Sarcopterygii	ANCESTRAL SPECIES	35															ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00940000176149	ENSGT00940000167689	ENSGT00940000154823	ENSGT00940000156014	ENSGT00940000165416	ENSGT00940000159212.a	ENSGT00510000047059	ENSGT00390000008135	ENSGT01020000230354.B.b.a.a	ENSGT00530000064130	ENSGT00950000183018.a.d	ENSGT00390000003115	ENSGT00940000156339	ENSGT00390000008983.b	ENSGT00940000162897
Tetrapoda	ANCESTRAL SPECIES	409															ENSGT00390000009061 #21	ENSGT00390000017214 #22
Amniota	ANCESTRAL SPECIES		ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT00950000185226	ENSGT00940000167196	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000166029	ENSGT01030000234590.A.a.b	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00940000153259.a.a.a	ENSGT00940000154336 #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35
Mammalia	ANCESTRAL SPECIES	7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT00950000185226	ENSGT00940000167196	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000164076.a.b	ENSGT00940000161675	ENSGT00390000009776	ENSGT01030000234590.A.a.b	ENSGT00940000155511	ENSGT00950000183022.a.a.a	ENSGT01100000263557.B	ENSGT00940000162537	ENSGT00940000153313.A	ENSGT00510000048154	ENSGT00940000158872	ENSGT00940000156517	ENSGT00390000001015
Theria	ANCESTRAL SPECIES	15	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT00950000185226	ENSGT00940000167196	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT01030000234592.B	ENSGT00950000183168.A
Eutheria	ANCESTRAL SPECIES	3	ENSGT00950000185226	ENSGT00940000167196	ENSGT01030000234598.b.a.b.k.a #12	ENSGT00940000160005.A	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162741.i.b	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36	ENSGT01030000234592.B
Boreoeutheria	ANCESTRAL SPECIES	1	ENSGT00940000163440	ENSGT00940000162409	ENSGT00940000160005.A	ENSGT00940000163778	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162741.i.b	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00910000147289	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36
Euarchontoglires	ANCESTRAL SPECIES	1	ENSGT00940000162409	ENSGT00940000163419	ENSGT00940000160005.A	ENSGT00940000163778	ENSGT00940000163440	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00910000147289	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00940000157301.b	ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36	ENSGT01030000234592.B
Glires	ANCESTRAL SPECIES	1	ENSGT00940000157301.b	ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36	ENSGT01030000234592.B
Rodentia	ANCESTRAL SPECIES	1	ENSGT00940000157301.b	ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00940000169594	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00940000157301.b	ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174.f #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00940000169594	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36
Hystricomorpha	ANCESTRAL SPECIES	5	ENSGT00940000157301.b	ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174.f #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00940000169594	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084.u #35	ENSGT00940000162152 #36
Hystricomorpha_a	ANCESTRAL SPECIES	10	ENSGT00940000157301.b	ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174.f #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00940000169594	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084.u #35	ENSGT00940000162152 #36
Guinea pig	MODERN SPECIES	40	CTSC (ENSCPOG00000014848) #7	GRM5 (ENSCPOG00000009056) #8	ENSCPOG00000039497 #9	TYR (ENSCPOG00000010608) #10	NOX4 (ENSCPOG00000040335) #11	FOLH1 (ENSCPOG00000003797) #12	NAALAD2 (ENSCPOG00000038440) #13	CHORDC1 (ENSCPOG00000022614) #14	ENSCPOG00000010626 #15	MTNR1B (ENSCPOG00000010637) #16	SLC36A4 (ENSCPOG00000036098) #17	DEUP1 (ENSCPOG00000011016) #18	SMCO4 (ENSCPOG00000032286) #19	CEP295 (ENSCPOG00000032006) #20	TAF1D (ENSCPOG00000002426) #21	C11orf54 (ENSCPOG00000014146) #22	MED17 (ENSCPOG00000014149) #23	VSTM5 (ENSCPOG00000024881) #24	HEPHL1 (ENSCPOG00000004098) #25	PANX1 (ENSCPOG00000039148) #26	IZUMO1R (ENSCPOG00000011657) #27	GPR83 (ENSCPOG00000039200) #28	MRE11 (ENSCPOG00000014563) #29	ANKRD49 (ENSCPOG00000030391) #30	C11orf97 (ENSCPOG00000031459) #31	FUT4 (ENSCPOG00000000069) #32	PIWIL4 (ENSCPOG00000000070) #33	AMOTL1 (ENSCPOG00000006241) #34	CWC15 (ENSCPOG00000006249) #35	KDM4D (ENSCPOG00000006256) #36
Hystricomorpha_b	ANCESTRAL SPECIES	5	ENSGT00940000157301.b	ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174.f #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00940000169594	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30
Long-tailed chinchilla	MODERN SPECIES	121	ENSCLAG00000014570 #8	TYR (ENSCLAG00000016284) #10	ENSCLAG00000013267	NOX4 (ENSCLAG00000014011) #11	FOLH1 (ENSCLAG00000014594) #12	NAALAD2 (ENSCLAG00000012474) #13	ENSCLAG00000014963 #14	FAT3 (ENSCLAG00000013669) #15	ENSCLAG00000012677	MTNR1B (ENSCLAG00000012055) #16	SLC36A4 (ENSCLAG00000015872) #17	DEUP1 (ENSCLAG00000013832) #18	SMCO4 (ENSCLAG00000011932) #19	CEP295 (ENSCLAG00000014683) #20	TAF1D (ENSCLAG00000014698) #21	C11orf54 (ENSCLAG00000017272) #22	MED17 (ENSCLAG00000017202) #23	VSTM5 (ENSCLAG00000016423) #24	HEPHL1 (ENSCLAG00000015721) #25	PANX1 (ENSCLAG00000014612) #26	IZUMO1R (ENSCLAG00000015110) #27	ENSCLAG00000013252	GPR83 (ENSCLAG00000013629) #28	ENSCLAG00000013392 #29	ANKRD49 (ENSCLAG00000015054) #30
Degu	MODERN SPECIES	250								ENSODEG00000018835	ENSODEG00000002534	FAT3 (ENSODEG00000002606) #15	MTNR1B (ENSODEG00000002125) #16	SLC36A4 (ENSODEG00000002145) #17	DEUP1 (ENSODEG00000002198) #18	SMCO4 (ENSODEG00000018804) #19	TAF1D (ENSODEG00000002225) #21	C11orf54 (ENSODEG00000002265) #22	MED17 (ENSODEG00000002353) #23	VSTM5 (ENSODEG00000002406) #24	ENSODEG00000002422	HEPHL1 (ENSODEG00000002492) #25	ENSODEG00000000644 #26	ENSODEG00000000623	IZUMO1R (ENSODEG00000000695) #27	GPR83 (ENSODEG00000000724) #28	ENSODEG00000001221 #30	ENSODEG00000001233
Naked mole-rat female	MODERN SPECIES	24	ENSHGLG00000000730 #11	ENSHGLG00000047307	FOLH1 (ENSHGLG00000005991) #12	ENSHGLG00000020460	UBTFL1 (ENSHGLG00000034220)	ENSHGLG00000003627	ENSHGLG00000002890 #13	ENSHGLG00000007922 #14	ENSHGLG00000006607	ENSHGLG00000050821	FAT3 (ENSHGLG00000010388) #15	ENSHGLG00000044735 #16	SLC36A4 (ENSHGLG00000044885) #17	ENSHGLG00000020910	ENSHGLG00000014481 #20	C11orf54 (ENSHGLG00000012597) #22	TAF1D (ENSHGLG00000008795) #21	MED17 (ENSHGLG00000006191) #23	VSTM5 (ENSHGLG00000007424) #24	ENSHGLG00000048701	ENSHGLG00000049421	HEPHL1 (ENSHGLG00000005416) #25	PANX1 (ENSHGLG00000007682) #26	ENSHGLG00000050118	IZUMO1R (ENSHGLG00000008985) #27	ENSHGLG00000019637 #36	GPR83 (ENSHGLG00000018711) #28	MRE11A (ENSHGLG00000015754) #29	ANKRD49 (ENSHGLG00000014039) #30	ENSHGLG00000014136 #31	FUT4 (ENSHGLG00000005608) #32
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT00940000163440	ENSGT00940000160005.A.n	ENSGT00940000162409	ENSGT00940000163419	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174.f #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152.g.a #36	ENSGT00940000162152.g.b #36
Marmotini	ANCESTRAL SPECIES	20					ENSGT00940000160005.A.n	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174.f #14	ENSGT00940000178162	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152.g.a #36	ENSGT00940000162152.g.b #36
Marmotini_b	ANCESTRAL SPECIES	155								ENSGT00940000178162	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152.g.a #36	ENSGT00940000162152.g.b #36
Arctic ground squirrel	MODERN SPECIES	166									ENSUPAG00010000873	FAT3 (ENSUPAG00010000879) #15	MTNR1B (ENSUPAG00010000937) #16	SLC36A4 (ENSUPAG00010000949) #17	DEUP1 (ENSUPAG00010000984) #18	CEP295 (ENSUPAG00010001137) #20	TAF1D (ENSUPAG00010001478) #21	C11orf54 (ENSUPAG00010001486) #22	MED17 (ENSUPAG00010001622) #23	VSTM5 (ENSUPAG00010001672) #24	HEPHL1 (ENSUPAG00010001691) #25	PANX1 (ENSUPAG00010001730) #26	ENSUPAG00010001744	IZUMO1R (ENSUPAG00010001756) #27	GPR83 (ENSUPAG00010001763) #28	MRE11 (ENSUPAG00010001790) #29	ANKRD49 (ENSUPAG00010001896) #30	C11orf97 (ENSUPAG00010001935) #31	FUT4 (ENSUPAG00010001953) #32	PIWIL4 (ENSUPAG00010001982) #33	AMOTL1 (ENSUPAG00010002044) #34	CWC15 (ENSUPAG00010002076) #35	KDM4D (ENSUPAG00010002086) #36
Squirrel	MODERN SPECIES	274									FAT3 (ENSSTOG00000008783) #15	MTNR1B (ENSSTOG00000008849) #16	SLC36A4 (ENSSTOG00000008854) #17	DEUP1 (ENSSTOG00000011722) #18	SMCO4 (ENSSTOG00000008008) #19	CEP295 (ENSSTOG00000008015) #20	TAF1D (ENSSTOG00000030516) #21	C11orf54 (ENSSTOG00000008061) #22	MED17 (ENSSTOG00000008098) #23	VSTM5 (ENSSTOG00000025751) #24	ENSSTOG00000033997	HEPHL1 (ENSSTOG00000026323) #25	PANX1 (ENSSTOG00000006851) #26	ENSSTOG00000032468	IZUMO1R (ENSSTOG00000032389) #27	GPR83 (ENSSTOG00000006859) #28	MRE11 (ENSSTOG00000006869) #29	ANKRD49 (ENSSTOG00000028263) #30	C11orf97 (ENSSTOG00000032509) #31	FUT4 (ENSSTOG00000006910) #32	ENSSTOG00000006932 #33	AMOTL1 (ENSSTOG00000002462) #34	CWC15 (ENSSTOG00000002485) #35
Alpin marmot	MODERN SPECIES	25				ENSMMMG00000004728	NAALAD2 (ENSMMMG00000004701) #13	CHORDC1 (ENSMMMG00000004692) #14	ENSMMMG00000004674	ENSMMMG00000004671	FAT3 (ENSMMMG00000004600) #15	MTNR1B (ENSMMMG00000004580) #16	SLC36A4 (ENSMMMG00000004555) #17	DEUP1 (ENSMMMG00000004469) #18	SMCO4 (ENSMMMG00000004447) #19	CEP295 (ENSMMMG00000004214) #20	TAF1D (ENSMMMG00000004115) #21	C11orf54 (ENSMMMG00000004067) #22	MED17 (ENSMMMG00000004045) #23	VSTM5 (ENSMMMG00000004034) #24	HEPHL1 (ENSMMMG00000003995) #25	PANX1 (ENSMMMG00000003980) #26	IZUMO1R (ENSMMMG00000003960) #27	GPR83 (ENSMMMG00000003939) #28	MRE11 (ENSMMMG00000003822) #29	ANKRD49 (ENSMMMG00000003801) #30	C11orf97 (ENSMMMG00000003791) #31	FUT4 (ENSMMMG00000003775) #32	PIWIL4 (ENSMMMG00000003741) #33	AMOTL1 (ENSMMMG00000003717) #34	CWC15 (ENSMMMG00000003695) #35	ENSMMMG00000003692 #36	ENSMMMG00000003680 #36
Eurasian red squirrel	MODERN SPECIES	2	ENSSVLG00005022908	ENSSVLG00005022933	ENSSVLG00005022975	ENSSVLG00005023136	ENSSVLG00005023329	NAALAD2 (ENSSVLG00005023397) #13	ENSSVLG00005023505 #14	FAT3 (ENSSVLG00005023682) #15	MTNR1B (ENSSVLG00005023956) #16	SLC36A4 (ENSSVLG00005023972) #17	ENSSVLG00005024017	DEUP1 (ENSSVLG00005024034) #18	SMCO4 (ENSSVLG00005024149) #19	CEP295 (ENSSVLG00005024179) #20	TAF1D (ENSSVLG00005008868) #21	C11orf54 (ENSSVLG00005008945) #22	MED17 (ENSSVLG00005009035) #23	VSTM5 (ENSSVLG00005009102) #24	HEPHL1 (ENSSVLG00005009168) #25	PANX1 (ENSSVLG00005009275) #26	IZUMO1R (ENSSVLG00005009300) #27	GPR83 (ENSSVLG00005009337) #28	MRE11 (ENSSVLG00005009395) #29	ENSSVLG00005009454	ANKRD49 (ENSSVLG00005009488) #30	C11orf97 (ENSSVLG00005009503) #31	FUT4 (ENSSVLG00005009540) #32	PIWIL4 (ENSSVLG00005009583) #33	AMOTL1 (ENSSVLG00005009738) #34	CWC15 (ENSSVLG00005009802) #35	KDM4D (ENSSVLG00005009838) #36
Rodentia_B	ANCESTRAL SPECIES	23						ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00940000169594	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36
Kangaroo rat	MODERN SPECIES	433										Fat3 (ENSDORG00000024314) #15	Mtnr1b (ENSDORG00000026210) #16	ENSDORG00000002749	Slc36a4 (ENSDORG00000027198) #17	Deup1 (ENSDORG00000011685) #18	Smco4 (ENSDORG00000001107) #19	4931406C07Rik (ENSDORG00000005004) #22	Med17 (ENSDORG00000005005) #23	Vstm5 (ENSDORG00000004620) #24	Hephl1 (ENSDORG00000005176) #25	ENSDORG00000028004	Izumo1r (ENSDORG00000005007) #27	Gpr83 (ENSDORG00000004374) #28	ENSDORG00000004828 #29	Iws1 (ENSDORG00000007385)	Myo7b (ENSDORG00000015044)	Gpr17 (ENSDORG00000015052)	Lims2 (ENSDORG00000015051)	Wdr33 (ENSDORG00000023513)	Polr2d (ENSDORG00000026897)	Ammecr1l (ENSDORG00000028104)	Sap130 (ENSDORG00000015563)
Myomorpha	ANCESTRAL SPECIES	23						ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36	ENSGT01030000234592.B
Muroidea	ANCESTRAL SPECIES	29						ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36	ENSGT01030000234592.B
Upper Galilee mountains blind mole rat	MODERN SPECIES	1827													Deup1 (ENSNGAG00000015010) #18	Smco4 (ENSNGAG00000019710) #19	Cep295 (ENSNGAG00000020811) #20	4931406C07Rik (ENSNGAG00000019210) #22	Med17 (ENSNGAG00000005765) #23	Vstm5 (ENSNGAG00000008846) #24	Hephl1 (ENSNGAG00000012499) #25	ENSNGAG00000004656	Panx1 (ENSNGAG00000014760) #26	Izumo1r (ENSNGAG00000009610) #27	Gpr83 (ENSNGAG00000015036) #28	Mre11a (ENSNGAG00000010330) #29	Ankrd49 (ENSNGAG00000012789) #30	1700012B09Rik (ENSNGAG00000013078) #31	Piwil4 (ENSNGAG00000022297) #33	Amotl1 (ENSNGAG00000012913) #34	Cwc15 (ENSNGAG00000016450) #35	Kdm4d (ENSNGAG00000019223) #36	Endod1 (ENSNGAG00000019861)
Muroidea_A	ANCESTRAL SPECIES	23	ENSGT00940000163044	ENSGT00440000039287	ENSGT00950000183005.b.c.a	ENSGT00940000160844.a	ENSGT00950000183005.b.c.b	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36	ENSGT01030000234592.B
Cricetidae	DUPLICATION
Cricetidae	ANCESTRAL SPECIES	4	ENSGT00940000154131.f.a.a.b	ENSGT00940000163044	ENSGT00440000039287	ENSGT00950000183005.b.c.a	ENSGT00940000160844.a	ENSGT00950000183005.b.c.b	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214.m #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36	ENSGT01030000234592.B
Cricetidae_B	ANCESTRAL SPECIES	61		ENSGT00940000163044	ENSGT00440000039287	ENSGT00950000183005.b.c.a	ENSGT00940000160844.a	ENSGT00950000183005.b.c.b	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214.m #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36
Northern American deer mouse	MODERN SPECIES	20	ENSPEMG00000009529	ENSPEMG00000004149	Mbd3l1 (ENSPEMG00000009423)	Zfp558 (ENSPEMG00000025515)	ENSPEMG00000002125	Naalad2 (ENSPEMG00000018071) #13	Chordc1 (ENSPEMG00000030600) #14	ENSPEMG00000031155	Fat3 (ENSPEMG00000013197) #15	Mtnr1b (ENSPEMG00000000316) #16	Slc36a4 (ENSPEMG00000023886) #17	Deup1 (ENSPEMG00000016493) #18	Smco4 (ENSPEMG00000027427) #19	Cep295 (ENSPEMG00000023772) #20	Taf1d (ENSPEMG00000023691) #21	4931406C07Rik (ENSPEMG00000023421) #22	Med17 (ENSPEMG00000024047) #23	Vstm5 (ENSPEMG00000028348) #24	ENSPEMG00000002357	Hephl1 (ENSPEMG00000021631) #25	Panx1 (ENSPEMG00000010979) #26	Izumo1r (ENSPEMG00000021678) #27	Gpr83 (ENSPEMG00000022377) #28	ENSPEMG00000030623	Mre11a (ENSPEMG00000023250) #29	1700012B09Rik (ENSPEMG00000012698) #31	ENSPEMG00000025171 #32	Piwil4 (ENSPEMG00000023859) #33	Amotl1 (ENSPEMG00000021905) #34	Cwc15 (ENSPEMG00000021432) #35	Kdm4d (ENSPEMG00000001845) #36
Prairie vole	MODERN SPECIES	13	ENSMOCG00000004665	Or1m1 (ENSMOCG00000006062)	ENSMOCG00000006310	Zfp558 (ENSMOCG00000018648)	Naalad2 (ENSMOCG00000004722) #13	Chordc1 (ENSMOCG00000002318) #14	ENSMOCG00000016118	Fat3 (ENSMOCG00000011364) #15	Mtnr1b (ENSMOCG00000007650) #16	Slc36a4 (ENSMOCG00000018384) #17	Deup1 (ENSMOCG00000020791) #18	Smco4 (ENSMOCG00000006274) #19	ENSMOCG00000021789	Cep295 (ENSMOCG00000021770) #20	Taf1d (ENSMOCG00000014011) #21	4931406C07Rik (ENSMOCG00000012170) #22	Med17 (ENSMOCG00000018802) #23	Vstm5 (ENSMOCG00000012686) #24	ENSMOCG00000015072	ENSMOCG00000021818	Alkbh8 (ENSMOCG00000019349)	Cwf19l2 (ENSMOCG00000010389)	Endod1 (ENSMOCG00000016035)	Sesn3 (ENSMOCG00000013595)	Fam76b (ENSMOCG00000001551)	Cep57 (ENSMOCG00000005014)	Mtmr2 (ENSMOCG00000009930)	Maml2 (ENSMOCG00000021568)	ENSMOCG00000019222	Ccdc82 (ENSMOCG00000019062)	Jrkl (ENSMOCG00000004889)
Cricetinae	ANCESTRAL SPECIES	45							ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214.m #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36	ENSGT01030000234592.B
Chinese hamster chok1gshd	MODERN SPECIES	310					Naalad2 (ENSCGRG00001017192) #13	Chordc1 (ENSCGRG00001004673) #14	ENSCGRG00001007587	Fat3 (ENSCGRG00001016740) #15	Mtnr1b (ENSCGRG00001017947) #16	Slc36a4 (ENSCGRG00001005789) #17	Deup1 (ENSCGRG00001012085) #18	Smco4 (ENSCGRG00001013247) #19	ENSCGRG00001018019	Cep295 (ENSCGRG00001000538) #20	Taf1d (ENSCGRG00001004962) #21	4931406C07Rik (ENSCGRG00001008949) #22	MED17 (ENSCGRG00001017473) #23	Vstm5 (ENSCGRG00001006156) #24	Hephl1 (ENSCGRG00001014172) #25	PANX (ENSCGRG00001016361) #26	Izumo1r (ENSCGRG00001016589) #27	Gpr83 (ENSCGRG00001018677) #28	Mre11a (ENSCGRG00001006581) #29	Ankrd49 (ENSCGRG00001014107) #30	1700012B09Rik (ENSCGRG00001015499) #31	Fut4 (ENSCGRG00001013612) #32	Piwil4 (ENSCGRG00001017873) #33	Amotl1 (ENSCGRG00001011579) #34	Cwc15 (ENSCGRG00001013337) #35	Kdm4d (ENSCGRG00001013157) #36
Golden Hamster	MODERN SPECIES	778									Naalad2 (ENSMAUG00000008805) #13	Chordc1 (ENSMAUG00000012157) #14	Fat3 (ENSMAUG00000007614) #15	Slc36a4 (ENSMAUG00000001281) #17	Deup1 (ENSMAUG00000001957) #18	Smco4 (ENSMAUG00000000425) #19	Taf1d (ENSMAUG00000002515) #21	4931406C07Rik (ENSMAUG00000000356) #22	Med17 (ENSMAUG00000000493) #23	Vstm5 (ENSMAUG00000000333) #24	Hephl1 (ENSMAUG00000017278) #25	ENSMAUG00000015499 #26	ENSMAUG00000015032	Izumo1r (ENSMAUG00000018564) #27	Gpr83 (ENSMAUG00000017943) #28	ENSMAUG00000016290 #29	Ankrd49 (ENSMAUG00000014988) #30	1700012B09Rik (ENSMAUG00000014010) #31	ENSMAUG00000015824	Fut4 (ENSMAUG00000015849) #32	Piwil4 (ENSMAUG00000011382) #33	Amotl1 (ENSMAUG00000012162) #34	Cwc15 (ENSMAUG00000011686) #35
