000005773)	afmid (ENSSMAG00000005807)	cant1b (ENSSMAG00000005832)	ENSSMAG00000005860 ##24	ldb1b (ENSSMAG00000005937) #20	ENSSMAG00000006048 #22	KCNIP2 (ENSSMAG00000006111) #23	jupa (ENSSMAG00000006134)	ENSSMAG00000006168	ENSSMAG00000006186	krt99 (ENSSMAG00000006200)	krt15 (ENSSMAG00000006227)	krt98 (ENSSMAG00000006243)	krt94 (ENSSMAG00000006254)	ENSSMAG00000006263	cenpk (ENSSMAG00000006290)	lbx1b (ENSSMAG00000036098)	poll (ENSSMAG00000006388) #29	slc2a15b (ENSSMAG00000006312)	fgf8b (ENSSMAG00000006337) #26	dpcd (ENSSMAG00000006362) #28
Tongue sole	MODERN SPECIES	19	PLA2G12B (ENSCSEG00000016322)	scrn2 (ENSCSEG00000016312)	sp6 (ENSCSEG00000016307)	cwc25 (ENSCSEG00000016305)	psmb3 (ENSCSEG00000016289)	PIP4K2B (ENSCSEG00000016276)	PCGF2 (ENSCSEG00000016264)	ENSCSEG00000016258	ENSCSEG00000016247	aspscr1 (ENSCSEG00000016235)	ENSCSEG00000016228	ENSCSEG00000016224	tk1 (ENSCSEG00000016219)	afmid (ENSCSEG00000016202)	ldb1b (ENSCSEG00000016177) #20	armh3 (ENSCSEG00000016153) #22	jupa (ENSCSEG00000016113)	ENSCSEG00000016091	krt15 (ENSCSEG00000016076)	krt98 (ENSCSEG00000016068)	krt94 (ENSCSEG00000016058)	ENSCSEG00000016041	cenpk (ENSCSEG00000016029)	lbx1b (ENSCSEG00000016019)	slc2a15b (ENSCSEG00000016002)	asah1b (ENSCSEG00000015956)	frg1 (ENSCSEG00000015950)	fat1a (ENSCSEG00000015927)	mtnr1aa (ENSCSEG00000015868)	cyp4v2a (ENSCSEG00000015855)	ENSCSEG00000015848
Pinecone sodierfish	MODERN SPECIES		MAFG (ENSMMDG00005002644)	ENSMMDG00005002703	ENSMMDG00005002928	aspscr1 (ENSMMDG00005002941)	NOTUM (ENSMMDG00005002962)	TMC6 (ENSMMDG00005002968)	TMC8 (ENSMMDG00005002983)	ENSMMDG00005003001	syngr2b (ENSMMDG00005003010)	tk1 (ENSMMDG00005003015)	afmid (ENSMMDG00005003026)	cant1b (ENSMMDG00005003053)	ENSMMDG00005003059 ##24	ENSMMDG00005003071 #19	ldb1b (ENSMMDG00005003141) #20	armh3 (ENSMMDG00005004934) #22	KCNIP2 (ENSMMDG00005004975) #23	jupa (ENSMMDG00005005176)	ENSMMDG00005007084	ENSMMDG00005007443	krt99 (ENSMMDG00005007454)	krt15 (ENSMMDG00005007456)	krt98 (ENSMMDG00005007462)	krt94 (ENSMMDG00005007671)	SMAP1 (ENSMMDG00005007676)	cenpk (ENSMMDG00005007682)	lbx1b (ENSMMDG00005007684)	slc2a15b (ENSMMDG00005007691)	fgf8b (ENSMMDG00005007695) #26	dpcd (ENSMMDG00005007698) #28	poll (ENSMMDG00005007701) #29
Cod	MODERN SPECIES	16	ENSGMOG00000032471	ENSGMOG00000028303	ENSGMOG00000033452	ENSGMOG00000012279	ENSGMOG00000033147	ENSGMOG00000004570	ENSGMOG00000027881	ENSGMOG00000033099	ENSGMOG00000025929	ENSGMOG00000033307	CALHM1 (ENSGMOG00000033306)	zgc:175214 (ENSGMOG00000027235)	pdcd11 (ENSGMOG00000004186)	taf5 (ENSGMOG00000004274)	LDB1 (ENSGMOG00000019523) #20	ENSGMOG00000019516 #22	KCNIP2 (ENSGMOG00000019514) #23	jupa (ENSGMOG00000019511)	ENSGMOG00000019513	ENSGMOG00000030774	ENSGMOG00000037060	ENSGMOG00000031187	krt98 (ENSGMOG00000012962)	krt94 (ENSGMOG00000014102)	ENSGMOG00000025967	ENSGMOG00000000026	ENSGMOG00000010976	ENSGMOG00000035670	ENSGMOG00000016213	ENSGMOG00000015766	ENSGMOG00000015737