Cricetidae	ANCESTRAL SPECIES																	ENSGT00390000017214.n #22
Cricetidae_B	ANCESTRAL SPECIES																	ENSGT00390000017214.n #22
Northern American deer mouse	MODERN SPECIES		Ube3a (ENSPEMG00000021010)	Atp10a (ENSPEMG00000020854)	Gabrb3 (ENSPEMG00000023767)	Gabra5 (ENSPEMG00000019839)	Gabrg3 (ENSPEMG00000019431)	Oca2 (ENSPEMG00000020098)	Herc2 (ENSPEMG00000019120)	Nipa1 (ENSPEMG00000011557)	Nipa2 (ENSPEMG00000028381)	Cyfip1 (ENSPEMG00000020064)	Tubgcp5 (ENSPEMG00000017749)	Siglech (ENSPEMG00000016963)	Luzp2 (ENSPEMG00000019695)	ENSPEMG00000028728	ENSPEMG00000019594	ENSPEMG00000028549 #22	ENSPEMG00000013216	ENSPEMG00000011562	ENSPEMG00000022031	ENSPEMG00000022662	Uevld (ENSPEMG00000012328)	Misfa (ENSPEMG00000021845)	ENSPEMG00000021660	ENSPEMG00000023153	Tmem86a (ENSPEMG00000024287)	Ptpn5 (ENSPEMG00000022553)	ENSPEMG00000021299	ENSPEMG00000022426	Mrgprx1 (ENSPEMG00000007777)	ENSPEMG00000025968	ENSPEMG00000027080
Murinae	ANCESTRAL SPECIES	3	ENSGT00940000163044	ENSGT00440000039287	ENSGT00950000183005.b.c.a	ENSGT00940000160844.a	ENSGT00950000183005.b.c.b	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36	ENSGT01030000234592.B
Mus	ANCESTRAL SPECIES	4	ENSGT00940000163044	ENSGT00440000039287	ENSGT00950000183005.b.c.a	ENSGT00940000160844.a	ENSGT00950000183005.b.c.b	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36	ENSGT01030000234592.B
Mus_A	ANCESTRAL SPECIES	4	ENSGT00940000163044	ENSGT00440000039287	ENSGT00950000183005.b.c.a	ENSGT00940000160844.a	ENSGT00950000183005.b.c.b	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36	ENSGT01030000234592.B
Mus_B	ANCESTRAL SPECIES	3	ENSGT00940000163044	ENSGT00440000039287	ENSGT00950000183005.b.c.a	ENSGT00940000160844.a	ENSGT00950000183005.b.c.b	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36	ENSGT01030000234592.B
Mus_C	ANCESTRAL SPECIES	8	ENSGT00440000039287	ENSGT00950000183005.b.c.a	ENSGT00940000160844.a	ENSGT00950000183005.b.c.b	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000153052.c.b.b.b.d.a.a	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36	ENSGT01030000234592.B
Steppe mouse	MODERN SPECIES	3318	Zfp558 (ENSMSIG00000014968)	Naalad2 (ENSMSIG00000014984) #13	Mbd3l2 (ENSMSIG00000015109)	Ubtfl1 (ENSMSIG00000015135)	Chordc1 (ENSMSIG00000015139) #14	ENSMSIG00000015167	ENSMSIG00000015180	ENSMSIG00000015183	Fat3 (ENSMSIG00000015207) #15	Mtnr1b (ENSMSIG00000015621) #16	Slc36a4 (ENSMSIG00000015623) #17	Deup1 (ENSMSIG00000015751) #18	ENSMSIG00000015880 #19	Cep295 (ENSMSIG00000015917) #20	Taf1d (ENSMSIG00000016165) #21	4931406C07Rik (ENSMSIG00000016204) #22	Med17 (ENSMSIG00000016253) #23	Vstm5 (ENSMSIG00000016281) #24	Hephl1 (ENSMSIG00000016306) #25	Panx1 (ENSMSIG00000016343) #26	Izumo1r (ENSMSIG00000016359) #27	Gpr83 (ENSMSIG00000016567) #28	ENSMSIG00000016588	Mre11a (ENSMSIG00000016606) #29	Ankrd49 (ENSMSIG00000016701) #30	1700012B09Rik (ENSMSIG00000016716) #31	Fut4 (ENSMSIG00000016738) #32	Piwil4 (ENSMSIG00000016745) #33	Amotl1 (ENSMSIG00000016862) #34	Cwc15 (ENSMSIG00000017024) #35	ENSMSIG00000017048 #36
spretus	MODERN SPECIES	18	Or1m1 (MGP_SPRETEiJ_G0032930)	MGP_SPRETEiJ_G0032929	Mbd3l1 (MGP_SPRETEiJ_G0032928)	Zfp558 (MGP_SPRETEiJ_G0032927)	Mbd3l2 (MGP_SPRETEiJ_G0032926)	Ubtfl1 (MGP_SPRETEiJ_G0032925)	Naalad2 (MGP_SPRETEiJ_G0032924) #13	Chordc1 (MGP_SPRETEiJ_G0032923) #14	MGP_SPRETEiJ_G0032922	Fat3 (MGP_SPRETEiJ_G0032921) #15	MGP_SPRETEiJ_G0032920 #16	Slc36a4 (MGP_SPRETEiJ_G0032919) #17	Deup1 (MGP_SPRETEiJ_G0032918) #18	Smco4 (MGP_SPRETEiJ_G0032917) #19	Cep295 (MGP_SPRETEiJ_G0032916) #20	4931406C07Rik (MGP_SPRETEiJ_G0032915) #22	Med17 (MGP_SPRETEiJ_G0032914) #23	Vstm5 (MGP_SPRETEiJ_G0032913) #24	Hephl1 (MGP_SPRETEiJ_G0032912) #25	Panx1 (MGP_SPRETEiJ_G0032911) #26	Izumo1r (MGP_SPRETEiJ_G0032910) #27	MGP_SPRETEiJ_G0032909 #28	Mre11a (MGP_SPRETEiJ_G0032908) #29	Ankrd49 (MGP_SPRETEiJ_G0032907) #30	1700012B09Rik (MGP_SPRETEiJ_G0032906) #31	Fut4 (MGP_SPRETEiJ_G0032905) #32	Piwil4 (MGP_SPRETEiJ_G0032904) #33	Amotl1 (MGP_SPRETEiJ_G0032903) #34	Cwc15 (MGP_SPRETEiJ_G0032902) #35	Kdm4d (MGP_SPRETEiJ_G0032901) #36	Endod1 (MGP_SPRETEiJ_G0032900)
Mouse	MODERN SPECIES	18	Or1m1 (ENSMUSG00000054141)	Muc16 (ENSMUSG00000109564)	Mbd3l1 (ENSMUSG00000038691)	Zfp558 (ENSMUSG00000074500)	Mbd3l2 (ENSMUSG00000047508)	Ubtfl1 (ENSMUSG00000074502)	Naalad2 (ENSMUSG00000043943) #13	Chordc1 (ENSMUSG00000001774) #14	Fat3 (ENSMUSG00000074505) #15	Mtnr1b (ENSMUSG00000050901) #16	Slc36a4 (ENSMUSG00000043885) #17	Deup1 (ENSMUSG00000039977) #18	Smco4 (ENSMUSG00000058173) #19	Cep295 (ENSMUSG00000046111) #20	Taf1d (ENSMUSG00000031939) #21	4931406C07Rik (ENSMUSG00000031938) #22	Med17 (ENSMUSG00000031935) #23	Vstm5 (ENSMUSG00000031937) #24	Hephl1 (ENSMUSG00000031936) #25	Panx1 (ENSMUSG00000031934) #26	Izumo1r (ENSMUSG00000031933) #27	Gpr83 (ENSMUSG00000031932) #28	Mre11a (ENSMUSG00000031928) #29	Ankrd49 (ENSMUSG00000031931) #30	1700012B09Rik (ENSMUSG00000031927) #31	Fut4 (ENSMUSG00000049307) #32	Piwil4 (ENSMUSG00000036912) #33	Amotl1 (ENSMUSG00000013076) #34	Cwc15 (ENSMUSG00000004096) #35	Kdm4d (ENSMUSG00000053914) #36	Endod1 (ENSMUSG00000037419)
Ryukyu mouse	MODERN SPECIES	18	Or1m1 (MGP_CAROLIEiJ_G0031810)	MGP_CAROLIEiJ_G0031809	Mbd3l1 (MGP_CAROLIEiJ_G0031808)	Zfp558 (MGP_CAROLIEiJ_G0031807)	Mbd3l2 (MGP_CAROLIEiJ_G0031806)	Ubtfl1 (MGP_CAROLIEiJ_G0031805)	Naalad2 (MGP_CAROLIEiJ_G0031804) #13	Chordc1 (MGP_CAROLIEiJ_G0031803) #14	Fat3 (MGP_CAROLIEiJ_G0031802) #15	Mtnr1b (MGP_CAROLIEiJ_G0031801) #16	Slc36a4 (MGP_CAROLIEiJ_G0031800) #17	Deup1 (MGP_CAROLIEiJ_G0031799) #18	Smco4 (MGP_CAROLIEiJ_G0031798) #19	Cep295 (MGP_CAROLIEiJ_G0031797) #20	Taf1d (MGP_CAROLIEiJ_G0031796) #21	4931406C07Rik (MGP_CAROLIEiJ_G0031795) #22	Med17 (MGP_CAROLIEiJ_G0031794) #23	Vstm5 (MGP_CAROLIEiJ_G0031793) #24	Hephl1 (MGP_CAROLIEiJ_G0031792) #25	Panx1 (MGP_CAROLIEiJ_G0031791) #26	Izumo1r (MGP_CAROLIEiJ_G0031790) #27	Gpr83 (MGP_CAROLIEiJ_G0031789) #28	Mre11a (MGP_CAROLIEiJ_G0031788) #29	Ankrd49 (MGP_CAROLIEiJ_G0031787) #30	1700012B09Rik (MGP_CAROLIEiJ_G0031786) #31	Fut4 (MGP_CAROLIEiJ_G0031785) #32	Piwil4 (MGP_CAROLIEiJ_G0031784) #33	Amotl1 (MGP_CAROLIEiJ_G0031783) #34	Cwc15 (MGP_CAROLIEiJ_G0031782) #35	Kdm4d (MGP_CAROLIEiJ_G0031781) #36	Endod1 (MGP_CAROLIEiJ_G0031780)
Shrew mouse	MODERN SPECIES	1	Or1m1 (MGP_PahariEiJ_G0014686)	MGP_PahariEiJ_G0014685	Mbd3l1 (MGP_PahariEiJ_G0014684)	Zfp558 (MGP_PahariEiJ_G0014683)	Mbd3l2 (MGP_PahariEiJ_G0014682)	Ubtfl1 (MGP_PahariEiJ_G0014681)	MGP_PahariEiJ_G0014680	Chordc1 (MGP_PahariEiJ_G0014679) #14	Fat3 (MGP_PahariEiJ_G0014678) #15	Mtnr1b (MGP_PahariEiJ_G0014677) #16	Slc36a4 (MGP_PahariEiJ_G0014676) #17	Deup1 (MGP_PahariEiJ_G0014675) #18	Smco4 (MGP_PahariEiJ_G0014674) #19	Cep295 (MGP_PahariEiJ_G0014673) #20	MGP_PahariEiJ_G0014672 #21	4931406C07Rik (MGP_PahariEiJ_G0014671) #22	Med17 (MGP_PahariEiJ_G0014670) #23	Vstm5 (MGP_PahariEiJ_G0014669) #24	MGP_PahariEiJ_G0014668 #25	Panx1 (MGP_PahariEiJ_G0014667) #26	Izumo1r (MGP_PahariEiJ_G0014666) #27	Gpr83 (MGP_PahariEiJ_G0014665) #28	Mre11a (MGP_PahariEiJ_G0014664) #29	Ankrd49 (MGP_PahariEiJ_G0014663) #30	1700012B09Rik (MGP_PahariEiJ_G0014662) #31	Fut4 (MGP_PahariEiJ_G0014661) #32	Piwil4 (MGP_PahariEiJ_G0014660) #33	Amotl1 (MGP_PahariEiJ_G0014659) #34	Cwc15 (MGP_PahariEiJ_G0014658) #35	Kdm4d (MGP_PahariEiJ_G0014657) #36	Endod1 (MGP_PahariEiJ_G0014656)
Rat	MODERN SPECIES	18	ENSRNOG00000070900	Naalad2 (ENSRNOG00000005955) #13	Chordc1 (ENSRNOG00000026643) #14	LOC120097744 (ENSRNOG00000064258)	LOC690235 (ENSRNOG00000024200)	ENSRNOG00000031660	Nek2l1 (ENSRNOG00000012119)	LOC689840 (ENSRNOG00000031522)	Fat3 (ENSRNOG00000011585) #15	Mtnr1b (ENSRNOG00000008972) #16	Slc36a4 (ENSRNOG00000011455) #17	Deup1 (ENSRNOG00000061247) #18	Smco4 (ENSRNOG00000011162) #19	Cep295 (ENSRNOG00000010999) #20	Taf1d (ENSRNOG00000010921) #21	C8h11orf54 (ENSRNOG00000010887) #22	Med17 (ENSRNOG00000010496) #23	Vstm5 (ENSRNOG00000010480) #24	ENSRNOG00000062992	Hephl1 (ENSRNOG00000056092) #25	Panx1 (ENSRNOG00000010060) #26	Izumo1r (ENSRNOG00000019894) #27	Gpr83 (ENSRNOG00000030318) #28	Mre11 (ENSRNOG00000009506) #29	Ankrd49 (ENSRNOG00000009233) #30	C8h11orf97 (ENSRNOG00000009203) #31	Fut4 (ENSRNOG00000009157) #32	Piwil4 (ENSRNOG00000009043) #33	Amotl1 (ENSRNOG00000008990) #34	Cwc15 (ENSRNOG00000008490) #35	LOC108348070 (ENSRNOG00000045905) #36
Lagomorpha	ANCESTRAL SPECIES	5	ENSGT00940000157301.b	ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36	ENSGT01030000234592.B
Rabbit	MODERN SPECIES		FOLH1 (ENSOCUG00000026120) #12	TRIM77 (ENSOCUG00000026390)	ENSOCUG00000008705	ENSOCUG00000027036	ENSOCUG00000011049	ENSOCUG00000036248	NAALAD2 (ENSOCUG00000014137) #13	ENSOCUG00000014147 #14	ENSOCUG00000023399	FAT3 (ENSOCUG00000007427) #15	MTNR1B (ENSOCUG00000008196) #16	SLC36A4 (ENSOCUG00000000649) #17	DEUP1 (ENSOCUG00000000199) #18	CEP295 (ENSOCUG00000029678) #20	ENSOCUG00000001096 #21	C11orf54 (ENSOCUG00000012810) #22	MED17 (ENSOCUG00000012818) #23	VSTM5 (ENSOCUG00000026554) #24	ENSOCUG00000029520	HEPHL1 (ENSOCUG00000009466) #25	PANX1 (ENSOCUG00000009473) #26	IZUMO1R (ENSOCUG00000013431) #27	GPR83 (ENSOCUG00000015502) #28	MRE11 (ENSOCUG00000014899) #29	ANKRD49 (ENSOCUG00000014912) #30	ENSOCUG00000033194	C11orf97 (ENSOCUG00000034472) #31	FUT4 (ENSOCUG00000014204) #32	PIWIL4 (ENSOCUG00000002860) #33	AMOTL1 (ENSOCUG00000001078) #34	CWC15 (ENSOCUG00000001629) #35
Pika	MODERN SPECIES	3920																C11orf54 (ENSOPRG00000000752) #22
Tree shrew	MODERN SPECIES	7750																ENSTBEG00000007819 #22
Primates	ANCESTRAL SPECIES		ENSGT00940000162409	ENSGT00940000163419	ENSGT00940000160005.A	ENSGT00940000163778	ENSGT00940000163440	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00910000147289	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36
Haplorrhini	ANCESTRAL SPECIES		ENSGT00940000162409	ENSGT00940000163419	ENSGT00940000160005.A	ENSGT00940000163778	ENSGT00940000163440	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00910000147289	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36
Simiiformes	ANCESTRAL SPECIES		ENSGT00940000160005.A	ENSGT00940000163419	ENSGT00940000162409	ENSGT00940000163440	ENSGT00940000163858	ENSGT00940000163213.a.b	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174.s.a.a.a #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288.c #29	ENSGT00390000003919 #30	ENSGT00910000147289	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36
Catarrhini	ANCESTRAL SPECIES	1	ENSGT00940000160005.A	ENSGT00940000163419	ENSGT00940000162409	ENSGT00940000163440	ENSGT00940000163213.a.b	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174.s.a.a.a #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00390000013073.a	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288.c #29	ENSGT00390000003919.e #30	ENSGT00910000147289	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36
Hominoidea	ANCESTRAL SPECIES	1	ENSGT00940000165665.b	ENSGT00940000163419.d.a.b	ENSGT00940000163419.c	ENSGT00940000163440.d	ENSGT00940000163213.a.b.b.a.b	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174.s.a.a.a.a #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00390000013073.a	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288.c #29	ENSGT00390000003919.e #30	ENSGT00910000147289	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36
Hominidae	ANCESTRAL SPECIES	1	ENSGT00940000163213.a.b.b.b	ENSGT00940000163419.d.a.a	ENSGT00940000163419.c	ENSGT00940000163440.d	ENSGT00940000163213.a.b.b.a.a	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174.s.a.a.a.a #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00390000013073.a	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288.c #29	ENSGT00390000003919.e #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36	ENSGT00940000165078.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	8	ENSGT00940000163213.a.b.b.b	ENSGT00940000163419.c	ENSGT00940000163440.d	ENSGT00940000163213.a.b.b.a.a.a.a	ENSGT00940000163213.a.b.b.a.a.b	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174.s.a.a.a.a #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00390000013073.a	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00390000018018.sb.a.b	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288.c #29	ENSGT00390000003919.e #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36
Homo/Pan group	ANCESTRAL SPECIES	1	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT00940000163778	ENSGT00940000165665.b.d	ENSGT00940000163419.c.b	ENSGT00940000163440.d	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174.s.a.a.a.a #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00390000018018.sb.a.b	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288.c #29	ENSGT00390000003919.e #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36
Pan	ANCESTRAL SPECIES	1	ENSGT00940000163440.d	ENSGT00940000163213.a.b.b.a.a.b	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174.s.a.a.a.a #14	ENSGT00950000182825.A.a.b.a.b.a.a.a.b	ENSGT00940000167275	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00390000008496.db.b	ENSGT00390000013073.a	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00390000018018.sb.a.b	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288.c #29	ENSGT00390000003919.e #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36
Chimpanzee	MODERN SPECIES	2	ENSPTRG00000034335	NAALAD2 (ENSPTRG00000004163) #13	CHORDC1 (ENSPTRG00000004164) #14	ENSPTRG00000051439	FAT3 (ENSPTRG00000004168) #15	MTNR1B (ENSPTRG00000004170) #16	SLC36A4 (ENSPTRG00000004171) #17	ENSPTRG00000043441	ENSPTRG00000043610	DEUP1 (ENSPTRG00000004172) #18	SMCO4 (ENSPTRG00000046135) #19	ENSPTRG00000045360	ENSPTRG00000048746	CEP295 (ENSPTRG00000004175) #20	TAF1D (ENSPTRG00000032462) #21	C11H11orf54 (ENSPTRG00000004177) #22	MED17 (ENSPTRG00000004178) #23	VSTM5 (ENSPTRG00000052018) #24	HEPHL1 (ENSPTRG00000004180) #25	PANX1 (ENSPTRG00000004181) #26	ENSPTRG00000044783	IZUMO1R (ENSPTRG00000004182) #27	GPR83 (ENSPTRG00000004183) #28	MRE11 (ENSPTRG00000004184) #29	ANKRD49 (ENSPTRG00000004185) #30	C11H11orf97 (ENSPTRG00000047025) #31	FUT4 (ENSPTRG00000028425) #32	PIWIL4 (ENSPTRG00000004187) #33	AMOTL1 (ENSPTRG00000004188) #34	CWC15 (ENSPTRG00000044239) #35	KDM4D (ENSPTRG00000004190) #36
Bonobo	MODERN SPECIES	2	NAALAD2 (ENSPPAG00000040316) #13	CHORDC1 (ENSPPAG00000029245) #14	ENSPPAG00000027721	ENSPPAG00000040312	ENSPPAG00000042139 #15	MTNR1B (ENSPPAG00000030637) #16	ENSPPAG00000039538	SLC36A4 (ENSPPAG00000038875) #17	ENSPPAG00000043411	DEUP1 (ENSPPAG00000028857) #18	SMCO4 (ENSPPAG00000016913) #19	ENSPPAG00000037680	ENSPPAG00000000088	CEP295 (ENSPPAG00000041025) #20	TAF1D (ENSPPAG00000034322) #21	C11orf54 (ENSPPAG00000038203) #22	MED17 (ENSPPAG00000038273) #23	VSTM5 (ENSPPAG00000037419) #24	HEPHL1 (ENSPPAG00000040046) #25	PANX1 (ENSPPAG00000040074) #26	ENSPPAG00000026114	IZUMO1R (ENSPPAG00000041423) #27	GPR83 (ENSPPAG00000039550) #28	MRE11 (ENSPPAG00000034731) #29	ANKRD49 (ENSPPAG00000037946) #30	C11orf97 (ENSPPAG00000031103) #31	FUT4 (ENSPPAG00000021481) #32	PIWIL4 (ENSPPAG00000031181) #33	AMOTL1 (ENSPPAG00000036699) #34	CWC15 (ENSPPAG00000033609) #35	KDM4E (ENSPPAG00000022047)
Human	MODERN SPECIES	2	TRIM64B (ENSG00000189253)	TRIM49D1 (ENSG00000223417)	TRIM49D2 (ENSG00000233802)	TRIM64 (ENSG00000204450)	TRIM49C (ENSG00000204449)	UBTFL1 (ENSG00000255009)	NAALAD2 (ENSG00000077616) #13	CHORDC1 (ENSG00000110172) #14	FAT3 (ENSG00000165323) #15	MTNR1B (ENSG00000134640) #16	SLC36A4 (ENSG00000180773) #17	DEUP1 (ENSG00000165325) #18	SMCO4 (ENSG00000166002) #19	CEP295 (ENSG00000166004) #20	TAF1D (ENSG00000166012) #21	C11orf54 (ENSG00000182919) #22	ENSG00000284057	MED17 (ENSG00000042429) #23	VSTM5 (ENSG00000214376) #24	HEPHL1 (ENSG00000181333) #25	PANX1 (ENSG00000110218) #26	IZUMO1R (ENSG00000183560) #27	GPR83 (ENSG00000123901) #28	MRE11 (ENSG00000020922) #29	ANKRD49 (ENSG00000168876) #30	C11orf97 (ENSG00000257057) #31	PIWIL4 (ENSG00000134627) #33	FUT4 (ENSG00000196371) #32	AMOTL1 (ENSG00000166025) #34	CWC15 (ENSG00000150316) #35	KDM4D (ENSG00000186280) #36
Gorilla	MODERN SPECIES	2	TYR (ENSGGOG00000009122) #10	ENSGGOG00000003220	ENSGGOG00000026540	ENSGGOG00000008355	ENSGGOG00000040268	NAALAD2 (ENSGGOG00000034824) #13	CHORDC1 (ENSGGOG00000027396) #14	FAT3 (ENSGGOG00000017065) #15	MTNR1B (ENSGGOG00000013924) #16	SLC36A4 (ENSGGOG00000028079) #17	DEUP1 (ENSGGOG00000016147) #18	SMCO4 (ENSGGOG00000011166) #19	ENSGGOG00000008382	CEP295 (ENSGGOG00000009396) #20	TAF1D (ENSGGOG00000028407) #21	C11orf54 (ENSGGOG00000014705) #22	MED17 (ENSGGOG00000010401) #23	VSTM5 (ENSGGOG00000010409) #24	HEPHL1 (ENSGGOG00000000624) #25	PANX (ENSGGOG00000005596) #26	ENSGGOG00000037261	IZUMO1R (ENSGGOG00000014840) #27	GPR83 (ENSGGOG00000007694) #28	MRE11 (ENSGGOG00000008192) #29	ANKRD49 (ENSGGOG00000008207) #30	C11orf97 (ENSGGOG00000036219) #31	PIWIL4 (ENSGGOG00000016276) #33	AMOTL1 (ENSGGOG00000001033) #34	CWC15 (ENSGGOG00000011926) #35	KDM4D (ENSGGOG00000010102) #36	SRSF8 (ENSGGOG00000022679)
Orangutan	MODERN SPECIES	2	ENSPPYG00000034343	ENSPPYG00000003760	ENSPPYG00000036641	ENSPPYG00000019959	ENSPPYG00000040269	ENSPPYG00000039594	ENSPPYG00000036793	NAALAD2 (ENSPPYG00000003763) #13	CHORDC1 (ENSPPYG00000003764) #14	FAT3 (ENSPPYG00000003767) #15	MTNR1B (ENSPPYG00000003768) #16	SLC36A4 (ENSPPYG00000003769) #17	DEUP1 (ENSPPYG00000003770) #18	CEP295 (ENSPPYG00000003773) #20	TAF1D (ENSPPYG00000003774) #21	C11orf54 (ENSPPYG00000003775) #22	MED17 (ENSPPYG00000003776) #23	VSTM5 (ENSPPYG00000003777) #24	HEPHL1 (ENSPPYG00000003778) #25	PANX1 (ENSPPYG00000003779) #26	IZUMO1R (ENSPPYG00000003780) #27	GPR83 (ENSPPYG00000041687) #28	MRE11 (ENSPPYG00000037469) #29	ENSPPYG00000041706	ENSPPYG00000029760 #31	FUT4 (ENSPPYG00000037042) #32	PIWIL4 (ENSPPYG00000003783) #33	AMOTL1 (ENSPPYG00000003784) #34	CWC15 (ENSPPYG00000003785) #35	KDM4E (ENSPPYG00000041335)	KDM4F (ENSPPYG00000037461)
Gibbon	MODERN SPECIES	5	TRIM77 (ENSNLEG00000015886)	ENSNLEG00000015860	ENSNLEG00000010471	ENSNLEG00000007077	ENSNLEG00000030564	NAALAD2 (ENSNLEG00000007078) #13	CHORDC1 (ENSNLEG00000007079) #14	ENSNLEG00000028688	FAT3 (ENSNLEG00000007081) #15	ENSNLEG00000027382 #16	SLC36A4 (ENSNLEG00000028135) #17	DEUP1 (ENSNLEG00000007089) #18	SMCO4 (ENSNLEG00000027353) #19	ENSNLEG00000030226	CEP295 (ENSNLEG00000007093) #20	C11orf54 (ENSNLEG00000007095) #22	TAF1D (ENSNLEG00000007094) #21	MED17 (ENSNLEG00000007096) #23	VSTM5 (ENSNLEG00000007101) #24	HEPHL1 (ENSNLEG00000007103) #25	PANX1 (ENSNLEG00000007105) #26	ENSNLEG00000007107	IZUMO1R (ENSNLEG00000007108) #27	GPR83 (ENSNLEG00000007109) #28	MRE11 (ENSNLEG00000007111) #29	ANKRD49 (ENSNLEG00000007115) #30	ENSNLEG00000033459	C11orf97 (ENSNLEG00000007117) #31	ENSNLEG00000007118 #32	PIWIL4 (ENSNLEG00000007119) #33	AMOTL1 (ENSNLEG00000007120) #34
Cercopithecidae	ANCESTRAL SPECIES		ENSGT00940000163213.a.b.c.b	ENSGT00940000163419	ENSGT00940000163440.b.a	ENSGT00940000160005.A.h	ENSGT00940000163213.a.b.c.a	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174.s.a.a.a #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00390000013073.a	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288.c #29	ENSGT00390000003919.e #30	ENSGT00910000147289	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36
Cercopithecinae	ANCESTRAL SPECIES	3	ENSGT00940000163440.b.b	ENSGT00940000162409	ENSGT00940000163419.g	ENSGT00940000163440.b.a	ENSGT00940000163213.a.b.c.a	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174.s.a.a.a #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00390000013073.a	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288.c #29	ENSGT00390000003919.e #30	ENSGT00910000147289	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36
Cercopithecinae_a	ANCESTRAL SPECIES	2	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT00940000163778	ENSGT00940000163440.b.a	ENSGT00940000163213.a.b.d	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174.s.a.a.a #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00390000013073.a	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288.c #29	ENSGT00390000003919.e #30	ENSGT00910000147289	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36
Macaca	ANCESTRAL SPECIES	2	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT00940000163778	ENSGT00940000163440.b.a	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.b.a.a.a.b.a.b.b.a.b	ENSGT00940000154174.s.a.a.a #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00390000013073.a	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288.c #29	ENSGT00390000003919.e #30	ENSGT00910000147289	ENSGT00520000058823 #31	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36	ENSGT00940000165078.a
Macaca_a	ANCESTRAL SPECIES	3	ENSGT00940000163440.b.a	ENSGT00940000163419.g	ENSGT00940000163440.b.b	ENSGT00940000160005.A.g.a	ENSGT00940000163213.a.b.c.a	ENSGT00940000163440.a.b.a	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174.s.a.a.a #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00390000017288.c #29	ENSGT00390000003919.e #30	ENSGT00520000058823 #31	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36	ENSGT00940000165078.a	ENSGT00940000165078.b	ENSGT00940000154883.g.a.a
Crab-eating macaque	MODERN SPECIES	5	ENSMFAG00000033361	ENSMFAG00000044028	ENSMFAG00000041752	ENSMFAG00000051720	ENSMFAG00000033612	ENSMFAG00000052719	NAALAD2 (ENSMFAG00000034412) #13	CHORDC1 (ENSMFAG00000035565) #14	FAT3 (ENSMFAG00000035883) #15	ENSMFAG00000055749	MTNR1B (ENSMFAG00000038271) #16	SLC36A4 (ENSMFAG00000041537) #17	DEUP1 (ENSMFAG00000032572) #18	CEP295 (ENSMFAG00000041174) #20	TAF1D (ENSMFAG00000039236) #21	C11orf54 (ENSMFAG00000039634) #22	ENSMFAG00000048679	MED17 (ENSMFAG00000003118) #23	VSTM5 (ENSMFAG00000054321) #24	HEPHL1 (ENSMFAG00000046086) #25	PANX1 (ENSMFAG00000002464) #26	IZUMO1R (ENSMFAG00000030684) #27	MRE11 (ENSMFAG00000039328) #29	ANKRD49 (ENSMFAG00000038557) #30	C11orf97 (ENSMFAG00000044586) #31	PIWIL4 (ENSMFAG00000042631) #33	AMOTL1 (ENSMFAG00000032749) #34	CWC15 (ENSMFAG00000044052) #35	KDM4D (ENSMFAG00000024894) #36	ENSMFAG00000040102	KDM4F (ENSMFAG00000059067)
Pig-tailed macaque	MODERN SPECIES	109	ENSMNEG00000041095	ENSMNEG00000044387	ENSMNEG00000009246	NAALAD2 (ENSMNEG00000042681) #13	CHORDC1 (ENSMNEG00000039325) #14	ENSMNEG00000013846	ENSMNEG00000032920	FAT3 (ENSMNEG00000033595) #15	MTNR1B (ENSMNEG00000031635) #16	SLC36A4 (ENSMNEG00000044920) #17	DEUP1 (ENSMNEG00000041961) #18	SMCO4 (ENSMNEG00000013588) #19	ENSMNEG00000042890	CEP295 (ENSMNEG00000041554) #20	TAF1D (ENSMNEG00000040024) #21	C11orf54 (ENSMNEG00000013934) #22	MED17 (ENSMNEG00000028879) #23	VSTM5 (ENSMNEG00000045447) #24	HEPHL1 (ENSMNEG00000038689) #25	PANX1 (ENSMNEG00000035007) #26	IZUMO1R (ENSMNEG00000030482) #27	GPR83 (ENSMNEG00000043160) #28	MRE11 (ENSMNEG00000029815) #29	ANKRD49 (ENSMNEG00000034043) #30	ENSMNEG00000020136	C11orf97 (ENSMNEG00000031514) #31	PIWIL4 (ENSMNEG00000037456) #33	AMOTL1 (ENSMNEG00000044021) #34	CWC15 (ENSMNEG00000033968) #35	KDM4D (ENSMNEG00000026134) #36	ENSMNEG00000035040
Cercopithecinae_b	ANCESTRAL SPECIES	21					ENSGT00940000162409	ENSGT00940000163213.a.a	ENSGT00940000167275	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00390000013073.a	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288.c #29	ENSGT00390000003919.e #30	ENSGT00910000147289	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36
Olive baboon	MODERN SPECIES	3	ENSPANG00000022721	ENSPANG00000049769	ENSPANG00000047081	ENSPANG00000045071	ENSPANG00000038934	ENSPANG00000040125	FAT3 (ENSPANG00000018585) #15	MTNR1B (ENSPANG00000018013) #16	ENSPANG00000044418	ENSPANG00000047752	SLC36A4 (ENSPANG00000004551) #17	DEUP1 (ENSPANG00000010678) #18	SMCO4 (ENSPANG00000000062) #19	CEP295 (ENSPANG00000008341) #20	TAF1D (ENSPANG00000018408) #21	C11orf54 (ENSPANG00000008370) #22	MED17 (ENSPANG00000022409) #23	VSTM5 (ENSPANG00000004039) #24	ENSPANG00000045474	HEPHL1 (ENSPANG00000019176) #25	PANX1 (ENSPANG00000019663) #26	ENSPANG00000040070	IZUMO1R (ENSPANG00000034439) #27	ENSPANG00000040668	MRE11 (ENSPANG00000017475) #29	ENSPANG00000032105 #31	FUT4 (ENSPANG00000051031) #32	ENSPANG00000046304	PIWIL4 (ENSPANG00000016066) #33	AMOTL1 (ENSPANG00000018871) #34	CWC15 (ENSPANG00000019125) #35
Cercopithecinae_d	ANCESTRAL SPECIES	45							ENSGT00940000167275	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00390000013073.a	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT00910000147855	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288.c #29	ENSGT00390000003919.e #30	ENSGT00910000147289	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35
Drill	MODERN SPECIES	1152							ENSMLEG00000034203	FAT3 (ENSMLEG00000038737) #15	MTNR1B (ENSMLEG00000039776) #16	SLC36A4 (ENSMLEG00000030119) #17	DEUP1 (ENSMLEG00000037342) #18	SMCO4 (ENSMLEG00000022536) #19	ENSMLEG00000001837	CEP295 (ENSMLEG00000033140) #20	TAF1D (ENSMLEG00000039639) #21	C11orf54 (ENSMLEG00000035235) #22	MED17 (ENSMLEG00000027939) #23	ENSMLEG00000035673	VSTM5 (ENSMLEG00000027079) #24	HEPHL1 (ENSMLEG00000038476) #25	PANX1 (ENSMLEG00000041168) #26	IZUMO1R (ENSMLEG00000033707) #27	GPR83 (ENSMLEG00000032323) #28
Sooty mangabey	MODERN SPECIES	216								ENSCATG00000037733 #15	MTNR1B (ENSCATG00000033084) #16	SLC36A4 (ENSCATG00000034032) #17	DEUP1 (ENSCATG00000035569) #18	SMCO4 (ENSCATG00000020187) #19	ENSCATG00000020258	CEP295 (ENSCATG00000038930) #20	TAF1D (ENSCATG00000042343) #21	C11orf54 (ENSCATG00000035750) #22	MED17 (ENSCATG00000008395) #23	ENSCATG00000039624	VSTM5 (ENSCATG00000040111) #24	HEPHL1 (ENSCATG00000041665) #25	PANX1 (ENSCATG00000002907) #26	GPR83 (ENSCATG00000009776) #28	MRE11 (ENSCATG00000040989) #29	ANKRD49 (ENSCATG00000032771) #30	ENSCATG00000019568	C11orf97 (ENSCATG00000029479) #31	PIWIL4 (ENSCATG00000030289) #33	AMOTL1 (ENSCATG00000035778) #34
Vervet Monkey	MODERN SPECIES		ENSCSAG00000003564	ENSCSAG00000003560	ENSCSAG00000003550	NAALAD2 (ENSCSAG00000003546) #13	CHORDC1 (ENSCSAG00000003537) #14	ENSCSAG00000000609	FAT3 (ENSCSAG00000003512) #15	ENSCSAG00000003478	MTNR1B (ENSCSAG00000003473) #16	SLC36A4 (ENSCSAG00000003469) #17	DEUP1 (ENSCSAG00000003465) #18	SMCO4 (ENSCSAG00000000608) #19	ENSCSAG00000003461	CEP295 (ENSCSAG00000003445) #20	TAF1D (ENSCSAG00000003431) #21	C11orf54 (ENSCSAG00000003429) #22	MED17 (ENSCSAG00000003426) #23	VSTM5 (ENSCSAG00000003423) #24	HEPHL1 (ENSCSAG00000003418) #25	PANX1 (ENSCSAG00000003406) #26	IZUMO1R (ENSCSAG00000003400) #27	GPR83 (ENSCSAG00000003397) #28	MRE11 (ENSCSAG00000003391) #29	ANKRD49 (ENSCSAG00000003379) #30	C11orf97 (ENSCSAG00000003377) #31	FUT4 (ENSCSAG00000000607) #32	PIWIL4 (ENSCSAG00000003360) #33	AMOTL1 (ENSCSAG00000003315) #34	CWC15 (ENSCSAG00000003299) #35	KDM4D (ENSCSAG00000003295) #36	KDM4E (ENSCSAG00000003292)
Rhinopithecus	ANCESTRAL SPECIES	449								ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00390000013073.a.b	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24
Black snub-nosed monkey	MODERN SPECIES	2476										ENSRBIG00000037835 #17	DEUP1 (ENSRBIG00000039067) #18	SMCO4 (ENSRBIG00000021343) #19	ENSRBIG00000042168	CEP295 (ENSRBIG00000039647) #20	TAF1D (ENSRBIG00000031274) #21	C11orf54 (ENSRBIG00000030764) #22	MED17 (ENSRBIG00000040881) #23	VSTM5 (ENSRBIG00000036607) #24	ENSRBIG00000022813
Golden snub-nosed monkey	MODERN SPECIES	3179							ENSRROG00000028601 #15	MTNR1B (ENSRROG00000016923) #16	SLC36A4 (ENSRROG00000029629) #17	DEUP1 (ENSRROG00000014120) #18	SMCO4 (ENSRROG00000028523) #19	ENSRROG00000044461	ENSRROG00000043758	CEP295 (ENSRROG00000040195) #20	TAF1D (ENSRROG00000036707) #21	C11orf54 (ENSRROG00000038456) #22	MED17 (ENSRROG00000033837) #23	VSTM5 (ENSRROG00000008637) #24
Platyrrhini	ANCESTRAL SPECIES	3	ENSGT00940000163778	ENSGT00940000160005.A.i	ENSGT00940000163440	ENSGT00940000163419.j	ENSGT00940000165665	ENSGT00940000163213.a.b	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174.s.a.a.a #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288.c #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36	ENSGT00940000165078
Cebidae	ANCESTRAL SPECIES		ENSGT01030000234598.b.a.b.k.a #12	ENSGT00940000163778	ENSGT00940000160005.A.i	ENSGT00940000163440	ENSGT00940000163419.j	ENSGT00940000163213.a.b	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174.s.a.a.a #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288.c #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158.e.b #34	ENSGT00940000160158.e.a #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36
Cebidae_a	ANCESTRAL SPECIES	73	ENSGT01030000234598.b.a.b.k.a #12	ENSGT00940000163778	ENSGT00940000160005.A.i	ENSGT00940000163440	ENSGT00940000163419.j	ENSGT00940000163213.a.b	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174.s.a.a.a #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288.c #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158.e.b #34
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	241									ENSCCAG00000019974	FAT3 (ENSCCAG00000029618) #15	SLC36A4 (ENSCCAG00000029908) #17	DEUP1 (ENSCCAG00000025548) #18	SMCO4 (ENSCCAG00000019420) #19	CEP295 (ENSCCAG00000025065) #20	TAF1D (ENSCCAG00000018289) #21	ENSCCAG00000025059 #22	MED17 (ENSCCAG00000034414) #23	VSTM5 (ENSCCAG00000021584) #24	HEPHL1 (ENSCCAG00000030082) #25	PANX1 (ENSCCAG00000007465) #26	IZUMO1R (ENSCCAG00000021617) #27	GPR83 (ENSCCAG00000028755) #28	MRE11 (ENSCCAG00000013972) #29	ANKRD49 (ENSCCAG00000027797) #30	C11orf97 (ENSCCAG00000029425) #31	FUT4 (ENSCCAG00000013593) #32	ENSCCAG00000021211	PIWIL4 (ENSCCAG00000017581) #33	ENSCCAG00000036203 #34
Capuchin	MODERN SPECIES	42	ENSCCAG00000035298	ITPKB (ENSCCAG00000017443)	STUM (ENSCCAG00000027365)	PARP1 (ENSCCAG00000033484)	LIN9 (ENSCCAG00000024893)	MIXL1 (ENSCCAG00000030603)	ACBD3 (ENSCCAG00000029038)	ENSCCAG00000021678	SDE2 (ENSCCAG00000033106)	ENSCCAG00000024966	PYCR2 (ENSCCAG00000029202)	ENSCCAG00000030395	TMEM63A (ENSCCAG00000022581)	EPHX1 (ENSCCAG00000024699)	SRP9 (ENSCCAG00000034464)	ENSCCAG00000025068 #22	ENAH (ENSCCAG00000026712)	LBR (ENSCCAG00000018433)	ENSCCAG00000017821	DNAH14 (ENSCCAG00000023187)	ENSCCAG00000023109	CNIH3 (ENSCCAG00000018443)	WDR26 (ENSCCAG00000035904)	CNIH4 (ENSCCAG00000037449)	NVL (ENSCCAG00000037416)	DEGS1 (ENSCCAG00000037018)	FBXO28 (ENSCCAG00000019791)	TP53BP2 (ENSCCAG00000029817)	CAPN2 (ENSCCAG00000021862)	CAPN8 (ENSCCAG00000030926)	SUSD4 (ENSCCAG00000002755)
Bolivian squirrel monkey	MODERN SPECIES	188					ENSSBOG00000020924	ENSSBOG00000030835	NAALAD2 (ENSSBOG00000025125) #13	ENSSBOG00000023416 #14	FAT3 (ENSSBOG00000020939) #15	MTNR1B (ENSSBOG00000020942) #16	SLC36A4 (ENSSBOG00000022344) #17	DEUP1 (ENSSBOG00000026759) #18	SMCO4 (ENSSBOG00000011877) #19	CEP295 (ENSSBOG00000019495) #20	TAF1D (ENSSBOG00000027735) #21	C11orf54 (ENSSBOG00000032062) #22	MED17 (ENSSBOG00000003072) #23	VSTM5 (ENSSBOG00000025938) #24	HEPHL1 (ENSSBOG00000034453) #25	PANX1 (ENSSBOG00000009703) #26	IZUMO1R (ENSSBOG00000021841) #27	GPR83 (ENSSBOG00000024347) #28	MRE11 (ENSSBOG00000016957) #29	ANKRD49 (ENSSBOG00000034549) #30	C11orf97 (ENSSBOG00000017516) #31	FUT4 (ENSSBOG00000020691) #32	PIWIL4 (ENSSBOG00000024534) #33
Mas night monkey	MODERN SPECIES	1013	ENSANAG00000025882	ENSANAG00000023802	ENSANAG00000028974	NAALAD2 (ENSANAG00000021262) #13	CHORDC1 (ENSANAG00000024414) #14	ENSANAG00000023865	FAT3 (ENSANAG00000026539) #15	MTNR1B (ENSANAG00000021351) #16	SLC36A4 (ENSANAG00000028156) #17	DEUP1 (ENSANAG00000031473) #18	SMCO4 (ENSANAG00000015761) #19	ENSANAG00000029028	CEP295 (ENSANAG00000032138) #20	TAF1D (ENSANAG00000022083) #21	ENSANAG00000029536	C11orf54 (ENSANAG00000033486) #22	MED17 (ENSANAG00000032438) #23	VSTM5 (ENSANAG00000022799) #24	HEPHL1 (ENSANAG00000030738) #25	PANX1 (ENSANAG00000030398) #26	IZUMO1R (ENSANAG00000030382) #27	GPR83 (ENSANAG00000021555) #28	ENSANAG00000010232	MRE11 (ENSANAG00000020274) #29	ANKRD49 (ENSANAG00000030055) #30	C11orf97 (ENSANAG00000023746) #31	FUT4 (ENSANAG00000011701) #32	PIWIL4 (ENSANAG00000031191) #33	AMOTL1 (ENSANAG00000033879) #34
Tarsier	MODERN SPECIES	1298														ENSTSYG00000014254 ##20	TAF1D (ENSTSYG00000014258) #21	CUNH11orf54 (ENSTSYG00000000521) #22	MED17 (ENSTSYG00000009789) #23	VSTM5 (ENSTSYG00000012692) #24
Strepsirrhini	ANCESTRAL SPECIES	6	ENSGT00940000157301.b	ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36	ENSGT01030000234592.B
Lemuriformes	ANCESTRAL SPECIES	13	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT00940000160005.A.l	ENSGT00940000163440	ENSGT00940000160005.A.k	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36	ENSGT01030000234592.B
Lemuriformes_a	ANCESTRAL SPECIES	147									ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000164415	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152.a #36
Coquerels sifaka	MODERN SPECIES	694								ENSPCOG00000026263	FAT3 (ENSPCOG00000014723) #15	MTNR1B (ENSPCOG00000011958) #16	SLC36A4 (ENSPCOG00000023046) #17	DEUP1 (ENSPCOG00000006729) #18	SMCO4 (ENSPCOG00000026449) #19	CEP295 (ENSPCOG00000004897) #20	TAF1D (ENSPCOG00000018649) #21	C11orf54 (ENSPCOG00000017307) #22	MED17 (ENSPCOG00000018257) #23
Greater bamboo lemur	MODERN SPECIES	414								ENSPSMG00000021720	FAT3 (ENSPSMG00000021711) #15	MTNR1B (ENSPSMG00000021687) #16	SLC36A4 (ENSPSMG00000021672) #17	DEUP1 (ENSPSMG00000021664) #18	SMCO4 (ENSPSMG00000021635) #19	CEP295 (ENSPSMG00000021623) #20	TAF1D (ENSPSMG00000021588) #21	C11orf54 (ENSPSMG00000021573) #22	MED17 (ENSPSMG00000021504) #23	VSTM5 (ENSPSMG00000021436) #24	ENSPSMG00000021429	ENSPSMG00000021414	HEPHL1 (ENSPSMG00000021408) #25	PANX1 (ENSPSMG00000021384) #26	IZUMO1R (ENSPSMG00000021373) #27	GPR83 (ENSPSMG00000021362) #28	ENSPSMG00000021347	MRE11 (ENSPSMG00000021306) #29	ANKRD49 (ENSPSMG00000021206) #30	C11orf97 (ENSPSMG00000021201) #31	FUT4 (ENSPSMG00000021197) #32	PIWIL4 (ENSPSMG00000021185) #33	AMOTL1 (ENSPSMG00000021101) #34
Mouse lemur	MODERN SPECIES	27	CTSC (ENSMICG00000002445) #7	GRM5 (ENSMICG00000002451) #8	TYR (ENSMICG00000037850) #10	NOX4 (ENSMICG00000014398) #11	ENSMICG00000042150 #12	ENSMICG00000013580	NAALAD2 (ENSMICG00000015630) #13	ENSMICG00000015646 #14	ENSMICG00000031389 #15	MTNR1B (ENSMICG00000043189) #16	SLC36A4 (ENSMICG00000033063) #17	DEUP1 (ENSMICG00000017876) #18	SMCO4 (ENSMICG00000017877) #19	CEP295 (ENSMICG00000017878) #20	TAF1D (ENSMICG00000034947) #21	C11orf54 (ENSMICG00000028510) #22	ENSMICG00000014697 #23	VSTM5 (ENSMICG00000045625) #24	HEPHL1 (ENSMICG00000006401) #25	PANX1 (ENSMICG00000006408) #26	IZUMO1R (ENSMICG00000031112) #27	GPR83 (ENSMICG00000028902) #28	ENSMICG00000027455 #29	ANKRD49 (ENSMICG00000013505) #30	C11orf97 (ENSMICG00000043866) #31	FUT4 (ENSMICG00000043071) #32	PIWIL4 (ENSMICG00000006375) #33	ENSMICG00000041717	AMOTL1 (ENSMICG00000001878) #34	ENSMICG00000036230 #14	CWC15 (ENSMICG00000042790) #35