Protacanthopterygii	ANCESTRAL SPECIES	67	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00940000161847.b.a.e.a.b.b	ENSGT00950000183127.c.b.d.a.a.a	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b #23	ENSGT00390000002223	ENSGT00390000008454
Northern pike	MODERN SPECIES	8	ENSELUG00000029936	syngr2b (ENSELUG00000018623)	tk1 (ENSELUG00000018641)	afmid (ENSELUG00000018695)	cant1b (ENSELUG00000018726)	ENSELUG00000018771 ##24	ENSELUG00000018785 #19	ENSELUG00000018858	ENSELUG00000030589	ENSELUG00000018884	ENSELUG00000026073	ENSELUG00000018834	ENSELUG00000018940	ENSELUG00000018909	ldb1b (ENSELUG00000018961) #20	armh3 (ENSELUG00000001513) #22	KCNIP2 (ENSELUG00000019136) #23	ENSELUG00000030337	ENSELUG00000012879	ENSELUG00000019197	ENSELUG00000019171	ENSELUG00000030960	ENSELUG00000033837	ENSELUG00000027821	ENSELUG00000019237	ENSELUG00000034028	ENSELUG00000027831	ENSELUG00000028000	ENSELUG00000031512	ENSELUG00000025833	ENSELUG00000032732
Salmoninae	ANCESTRAL SPECIES	14	ENSGT00390000015892.a.c	ENSGT01050000244894.b.b.d.a.f.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093.d.a	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00950000183127.c.b.d.a.a.a.e.a	ENSGT00940000161847.b.a.e.a.b.b	ENSGT00950000183127.c.b.d.a.a.a.f	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b.e #23	ENSGT00970000194718.b.b.a.b.b	ENSGT00940000157331.b.a	ENSGT00940000157322.b.b	ENSGT00940000162611.a.a.a.b	ENSGT00940000162611.b	ENSGT00730000111173.h	ENSGT00530000063604.A.d.a	ENSGT00940000157525.a.d	ENSGT00950000183082.b.b.a.b.d.a.a	ENSGT00940000157556.a.a	ENSGT00940000157049.d.c	ENSGT01100000263540.B.c	ENSGT00390000007125.a.d	ENSGT00940000162476.d
Huchen	DUPLICATION
Huchen	DUPLICATION
Huchen	DUPLICATION
Huchen	MODERN SPECIES	7164																armh3 (ENSHHUG00000015048) #22
Huchen	MODERN SPECIES	7999																ENSHHUG00000022644 #22
Huchen	MODERN SPECIES	7447																ENSHHUG00000002071 #22	ENSHHUG00000002078 #22
Huchen	MODERN SPECIES	7447															ENSHHUG00000002071 #22	ENSHHUG00000002078 #22