Bushbaby	MODERN SPECIES	116	GRM5 (ENSOGAG00000003814) #8	ENSOGAG00000024204 #10	NOX4 (ENSOGAG00000012261) #11	FOLH1 (ENSOGAG00000002014) #12	NAALAD2 (ENSOGAG00000011836) #13	CHORDC1 (ENSOGAG00000003523) #14	ENSOGAG00000030993	ENSOGAG00000015055	FAT3 (ENSOGAG00000033165) #15	MTNR1B (ENSOGAG00000031018) #16	SLC36A4 (ENSOGAG00000006967) #17	DEUP1 (ENSOGAG00000007123) #18	SMCO4 (ENSOGAG00000016748) #19	CEP295 (ENSOGAG00000002516) #20	ENSOGAG00000002521 #21	C11orf54 (ENSOGAG00000002523) #22	MED17 (ENSOGAG00000002525) #23	VSTM5 (ENSOGAG00000030661) #24	ENSOGAG00000026605	ENSOGAG00000033509	ENSOGAG00000034157	HEPHL1 (ENSOGAG00000015952) #25	PANX1 (ENSOGAG00000015294) #26	IZUMO1R (ENSOGAG00000002522) #27	GPR83 (ENSOGAG00000002520) #28	MRE11 (ENSOGAG00000012154) #29	ANKRD49 (ENSOGAG00000012155) #30	C11orf97 (ENSOGAG00000033264) #31	FUT4 (ENSOGAG00000025107) #32	PIWIL4 (ENSOGAG00000012156) #33	AMOTL1 (ENSOGAG00000003989) #34
Laurasiatheria	ANCESTRAL SPECIES	1	ENSGT00940000162409	ENSGT00940000160005.A	ENSGT00940000163778	ENSGT00940000163440	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162741.i.b	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00910000147289	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36
Laurasiatheria_a	ANCESTRAL SPECIES	1	ENSGT00940000162409	ENSGT00940000160005.B	ENSGT00940000160005.A	ENSGT00940000163778	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162741.i.b	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00910000147289	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36
Artiodactyla	ANCESTRAL SPECIES	1	ENSGT00940000160005.A	ENSGT00940000162409	ENSGT00940000160005.B	ENSGT00940000163858	ENSGT00940000163778	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162741.i.b	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36	ENSGT01030000234592.B
Suina	ANCESTRAL SPECIES	5	ENSGT00940000162409	ENSGT00940000163440	ENSGT00940000160005.B	ENSGT00940000163858	ENSGT00940000163778	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162741.i.b	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36	ENSGT01030000234592.B
Pig	MODERN SPECIES	17	ENSSSCG00000014930	ENSSSCG00000049020	ENSSSCG00000014929	TRIM77 (ENSSSCG00000024966)	NAALAD2 (ENSSSCG00000014933) #13	ENSSSCG00000061267	CHORDC1 (ENSSSCG00000014934) #14	ENSSSCG00000014935 #15	ENSSSCG00000034113	MTNR1B (ENSSSCG00000014939) #16	SLC36A4 (ENSSSCG00000024933) #17	DEUP1 (ENSSSCG00000014943) #18	SMCO4 (ENSSSCG00000057259) #19	CEP295 (ENSSSCG00000014946) #20	TAF1D (ENSSSCG00000038682) #21	C11orf54 (ENSSSCG00000014948) #22	MED17 (ENSSSCG00000014949) #23	VSTM5 (ENSSSCG00000014950) #24	ENSSSCG00000041237	HEPHL1 (ENSSSCG00000030461) #25	PANX1 (ENSSSCG00000032360) #26	IZUMO1R (ENSSSCG00000014952) #27	GPR83 (ENSSSCG00000022490) #28	MRE11 (ENSSSCG00000014955) #29	ANKRD49 (ENSSSCG00000014956) #30	C11orf97 (ENSSSCG00000014957) #31	ENSSSCG00000062029 #32	PIWIL4 (ENSSSCG00000014959) #33	AMOTL1 (ENSSSCG00000014960) #34	CWC15 (ENSSSCG00000014961) #35	ENSSSCG00000031376 #36
Chacoan peccary	MODERN SPECIES	30	FOLH1 (ENSCWAG00000003143) #12	ENSCWAG00000003010	ENSCWAG00000002978	ENSCWAG00000002962	ENSCWAG00000002828	TRIM77 (ENSCWAG00000002794)	NAALAD2 (ENSCWAG00000002648) #13	CHORDC1 (ENSCWAG00000002615) #14	FAT3 (ENSCWAG00000002509) #15	MTNR1B (ENSCWAG00000002467) #16	SLC36A4 (ENSCWAG00000002448) #17	DEUP1 (ENSCWAG00000002415) #18	ENSCWAG00000002405 #19	CEP295 (ENSCWAG00000002365) #20	TAF1D (ENSCWAG00000002303) #21	C11orf54 (ENSCWAG00000002241) #22	MED17 (ENSCWAG00000002193) #23	VSTM5 (ENSCWAG00000002173) #24	HEPHL1 (ENSCWAG00000002145) #25	PANX1 (ENSCWAG00000002126) #26	IZUMO1R (ENSCWAG00000002109) #27	GPR83 (ENSCWAG00000002075) #28	NACA2 (ENSCWAG00000002065)	MRE11 (ENSCWAG00000002025) #29	ANKRD49 (ENSCWAG00000002004) #30	ENSCWAG00000001993 #31	ENSCWAG00000001987 #32	PIWIL4 (ENSCWAG00000001925) #33	AMOTL1 (ENSCWAG00000001874) #34	CWC15 (ENSCWAG00000001851) #35	ENSCWAG00000001839 #36
Artiodactyla_a	ANCESTRAL SPECIES	1	ENSGT00940000160005.A	ENSGT00940000162409	ENSGT00940000160005.B	ENSGT00940000163858	ENSGT00940000163778	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162741.i.b	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36	ENSGT01030000234592.B
Camelidae	DUPLICATION
Camelidae	ANCESTRAL SPECIES	32	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT00940000163440	ENSGT00940000160005.B	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214.o #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36	ENSGT01030000234592.B
Arabian camel	MODERN SPECIES	1	NOX4 (ENSCDRG00005009765) #11	FOLH1 (ENSCDRG00005010235) #12	ENSCDRG00005010410	ENSCDRG00005010499	ENSCDRG00005011110	UBTFL1 (ENSCDRG00005011226)	NAALAD2 (ENSCDRG00005011284) #13	CHORDC1 (ENSCDRG00005011505) #14	FAT3 (ENSCDRG00005011626) #15	MTNR1B (ENSCDRG00005011909) #16	SLC36A4 (ENSCDRG00005011954) #17	DEUP1 (ENSCDRG00005012090) #18	ENSCDRG00005012157 #19	ENSCDRG00005012255 #20	TAF1D (ENSCDRG00005013529) #21	ENSCDRG00005013599 #22	MED17 (ENSCDRG00005014246) #23	VSTM5 (ENSCDRG00005014480) #24	ENSCDRG00005014573	HEPHL1 (ENSCDRG00005014678) #25	PANX1 (ENSCDRG00005014832) #26	IZUMO1R (ENSCDRG00005014865) #27	GPR83 (ENSCDRG00005014899) #28	MRE11 (ENSCDRG00005014968) #29	ANKRD49 (ENSCDRG00005015366) #30	C11orf97 (ENSCDRG00005015394) #31	FUT4 (ENSCDRG00005015443) #32	PIWIL4 (ENSCDRG00005015533) #33	AMOTL1 (ENSCDRG00005015718) #34	CWC15 (ENSCDRG00005015943) #35	ENSCDRG00005015979 #36
Alpaca	MODERN SPECIES	1680														ENSVPAG00000009318 #20	TAF1D (ENSVPAG00000009321) #21	C11orf54 (ENSVPAG00000009322) #22	MED17 (ENSVPAG00000009324) #23	VSTM5 (ENSVPAG00000009326) #24	HEPHL1 (ENSVPAG00000009327) #25	PANX1 (ENSVPAG00000009330) #26
Camelidae	ANCESTRAL SPECIES																	ENSGT00390000017214.p #22
Arabian camel	MODERN SPECIES	11	ENSCDRG00005010708	ENSCDRG00005010544	MMRN1 (ENSCDRG00005010505)	CCSER1 (ENSCDRG00005010415)	ENSCDRG00005010381	GRID2 (ENSCDRG00005009950)	ENSCDRG00005009873	ATOH1 (ENSCDRG00005009854)	SMARCAD1 (ENSCDRG00005009588)	HPGDS (ENSCDRG00005009472)	PDLIM5 (ENSCDRG00005008970)	BMPR1B (ENSCDRG00005008805)	ENSCDRG00005008779	UNC5C (ENSCDRG00005008588)	PDHA2 (ENSCDRG00005008550)	ENSCDRG00005008544 #22	STPG2 (ENSCDRG00005008261)	RAP1GDS1 (ENSCDRG00005006817)	TSPAN5 (ENSCDRG00005006719)	ENSCDRG00005006550	METAP1 (ENSCDRG00005006507)	ADH5 (ENSCDRG00005006442)	ADH4 (ENSCDRG00005006348)	ADH6 (ENSCDRG00005006293)	ENSCDRG00005018374	ENSCDRG00005018280	ENSCDRG00005018187	C4orf17 (ENSCDRG00005018162)	TRMT10A (ENSCDRG00005018130)	MTTP (ENSCDRG00005018066)	C4orf54 (ENSCDRG00005018047)
Artiodactyla_b	ANCESTRAL SPECIES	1	ENSGT00940000160005.A	ENSGT00940000162409	ENSGT00940000160005.B	ENSGT00940000163858	ENSGT00940000163778	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162741.i.b	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36	ENSGT01030000234592.B
Cetacea	DUPLICATION
Cetacea	DUPLICATION
Cetacea	ANCESTRAL SPECIES	4	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a #12	ENSGT00940000163440.g	ENSGT00940000162409	ENSGT00940000160005.A	ENSGT00940000163778	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214.q.a #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152.n.a #36	ENSGT01030000234592.B
Odontoceti	ANCESTRAL SPECIES	4	ENSGT01030000234598.b.a.b.k.a #12	ENSGT00940000162409.i	ENSGT00940000163858	ENSGT00940000162409.j	ENSGT00940000160005.A	ENSGT00940000163778	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214.q.a #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152.n.a #36	ENSGT01030000234592.B
Sperm whale	MODERN SPECIES	7	ENSPCTG00005006039	ENSPCTG00005005824	TRIM77 (ENSPCTG00005005756)	NAALAD2 (ENSPCTG00005005669) #13	CHORDC1 (ENSPCTG00005005523) #14	ENSPCTG00005005478	ENSPCTG00005005441	FAT3 (ENSPCTG00005005410) #15	MTNR1B (ENSPCTG00005005362) #16	SLC36A4 (ENSPCTG00005005320) #17	DEUP1 (ENSPCTG00005005239) #18	ENSPCTG00005005223 #19	ENSPCTG00005005216 #19	CEP295 (ENSPCTG00005005109) #20	TAF1D (ENSPCTG00005004998) #21	C16H11orf54 (ENSPCTG00005004783) #22	MED17 (ENSPCTG00005004711) #23	VSTM5 (ENSPCTG00005004678) #24	ENSPCTG00005004592	ENSPCTG00005004559	HEPHL1 (ENSPCTG00005004530) #25	PANX1 (ENSPCTG00005004492) #26	IZUMO1R (ENSPCTG00005004480) #27	GPR83 (ENSPCTG00005004449) #28	ENSPCTG00005004432	MRE11 (ENSPCTG00005004248) #29	ANKRD49 (ENSPCTG00005012473) #30	C11orf97 (ENSPCTG00005012423) #31	FUT4 (ENSPCTG00005012401) #32	PIWIL4 (ENSPCTG00005012159) #33	AMOTL1 (ENSPCTG00005012114) #34
Odontoceti_a	ANCESTRAL SPECIES	4	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a #12	ENSGT00940000162409.i	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000156185.s	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214.q.a #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084.w #35	ENSGT00940000162152.n.a #36	ENSGT01030000234592.B	ENSGT00950000183168.A
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a #12	ENSGT00940000162409.i	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000156185.s.a	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214.q.a #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000153309.d.g	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084.w #35	ENSGT00940000162152.n.a.b #36	ENSGT01030000234592.B
Monodontidae	ANCESTRAL SPECIES	2	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT00940000162409.i	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000156185.s.a	ENSGT00390000013276.r	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214.q.a #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000153309.d.g	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084.w #35	ENSGT00940000162152.n.a.b #36	ENSGT01030000234592.B
Narwhal	DUPLICATION
Narwhal	MODERN SPECIES	314	CTSC (ENSMMNG00015014542) #7	GRM5 (ENSMMNG00015014498) #8	TYR (ENSMMNG00015014453) #10	NOX4 (ENSMMNG00015021151) #11	NAALAD2 (ENSMMNG00015020956) #13	CHORDC1 (ENSMMNG00015020880) #14	FAT3 (ENSMMNG00015020732) #15	MTNR1B (ENSMMNG00015020672) #16	SLC36A4 (ENSMMNG00015020630) #17	DEUP1 (ENSMMNG00015020581) #18	SMCO4 (ENSMMNG00015020556) #19	ENSMMNG00015020542	ENSMMNG00015020536	CEP295 (ENSMMNG00015020472) #20	TAF1D (ENSMMNG00015020380) #21	ENSMMNG00015020304 #22	MED17 (ENSMMNG00015020217) #23	VSTM5 (ENSMMNG00015020170) #24	HEPHL1 (ENSMMNG00015020099) #25	PANX1 (ENSMMNG00015020072) #26	IZUMO1R (ENSMMNG00015020047) #27	GPR83 (ENSMMNG00015020020) #28	MRE11 (ENSMMNG00015019911) #29	ANKRD49 (ENSMMNG00015019870) #30	FUT4 (ENSMMNG00015019851) #32	PIWIL4 (ENSMMNG00015019794) #33	AMOTL1 (ENSMMNG00015019700) #34	ENSMMNG00015019674 #35	ENSMMNG00015019662 #36	ENDOD1 (ENSMMNG00015019650)	SESN3 (ENSMMNG00015019600)
Narwhal	MODERN SPECIES	311	STN1 (ENSMMNG00015013736)	SH3PXD2A (ENSMMNG00015013681)	NEURL1 (ENSMMNG00015013659)	CALHM3 (ENSMMNG00015013638)	CALHM1 (ENSMMNG00015013618)	CALHM2 (ENSMMNG00015013608)	PDCD11 (ENSMMNG00015013562)	ATP5MK (ENSMMNG00015013543)	TAF5 (ENSMMNG00015013528)	PCGF6 (ENSMMNG00015013501)	INA (ENSMMNG00015013479)	ENSMMNG00015013465	CNNM2 (ENSMMNG00015013452)	AS3MT (ENSMMNG00015013420)	BORCS7 (ENSMMNG00015013396)	ENSMMNG00015013382 #22	CYP17A1 (ENSMMNG00015013335)	ENSMMNG00015013292	SFXN2 (ENSMMNG00015013273)	ARL3 (ENSMMNG00015013259)	TRIM8 (ENSMMNG00015013233)	SUFU (ENSMMNG00015013204)	ACTR1A (ENSMMNG00015013180)	MFSD13A (ENSMMNG00015013161)	C10orf95 (ENSMMNG00015013148)	CUEDC2 (ENSMMNG00015013134)	FBXL15 (ENSMMNG00015013118)	PSD (ENSMMNG00015013097)	NFKB2 (ENSMMNG00015013070)	GBF1 (ENSMMNG00015013050)	PITX3 (ENSMMNG00015013029)
Beluga whale	MODERN SPECIES	87					ENSDLEG00000011110 #13	CHORDC1 (ENSDLEG00000011081) #14	FAT3 (ENSDLEG00000010985) #15	MTNR1B (ENSDLEG00000010941) #16	SLC36A4 (ENSDLEG00000010919) #17	ENSDLEG00000010889 #18	SMCO4 (ENSDLEG00000010877) #19	ENSDLEG00000010859	ENSDLEG00000010853	CEP295 (ENSDLEG00000009788) #20	TAF1D (ENSDLEG00000009654) #21	ENSDLEG00000009480 #22	MED17 (ENSDLEG00000009424) #23	VSTM5 (ENSDLEG00000009404) #24	ENSDLEG00000009395	HEPHL1 (ENSDLEG00000009188) #25	PANX1 (ENSDLEG00000009144) #26	IZUMO1R (ENSDLEG00000008834) #27	GPR83 (ENSDLEG00000008769) #28	MRE11 (ENSDLEG00000008671) #29	ANKRD49 (ENSDLEG00000008640) #30	FUT4 (ENSDLEG00000008615) #32	PIWIL4 (ENSDLEG00000008525) #33	AMOTL1 (ENSDLEG00000008425) #34	CWC15 (ENSDLEG00000008381) #35	ENDOD1 (ENSDLEG00000008365)	SESN3 (ENSDLEG00000008313)
Vaquita	MODERN SPECIES	19	GRM5 (ENSPSNG00000016691) #8	TYR (ENSPSNG00000016603) #10	NOX4 (ENSPSNG00000016374) #11	ENSPSNG00000016293	ENSPSNG00000015989	ENSPSNG00000015913	ENSPSNG00000015854 #36	NAALAD2 (ENSPSNG00000015587) #13	CHORDC1 (ENSPSNG00000015361) #14	FAT3 (ENSPSNG00000015176) #15	MTNR1B (ENSPSNG00000014997) #16	SLC36A4 (ENSPSNG00000014913) #17	DEUP1 (ENSPSNG00000014794) #18	ENSPSNG00000014662	CEP295 (ENSPSNG00000014268) #20	ENSPSNG00000013981 #22	TAF1D (ENSPSNG00000013901) #21	MED17 (ENSPSNG00000013775) #23	VSTM5 (ENSPSNG00000013668) #24	ENSPSNG00000013594	HEPHL1 (ENSPSNG00000013322) #25	PANX1 (ENSPSNG00000013265) #26	IZUMO1R (ENSPSNG00000013201) #27	GPR83 (ENSPSNG00000013087) #28	MRE11 (ENSPSNG00000012783) #29	ANKRD49 (ENSPSNG00000012741) #30	ENSPSNG00000012714 #32	PIWIL4 (ENSPSNG00000012478) #33	AMOTL1 (ENSPSNG00000012299) #34	ENSPSNG00000012253 #35	ENSPSNG00000012220 #36
Dolphin	MODERN SPECIES	1628														ENSTTRG00000001138 #20	TAF1D (ENSTTRG00000001139) #21	C11orf54 (ENSTTRG00000001140) #22	MED17 (ENSTTRG00000001141) #23
Blue whale	MODERN SPECIES	19	ENSBMSG00010000316	ENSBMSG00010000282	TRIM77 (ENSBMSG00010008740)	NAALAD2 (ENSBMSG00010008680) #13	CHORDC1 (ENSBMSG00010008638) #14	ENSBMSG00010008616	ENSBMSG00010008607	FAT3 (ENSBMSG00010008516) #15	MTNR1B (ENSBMSG00010008461) #16	SLC36A4 (ENSBMSG00010008445) #17	DEUP1 (ENSBMSG00010008417) #18	SMCO4 (ENSBMSG00010008401) #19	ENSBMSG00010008389	CEP295 (ENSBMSG00010008344) #20	TAF1D (ENSBMSG00010008284) #21	ENSBMSG00010008251 #22	MED17 (ENSBMSG00010008219) #23	ENSBMSG00010008190	ENSBMSG00010008183	HEPHL1 (ENSBMSG00010008172) #25	PANX1 (ENSBMSG00010008164) #26	IZUMO1R (ENSBMSG00010008153) #27	GPR83 (ENSBMSG00010008125) #28	MRE11 (ENSBMSG00010008081) #29	ANKRD49 (ENSBMSG00010008053) #30	ENSBMSG00010008035 #36	C11orf97 (ENSBMSG00010008028) #31	ENSBMSG00010008018 #32	ENSBMSG00010008013	ENSBMSG00010008011 #33	AMOTL1 (ENSBMSG00010007997) #34
Cetacea	ANCESTRAL SPECIES	2	ENSGT00390000015971	ENSGT00940000156678	ENSGT00950000182802.A.ab.a.a.a.a.b.a.b.b	ENSGT00940000157711	ENSGT00940000153451.a.b	ENSGT00940000154775.c.b	ENSGT00940000156390	ENSGT00440000033408.a	ENSGT01000000221977	ENSGT00940000158809	ENSGT00940000157567	ENSGT00390000009751	ENSGT01090000259987.a.b	ENSGT00940000157169	ENSGT00950000183214.a.b.a.a	ENSGT00390000017214.q.b #22	ENSGT00940000154926	ENSGT00940000156952	ENSGT00940000166073.b	ENSGT00940000164101.a	ENSGT00940000154453.a.b.b	ENSGT00940000156105	ENSGT00390000005508.b	ENSGT00940000153498.B.a	ENSGT00940000154811.A	ENSGT00940000156350	ENSGT00940000157002	ENSGT00550000074836	ENSGT01030000234637.a.b.b.r	ENSGT00940000153661.a.a	ENSGT00390000014429.b
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00390000015971	ENSGT00940000156678	ENSGT00950000182802.A.ab.a.a.a.a.b.a.b.b	ENSGT00940000157711	ENSGT00940000153451.a.b	ENSGT00940000154775.c.b	ENSGT00940000156390	ENSGT00440000033408.a	ENSGT01000000221977	ENSGT00940000158809	ENSGT00940000157567	ENSGT00390000009751	ENSGT01090000259987.a.b	ENSGT00940000157169	ENSGT00950000183214.a.b.a.a	ENSGT00390000017214.q.b #22	ENSGT00940000154926	ENSGT00940000156952	ENSGT00940000166073.b	ENSGT00940000164101.a	ENSGT00940000154453.a.b.b	ENSGT00940000156105	ENSGT00390000005508.b	ENSGT00940000153498.B.a	ENSGT00940000154811.A	ENSGT00940000156350	ENSGT00940000157002	ENSGT00550000074836	ENSGT01030000234637.a.b.b.r	ENSGT00940000153661.a.a	ENSGT00390000014429.b
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00390000015971	ENSGT00940000156678	ENSGT00950000182802.A.ab.a.a.a.a.b.a.b.b	ENSGT00940000157711	ENSGT00940000153451.a.b	ENSGT00940000154775.c.b	ENSGT00940000156390	ENSGT00440000033408.a	ENSGT01000000221977	ENSGT00940000158809.i	ENSGT00940000157567	ENSGT00390000009751	ENSGT01090000259987.a.b	ENSGT00940000157169	ENSGT00950000183214.a.b.a.a	ENSGT00390000017214.q.b #22	ENSGT00940000154926	ENSGT00940000156952	ENSGT00940000166073.b	ENSGT00940000164101.a	ENSGT00940000154453.a.b.b	ENSGT00940000156105	ENSGT00390000005508.b	ENSGT00940000153498.B.a	ENSGT00940000154811.A	ENSGT00940000156350	ENSGT00940000157002	ENSGT00550000074836	ENSGT01030000234637.a.b.b.r	ENSGT00940000153661.a.a	ENSGT00390000014429.b
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT00390000015971	ENSGT00940000156678	ENSGT00950000182802.A.ab.a.a.a.a.b.a.b.b	ENSGT00940000157711	ENSGT00940000153451.a.b	ENSGT00940000154775.c.b	ENSGT00940000156390	ENSGT00440000033408.a	ENSGT01000000221977	ENSGT00940000158809.i	ENSGT00940000157567	ENSGT00390000009751	ENSGT01090000259987.a.b	ENSGT00940000157169	ENSGT00950000183214.a.b.a.a	ENSGT00390000017214.q.b #22	ENSGT00940000154926	ENSGT00940000156952	ENSGT00940000166073.b	ENSGT00940000164101.a	ENSGT00940000154453.a.b.b	ENSGT00940000156105	ENSGT00390000005508.b	ENSGT00940000153498.B.a	ENSGT00940000154811.A	ENSGT00940000156350	ENSGT00940000157002	ENSGT00550000074836	ENSGT01030000234637.a.b.b.r	ENSGT00940000153661.a.a	ENSGT00390000014429.b
Vaquita	MODERN SPECIES	11	ENSPSNG00000008481	SKIDA1 (ENSPSNG00000008497)	ENSPSNG00000008537	ENSPSNG00000008581	NEBL (ENSPSNG00000008689)	PLXDC2 (ENSPSNG00000008936)	ENSPSNG00000009028	MALRD1 (ENSPSNG00000009104)	ARL5B (ENSPSNG00000009165)	ENSPSNG00000009320	ENSPSNG00000009393	ITGB1 (ENSPSNG00000009566)	NRP1 (ENSPSNG00000009847)	PARD3 (ENSPSNG00000010628)	ENSPSNG00000014206	ENSPSNG00000014262 #22	CUL2 (ENSPSNG00000014334)	CREM (ENSPSNG00000014684)	ENSPSNG00000016206	ENSPSNG00000016245	CCNY (ENSPSNG00000016274)	ENSPSNG00000016308	APBB1IP (ENSPSNG00000016358)	ENSPSNG00000016582	PDSS1 (ENSPSNG00000016619)	ABI1 (ENSPSNG00000016723)	ACBD5 (ENSPSNG00000016966)	MASTL (ENSPSNG00000017353)	YME1L1 (ENSPSNG00000017478)	ENSPSNG00000017613	ENSPSNG00000017653
Monodontidae	ANCESTRAL SPECIES	22	ENSGT00940000156042	ENSGT00390000015971	ENSGT00940000156678	ENSGT00950000182802.A.ab.a.a.a.a.b.a.b.b	ENSGT00940000157711	ENSGT00940000153451.a.b	ENSGT00940000156390	ENSGT00440000033408.a	ENSGT01000000221977	ENSGT00940000158809.i	ENSGT00940000157567	ENSGT00390000009751	ENSGT01090000259987.a.b	ENSGT00940000157169	ENSGT00950000183214.a.b.a.a	ENSGT00390000017214.q.b #22	ENSGT00940000154926	ENSGT00940000156952	ENSGT00940000166073.b	ENSGT00940000164101.a	ENSGT00940000154453.a.b.b	ENSGT00940000156105	ENSGT00390000005508.b	ENSGT00940000153498.B.a	ENSGT00940000154811.A	ENSGT00940000156350	ENSGT00940000157002	ENSGT00550000074836	ENSGT00940000153661.a.a	ENSGT01030000234637.a.b.b.r	ENSGT00390000014429.b
Narwhal	MODERN SPECIES	308	ENSMMNG00015014486	MLLT10 (ENSMMNG00015014594)	SKIDA1 (ENSMMNG00015014859)	ENSMMNG00015014909	NEBL (ENSMMNG00015014944)	ENSMMNG00015014981	PLXDC2 (ENSMMNG00015015001)	ENSMMNG00015015028	MALRD1 (ENSMMNG00015015069)	ARL5B (ENSMMNG00015015129)	ENSMMNG00015015193	ITGB1 (ENSMMNG00015015280)	NRP1 (ENSMMNG00015015364)	PARD3 (ENSMMNG00015015482)	ENSMMNG00015015621	ENSMMNG00015015634 #22	CUL2 (ENSMMNG00015015681)	CREM (ENSMMNG00015015981)	ENSMMNG00015016421	ENSMMNG00015016440	CCNY (ENSMMNG00015016474)	APBB1IP (ENSMMNG00015016536)	PDSS1 (ENSMMNG00015016593)	ABI1 (ENSMMNG00015016765)	ACBD5 (ENSMMNG00015016999)	MASTL (ENSMMNG00015017123)	YME1L1 (ENSMMNG00015017184)	ENSMMNG00015017231	ANKRD26 (ENSMMNG00015017325)	CCDC3 (ENSMMNG00015017596)	ENSMMNG00015015568
Beluga whale	MODERN SPECIES	22	MLLT10 (ENSDLEG00000005121)	SKIDA1 (ENSDLEG00000005109)	NEBL (ENSDLEG00000005042)	NEBL (ENSDLEG00000005016)	ENSDLEG00000005011	PLXDC2 (ENSDLEG00000005004)	ENSDLEG00000004998	MALRD1 (ENSDLEG00000004988)	ARL5B (ENSDLEG00000004980)	ENSDLEG00000004974	ENSDLEG00000004949	ITGB1 (ENSDLEG00000004934)	NRP1 (ENSDLEG00000004921)	ENSDLEG00000004913	PARD3 (ENSDLEG00000004836)	ENSDLEG00000004816 #22	CUL2 (ENSDLEG00000004800)	CREM (ENSDLEG00000004793)	ENSDLEG00000004786	ENSDLEG00000004780	CCNY (ENSDLEG00000004766)	APBB1IP (ENSDLEG00000004755)	ENSDLEG00000004733	PDSS1 (ENSDLEG00000004718)	ABI1 (ENSDLEG00000004700)	ACBD5 (ENSDLEG00000004686)	MASTL (ENSDLEG00000004669)	ENSDLEG00000004666	YME1L1 (ENSDLEG00000004656)	ANKRD26 (ENSDLEG00000004565)	ENSDLEG00000004527
Blue whale	MODERN SPECIES	11	ENSBMSG00010004104	MLLT10 (ENSBMSG00010004128)	SKIDA1 (ENSBMSG00010004180)	ENSBMSG00010004190	ENSBMSG00010004203	NEBL (ENSBMSG00010004247)	ENSBMSG00010004405	PLXDC2 (ENSBMSG00010004417)	ENSBMSG00010004460	MALRD1 (ENSBMSG00010004478)	ARL5B (ENSBMSG00010004528)	ENSBMSG00010004573	ITGB1 (ENSBMSG00010004703)	NRP1 (ENSBMSG00010004765)	PARD3 (ENSBMSG00010004796)	ENSBMSG00010004829 #22	CUL2 (ENSBMSG00010004845)	CREM (ENSBMSG00010004910)	ENSBMSG00010005098	ENSBMSG00010005102	CCNY (ENSBMSG00010005110)	ENSBMSG00010005118	APBB1IP (ENSBMSG00010005134)	ENSBMSG00010005151	PDSS1 (ENSBMSG00010005161)	ABI1 (ENSBMSG00010005189)	ACBD5 (ENSBMSG00010005242)	MASTL (ENSBMSG00010005274)	YME1L1 (ENSBMSG00010005370)	ENSBMSG00010005060	ENSBMSG00010005091
Cetacea	ANCESTRAL SPECIES																	ENSGT00390000017214.r #22
Odontoceti	ANCESTRAL SPECIES																	ENSGT00390000017214.r #22
Odontoceti_a	ANCESTRAL SPECIES																	ENSGT00390000017214.r #22
Odontoceti_b	ANCESTRAL SPECIES																	ENSGT00390000017214.r #22
Vaquita	MODERN SPECIES	7	STN1 (ENSPSNG00000019572)	SH3PXD2A (ENSPSNG00000019335)	NEURL1 (ENSPSNG00000019212)	CALHM3 (ENSPSNG00000019156)	CALHM1 (ENSPSNG00000019125)	CALHM2 (ENSPSNG00000019092)	PDCD11 (ENSPSNG00000019025)	ENSPSNG00000018977	TAF5 (ENSPSNG00000018939)	PCGF6 (ENSPSNG00000018827)	INA (ENSPSNG00000018790)	NT5C2 (ENSPSNG00000018760)	CNNM2 (ENSPSNG00000018654)	AS3MT (ENSPSNG00000018610)	BORCS7 (ENSPSNG00000018573)	ENSPSNG00000018533 #22	CYP17A1 (ENSPSNG00000018242)	ENSPSNG00000018106	SFXN2 (ENSPSNG00000018035)	ARL3 (ENSPSNG00000017986)	ENSPSNG00000017958	TRIM8 (ENSPSNG00000017907)	SUFU (ENSPSNG00000017847)	ACTR1A (ENSPSNG00000017727)	MFSD13A (ENSPSNG00000017652)	CUEDC2 (ENSPSNG00000017566)	FBXL15 (ENSPSNG00000017495)	PSD (ENSPSNG00000017329)	NFKB2 (ENSPSNG00000017232)	GBF1 (ENSPSNG00000017028)	PITX3 (ENSPSNG00000016915)
Pecora	ANCESTRAL SPECIES	13	ENSGT00940000163858.f	ENSGT00940000162409.l	ENSGT00940000160005.A	ENSGT00940000163858.e.a.a	ENSGT00940000163778	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162741.i.b	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26
Yarkand deer	MODERN SPECIES	11	ENSCHYG00000000475	ENSCHYG00000000439	TRIM77 (ENSCHYG00000000430)	NAALAD2 (ENSCHYG00000000349) #13	CHORDC1 (ENSCHYG00000000310) #14	ENSCHYG00000000275	ENSCHYG00000000270	ENSCHYG00000000250	FAT3 (ENSCHYG00000000159) #15	MTNR1B (ENSCHYG00000000114) #16	SLC36A4 (ENSCHYG00000000088) #17	DEUP1 (ENSCHYG00000000039) #18	CEP295 (ENSCHYG00000020879) #20	TAF1D (ENSCHYG00000020606) #21	ENSCHYG00000020575	C11orf54 (ENSCHYG00000020500) #22	MED17 (ENSCHYG00000020141) #23	VSTM5 (ENSCHYG00000020086) #24	HEPHL1 (ENSCHYG00000019944) #25	PANX1 (ENSCHYG00000019895) #26	ENSCHYG00000019868	ENSCHYG00000019742
Percora_a	ANCESTRAL SPECIES	16	ENSGT01030000234598.b.a.b.k.a #12	ENSGT00940000162409.k.b	ENSGT00940000162409.k.a.b	ENSGT00940000160005.A.q	ENSGT00940000163778	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162741.i.b	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26
Bovidae	ANCESTRAL SPECIES	16	ENSGT00940000160005.A.r	ENSGT00940000162409.k.a.a.b	ENSGT00940000163858.f	ENSGT00940000163858.e.a.a	ENSGT00940000163778	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162741.i.b	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26
Bovinae	ANCESTRAL SPECIES	27	ENSGT00940000160005.B	ENSGT00940000163858.e.b.a	ENSGT00940000162409.l	ENSGT00940000162409.k.a.b	ENSGT00940000163858.e.a.a	ENSGT00940000163778	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00960000192099	ENSGT00940000157994 #25	ENSGT00940000153972.A #26
Bos	ANCESTRAL SPECIES	42	ENSGT00940000163858.e.b.a.b	ENSGT00940000162409.l	ENSGT00940000162409.k.a.a.a.b	ENSGT00940000162409.k.a.b	ENSGT00940000163858.e.a.a	ENSGT00940000163778	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00960000192099	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT01030000234542.b.a.a.a.b.a.a.b
Bos_b	ANCESTRAL SPECIES	10	ENSGT00940000162409.l	ENSGT00940000163858.e.b.a.b	ENSGT01030000234531.A.b.b.b.i.a.a.a.b.b.a	ENSGT00940000162409.k.a.b	ENSGT00940000163858.e.a.a	ENSGT00940000163778	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00960000192099	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT01030000234542.b.a.a.a.b.a.a.b
Cow	MODERN SPECIES	21	ENSBTAG00000052563	TRIM64 (ENSBTAG00000034940)	ENSBTAG00000052850	TRIM77 (ENSBTAG00000016293)	NAALAD2 (ENSBTAG00000000284) #13	CHORDC1 (ENSBTAG00000013615) #14	ENSBTAG00000050093	ENSBTAG00000049527	FAT3 (ENSBTAG00000004081) #15	MTNR1B (ENSBTAG00000050009) #16	SLC36A4 (ENSBTAG00000008530) #17	DEUP1 (ENSBTAG00000035110) #18	SMCO4 (ENSBTAG00000033621) #19	CEP295 (ENSBTAG00000001902) #20	TAF1D (ENSBTAG00000003545) #21	C29H11orf54 (ENSBTAG00000003550) #22	MED17 (ENSBTAG00000003552) #23	VSTM5 (ENSBTAG00000002751) #24	ENSBTAG00000049484	HEPHL1 (ENSBTAG00000022960) #25	PANX1 (ENSBTAG00000012010) #26	ENSBTAG00000046335	ENSBTAG00000054019
Bos_a	ANCESTRAL SPECIES	103				ENSGT00940000162409.k.a.b	ENSGT00940000163858.e.a.a	ENSGT00940000163778	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT01030000234542.b.a.a.a.b.a.a.b
Wild yak	MODERN SPECIES	457								FAT3 (ENSBMUG00000017018) #15	ENSBMUG00000017039	MTNR1B (ENSBMUG00000017049) #16	SLC36A4 (ENSBMUG00000017061) #17	DEUP1 (ENSBMUG00000017087) #18	SMCO4 (ENSBMUG00000017105) #19	CEP295 (ENSBMUG00000017204) #20	TAF1D (ENSBMUG00000017333) #21	C11orf54 (ENSBMUG00000017380) #22	MED17 (ENSBMUG00000017419) #23	VSTM5 (ENSBMUG00000017438) #24	ENSBMUG00000017446	HEPHL1 (ENSBMUG00000017459) #25	PANX1 (ENSBMUG00000017468) #26	ENSBMUG00000017474
Domestic yak	MODERN SPECIES	21	ENSBGRG00000015144	TRIM77 (ENSBGRG00000015244)	NAALAD2 (ENSBGRG00000015428) #13	CHORDC1 (ENSBGRG00000016176) #14	ENSBGRG00000016452	ENSBGRG00000016466	ENSBGRG00000016503	ENSBGRG00000016538 #15	MTNR1B (ENSBGRG00000016629) #16	ENSBGRG00000016658	SLC36A4 (ENSBGRG00000016674) #17	DEUP1 (ENSBGRG00000016749) #18	SMCO4 (ENSBGRG00000017125) #19	CEP295 (ENSBGRG00000017172) #20	TAF1D (ENSBGRG00000017699) #21	C11orf54 (ENSBGRG00000017763) #22	MED17 (ENSBGRG00000018240) #23	VSTM5 (ENSBGRG00000018604) #24	HEPHL1 (ENSBGRG00000018644) #25	PANX1 (ENSBGRG00000018761) #26	ENSBGRG00000018859	ENSBGRG00000018874	ENSBGRG00000019055	ENSBGRG00000019142
American bison	DUPLICATION
American bison	MODERN SPECIES	3270								ENSBBBG00000013640	FAT3 (ENSBBBG00000013625) #15	SLC36A4 (ENSBBBG00000002797) #17	DEUP1 (ENSBBBG00000002788) #18	ENSBBBG00000013505	SMCO4 (ENSBBBG00000013502) #19	CEP295 (ENSBBBG00000013492) #20	TAF1D (ENSBBBG00000013429) #21	ENSBBBG00000013421 #22	MED17 (ENSBBBG00000013353) #23	VSTM5 (ENSBBBG00000002709) #24	ENSBBBG00000013316	HEPHL1 (ENSBBBG00000013308) #25	PANX1 (ENSBBBG00000013290) #26	ENSBBBG00000001620
American bison	MODERN SPECIES	3177				ENSBBBG00000010613	CHMP7 (ENSBBBG00000010611)	R3HCC1 (ENSBBBG00000010600)	LOXL2 (ENSBBBG00000025500)	ENTPD4 (ENSBBBG00000025429)	SLC25A37 (ENSBBBG00000025366)	ENSBBBG00000025361	STC1 (ENSBBBG00000025351)	ENSBBBG00000025331	ADAM28 (ENSBBBG00000006709)	ADAMDEC1 (ENSBBBG00000007853)	ADAM7 (ENSBBBG00000007763)	ENSBBBG00000025051 #22
Caprinae	ANCESTRAL SPECIES	29	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT00940000163858.e.a.a	ENSGT00940000163778	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162741.i.b	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26
Goat	MODERN SPECIES	21	ENSCHIG00000023687 #8	TYR (ENSCHIG00000004892) #10	NOX4 (ENSCHIG00000021611) #11	FOLH1 (ENSCHIG00000013522) #12	ENSCHIG00000023324	TRIM77 (ENSCHIG00000019554)	NAALAD2 (ENSCHIG00000017338) #13	CHORDC1 (ENSCHIG00000013507) #14	ENSCHIG00000010579 #15	MTNR1B (ENSCHIG00000019999) #16	SLC36A4 (ENSCHIG00000025083) #17	DEUP1 (ENSCHIG00000018338) #18	SMCO4 (ENSCHIG00000002094) #19	CEP295 (ENSCHIG00000017706) #20	TAF1D (ENSCHIG00000026408) #21	C11orf54 (ENSCHIG00000016176) #22	MED17 (ENSCHIG00000014403) #23	VSTM5 (ENSCHIG00000025656) #24	HEPHL1 (ENSCHIG00000019344) #25	PANX1 (ENSCHIG00000011075) #26
Siberian musk deer	MODERN SPECIES	105															MED17 (ENSMMSG00000019337) #23	ENSMMSG00000019294 #22
Laurasiatheria_b	ANCESTRAL SPECIES	1	ENSGT00940000162409	ENSGT00940000160005.A	ENSGT00940000160005.B	ENSGT00940000163778	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162741.i.b	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00910000147289	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36
Carnivora	ANCESTRAL SPECIES	21	ENSGT01030000234598.b.a.b.k.a #12	ENSGT00940000162409	ENSGT00940000160005.B	ENSGT00940000163778	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162741.i.b	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00910000147289	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36
Caniformia	ANCESTRAL SPECIES	17	ENSGT00940000157301.b	ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823.a #31	ENSGT00910000147289	ENSGT00520000058823.b #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35
Canidae	ANCESTRAL SPECIES	17	ENSGT01030000234598.b.a.b.k.a #12	ENSGT00940000162409	ENSGT00940000160005.B.g	ENSGT00940000163778	ENSGT00940000160005.B.h	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00950000183152.A.w.a	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a.h #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061.i.a #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00910000147289	ENSGT00520000058823.b #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36
Canis_lupus	ANCESTRAL SPECIES	21	ENSGT00940000162409	ENSGT00940000160005.B.g	ENSGT00940000163778	ENSGT00940000160005.B.h	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00950000183152.A.w.a	ENSGT00940000153314.a.b.a	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a.h #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061.i.a #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00910000147289	ENSGT00520000058823.b #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152.y #36
Dog	MODERN SPECIES	13	TRIM77 (ENSCAFG00845024925)	ENSCAFG00845024803	NAALAD2 (ENSCAFG00845024559) #13	CHORDC1 (ENSCAFG00845024317) #14	ENSCAFG00845024138	ENSCAFG00845023968	ENSCAFG00845023937	ENSCAFG00845023311 #15	MTNR1B (ENSCAFG00845023202) #16	SLC36A4 (ENSCAFG00845023100) #17	ENSCAFG00845022822	SMCO4 (ENSCAFG00845022789) #19	DEUP1 (ENSCAFG00845022176) #18	CEP295 (ENSCAFG00845021425) #20	ENSCAFG00845021166 #21	C11orf54 (ENSCAFG00845020928) #22	MED17 (ENSCAFG00845020829) #23	ENSCAFG00845020781 #24	HEPHL1 (ENSCAFG00845020630) #25	PANX1 (ENSCAFG00845020558) #26	IZUMO1R (ENSCAFG00845020509) #27	GPR83 (ENSCAFG00845020430) #28	MRE11 (ENSCAFG00845020248) #29	ANKRD49 (ENSCAFG00845020201) #30	ENSCAFG00845020169	ENSCAFG00845020114 #31	FUT4 (ENSCAFG00845020086) #32	PIWIL4 (ENSCAFG00845019963) #33	AMOTL1 (ENSCAFG00845019406) #34	CWC15 (ENSCAFG00845019309) #35	ENSCAFG00845019286 #36
Dingo	MODERN SPECIES	245	TRIM77 (ENSCAFG00020016740)	ENSCAFG00020016712	NAALAD2 (ENSCAFG00020016699) #13	CHORDC1 (ENSCAFG00020016695) #14	ENSCAFG00020016685	ENSCAFG00020016674	ENSCAFG00020016670	ENSCAFG00020016668	FAT3 (ENSCAFG00020016652) #15	MTNR1B (ENSCAFG00020016646) #16	SLC36A4 (ENSCAFG00020016637) #17	ENSCAFG00020016631 #18	ENSCAFG00020016621 #18	SMCO4 (ENSCAFG00020016620) #19	CEP295 (ENSCAFG00020016598) #20	C11orf54 (ENSCAFG00020016576) #22	MED17 (ENSCAFG00020016574) #23	VSTM5 (ENSCAFG00020016572) #24	HEPHL1 (ENSCAFG00020016564) #25	PANX1 (ENSCAFG00020016561) #26	IZUMO1R (ENSCAFG00020016546) #27	GPR83 (ENSCAFG00020016538) #28	MRE11 (ENSCAFG00020016532) #29	ENSCAFG00020016530	ANKRD49 (ENSCAFG00020016528) #30	FUT4 (ENSCAFG00020016526) #32	PIWIL4 (ENSCAFG00020016521) #33	AMOTL1 (ENSCAFG00020016518) #34	CWC15 (ENSCAFG00020016515) #35	ENSCAFG00020016513 #36	ENSCAFG00020016510 #36
Red fox	MODERN SPECIES	12	FOLH1 (ENSVVUG00000009321) #12	ENSVVUG00000009346	ENSVVUG00000009370	TRIM77 (ENSVVUG00000009448)	ENSVVUG00000009492	NAALAD2 (ENSVVUG00000009504) #13	CHORDC1 (ENSVVUG00000009574) #14	ENSVVUG00000009594	ENSVVUG00000009615	ENSVVUG00000009648	ENSVVUG00000009657	FAT3 (ENSVVUG00000009801) #15	SLC36A4 (ENSVVUG00000011262) #17	DEUP1 (ENSVVUG00000011271) #18	CEP295 (ENSVVUG00000011351) #20	CUNH11orf54 (ENSVVUG00000011455) #22	MED17 (ENSVVUG00000011459) #23	VSTM5 (ENSVVUG00000011473) #24	ENSVVUG00000011475	HEPHL1 (ENSVVUG00000011481) #25	PANX1 (ENSVVUG00000011503) #26	ENSVVUG00000011513 #27	GPR83 (ENSVVUG00000011530) #28	MRE11 (ENSVVUG00000011537) #29	ANKRD49 (ENSVVUG00000011561) #30	ENSVVUG00000011564	ENSVVUG00000011567 #31	FUT4 (ENSVVUG00000011573) #32	PIWIL4 (ENSVVUG00000011577) #33	AMOTL1 (ENSVVUG00000011602) #34	ENSVVUG00000011644
Caniformia_b	ANCESTRAL SPECIES	3	ENSGT00940000157301.b	ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823.a #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36	ENSGT01030000234592.B
Ursidae	ANCESTRAL SPECIES	15	ENSGT00390000000303	ENSGT00940000157301.b	ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b.m #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823.a #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152.u #36	ENSGT01030000234592.B
Ursus	ANCESTRAL SPECIES	157								ENSGT01030000234598.b.a.b.k.b.m #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152.u.a.a #36	ENSGT00940000162152.u.b #36	ENSGT01030000234592.B