Salmoninae_a	ANCESTRAL SPECIES	33	ENSGT00390000015892.a.c	ENSGT01050000244894.b.b.d.a.f.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093.d.a	ENSGT00390000012872.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00950000183127.c.b.d.a.a.a.e.a	ENSGT00940000161847.b.a.e.a.b.b	ENSGT00950000183127.c.b.d.a.a.a.f	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b.e #23	ENSGT00970000194718.b.b.a.b.b	ENSGT01010000222294.c.b.b.b.c.a.a.a.b	ENSGT00940000157331.b.a	ENSGT00940000157322.b.b	ENSGT00940000162611.a.a.a.b	ENSGT00940000162611.b	ENSGT00730000111173.h	ENSGT00530000063604.A.d.a	ENSGT00940000157525.a.d	ENSGT00950000183082.b.b.a.b.d.a.a	ENSGT00940000157556.a.a	ENSGT00940000157049.d.c	ENSGT01100000263540.B.c	ENSGT00390000007125.a.d
Salmo	ANCESTRAL SPECIES	109	ENSGT00940000156853.p.a.b	ENSGT00940000156853.o	ENSGT00390000015892.a.c	ENSGT01050000244894.b.b.d.a.f.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B.d	ENSGT00530000069282.B.c	ENSGT00950000182935.B.a.c	ENSGT00390000011309.v	ENSGT00390000011093.d.b.b.a	ENSGT00950000183137.a.l.c #19	ENSGT00940000161847.b.a.e.a.b.b	ENSGT00950000183127.c.b.d.a.a.a.f.a	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b.f.b.b #23
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	11	ENSSSAG00000008602	ENSSSAG00000008650	ENSSSAG00000118003	ENSSSAG00000000409	TMC6 (ENSSSAG00000082590)	tmc8 (ENSSSAG00000085350)	ENSSSAG00000116234	ENSSSAG00000100606	ENSSSAG00000008686	tk1 (ENSSSAG00000001109)	afmid (ENSSSAG00000001106)	cant1b (ENSSSAG00000001450)	si:dkey-93h22.8 (ENSSSAG00000000432) #19	ENSSSAG00000061426	LDB1 (ENSSSAG00000079983) #20	armh3 (ENSSSAG00000093253) #22	KCNIP2 (ENSSSAG00000087854) #23	ENSSSAG00000113294	ENSSSAG00000001924	ENSSSAG00000010284	ENSSSAG00000118544	ENSSSAG00000122295	ENSSSAG00000092058	ENSSSAG00000114833	ENSSSAG00000119088	ENSSSAG00000098411	ENSSSAG00000120262	ENSSSAG00000082855	ENSSSAG00000113713	ENSSSAG00000001463	ENSSSAG00000001902
Atlantic salmon	MODERN SPECIES	3	ENSSSAG00000083811	TMC6 (ENSSSAG00000096361)	TMC8 (ENSSSAG00000001112)	ENSSSAG00000090525	ENSSSAG00000095018	ENSSSAG00000094473	tk1 (ENSSSAG00000096487)	afmid (ENSSSAG00000092740)	ENSSSAG00000101100 #20	ENSSSAG00000008255 ##24	ENSSSAG00000008769 #19	ENSSSAG00000085531	ENSSSAG00000008825	ENSSSAG00000087614	ENSSSAG00000109291	ARMH3 (ENSSSAG00000009412) #22	ENSSSAG00000001426 #23	ENSSSAG00000095336	ENSSSAG00000103983 #23	ENSSSAG00000113084	ENSSSAG00000118680	ENSSSAG00000112597	ENSSSAG00000101021	ENSSSAG00000101980	ENSSSAG00000087263	ENSSSAG00000001073	ENSSSAG00000084650	ENSSSAG00000085811	CNNM1 (ENSSSAG00000106882)	GOT1 (ENSSSAG00000001473)	nkx23 (ENSSSAG00000008986)
River trout	MODERN SPECIES	671															ENSSTUG00000030684	armh3 (ENSSTUG00000030195) #22
Oncorhynchus	ANCESTRAL SPECIES	78			ENSGT00950000183044.a.a.a.b.e.a	ENSGT00950000182933.A.a.b	ENSGT00940000156853.o	ENSGT00390000015892.a.c	ENSGT01050000244894.b.b.d.a.f.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093.d.b.a	ENSGT00390000012872.b.e.a	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b.e #23	ENSGT00970000194718.b.b.a.b.b	ENSGT01010000222294.c.b.b.b.c.a.a.a.b	ENSGT00940000157331.b.a	ENSGT00940000157322.b.b	ENSGT00940000162611.a.a.a.b	ENSGT00940000162611.b	ENSGT00940000162611.a.a.a.a	ENSGT00730000111173.h	ENSGT00530000063604.A.d.a	ENSGT00940000157525.a.d	ENSGT00950000183082.b.b.a.b.d.a.a	ENSGT00940000157556.a.a	ENSGT00940000157049.d.c	ENSGT01100000263540.B.c
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	8	ENSOMYG00000049986	TMC8 (ENSOMYG00000050653)	ENSOMYG00000058212	ENSOMYG00000070824	syngr2b (ENSOMYG00000007365)	tk1 (ENSOMYG00000007441)	ENSOMYG00000075825	cant1b (ENSOMYG00000032754)	ENSOMYG00000055952 ##24	ENSOMYG00000058282 #19	ENSOMYG00000049938	ENSOMYG00000033152	ENSOMYG00000075139	ldb1b (ENSOMYG00000050962) #20	ENSOMYG00000061320	armh3 (ENSOMYG00000077014) #22	ENSOMYG00000075143	KCNIP2 (ENSOMYG00000048087) #23	ENSOMYG00000055886	ENSOMYG00000009654	ENSOMYG00000051236	ENSOMYG00000054778	ENSOMYG00000050506	ENSOMYG00000008965	ENSOMYG00000072943	ENSOMYG00000076110	ENSOMYG00000068272	ENSOMYG00000060200	ENSOMYG00000051447	ENSOMYG00000061892	ENSOMYG00000055249
Rainbow trout	MODERN SPECIES	4	ENSOMYG00000004552	ENSOMYG00000004632	ENSOMYG00000068777	ENSOMYG00000071673	akap8l (ENSOMYG00000052483)	ENSOMYG00000051164	ENSOMYG00000061151	ENSOMYG00000048846	ENSOMYG00000051942	ENSOMYG00000048312	ENSOMYG00000059563	ENSOMYG00000003277	ENSOMYG00000061661	ENSOMYG00000023197 #20	ENSOMYG00000061283	armh3 (ENSOMYG00000055829) #22	ENSOMYG00000075129 #23	ENSOMYG00000058057	ENSOMYG00000064079	ENSOMYG00000058375	ENSOMYG00000072319	ENSOMYG00000032612	ENSOMYG00000050183	ENSOMYG00000064780	ENSOMYG00000061918	ENSOMYG00000049087	ENSOMYG00000076614	slit1b (ENSOMYG00000006609)	ENSOMYG00000006387	ENSOMYG00000006456	ENSOMYG00000049220
Oncorhynchus_a	ANCESTRAL SPECIES	228									ENSGT00390000011309.y	ENSGT00390000011093.d.a	ENSGT00390000012872.b.e.b	ENSGT00390000007726.a.b ##24	ENSGT00950000183137.a.l #19	ENSGT00950000183127.c.b.d.a.a.a.e.a	ENSGT00390000005639.a.b.d.b #20	ENSGT00390000002554 #22	ENSGT00940000157798.b.e #23	ENSGT00970000194718.b.b.a.b.b
Coho salmon	MODERN SPECIES	1232												ENSOKIG00005028504 #19	ENSOKIG00005028589	ENSOKIG00005029682	LDB1 (ENSOKIG00005029705) #20	ARMH3 (ENSOKIG00005030163) #22	KCNIP2 (ENSOKIG00005030186) #23	ENSOKIG00005030292	ENSOKIG00005030409	ENSOKIG00005030422	ENSOKIG00005030438	ENSOKIG00005030453	ENSOKIG00005030495	ENSOKIG00005030549