American black bear	MODERN SPECIES	1111												DEUP1 (ENSUAMG00000000299) #18	SMCO4 (ENSUAMG00000000286) #19	CEP295 (ENSUAMG00000000077) #20	TAF1D (ENSUAMG00000026880) #21	C11orf54 (ENSUAMG00000026879) #22	MED17 (ENSUAMG00000026834) #23	VSTM5 (ENSUAMG00000026829) #24
Polar bear	MODERN SPECIES	149	VPS26B (ENSUMAG00000006148)	THYN1 (ENSUMAG00000006152)	ACAD8 (ENSUMAG00000006162)	ENSUMAG00000006196	GLB1L3 (ENSUMAG00000006221)	GLB1L2 (ENSUMAG00000006270)	B3GAT1 (ENSUMAG00000006581)	NAALAD2 (ENSUMAG00000006599) #13	CHORDC1 (ENSUMAG00000006613) #14	FAT3 (ENSUMAG00000006731) #15	SLC36A4 (ENSUMAG00000006788) #17	DEUP1 (ENSUMAG00000006791) #18	SMCO4 (ENSUMAG00000006807) #19	CEP295 (ENSUMAG00000006832) #20	TAF1D (ENSUMAG00000006891) #21	C11orf54 (ENSUMAG00000006893) #22	MED17 (ENSUMAG00000006899) #23	VSTM5 (ENSUMAG00000006903) #24	HEPHL1 (ENSUMAG00000006908) #25	PANX1 (ENSUMAG00000006930) #26	IZUMO1R (ENSUMAG00000006944) #27	GPR83 (ENSUMAG00000007059) #28	MRE11 (ENSUMAG00000007075) #29	ANKRD49 (ENSUMAG00000007092) #30	PIWIL4 (ENSUMAG00000007117) #33	AMOTL1 (ENSUMAG00000007154) #34	CWC15 (ENSUMAG00000007161) #35	ENSUMAG00000007170 #36	ENSUMAG00000007175 #36	ENDOD1 (ENSUMAG00000007178)	SESN3 (ENSUMAG00000007186)
Giant Panda	MODERN SPECIES	18	RAB38 (ENSAMEG00000015103)	CTSC (ENSAMEG00000015113) #7	GRM5 (ENSAMEG00000024209) #8	TYR (ENSAMEG00000005958) #10	NOX4 (ENSAMEG00000005207) #11	ENSAMEG00000005259 #12	ENSAMEG00000007477 #13	ENSAMEG00000007577 #14	ENSAMEG00000028153 #14	FAT3 (ENSAMEG00000004298) #15	SLC36A4 (ENSAMEG00000015861) #17	DEUP1 (ENSAMEG00000015849) #18	SMCO4 (ENSAMEG00000020097) #19	CEP295 (ENSAMEG00000012848) #20	TAF1D (ENSAMEG00000012858) #21	C11orf54 (ENSAMEG00000012862) #22	MED17 (ENSAMEG00000012892) #23	VSTM5 (ENSAMEG00000023824) #24	HEPHL1 (ENSAMEG00000012916) #25	PANX1 (ENSAMEG00000011923) #26	IZUMO1R (ENSAMEG00000011928) #27	GPR83 (ENSAMEG00000007680) #28	MRE11 (ENSAMEG00000007626) #29	ANKRD49 (ENSAMEG00000028517) #30	C11orf97 (ENSAMEG00000024321) #31	FUT4 (ENSAMEG00000007616) #32	PIWIL4 (ENSAMEG00000007580) #33	ENSAMEG00000001911	AMOTL1 (ENSAMEG00000011381) #34	CWC15 (ENSAMEG00000011392) #35	ENSAMEG00000025796 #36
Mustelinae	ANCESTRAL SPECIES	25	ENSGT00940000157301.b	ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823.a #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152 #36	ENSGT01030000234592.B
American mink	MODERN SPECIES	6	GRM5 (ENSNVIG00000004087) #8	ENSNVIG00000004099	ENSNVIG00000004112 #8	TYR (ENSNVIG00000004130) #10	NOX4 (ENSNVIG00000004160) #11	FOLH1 (ENSNVIG00000004536) #12	NAALAD2 (ENSNVIG00000004661) #13	CHRD1 (ENSNVIG00000004738) #14	FAT3 (ENSNVIG00000004831) #15	MTNR1B (ENSNVIG00000004926) #16	SLC36A4 (ENSNVIG00000004976) #17	DEUP1 (ENSNVIG00000005001) #18	ENSNVIG00000005094 #19	CEP295 (ENSNVIG00000005105) #20	TAF1D (ENSNVIG00000005172) #21	C11orf54 (ENSNVIG00000005179) #22	MED17 (ENSNVIG00000005216) #23	VSTM5 (ENSNVIG00000005272) #24	HEPHL1 (ENSNVIG00000005290) #25	PANX1 (ENSNVIG00000005347) #26	FOLR4 (ENSNVIG00000005363) #27	GPR83 (ENSNVIG00000005397) #28	MRE11 (ENSNVIG00000005415) #29	ANKRD49 (ENSNVIG00000005521) #30	C11orf97 (ENSNVIG00000005537) #31	FUT4 (ENSNVIG00000005553) #32	PIWIL4 (ENSNVIG00000005560) #33	AMOTL1 (ENSNVIG00000005602) #34	CWC15 (ENSNVIG00000005664) #35	ENSNVIG00000005671 #36	ENSNVIG00000005674 #36
Ferret	MODERN SPECIES	259	TYR (ENSMPUG00000010381) #10	NOX4 (ENSMPUG00000010385) #11	FOLH1 (ENSMPUG00000010390) #12	NAALAD2 (ENSMPUG00000010401) #13	CHORDC1 (ENSMPUG00000010548) #14	ENSMPUG00000018689	ENSMPUG00000018690	FAT3 (ENSMPUG00000010556) #15	ENSMPUG00000010572	ENSMPUG00000010574	SLC36A4 (ENSMPUG00000010579) #17	ENSMPUG00000010589 #18	ENSMPUG00000010626	CEP295 (ENSMPUG00000010628) #20	TAF1D (ENSMPUG00000010659) #21	C11orf54 (ENSMPUG00000010663) #22	MED17 (ENSMPUG00000010667) #23	VSTM5 (ENSMPUG00000010671) #24	ENSMPUG00000018691
Felidae	ANCESTRAL SPECIES		ENSGT01030000234598.b.a.b.k.a #12	ENSGT00940000162409	ENSGT00940000160005.B	ENSGT00940000163778	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162741.i.b	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152.s #36	ENSGT00940000162152.t #36
Panthera	ANCESTRAL SPECIES	23	ENSGT01030000234598.b.a.b.k.a #12	ENSGT00940000162409	ENSGT00940000160005.B	ENSGT00940000163778	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162741.i.b	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084.y.b #35	ENSGT00940000162152.s #36	ENSGT01030000234592.B
Panthera_a	ANCESTRAL SPECIES	24	ENSGT01030000234598.b.a.b.k.a #12	ENSGT00940000162409	ENSGT00940000160005.B	ENSGT00940000163778	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162741.i.b	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084.y.a.a #35	ENSGT00940000162152.s.a #36	ENSGT01030000234592.B
lion	MODERN SPECIES	10	ENSPLOG00000015181	ENSPLOG00000014641	TRIM77 (ENSPLOG00000014478)	ENSPLOG00000014439	NAALAD2 (ENSPLOG00000014022) #13	CHORDC1 (ENSPLOG00000013727) #14	FAT3 (ENSPLOG00000013276) #15	ENSPLOG00000013143	MTNR1B (ENSPLOG00000013104) #16	ENSPLOG00000013078	SLC36A4 (ENSPLOG00000012924) #17	DEUP1 (ENSPLOG00000012693) #18	SMCO4 (ENSPLOG00000012661) #19	CEP295 (ENSPLOG00000012597) #20	TAF1D (ENSPLOG00000012430) #21	C11orf54 (ENSPLOG00000012138) #22	MED17 (ENSPLOG00000012011) #23	VSTM5 (ENSPLOG00000011932) #24	ENSPLOG00000011835	HEPHL1 (ENSPLOG00000011658) #25	PANX1 (ENSPLOG00000011611) #26	IZUMO1R (ENSPLOG00000011548) #27	GPR83 (ENSPLOG00000011474) #28	MRE11 (ENSPLOG00000011192) #29	ANKRD49 (ENSPLOG00000011102) #30	C11orf97 (ENSPLOG00000011026) #31	FUT4 (ENSPLOG00000010997) #32	PIWIL4 (ENSPLOG00000018141) #33	AMOTL1 (ENSPLOG00000017940) #34	ENSPLOG00000017871 #35	KDM4D (ENSPLOG00000017815) #36
leopard	MODERN SPECIES	17	FOLH1 (ENSPPRG00000017997) #12	ENSPPRG00000013571	TRIM77 (ENSPPRG00000012936)	UBTFL1 (ENSPPRG00000015347)	NAALAD2 (ENSPPRG00000012456) #13	CHORDC1 (ENSPPRG00000009494) #14	ENSPPRG00000008409	FAT3 (ENSPPRG00000007707) #15	ENSPPRG00000005678	MTNR1B (ENSPPRG00000004216) #16	SLC36A4 (ENSPPRG00000004146) #17	DEUP1 (ENSPPRG00000003992) #18	SMCO4 (ENSPPRG00000015134) #19	CEP295 (ENSPPRG00000002239) #20	TAF1D (ENSPPRG00000000132) #21	C11orf54 (ENSPPRG00000022726) #22	MED17 (ENSPPRG00000014853) #23	VSTM5 (ENSPPRG00000012542) #24	HEPHL1 (ENSPPRG00000012328) #25	PANX1 (ENSPPRG00000012085) #26	IZUMO1R (ENSPPRG00000011844) #27	GPR83 (ENSPPRG00000011279) #28	MRE11 (ENSPPRG00000010728) #29	ANKRD49 (ENSPPRG00000008157) #30	C11orf97 (ENSPPRG00000007748) #31	FUT4 (ENSPPRG00000014970) #32	PIWIL4 (ENSPPRG00000007432) #33	AMOTL1 (ENSPPRG00000007186) #34	ENSPPRG00000005063 #35	ENSPPRG00000014918 #36	ENSPPRG00000014906 #36
Tiger	MODERN SPECIES	123	ENSPTIG00000017086	ENSPTIG00000017277	TRIM77 (ENSPTIG00000017304)	UBTFL1 (ENSPTIG00000009976)	NAALAD2 (ENSPTIG00000017405) #13	CHORDC1 (ENSPTIG00000017806) #14	ENSPTIG00000017905	ENSPTIG00000018013 #15	ENSPTIG00000018103 #15	MTNR1B (ENSPTIG00000018222) #16	SLC36A4 (ENSPTIG00000018252) #17	DEUP1 (ENSPTIG00000018347) #18	SMCO4 (ENSPTIG00000010019) #19	CEP295 (ENSPTIG00000018669) #20	TAF1D (ENSPTIG00000019674) #21	C11orf54 (ENSPTIG00000019745) #22	MED17 (ENSPTIG00000019841) #23	VSTM5 (ENSPTIG00000020099) #24	HEPHL1 (ENSPTIG00000020126) #25	PANX1 (ENSPTIG00000020245) #26	IZUMO1R (ENSPTIG00000020317) #27	GPR83 (ENSPTIG00000020384) #28	MRE11 (ENSPTIG00000020482) #29	ANKRD49 (ENSPTIG00000020842) #30	C11orf97 (ENSPTIG00000020857) #31	PIWIL4 (ENSPTIG00000020931) #33	AMOTL1 (ENSPTIG00000021027) #34	ENSPTIG00000021149 #35	KDM4D (ENSPTIG00000021192) #36	ENDOD1 (ENSPTIG00000021253)	SESN3 (ENSPTIG00000000066)
Cat	MODERN SPECIES	241	FOLH1 (ENSFCAG00000007740) #12	ENSFCAG00000008521	ENSFCAG00000043585	ENSFCAG00000018518	ENSFCAG00000049822	ENSFCAG00000037392	NAALAD2 (ENSFCAG00000025290) #13	CHORDC1 (ENSFCAG00000019389) #14	FAT3 (ENSFCAG00000022245) #15	ENSFCAG00000030530	MTNR1B (ENSFCAG00000003193) #16	SLC36A4 (ENSFCAG00000029109) #17	DEUP1 (ENSFCAG00000006337) #18	CEP295 (ENSFCAG00000028136) #20	TAF1D (ENSFCAG00000012473) #21	CD1H11orf54 (ENSFCAG00000012474) #22	MED17 (ENSFCAG00000012475) #23	VSTM5 (ENSFCAG00000023848) #24	HEPHL1 (ENSFCAG00000014735) #25	PANX1 (ENSFCAG00000004470) #26	IZUMO1R (ENSFCAG00000003023) #27	GPR83 (ENSFCAG00000010910) #28	MRE11 (ENSFCAG00000025219) #29	ANKRD49 (ENSFCAG00000042246) #30	CD1H11orf97 (ENSFCAG00000036846) #31	FUT4 (ENSFCAG00000029438) #32	PIWIL4 (ENSFCAG00000010914) #33	AMOTL1 (ENSFCAG00000010915) #34	CWC15 (ENSFCAG00000007826) #35	ENSFCAG00000045743 #36	ENSFCAG00000043892 #36
Laurasiatheria_c	ANCESTRAL SPECIES	9	ENSGT01030000234598.b.a.b.k.a #12	ENSGT00940000162409	ENSGT00940000163858	ENSGT00940000163440	ENSGT00940000160005.A	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162741.i.b	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT01030000234590.A.a.b	ENSGT00940000155511	ENSGT00950000183380	ENSGT00950000183022.a.a.a	ENSGT01100000263557.B	ENSGT00940000162537	ENSGT00940000153313.A	ENSGT00510000048154	ENSGT00940000158872	ENSGT00940000156517	ENSGT00390000001015	ENSGT00940000160895	ENSGT00510000050180
Chiroptera	ANCESTRAL SPECIES	5	ENSGT00940000162409	ENSGT00940000160005.A	ENSGT00940000163440	ENSGT00940000163858	ENSGT00940000163778	ENSGT00940000160005.B	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT01030000234590.A.a.b	ENSGT00940000155511	ENSGT00950000183022.a.a.a	ENSGT01100000263557.B	ENSGT00940000162537	ENSGT00940000153313.A	ENSGT00510000048154	ENSGT00940000158872	ENSGT00940000156517	ENSGT00390000001015	ENSGT00940000160895	ENSGT00510000050180	ENSGT00940000155124
Microchiroptera	ANCESTRAL SPECIES	2	ENSGT01030000234598.b.a.b.k.a #12	ENSGT00940000162409	ENSGT00940000163858	ENSGT00940000163440	ENSGT00940000160005.A	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00390000002414.ob	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT01030000234590.A.a.b	ENSGT00940000155511	ENSGT00950000183022.a.a.a	ENSGT01100000263557.B	ENSGT00940000162537	ENSGT00940000153313.A	ENSGT00510000048154	ENSGT00940000158872	ENSGT00940000156517	ENSGT00390000001015	ENSGT00940000160895	ENSGT00510000050180	ENSGT00940000155124
Greater horseshoe bat	MODERN SPECIES	2	ENSRFEG00010017954	ENSRFEG00010018032	TRIM77 (ENSRFEG00010018089)	ENSRFEG00010018158	ENSRFEG00010018488	NAALAD2 (ENSRFEG00010018581) #13	ENSRFEG00010018698 #14	ENSRFEG00010018842	FAT3 (ENSRFEG00010018861) #15	MTNR1B (ENSRFEG00010018917) #16	SLC36A4 (ENSRFEG00010018971) #17	DEUP1 (ENSRFEG00010019047) #18	ENSRFEG00010019320 #19	CEP295 (ENSRFEG00010019371) #20	TAF1D (ENSRFEG00010019531) #21	C11orf54 (ENSRFEG00010019588) #22	MED17 (ENSRFEG00010019676) #23	VSTM5 (ENSRFEG00010019719) #24	ENSRFEG00010019751	HEPHL1 (ENSRFEG00010019856) #25	PANX1 (ENSRFEG00010020003) #26	IZUMO1R (ENSRFEG00010020055) #27	GPR83 (ENSRFEG00010020113) #28	MRE11 (ENSRFEG00010020173) #29	ANKRD49 (ENSRFEG00010020343) #30	C11orf97 (ENSRFEG00010020369) #31	FUT4 (ENSRFEG00010020392) #32	PIWIL4 (ENSRFEG00010020425) #33	AMOTL1 (ENSRFEG00010020674) #34	CWC15 (ENSRFEG00010020742) #35	ENSRFEG00010020755 #36
Microbat	MODERN SPECIES	1041					ENSMLUG00000025560	ENSMLUG00000025510	FAT3 (ENSMLUG00000015758) #15	MTNR1B (ENSMLUG00000011618) #16	ENSMLUG00000001084	SLC36A4 (ENSMLUG00000005983) #17	ENSMLUG00000030695	DEUP1 (ENSMLUG00000015504) #18	SMCO4 (ENSMLUG00000006975) #19	CEP295 (ENSMLUG00000011383) #20	ENSMLUG00000011431 #21	C11orf54 (ENSMLUG00000011443) #22	MED17 (ENSMLUG00000011467) #23	VSTM5 (ENSMLUG00000029725) #24	ENSMLUG00000022473	HEPHL1 (ENSMLUG00000008248) #25	PANX1 (ENSMLUG00000000460) #26	IZUMO1R (ENSMLUG00000000463) #27	GPR83 (ENSMLUG00000016975) #28	MRE11 (ENSMLUG00000002006) #29	ANKRD49 (ENSMLUG00000002017) #30	C11orf97 (ENSMLUG00000025421) #31	PIWIL4 (ENSMLUG00000002018) #33	AMOTL1 (ENSMLUG00000002026) #34	ENSMLUG00000002032 #35	ENSMLUG00000028321 #36	ENSMLUG00000025372
Megabat	MODERN SPECIES	1959													DEUP1 (ENSPVAG00000005507) #18	ENSPVAG00000005513 #20	TAF1D (ENSPVAG00000005521) #21	C11orf54 (ENSPVAG00000005522) #22
Equus	ANCESTRAL SPECIES	15	ENSGT00940000162409	ENSGT00940000163440	ENSGT00940000163858	ENSGT00940000160005.A	ENSGT00940000160005.B	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162741.i.b	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT01030000234590.A.a.b	ENSGT00940000155511	ENSGT00950000183380	ENSGT00950000183022.a.a.a	ENSGT01100000263557.B	ENSGT00940000162537	ENSGT00940000153313.A	ENSGT00510000048154	ENSGT00940000158872	ENSGT00940000156517	ENSGT00390000001015	ENSGT00940000160895	ENSGT00510000050180
Donkey	MODERN SPECIES	12	ENSEASG00005035530	ENSEASG00005012599	ENSEASG00005012578	ENSEASG00005012565	ENSEASG00005012508 #13	ENSEASG00005034965 #14	ENSEASG00005012468 #14	FAT3 (ENSEASG00005012460) #15	ENSEASG00005012365	MTNR1B (ENSEASG00005012345) #16	SLC36A4 (ENSEASG00005012341) #17	DEUP1 (ENSEASG00005012331) #18	SMCO4 (ENSEASG00005012324) #19	CEP295 (ENSEASG00005012313) #20	TAF1D (ENSEASG00005012293) #21	C11orf54 (ENSEASG00005012286) #22	MED17 (ENSEASG00005012254) #23	VSTM5 (ENSEASG00005012241) #24	ENSEASG00005012238	HEPHL1 (ENSEASG00005012218) #25	PANX1 (ENSEASG00005012200) #26	IZUMO1R (ENSEASG00005035464) #27	GPR83 (ENSEASG00005012119) #28	MRE11 (ENSEASG00005011342) #29	ANKRD49 (ENSEASG00005032651) #30	C11orf97 (ENSEASG00005011314) #31	FUT4 (ENSEASG00005011312) #32	PIWIL4 (ENSEASG00005027983) #33	AMOTL1 (ENSEASG00005011287) #34	CWC15 (ENSEASG00005011279) #35	ENSEASG00005028515 #36
Horse	MODERN SPECIES	28	ENSECAG00000028200	ENSECAG00000044730	ENSECAG00000040279	ENSECAG00000021692	ENSECAG00000019401	CHORDC1 (ENSECAG00000008999) #14	ENSECAG00000049990	ENSECAG00000005999	FAT3 (ENSECAG00000001988) #15	ENSECAG00000022260	MTNR1B (ENSECAG00000022198) #16	SLC36A4 (ENSECAG00000021237) #17	DEUP1 (ENSECAG00000020231) #18	CEP295 (ENSECAG00000018114) #20	TAF1D (ENSECAG00000017850) #21	C7H11orf54 (ENSECAG00000015110) #22	MED17 (ENSECAG00000011329) #23	VSTM5 (ENSECAG00000011305) #24	ENSECAG00000011283	HEPHL1 (ENSECAG00000008947) #25	PANX1 (ENSECAG00000007780) #26	IZUMO1R (ENSECAG00000007254) #27	ENSECAG00000052866	MARCHF2 (ENSECAG00000025028)	HNRNPM (ENSECAG00000023868)	PRAM1 (ENSECAG00000023478)	ZNF414 (ENSECAG00000023401)	MYO1F (ENSECAG00000016782)	ADAMTS10 (ENSECAG00000016210)	NFILZ (ENSECAG00000053206)	ENSECAG00000005142
Eulipotyphla	ANCESTRAL SPECIES	1636																ENSGT00390000017214 #22	ENSGT00390000011810 #23
Hedgehog	MODERN SPECIES	12646																C11orf54 (ENSEEUG00000000920) #22
Common shrew	MODERN SPECIES	5862																C11orf54 (ENSSARG00000005566) #22	MED17 (ENSSARG00000005589) #23
Atlantogenata	ANCESTRAL SPECIES	35	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT00940000160005.B	ENSGT00940000160005.A	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162741.i.b	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT01030000234590.A.a.b	ENSGT00940000155511	ENSGT00950000183022.a.a.a	ENSGT01100000263557.B	ENSGT00940000162537	ENSGT00940000153313.A	ENSGT00510000048154	ENSGT00940000158872	ENSGT00940000156517	ENSGT00390000001015	ENSGT00940000160895	ENSGT00510000050180
Xenarthra	ANCESTRAL SPECIES	612											ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24
Sloth	MODERN SPECIES	5377														ENSCHOG00000013419 ##20	TAF1D (ENSCHOG00000013436) #21	C11orf54 (ENSCHOG00000013446) #22
Armadillo	MODERN SPECIES	3404									ENSDNOG00000030964	SLC36A4 (ENSDNOG00000040589) #17	DEUP1 (ENSDNOG00000003919) #18	SMCO4 (ENSDNOG00000014946) #19	ENSDNOG00000031219	CEP295 (ENSDNOG00000004202) #20	TAF1D (ENSDNOG00000041284) #21	C11orf54 (ENSDNOG00000004224) #22	MED17 (ENSDNOG00000038310) #23	VSTM5 (ENSDNOG00000025124) #24
Afrotheria	ANCESTRAL SPECIES	153						ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162741.i.b	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT01030000234590.A.a.b	ENSGT00940000155511	ENSGT00950000183022.a.a.a	ENSGT00940000162537	ENSGT00940000153313.A	ENSGT00510000048154	ENSGT00940000158872	ENSGT00940000156517	ENSGT00940000160895	ENSGT00510000050180
Afrotheria_a	ANCESTRAL SPECIES	146		ENSGT00940000163858	ENSGT00940000160005.A.c	ENSGT00940000160005.B	ENSGT00940000160005.A.d.b	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162741.i.b	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT01030000234590.A.a.b	ENSGT00940000155511	ENSGT00950000183022.a.a.a	ENSGT00940000162537	ENSGT00940000153313.A	ENSGT00510000048154	ENSGT00940000158872	ENSGT00940000156517	ENSGT00940000160895	ENSGT00510000050180
Elephant	MODERN SPECIES	340		ENSLAFG00000029491	ENSLAFG00000028928	NAALAD2 (ENSLAFG00000007972) #13	CHORDC1 (ENSLAFG00000017340) #14	ENSLAFG00000026935	ENSLAFG00000027345	FAT3 (ENSLAFG00000017223) #15	ENSLAFG00000025161	MTNR1B (ENSLAFG00000028028) #16	SLC36A4 (ENSLAFG00000021548) #17	DEUP1 (ENSLAFG00000015716) #18	SMCO4 (ENSLAFG00000006995) #19	ENSLAFG00000020915 #20	TAF1D (ENSLAFG00000023200) #21	C11orf54 (ENSLAFG00000023184) #22	MED17 (ENSLAFG00000018587) #23	VSTM5 (ENSLAFG00000020501) #24	ENSLAFG00000030318	HEPHL1 (ENSLAFG00000012664) #25	PANX1 (ENSLAFG00000011329) #26	IZUMO1R (ENSLAFG00000032394) #27	GPR83 (ENSLAFG00000016367) #28	MRE11 (ENSLAFG00000016373) #29	ANKRD49 (ENSLAFG00000003825) #30	FUT4 (ENSLAFG00000008415) #32	PIWIL4 (ENSLAFG00000008418) #33	AMOTL1 (ENSLAFG00000022009) #34	CWC15 (ENSLAFG00000004456) #35	KDM4D (ENSLAFG00000004460) #36	ENSLAFG00000028723 #36