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	181	ENSGT00980000198917	ENSGT00940000167489	ENSGT00390000003070.a.a.p	ENSGT00940000160638	ENSGT00390000017548.b.b	ENSGT00950000182990.b	ENSGT00940000161116.w.a.a	ENSGT00390000004428.a.a	ENSGT00390000003595	ENSGT01090000260051.a	ENSGT01080000257365.a.c	ENSGT01030000234586.B.a.a.a	ENSGT00940000157836.b	ENSGT00390000005639.a.b.b.a #20	ENSGT00390000001546.f #21	ENSGT00390000002554.`b #22	ENSGT00940000157798.b.j #23	ENSGT00940000157331.b.a	ENSGT00940000157322.b.a.a
P. kingsleyae	MODERN SPECIES	18	NEU3 (ENSPKIG00000014067)	ENSPKIG00000014094	NEU3 (ENSPKIG00000014131)	USH1G (ENSPKIG00000014218)	FADS6 (ENSPKIG00000014246)	ENSPKIG00000014273	zgc:112148 (ENSPKIG00000014299)	ENSPKIG00000014313	exoc7 (ENSPKIG00000014329)	galr2a (ENSPKIG00000014369)	KCNJ16 (ENSPKIG00000014415)	kcnj2a (ENSPKIG00000014425)	map2k6 (ENSPKIG00000014459)	ldb1a (ENSPKIG00000014537) #20	HPS6 (ENSPKIG00000014625) #21	armh3 (ENSPKIG00000014676) #22	KCNIP2 (ENSPKIG00000014808) #23	ENSPKIG00000014871	ARHGAP19 (ENSPKIG00000014888)	slit1a (ENSPKIG00000014953)	ENSPKIG00000015096	ENSPKIG00000015112	hoga1 (ENSPKIG00000015141)	CNNM1 (ENSPKIG00000015185)	got1 (ENSPKIG00000015231)	ENSPKIG00000015279	ENTPD7 (ENSPKIG00000015335)	ENSPKIG00000015431	atpv0e2 (ENSPKIG00000015481)	zgc:123010 (ENSPKIG00000015521)	LOXL4 (ENSPKIG00000015645)
Asian bonytongue	MODERN SPECIES	18	HID1 (ENSSFOG00015004335)	ENSSFOG00015004420	ENSSFOG00015004429	ENSSFOG00015024651	USH1G (ENSSFOG00015004437)	FADS6 (ENSSFOG00015004458)	ENSSFOG00015004483	zgc:112148 (ENSSFOG00015004496)	exoc7 (ENSSFOG00015004564)	galr2a (ENSSFOG00015004780)	KCNJ16 (ENSSFOG00015004794)	kcnj2a (ENSSFOG00015004808)	map2k6 (ENSSFOG00015026739)	LDB1 (ENSSFOG00015026347) #20	HPS6 (ENSSFOG00015004868) #21	armh3 (ENSSFOG00015004890) #22	KCNIP2 (ENSSFOG00015005014) #23	ARHGAP19 (ENSSFOG00015005054)	SLIT1 (ENSSFOG00015005079)	ENSSFOG00015005187	ENSSFOG00015030867	ENSSFOG00015027052	hoga1 (ENSSFOG00015005206)	CNNM1 (ENSSFOG00015005249)	APOBEC2 (ENSSFOG00015022920)	guca1d (ENSSFOG00015005454)	UPK1B (ENSSFOG00015005472)	eif4e1b (ENSSFOG00015005488)	nars2 (ENSSFOG00015005504)	gjd1a (ENSSFOG00015028657)	b4galt4 (ENSSFOG00015005565)
Osteoglossiformes	ANCESTRAL SPECIES	177											ENSGT00940000158796 #25	ENSGT00390000007726.a.a.i #24	ENSGT00390000005639.a.b.b.b #20	ENSGT00530000063586.a	ENSGT00390000001546.e #21	ENSGT00390000002554.ab #22	ENSGT00940000157798.b.i.a #23	ENSGT00390000002223	ENSGT00390000008454	ENSGT00940000164383	ENSGT01100000263518.A.b	ENSGT00940000157322.b.a.b	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00530000063604.A	ENSGT00940000157525.a	ENSGT00950000183082.b.b.a.a	ENSGT00940000157556.a.a.a	ENSGT00940000157049.b	ENSGT01100000263540.B.c
Asian bonytongue	MODERN SPECIES	23	lamtor3 (ENSSFOG00015030304)	dapp1 (ENSSFOG00015013233)	atp10d (ENSSFOG00015013278)	commd8 (ENSSFOG00015013369)	ENSSFOG00015032686	selenou1a (ENSSFOG00015013404)	ENSSFOG00015013415	ENSSFOG00015013450	ENSSFOG00015013504 #36	trim8a (ENSSFOG00015013630)	npm3 (ENSSFOG00015013651) #25	oga (ENSSFOG00015013836) #24	LDB1 (ENSSFOG00015029958) #20	ENSSFOG00015015273	HPS6 (ENSSFOG00015026018) #21	ARMH3 (ENSSFOG00015015360) #22	ENSSFOG00015032288	KCNIP2 (ENSSFOG00015015460) #23	cox15 (ENSSFOG00015015485)	cutc (ENSSFOG00015025714)	ENSSFOG00015015558	ENSSFOG00015015619	slit1a (ENSSFOG00015015642)	ENSSFOG00015015746	ENSSFOG00015031827	ENSSFOG00015029523	ENSSFOG00015015789	hps1 (ENSSFOG00015015808)	HPSE2 (ENSSFOG00015015866)	got1 (ENSSFOG00015015891)	ENSSFOG00015032867
Spotted gar	MODERN SPECIES	671	twnk (ENSLOCG00000012623)	mrpl43 (ENSLOCG00000012629)	SEMA4G (ENSLOCG00000012636)	ENSLOCG00000012649	ENSLOCG00000018257	mfsd13a (ENSLOCG00000012657) #8	ACTR1A (ENSLOCG00000012666) #7	sufu (ENSLOCG00000012672)	trim8a (ENSLOCG00000012685)	ARL3 (ENSLOCG00000012693)	oga (ENSLOCG00000012705) #24	ENSLOCG00000012714 #19	ldb1a (ENSLOCG00000012717) #20	ENSLOCG00000012727	HPS6 (ENSLOCG00000012743) #21	armh3 (ENSLOCG00000012746) #22	KCNIP2 (ENSLOCG00000012753) #23	cox15 (ENSLOCG00000012765)	cutc (ENSLOCG00000012769)	ENSLOCG00000012775	ENSLOCG00000012799	ARHGAP19 (ENSLOCG00000012802)	slit1a (ENSLOCG00000012809)	ENSLOCG00000018258	ENSLOCG00000012823	morn4 (ENSLOCG00000012827)	hoga1 (ENSLOCG00000012833)	ANKRD2 (ENSLOCG00000012838)	NDST2 (ENSLOCG00000012849)	zswim8 (ENSLOCG00000012853)	ENSLOCG00000012863
Reedfish	MODERN SPECIES	10	ENSECRG00000002914	SEMA4G (ENSECRG00000002903)	SLF2 (ENSECRG00000002883)	mfsd13a (ENSECRG00000002870) #8	actr1b (ENSECRG00000002860) #7	sufu (ENSECRG00000002841)	trim8a (ENSECRG00000002832)	arl3b (ENSECRG00000002816)	sfxn2 (ENSECRG00000002800) ##34	npm3 (ENSECRG00000002793) #25	oga (ENSECRG00000002767) #24	ENSECRG00000002734 #19	ldb1a (ENSECRG00000002707) #20	HPS6 (ENSECRG00000002693) #21	ENSECRG00000002684	armh3 (ENSECRG00000002599) #22	KCNIP2 (ENSECRG00000002246) #23	cox15 (ENSECRG00000002187)	cutc (ENSECRG00000002156)	ENSECRG00000002141	ENSECRG00000002106	ENSECRG00000002079	ARHGAP19 (ENSECRG00000002058)	slit1a (ENSECRG00000002016)	ENSECRG00000001996	ENSECRG00000001987	ENSECRG00000001980	morn4 (ENSECRG00000001966)	hoga1 (ENSECRG00000001937)	ANKRD2 (ENSECRG00000001895)	st3gal7 (ENSECRG00000001866)