Hyrax	MODERN SPECIES	4952															ENSPCAG00000007895 ##20	C11orf54 (ENSPCAG00000008003) #22	MED17 (ENSPCAG00000008048) #23	VSTM5 (ENSPCAG00000008104) #24
Tenrec	MODERN SPECIES	7351																C11orf54 (ENSETEG00000007229) #22
Marsupialia	ANCESTRAL SPECIES	5	ENSGT01040000240383.a.a.b.a.b.a.b	ENSGT01040000240383.a.a.b.a.a.a	ENSGT01040000240383.a.a.b.a.a.b	ENSGT01040000240383.b.b.b	ENSGT01040000240383.b.a.a.k.a	ENSGT01040000240383.b.a.a.l.a.b	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT01030000234592.B	ENSGT00950000183168.A
Marsupialia_b	ANCESTRAL SPECIES	3	ENSGT01040000240383.a.a.b.b	ENSGT01040000240383.a.a.b.a.a.a	ENSGT01040000240383.a.a.b.a.a.b	ENSGT01040000240383.b.b.b	ENSGT01040000240383.b.a.a.k.a	ENSGT01040000240383.b.a.a.l.a.b	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981.j #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT01030000234592.B	ENSGT00950000183168.A
Diprotodontia	ANCESTRAL SPECIES	11	ENSGT01040000240383.a.a.b.a.b.a.a.b	ENSGT01040000240383.a.a.b.a.b.a.a.a.b	ENSGT01040000240383.a.a.b.a.a.b	ENSGT01040000240383.b.b.b	ENSGT01040000240383.b.a.a.k.b	ENSGT01040000240383.a.a.b.b	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981.j #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT01030000234592.B	ENSGT00950000183168.A
Diprotodontia_a	ANCESTRAL SPECIES	9	ENSGT01010000222320.a.a.a.a.e	ENSGT01010000222320.a.a.a.a.f	ENSGT01040000240383.b.b.a	ENSGT01040000240383.a.a.b.a.b.a.a.b	ENSGT01040000240383.a.a.b.a.b.a.a.a.b	ENSGT01040000240383.a.a.b.b.c.a	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981.j #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT01030000234592.B	ENSGT00950000183168.A
Common wonbat	MODERN SPECIES	459							FAT3 (ENSVURG00010009960) #15	ENSVURG00010010016	ENSVURG00010010020	ENSVURG00010010023	SLC36A4 (ENSVURG00010010032) #17	DEUP1 (ENSVURG00010010055) #18	ENSVURG00010010135 #19	ENSVURG00010010145 #20	ENSVURG00010010253 #21	C11orf54 (ENSVURG00010010260) #22	MED17 (ENSVURG00010010274) #23	VSTM5 (ENSVURG00010010292) #24	HEPHL1 (ENSVURG00010010303) #25	PANX1 (ENSVURG00010010344) #26	IZUMO1R (ENSVURG00010010349) #27	GPR83 (ENSVURG00010010363) #28	MRE11 (ENSVURG00010010496) #29	ANKRD49 (ENSVURG00010010565) #30	C11orf97 (ENSVURG00010010576) #31	ENSVURG00010010592 #32	PIWIL4 (ENSVURG00010010619) #33	AMOTL1 (ENSVURG00010010648) #34	CWC15 (ENSVURG00010010692) #35	ENDOD1 (ENSVURG00010010700)	SESN3 (ENSVURG00010010715)
koala	MODERN SPECIES	86	ENSPCIG00000031052	ENSPCIG00000005080	ENSPCIG00000014796	ENSPCIG00000006841 #13	ENSPCIG00000036776 #13	CHORDC1 (ENSPCIG00000006836) #14	ENSPCIG00000020779	ENSPCIG00000034515	ENSPCIG00000031045 #15	MTNR1B (ENSPCIG00000003688) #16	ENSPCIG00000005509	SLC36A4 (ENSPCIG00000003665) #17	DEUP1 (ENSPCIG00000003590) #18	ENSPCIG00000003565 #19	ENSPCIG00000003418 #21	C11orf54 (ENSPCIG00000003405) #22	MED17 (ENSPCIG00000003395) #23	VSTM5 (ENSPCIG00000003391) #24	HEPHL1 (ENSPCIG00000012215) #25	PANX1 (ENSPCIG00000003374) #26	ENSPCIG00000003364	IZUMO1R (ENSPCIG00000003349) #27	GPR83 (ENSPCIG00000036706) #28	MRE11 (ENSPCIG00000009614) #29	ANKRD49 (ENSPCIG00000009610) #30	C11orf97 (ENSPCIG00000034457) #31	ENSPCIG00000030597 #32	PIWIL4 (ENSPCIG00000030600) #33	AMOTL1 (ENSPCIG00000001368) #34	CWC15 (ENSPCIG00000001348) #35	ENDOD1 (ENSPCIG00000001331)
Wallaby	MODERN SPECIES	8888																C11orf54 (ENSMEUG00000008536) #22
Tasmanian devil	MODERN SPECIES	2	OR8D1 (ENSSHAG00000011261)	ENSSHAG00000011107	ENSSHAG00000010870	ENSSHAG00000010047 #13	ENSSHAG00000009863 #14	ENSSHAG00000025058	FAT3 (ENSSHAG00000012153) #15	MTNR1B (ENSSHAG00000011264) #16	ENSSHAG00000023084	ENSSHAG00000010485	SLC36A4 (ENSSHAG00000010022) #17	DEUP1 (ENSSHAG00000007373) #18	SMCO4 (ENSSHAG00000024792) #19	ENSSHAG00000006706 #20	ENSSHAG00000005874 #21	C11orf54 (ENSSHAG00000005435) #22	MED17 (ENSSHAG00000004223) #23	VSTM5 (ENSSHAG00000021368) #24	HEPHL1 (ENSSHAG00000018243) #25	PANX1 (ENSSHAG00000018175) #26	IZUMO1R (ENSSHAG00000029294) #27	GPR83 (ENSSHAG00000024803) #28	MRE11 (ENSSHAG00000017729) #29	ENSSHAG00000021016 #30	ENSSHAG00000028715 #31	FUT4 (ENSSHAG00000032130) #32	PIWIL4 (ENSSHAG00000017415) #33	AMOTL1 (ENSSHAG00000016815) #34	ENSSHAG00000016534 #35	ENDOD1 (ENSSHAG00000016362)	SESN3 (ENSSHAG00000016018)
Opossum	DUPLICATION
Opossum	MODERN SPECIES	3	ENSMODG00000042491 #14	ENSMODG00000042939	FAT3 (ENSMODG00000003108) #15	MTNR1B (ENSMODG00000001012) #16	ENSMODG00000050775	ENSMODG00000046229	SLC36A4 (ENSMODG00000000957) #17	ENSMODG00000024309	DEUP1 (ENSMODG00000000922) #18	ENSMODG00000000726	ENSMODG00000030044	ENSMODG00000000714 #20	ENSMODG00000042713	ENSMODG00000047013	ENSMODG00000008546 #21	ENSMODG00000000412 #22	MED17 (ENSMODG00000000383) #23	VSTM5 (ENSMODG00000045386) #24	HEPHL1 (ENSMODG00000000357) #25	PANX1 (ENSMODG00000000278) #26	ENSMODG00000041397	IZUMO1R (ENSMODG00000000260) #27	GPR83 (ENSMODG00000000236) #28	MRE11 (ENSMODG00000000231) #29	ANKRD49 (ENSMODG00000000222) #30	ENSMODG00000043171	ENSMODG00000028613 #31	FUT4 (ENSMODG00000024373) #32	PIWIL4 (ENSMODG00000000217) #33	AMOTL1 (ENSMODG00000000180) #34	ENSMODG00000000169 #35
Opossum	MODERN SPECIES	4	ENSMODG00000020589	ENSMODG00000024822	GRXCR1 (ENSMODG00000024820)	ATP8A1 (ENSMODG00000020583)	SHISA3 (ENSMODG00000020580)	ENSMODG00000024819	BEND4 (ENSMODG00000020579)	SLC30A9 (ENSMODG00000020577)	TMEM33 (ENSMODG00000020574)	PHOX2B (ENSMODG00000020573)	LIMCH1 (ENSMODG00000020570)	ENSMODG00000045721	UCHL1 (ENSMODG00000020568)	APBB2 (ENSMODG00000020566)	NSUN7 (ENSMODG00000020564)	ENSMODG00000020565 #22	ENSMODG00000038881	ENSMODG00000007003	CHRNA9 (ENSMODG00000020560)	N4BP2 (ENSMODG00000020559)	PDS5A (ENSMODG00000020557)	UBE2K (ENSMODG00000020556)	ENSMODG00000038421	SMIM14 (ENSMODG00000041423)	ENSMODG00000020549	LIAS (ENSMODG00000020554)	RPL9 (ENSMODG00000020553)	KLB (ENSMODG00000020550)	RFC1 (ENSMODG00000020548)	WDR19 (ENSMODG00000020546)	ENSMODG00000020543
Platypus	MODERN SPECIES	12	RAB38 (ENSOANG00000008872)	CTSC (ENSOANG00000043869) #7	GRM5 (ENSOANG00000008870) #8	TYR (ENSOANG00000008868) #10	NOX4 (ENSOANG00000008867) #11	FOLH1 (ENSOANG00000004606) #12	NAALAD2 (ENSOANG00000004605) #13	CHORDC1 (ENSOANG00000043552) #14	FAT3 (ENSOANG00000011705) #15	ENSOANG00000042265	SLC36A4 (ENSOANG00000011707) #17	ENSOANG00000011708 #18	ENSOANG00000040404 #18	SMCO4 (ENSOANG00000045400) #19	ENSOANG00000011713 #21	C11orf54 (ENSOANG00000011715) #22	MED17 (ENSOANG00000011716) #23	VSTM5 (ENSOANG00000045898) #24	HEPHL1 (ENSOANG00000011719) #25	PANX1 (ENSOANG00000011723) #26	GPR83 (ENSOANG00000040634) #28	MRE11 (ENSOANG00000010399) #29	ANKRD49 (ENSOANG00000010402) #30	ENSOANG00000029843 #31	ENSOANG00000038002 #32	AMOTL1 (ENSOANG00000010403) #34	ENSOANG00000010404 #35	ENSOANG00000010405	ENSOANG00000010505	SESN3 (ENSOANG00000010503)	FAM76B (ENSOANG00000045559)
Sauria	ANCESTRAL SPECIES	2	ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000166029	ENSGT01030000234590.A.a.b	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00940000154336 #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT01030000234592.B
Archelosauria	ANCESTRAL SPECIES		ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000166029.d	ENSGT01030000234590.A.a.b	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00940000154336 #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT01030000234592.B.`b
Archosauria	ANCESTRAL SPECIES	2	ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000166029.d	ENSGT01030000234590.A.a.b	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00940000154336 #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT01030000234592.B.`b
Aves	ANCESTRAL SPECIES		ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000166029.d	ENSGT01030000234590.A.a.b	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00940000154336 #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT01030000234592.B.`b	ENSGT00950000183168.A
Neognathae	ANCESTRAL SPECIES	1	ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000166029.d	ENSGT01030000234590.A.a.b	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00940000154336 #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT01030000234592.B.`b	ENSGT00950000183168.A
Galloanserae	ANCESTRAL SPECIES	1	ENSGT00940000157301.b	ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000166029.d	ENSGT01030000234590.A.a.b	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT01030000234592.B.`b	ENSGT00950000183168.A	ENSGT00940000159074
Anatidae	ANCESTRAL SPECIES	16	ENSGT00940000157301.b	ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000166029.d	ENSGT01030000234590.A.a.b	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT01030000234592.B.`b	ENSGT00950000183168.A	ENSGT00940000159074
Pink-footed goose	MODERN SPECIES	69	CTSC (ENSABRG00000022653) #7	GRM5 (ENSABRG00000022656) #8	TYR (ENSABRG00000022662) #10	NOX4 (ENSABRG00000022666) #11	FOLH1 (ENSABRG00000022670) #12	ENSABRG00000022672 #13	ENSABRG00000022673 #13	CHORDC1 (ENSABRG00000022674) #14	FAT3 (ENSABRG00000022682) #15	MTNR1B (ENSABRG00000022688) #16	SLC36A4 (ENSABRG00000022693) #17	DEUP1 (ENSABRG00000022695) #18	SMCO4 (ENSABRG00000022697) #19	ENSABRG00000022699 #20	TAF1D (ENSABRG00000022716) #21	C11orf54 (ENSABRG00000022718) #22	MED17 (ENSABRG00000022726) #23	VSTM5 (ENSABRG00000022741) #24	ENSABRG00000022742	ENSABRG00000022743	ENSABRG00000022745	ENSABRG00000022746	PANX1 (ENSABRG00000022749) #26	GPR83 (ENSABRG00000022752) #28	MRE11 (ENSABRG00000022756) #29	ANKRD49 (ENSABRG00000022759) #30	C11orf97 (ENSABRG00000022763) #31	FUT4 (ENSABRG00000022765) #32	AMOTL1 (ENSABRG00000022773) #34	CWC15 (ENSABRG00000022800) #35	ENDOD1 (ENSABRG00000022805)
Duck	MODERN SPECIES		RAB38 (ENSAPLG00000009310)	CTSC (ENSAPLG00000009381) #7	ENSAPLG00000031170	GRM5 (ENSAPLG00000009575) #8	TYR (ENSAPLG00000012676) #10	NOX4 (ENSAPLG00000012543) #11	FOLH1 (ENSAPLG00000012440) #12	NAALAD2 (ENSAPLG00000012368) #13	CHORDC1 (ENSAPLG00000000579) #14	FAT3 (ENSAPLG00000013451) #15	MTNR1B (ENSAPLG00000014060) #16	SLC36A4 (ENSAPLG00000014091) #17	DEUP1 (ENSAPLG00000014531) #18	ENSAPLG00000014794 #20	ENSAPLG00000024522 #21	C11orf54 (ENSAPLG00000014882) #22	MED17 (ENSAPLG00000015087) #23	VSTM5 (ENSAPLG00000015398) #24	ENSAPLG00000015429	ENSAPLG00000015524	HEPHL1 (ENSAPLG00000015713) #25	ENSAPLG00000027891	PANX1 (ENSAPLG00000016177) #26	MRE11 (ENSAPLG00000021936) #29	C11orf97 (ENSAPLG00000019178) #31	FUT4 (ENSAPLG00000019961) #32	AMOTL1 (ENSAPLG00000002742) #34	CWC15 (ENSAPLG00000003221) #35	ENDOD1 (ENSAPLG00000025860)	SESN3 (ENSAPLG00000003440)	FAM76B (ENSAPLG00000003717)
Phasianidae	ANCESTRAL SPECIES		ENSGT00940000157301.b	ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981.a #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000166029.d	ENSGT01030000234590.A.a.b	ENSGT00940000157994.b #25	ENSGT00940000153972.A #26	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT01030000234592.B.`b	ENSGT00950000183168.A	ENSGT00940000159074
Japanese quail	MODERN SPECIES		CTSC (ENSCJPG00005004155) #7	GRM5 (ENSCJPG00005004152) #8	TYR (ENSCJPG00005004127) #10	NOX4 (ENSCJPG00005004115) #11	FOLH1 (ENSCJPG00005004111) #12	NAALAD2 (ENSCJPG00005004108) #13	CHORDC1 (ENSCJPG00005004096) #14	ENSCJPG00005004093	FAT3 (ENSCJPG00005004054) #15	ENSCJPG00005004037	MTNR1B (ENSCJPG00005004035) #16	ENSCJPG00005004027 #17	DEUP1 (ENSCJPG00005004002) #18	ENSCJPG00005003994 #20	ENSCJPG00005003982 #21	C11orf54 (ENSCJPG00005003977) #22	MED17 (ENSCJPG00005003976) #23	VSTM5 (ENSCJPG00005003975) #24	ENSCJPG00005003974	ENSCJPG00005003973	ENSCJPG00005003971	ENSCJPG00005003967 #25	PANX1 (ENSCJPG00005003965) #26	GPR83 (ENSCJPG00005003962) #28	MRE11 (ENSCJPG00005003960) #29	ANKRD49 (ENSCJPG00005003958) #30	C11orf97 (ENSCJPG00005003956) #31	FUT4 (ENSCJPG00005003953) #32	AMOTL1 (ENSCJPG00005003951) #34	CWC15 (ENSCJPG00005003933) #35	ENDOD1 (ENSCJPG00005003932)
Phasianidae_b	ANCESTRAL SPECIES		ENSGT00940000157301.b	ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981.a #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000166029.d	ENSGT01030000234590.A.a.b	ENSGT00940000157994.b #25	ENSGT00940000153972.A #26	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT01030000234592.B.`b	ENSGT00950000183168.A	ENSGT00940000159074
Turkey	MODERN SPECIES		ENSMGAG00000019758 #15	ENSMGAG00000015215 #15	ENSMGAG00000017245 #34	ENSMGAG00000015195 #32	C11orf97 (ENSMGAG00000017907) #31	PANX1 (ENSMGAG00000015199) #26	GPR83 (ENSMGAG00000015198) #28	ENSMGAG00000015197	ANKRD49 (ENSMGAG00000015196) #30	ENSMGAG00000015201	ENSMGAG00000015200 #25	ENSMGAG00000015204 #23	ENSMGAG00000015203 #24	ENSMGAG00000015202	ENSMGAG00000015206 #21	C11orf54 (ENSMGAG00000015205) #22	ENSMGAG00000015214 #18	SMCO4 (ENSMGAG00000021417) #19	CWC15 (ENSMGAG00000015193) #35	ENDOD1 (ENSMGAG00000020832)	SESN3 (ENSMGAG00000015191)	FAM76B (ENSMGAG00000015189)	CEP57 (ENSMGAG00000015188)	MTMR2 (ENSMGAG00000015187)	MAML2 (ENSMGAG00000015186)	CCDC82 (ENSMGAG00000015184)	FGF9 (ENSMGAG00000021422)	MRPL57 (ENSMGAG00000015610)	ZDHHC20 (ENSMGAG00000015122)	ENSMGAG00000015124	ENSMGAG00000015123
Chicken	MODERN SPECIES		CTSC (ENSGALG00010007485) #7	GRM5 (ENSGALG00010007886) #8	ENSGALG00010007873	TYR (ENSGALG00010007864) #10	NOX4 (ENSGALG00010007357) #11	FOLH1 (ENSGALG00010007404) #12	NAALAD2 (ENSGALG00010007392) #13	CHORDC1 (ENSGALG00010007375) #14	FAT3 (ENSGALG00010007920) #15	MTNR1B (ENSGALG00010009056) #16	SLC36A4 (ENSGALG00010009039) #17	DEUP1 (ENSGALG00010009012) #18	SMCO4 (ENSGALG00010008974) #19	ENSGALG00010008837 #20	ENSGALG00010008821 #21	C11orf54 (ENSGALG00010008793) #22	MED17 (ENSGALG00010008775) #23	VSTM5 (ENSGALG00010008739) #24	ENSGALG00010008694	TM4SF1a (ENSGALG00010008664)	HEPHL1 (ENSGALG00010008641) #25	ENSGALG00010009160	PANX1 (ENSGALG00010008580) #26	GPR83 (ENSGALG00010008529) #28	MRE11 (ENSGALG00010008516) #29	ANKRD49 (ENSGALG00010008492) #30	C11orf97 (ENSGALG00010008466) #31	FUT4 (ENSGALG00010009149) #32	AMOTL1 (ENSGALG00010008453) #34	CWC15 (ENSGALG00010008409) #35	ENDOD1 (ENSGALG00010008395)
Neognathae_b	ANCESTRAL SPECIES		ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000166029.d	ENSGT01030000234590.A.a.b	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00940000154336 #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT01030000234592.B.`b	ENSGT00950000183168.A
Passeriformes	ANCESTRAL SPECIES	1	ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000163982.sd.b	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000166029.d	ENSGT01030000234590.A.a.b	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00940000154336 #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT01030000234592.B.`b	ENSGT00950000183168.A
Great tit	MODERN SPECIES		CTSC (ENSPMJG00000000646) #7	GRM5 (ENSPMJG00000000632) #8	TYR (ENSPMJG00000000599) #10	NOX4 (ENSPMJG00000000571) #11	FOLH1 (ENSPMJG00000000554) #12	NAALAD2 (ENSPMJG00000000533) #13	CHORDC1 (ENSPMJG00000000513) #14	FAT3 (ENSPMJG00000000168) #15	MTNR1B (ENSPMJG00000000122) #16	ENSPMJG00000000068	SLC36A4 (ENSPMJG00000017902) #17	DEUP1 (ENSPMJG00000017897) #18	SMCO4 (ENSPMJG00000017893) #19	ENSPMJG00000017889 #20	TAF1D (ENSPMJG00000017879) #21	C11orf54 (ENSPMJG00000017878) #22	MED17 (ENSPMJG00000017877) #23	VSTM5 (ENSPMJG00000017876) #24	ENSPMJG00000017875	ENSPMJG00000017874	ENSPMJG00000017872	ENSPMJG00000017871	ENSPMJG00000017870	PANX1 (ENSPMJG00000017869) #26	GPR83 (ENSPMJG00000017868) #28	MRE11 (ENSPMJG00000017867) #29	ANKRD49 (ENSPMJG00000017866) #30	ENSPMJG00000017865	FUT4 (ENSPMJG00000017864) #32	AMOTL1 (ENSPMJG00000017863) #34	CWC15 (ENSPMJG00000017862) #35
Passeriformes_d	ANCESTRAL SPECIES	1	ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000163982.sd.b	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000166029.d	ENSGT01030000234590.A.a.b	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00940000154336 #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT01030000234592.B.`b	ENSGT00950000183168.A
Passeriformes_g	ANCESTRAL SPECIES	2	ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000163982.sd.b	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000166029.d	ENSGT01030000234590.A.a.b	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00940000154336 #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT01030000234592.B.`b	ENSGT00950000183168.A
Passeroidea	ANCESTRAL SPECIES	5	ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000163982.sd.b	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000166029.d	ENSGT01030000234590.A.a.b	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00940000154336 #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT01030000234592.B.`b	ENSGT00950000183168.A