Elephant shark	MODERN SPECIES	2251																armh3 (ENSCMIG00000003738) #22
Cyclostomata	ANCESTRAL SPECIES	843															ENSGT00390000001546 #21	ENSGT00390000002554 #22
Lamprey	MODERN SPECIES	91													ENSPMAG00000003240	psma6a (ENSPMAG00000003249)	PRADC1 (ENSPMAG00000003286)	armh3 (ENSPMAG00000003291) #22	ENSPMAG00000010076	ENSPMAG00000010078	ENSPMAG00000010079	ENSPMAG00000010081	ENSPMAG00000010236	ENSPMAG00000003324	ENSPMAG00000010238	ENSPMAG00000010240	ENSPMAG00000010242	CRYGS (ENSPMAG00000003367)	ENSPMAG00000003375	ENSPMAG00000003378	ENSPMAG00000003393	isca2 (ENSPMAG00000003402)	glrx5 (ENSPMAG00000003413)
Hagfish	MODERN SPECIES	1068	ralbp1 (ENSEBUG00000002302)	ENSEBUG00000009890	ENSEBUG00000017023	ENSEBUG00000010142	ENSEBUG00000014876	ENSEBUG00000014148	ENSEBUG00000000621	cyfip2 (ENSEBUG00000006715)	cyfip2 (ENSEBUG00000014461)	Ptk (ENSEBUG00000011015)	ENSEBUG00000007137	ENSEBUG00000011610	rnf145b (ENSEBUG00000013018)	glrx3 (ENSEBUG00000007312)	ENSEBUG00000016203 #21	armh3 (ENSEBUG00000005669) #22	KCNIP3 (ENSEBUG00000004789)	ENSEBUG00000003892	ENSEBUG00000001095	ENSEBUG00000001241	ENSEBUG00000007994
Ciona	ANCESTRAL SPECIES																	ENSGT00390000002554 #22
Ciona savignyi	MODERN SPECIES	162	ENSCSAVG00000011784	ENSCSAVG00000011783	ENSCSAVG00000011782	ENSCSAVG00000011781	ENSCSAVG00000011780	ENSCSAVG00000011778	ENSCSAVG00000011777	ENSCSAVG00000011776	ENSCSAVG00000011775	ENSCSAVG00000011774	ENSCSAVG00000011768	ENSCSAVG00000011760	ENSCSAVG00000011759	ENSCSAVG00000011757	ENSCSAVG00000011754	ENSCSAVG00000011753 #22	ENSCSAVG00000011752	ENSCSAVG00000011748	ENSCSAVG00000011747	ENSCSAVG00000011746	ENSCSAVG00000011745	ENSCSAVG00000011744	ENSCSAVG00000011743	ENSCSAVG00000011742	ENSCSAVG00000011709	ENSCSAVG00000011704	ENSCSAVG00000011703	ENSCSAVG00000011702
Ciona intestinalis	MODERN SPECIES	13	ENSCING00000006652	ENSCING00000012860	ENSCING00000019589	ENSCING00000012865	ENSCING00000006637	ENSCING00000015173	ENSCING00000006636	ENSCING00000006632	ENSCING00000006630	ENSCING00000024775	ENSCING00000006629	ENSCING00000006628	ENSCING00000023104	ENSCING00000006625	ENSCING00000012867	ENSCING00000020172 #22	ENSCING00000012869	ENSCING00000007111	ENSCING00000012870	ENSCING00000006622	ci-vp-r (ENSCING00000006620)	ENSCING00000006618	ciic3 (ENSCING00000006612)	ENSCING00000006611	ENSCING00000006610	ENSCING00000019302	ENSCING00000006604	ENSCING00000020810	ENSCING00000023589	ENSCING00000006595	ENSCING00000012877