Common canary	MODERN SPECIES	4	RAB38 (ENSSCAG00000003089)	CTSC (ENSSCAG00000003096) #7	GRM5 (ENSSCAG00000003123) #8	TYR (ENSSCAG00000003149) #10	NOX4 (ENSSCAG00000003176) #11	FOLH1 (ENSSCAG00000003270) #12	NAALAD2 (ENSSCAG00000003286) #13	CHORDC1 (ENSSCAG00000003291) #14	FAT3 (ENSSCAG00000003312) #15	MTNR1B (ENSSCAG00000003497) #16	SLC36A4 (ENSSCAG00000003536) #17	DEUP1 (ENSSCAG00000003544) #18	SMCO4 (ENSSCAG00000003568) #19	ENSSCAG00000003573 #20	TAF1D (ENSSCAG00000003597) #21	C11orf54 (ENSSCAG00000003598) #22	MED17 (ENSSCAG00000003601) #23	VSTM5 (ENSSCAG00000003607) #24	ENSSCAG00000003611	ENSSCAG00000003613	HEPHL1 (ENSSCAG00000003621) #25	PANX1 (ENSSCAG00000003636) #26	GPR83 (ENSSCAG00000003647) #28	MRE11 (ENSSCAG00000003648) #29	ANKRD49 (ENSSCAG00000003657) #30	ENSSCAG00000003659	FUT4 (ENSSCAG00000003662) #32	AMOTL1 (ENSSCAG00000003677) #34	CWC15 (ENSSCAG00000003798) #35	ENDOD1 (ENSSCAG00000003802)	SESN3 (ENSSCAG00000003813)
Zebra finch	MODERN SPECIES		RAB38 (ENSTGUG00000012909)	CTSC (ENSTGUG00000012906) #7	GRM5 (ENSTGUG00000012900) #8	TYR (ENSTGUG00000012899) #10	NOX4 (ENSTGUG00000012893) #11	FOLH1 (ENSTGUG00000012884) #12	CHORDC1 (ENSTGUG00000029643) #14	FAT3 (ENSTGUG00000012873) #15	MTNR1B (ENSTGUG00000028228) #16	ENSTGUG00000012868	SLC36A4 (ENSTGUG00000012863) #17	DEUP1 (ENSTGUG00000012862) #18	SMCO4 (ENSTGUG00000024656) #19	ENSTGUG00000019295 #20	TAF1D (ENSTGUG00000012851) #21	C11orf54 (ENSTGUG00000012850) #22	MED17 (ENSTGUG00000012845) #23	VSTM5 (ENSTGUG00000012843) #24	HEPHL1 (ENSTGUG00000012829) #25	ENSTGUG00000012842	ENSTGUG00000012838	PANX1 (ENSTGUG00000012828) #26	GPR83 (ENSTGUG00000026792) #28	MRE11 (ENSTGUG00000012824) #29	ANKRD49 (ENSTGUG00000012823) #30	C11orf97 (ENSTGUG00000022175) #31	FUT4 (ENSTGUG00000027501) #32	AMOTL1 (ENSTGUG00000012818) #34	CWC15 (ENSTGUG00000029544) #35	ENDOD1 (ENSTGUG00000026431)	SESN3 (ENSTGUG00000024822)
Medium ground finch	MODERN SPECIES	5	FZD4 (ENSGFOG00000005323)	TMEM135 (ENSGFOG00000005294)	RAB38 (ENSGFOG00000005283)	CTSC (ENSGFOG00000005273) #7	GRM5 (ENSGFOG00000005240) #8	TYR (ENSGFOG00000005224) #10	NOX4 (ENSGFOG00000005163) #11	NAALAD2 (ENSGFOG00000005109) #13	CHORDC1 (ENSGFOG00000005089) #14	FAT3 (ENSGFOG00000004779) #15	MTNR1B (ENSGFOG00000004699) #16	SLC36A4 (ENSGFOG00000004662) #17	SMCO4 (ENSGFOG00000004649) #19	ENSGFOG00000004589 #20	TAF1D (ENSGFOG00000004531) #21	C11orf54 (ENSGFOG00000004512) #22	MED17 (ENSGFOG00000004494) #23	VSTM5 (ENSGFOG00000004486) #24	ENSGFOG00000004454	ENSGFOG00000004426	ENSGFOG00000004413	ENSGFOG00000004362	ENSGFOG00000004352	PANX1 (ENSGFOG00000004334) #26	GPR83 (ENSGFOG00000004321) #28	MRE11 (ENSGFOG00000004308) #29	ANKRD49 (ENSGFOG00000004301) #30	C11orf97 (ENSGFOG00000004289) #31	ENSGFOG00000004274 #32	AMOTL1 (ENSGFOG00000003833) #34	CWC15 (ENSGFOG00000003791) #35
Flycatcher	MODERN SPECIES		GRM5 (ENSFALG00000007862) #8	TYR (ENSFALG00000007878) #10	NOX4 (ENSFALG00000023852) #11	ENSFALG00000007887 #12	NAALAD2 (ENSFALG00000007895) #13	CHORDC1 (ENSFALG00000007903) #14	FAT3 (ENSFALG00000000272) #15	MTNR1B (ENSFALG00000000278) #16	ENSFALG00000000280	ENSFALG00000026085	SLC36A4 (ENSFALG00000000281) #17	DEUP1 (ENSFALG00000000285) #18	SMCO4 (ENSFALG00000014226) #19	ENSFALG00000000292 #20	TAF1D (ENSFALG00000000293) #21	C11orf54 (ENSFALG00000000294) #22	MED17 (ENSFALG00000000295) #23	VSTM5 (ENSFALG00000028517) #24	ENSFALG00000000300	ENSFALG00000025897	HEPHL1 (ENSFALG00000000307) #25	PANX1 (ENSFALG00000000311) #26	GPR83 (ENSFALG00000000313) #28	MRE11 (ENSFALG00000000315) #29	ANKRD49 (ENSFALG00000027188) #30	ENSFALG00000020356	FUT4 (ENSFALG00000014231) #32	AMOTL1 (ENSFALG00000000320) #34	CWC15 (ENSFALG00000027709) #35	ENDOD1 (ENSFALG00000000330)	SESN3 (ENSFALG00000000333)
Neognathae_c	ANCESTRAL SPECIES	11	ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000166029.d	ENSGT01030000234590.A.a.b	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00940000154336 #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT01030000234592.B.`b	ENSGT00950000183168.A
Golden eagle	MODERN SPECIES	10	NOX4 (ENSACCG00020008319) #11	ENSACCG00020008302	FOLH1 (ENSACCG00020008291) #12	NAALAD2 (ENSACCG00020008252) #13	CHORDC1 (ENSACCG00020008213) #14	ENSACCG00020008196 #15	ENSACCG00020008176 #15	MTNR1B (ENSACCG00020008161) #16	SLC36A4 (ENSACCG00020008156) #17	ENSACCG00020008145	ENSACCG00020008136	DEUP1 (ENSACCG00020008117) #18	SMCO4 (ENSACCG00020008104) #19	ENSACCG00020008067 #20	TAF1D (ENSACCG00020008021) #21	C11orf54 (ENSACCG00020008009) #22	MED17 (ENSACCG00020007997) #23	VSTM5 (ENSACCG00020007981) #24	ENSACCG00020009626	ENSACCG00020009612	HEPHL1 (ENSACCG00020009476) #25	PANX1 (ENSACCG00020009270) #26	GPR83 (ENSACCG00020009257) #28	MRE11 (ENSACCG00020009228) #29	ANKRD49 (ENSACCG00020009196) #30	C11orf97 (ENSACCG00020009174) #31	FUT4 (ENSACCG00020009150) #32	AMOTL1 (ENSACCG00020009124) #34	CWC15 (ENSACCG00020009107) #35	ENDOD1 (ENSACCG00020009097)	SESN3 (ENSACCG00020009081)
African ostrich	MODERN SPECIES	939											SLC36A4 (ENSSCUG00000018034) #17	DEUP1 (ENSSCUG00000018036) #18	SMCO4 (ENSSCUG00000018039) #19	ENSSCUG00000018046 #20	TAF1D (ENSSCUG00000018058) #21	C11orf54 (ENSSCUG00000018059) #22	MED17 (ENSSCUG00000018060) #23	VSTM5 (ENSSCUG00000018064) #24	ENSSCUG00000018066	ENSSCUG00000018067	HEPHL1 (ENSSCUG00000018071) #25	PANX1 (ENSSCUG00000018075) #26
Australian saltwater crocodile	MODERN SPECIES	27	TMEM135 (ENSCPRG00005016050)	RAB38 (ENSCPRG00005016034)	CTSC (ENSCPRG00005016032) #7	GRM5 (ENSCPRG00005016003) #8	TYR (ENSCPRG00005015987) #10	NOX4 (ENSCPRG00005015970) #11	FOLH1 (ENSCPRG00005015598) #12	ENSCPRG00005015519 #13	ENSCPRG00005015516 #13	CHORDC1 (ENSCPRG00005015503) #14	FAT3 (ENSCPRG00005015491) #15	MTNR1B (ENSCPRG00005015445) #16	SMCO4 (ENSCPRG00005015426) #19	ENSCPRG00005015383 #20	ENSCPRG00005015361 #21	C11orf54 (ENSCPRG00005015358) #22	MED17 (ENSCPRG00005015350) #23	ENSCPRG00005015345	ENSCPRG00005015337	ENSCPRG00005015292	ENSCPRG00005015275	ENSCPRG00005015273 #26	GPR83 (ENSCPRG00005015271) #28	MRE11 (ENSCPRG00005015256) #29	ENSCPRG00005015245	FUT4 (ENSCPRG00005015235) #32	PIWIL4 (ENSCPRG00005015220) #33	AMOTL1 (ENSCPRG00005015195) #34	CWC15 (ENSCPRG00005015180) #35	ENDOD1 (ENSCPRG00005015178)	SESN3 (ENSCPRG00005015169)
Cryptodira	ANCESTRAL SPECIES		ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000166029.c	ENSGT00940000166029.d	ENSGT01030000234590.A.a.b	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00940000154336 #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35
Testudinoidea	ANCESTRAL SPECIES	1	ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174.a #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000166029.c	ENSGT00940000166029.d	ENSGT01030000234590.A.a.b	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00940000154336 #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35
Emydidae	ANCESTRAL SPECIES	19	ENSGT00940000157301.b	ENSGT00940000155787.o #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174.a #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a.a #18	ENSGT00940000153123.A #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000166029.c	ENSGT00940000166029.d	ENSGT01030000234590.A.a.b	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00940000154336 #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35
Three-toed box turtle	MODERN SPECIES	41	ENSTMTG00000016889 #7	GRM5 (ENSTMTG00000016932) #8	TYR (ENSTMTG00000017343) #10	NOX4 (ENSTMTG00000017371) #11	ENSTMTG00000017415	FOLH1 (ENSTMTG00000017450) #12	NAALAD2 (ENSTMTG00000018096) #13	CHORDC1 (ENSTMTG00000020258) #14	FAT3 (ENSTMTG00000020266) #15	MTNR1B (ENSTMTG00000020281) #16	ENSTMTG00000020287 #17	ENSTMTG00000020296 #18	ENSTMTG00000020305 #18	ENSTMTG00000020319 #20	ENSTMTG00000020383 #21	C11orf54 (ENSTMTG00000020387) #22	MED17 (ENSTMTG00000020392) #23	VSTM5 (ENSTMTG00000020399) #24	ENSTMTG00000020405	ENSTMTG00000020417	ENSTMTG00000020430	HEPHL1 (ENSTMTG00000020465) #25	ENSTMTG00000020644 #26	GPR83 (ENSTMTG00000020649) #28	ENSTMTG00000020654 #29	ENSTMTG00000020664 #29	ANKRD49 (ENSTMTG00000020673) #30	C11orf97 (ENSTMTG00000020677) #31	FUT4 (ENSTMTG00000020687) #32	PIWIL4 (ENSTMTG00000020697) #33	AMOTL1 (ENSTMTG00000020714) #34
painted turtle	MODERN SPECIES	1884																C11orf54 (ENSCPBG00000011164) #22
Testudinidae	ANCESTRAL SPECIES		ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT00950000185226	ENSGT00940000169935	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174.a #14	ENSGT00940000154981.f #15	ENSGT00940000154981.e #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000166029.c	ENSGT00940000166029.d	ENSGT01030000234590.A.a.b	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00940000154336 #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35
Abingdon island giant tortoise	MODERN SPECIES	485														SMCO4 (ENSCABG00000011621) #19	ENSCABG00000011647 #21	C11orf54 (ENSCABG00000011649) #22	MED17 (ENSCABG00000011653) #23	VSTM5 (ENSCABG00000011654) #24	ENSCABG00000011655	ENSCABG00000011658	ENSCABG00000011661	ENSCABG00000011666	HEPHL1 (ENSCABG00000011677) #25	ENSCABG00000011852
Goode s thornscrub tortoise	MODERN SPECIES		NOX4 (ENSGEVG00005002640) #11	ENSGEVG00005002656	ENSGEVG00005002661	FOLH1 (ENSGEVG00005002701) #12	NAALAD2 (ENSGEVG00005002830) #13	CHORDC1 (ENSGEVG00005002862) #14	ENSGEVG00005002873 #15	ENSGEVG00005002883 #15	ENSGEVG00005002896 #15	MTNR1B (ENSGEVG00005002911) #16	ENSGEVG00005002921 #17	DEUP1 (ENSGEVG00005002935) #18	SMCO4 (ENSGEVG00005002950) #19	ENSGEVG00005002997 #20	ENSGEVG00005005048 #21	C11orf54 (ENSGEVG00005005073) #22	MED17 (ENSGEVG00005005133) #23	VSTM5 (ENSGEVG00005005173) #24	ENSGEVG00005005202	ENSGEVG00005005236	ENSGEVG00005005301	HEPHL1 (ENSGEVG00005005429) #25	ENSGEVG00005005884 #26	GPR83 (ENSGEVG00005005900) #28	MRE11 (ENSGEVG00005005932) #29	ANKRD49 (ENSGEVG00005005970) #30	C11orf97 (ENSGEVG00005006010) #31	FUT4 (ENSGEVG00005006031) #32	PIWIL4 (ENSGEVG00005006224) #33	AMOTL1 (ENSGEVG00005007334) #34	CWC15 (ENSGEVG00005007384) #35
Chinese turtle	MODERN SPECIES	1972															ENSPSIG00000004198 #21	C11orf54 (ENSPSIG00000004224) #22	MED17 (ENSPSIG00000004370) #23	VSTM5 (ENSPSIG00000004406) #24	ENSPSIG00000004429	ENSPSIG00000004492	ENSPSIG00000004705	HEPHL1 (ENSPSIG00000004803) #25	PANX1 (ENSPSIG00000005582) #26	GPR83 (ENSPSIG00000005775) #28	MRE11 (ENSPSIG00000005945) #29	ANKRD49 (ENSPSIG00000007007) #30
Lepidosauria	ANCESTRAL SPECIES	17	ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT00950000185226	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000153123.A #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000166029	ENSGT01030000234590.A.a.b	ENSGT00940000157994.c #25	ENSGT00940000153972.A #26	ENSGT00940000154336 #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT01030000234592.B
Episquamata	ANCESTRAL SPECIES	2	ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000161773	ENSGT00940000153123.A #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000166029	ENSGT01030000234590.A.a.b	ENSGT00940000157994.c #25	ENSGT00940000153972.A #26	ENSGT00940000154336 #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT01030000234592.B
Laterata	ANCESTRAL SPECIES	3	ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000161773	ENSGT00940000153123.A #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000166029	ENSGT01030000234590.A.a.b	ENSGT00940000157994.c #25	ENSGT00940000153972.A #26	ENSGT00940000154336 #28	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT01030000234592.B
Common wall lizard	MODERN SPECIES	12	NOX4 (ENSPMRG00000002424) #11	FOLH1 (ENSPMRG00000002456) #12	CHORDC1 (ENSPMRG00000002476) #14	ENSPMRG00000002487	ENSPMRG00000002494	ENSPMRG00000002498	FAT3 (ENSPMRG00000002530) #15	ENSPMRG00000002617	MTNR1B (ENSPMRG00000002623) #16	SLC36A4 (ENSPMRG00000002627) #17	ENSPMRG00000002637 #18	SMCO4 (ENSPMRG00000002647) #19	CMTR2 (ENSPMRG00000008242)	ENSPMRG00000008257 #20	ENSPMRG00000008316 #21	C11orf54 (ENSPMRG00000008327) #22	MED17 (ENSPMRG00000008340) #23	ENSPMRG00000008351	ENSPMRG00000008372	ENSPMRG00000008426	HEPHL1 (ENSPMRG00000008435) #25	PANX1 (ENSPMRG00000008448) #26	ENSPMRG00000008452	ENSPMRG00000008454	GPR83 (ENSPMRG00000008457) #28	MRE11 (ENSPMRG00000008460) #29	ANKRD49 (ENSPMRG00000008465) #30	FUT4 (ENSPMRG00000008469) #32	ENSPMRG00000008502 #33	AMOTL1 (ENSPMRG00000008682) #34	CWC15 (ENSPMRG00000008694) #35
Argentine black and white tegu	MODERN SPECIES	24	NOX4 (ENSSMRG00000009686) #11	FOLH1 (ENSSMRG00000009691) #12	NAALAD2 (ENSSMRG00000009705) #13	CHORDC1 (ENSSMRG00000009707) #14	ENSSMRG00000009708	ENSSMRG00000009714	ENSSMRG00000009720	FAT3 (ENSSMRG00000009743) #15	MTNR1B (ENSSMRG00000009747) #16	SLC36A4 (ENSSMRG00000009758) #17	DEUP1 (ENSSMRG00000009760) #18	SMCO4 (ENSSMRG00000009779) #19	CMTR2 (ENSSMRG00000009796)	ENSSMRG00000009797 #20	ENSSMRG00000009830 #21	C11orf54 (ENSSMRG00000009835) #22	MED17 (ENSSMRG00000009836) #23	VSTM5 (ENSSMRG00000009838) #24	ENSSMRG00000009850	ENSSMRG00000009854	ENSSMRG00000009859	PANX1 (ENSSMRG00000009865) #26	GPR83 (ENSSMRG00000009866) #28	MRE11 (ENSSMRG00000009882) #29	ANKRD49 (ENSSMRG00000009883) #30	C11orf97 (ENSSMRG00000009893) #31	FUT4 (ENSSMRG00000009896) #32	PIWIL4 (ENSSMRG00000009898) #33	AMOTL1 (ENSSMRG00000010190) #34	CWC15 (ENSSMRG00000010192) #35	ENDOD1 (ENSSMRG00000010205)
Toxicofera	ANCESTRAL SPECIES	9	ENSGT00940000155787 #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000161773	ENSGT00940000153123.A #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000166029	ENSGT01030000234590.A.a.b	ENSGT00940000157994.c #25	ENSGT00940000153972.A #26	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT01030000234592.B	ENSGT00950000183168.A
Elapidae	ANCESTRAL SPECIES	10	ENSGT00940000155787.n #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b.i #13	ENSGT00940000154174 #14	ENSGT00940000154981 #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000161773	ENSGT00940000153123.A #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000166029	ENSGT00390000015701	ENSGT00940000153972.A #26	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT01030000234592.B	ENSGT00950000183168.A	ENSGT00940000159074
Elapidae_a	ANCESTRAL SPECIES	41	ENSGT00940000155787.n #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b.i #13	ENSGT00940000154174 #14	ENSGT00940000154981.g #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000161773	ENSGT00940000153123.A #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000166029	ENSGT00390000015701	ENSGT00940000153972.A #26	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT01030000234592.B	ENSGT00950000183168.A	ENSGT00940000159074
Acanthophiinae	ANCESTRAL SPECIES	42	ENSGT00940000155787.n #7	ENSGT01030000234595.A.a #8	ENSGT00940000155336 #10	ENSGT00940000159621 #11	ENSGT01030000234598.b.a.b.k.a #12	ENSGT01030000234598.b.a.b.k.b.i #13	ENSGT00940000154174 #14	ENSGT00940000154981.g #15	ENSGT00940000162341 #16	ENSGT00940000160117 #17	ENSGT00940000153190.B.a #18	ENSGT00390000015987 #19	ENSGT00940000161773	ENSGT00940000153123.A #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000166029	ENSGT00390000015701	ENSGT00940000153972.A #26	ENSGT00390000017288 #29	ENSGT00390000003919 #30	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT01030000234592.B	ENSGT00950000183168.A	ENSGT00940000159074
Eastern brown snake	MODERN SPECIES	33	CTSC (ENSPTXG00000001207) #7	GRM5 (ENSPTXG00000001252) #8	TYR (ENSPTXG00000002601) #10	NOX4 (ENSPTXG00000002912) #11	FOLH1 (ENSPTXG00000002913) #12	NAALAD2 (ENSPTXG00000003043) #13	CHORDC1 (ENSPTXG00000004173) #14	FAT3 (ENSPTXG00000004176) #15	MTNR1B (ENSPTXG00000004180) #16	SLC36A4 (ENSPTXG00000004183) #17	DEUP1 (ENSPTXG00000004188) #18	SMCO4 (ENSPTXG00000004192) #19	CMTR2 (ENSPTXG00000004193)	ENSPTXG00000004196 #20	ENSPTXG00000004210 #21	C11orf54 (ENSPTXG00000004213) #22	MED17 (ENSPTXG00000004217) #23	VSTM5 (ENSPTXG00000004220) #24	ENSPTXG00000004222	ENSPTXG00000004224	HEPHL1 (ENSPTXG00000004241) #25	ENSPTXG00000004730	ENSPTXG00000004732 #26	MRE11 (ENSPTXG00000004736) #29	ANKRD49 (ENSPTXG00000004769) #30	C11orf97 (ENSPTXG00000004770) #31	FUT4 (ENSPTXG00000004772) #32	PIWIL4 (ENSPTXG00000004775) #33	AMOTL1 (ENSPTXG00000004778) #34	CWC15 (ENSPTXG00000004785) #35	ENDOD1 (ENSPTXG00000004786)
Mainland tiger snake	MODERN SPECIES	122	ENSNSUG00000001121 #7	GRM5 (ENSNSUG00000000863) #8	TYR (ENSNSUG00000000045) #10	NOX4 (ENSNSUG00000000016) #11	FOLH1 (ENSNSUG00000018153) #12	NAALAD2 (ENSNSUG00000018152) #13	CHORDC1 (ENSNSUG00000018151) #14	FAT3 (ENSNSUG00000018150) #15	MTNR1B (ENSNSUG00000018149) #16	SLC36A4 (ENSNSUG00000018148) #17	ENSNSUG00000018147 #18	ENSNSUG00000018146	SMCO4 (ENSNSUG00000018145) #19	CMTR2 (ENSNSUG00000018143)	ENSNSUG00000018133 #21	C11orf54 (ENSNSUG00000018132) #22	MED17 (ENSNSUG00000018104) #23	VSTM5 (ENSNSUG00000018095) #24	ENSNSUG00000018091	ENSNSUG00000018089	ENSNSUG00000018003	PANX1 (ENSNSUG00000017999) #26	MRE11 (ENSNSUG00000017996) #29	ANKRD49 (ENSNSUG00000017995) #30	C11orf97 (ENSNSUG00000017994) #31
Blue-lipped sea krait	MODERN SPECIES	8035															TAF1D (ENSLLTG00000015215) #21	C11orf54 (ENSLLTG00000015217) #22	MED17 (ENSLLTG00000015224) #23
Indian cobra	MODERN SPECIES	4	ENSNNAG00000005993 #7	ENSNNAG00000005985 #7	GRM5 (ENSNNAG00000005247) #8	TYR (ENSNNAG00000005074) #10	NOX4 (ENSNNAG00000005040) #11	FOLH1 (ENSNNAG00000004877) #12	NAALAD2 (ENSNNAG00000004784) #13	CHORDC1 (ENSNNAG00000004752) #14	FAT3 (ENSNNAG00000004646) #15	MTNR1B (ENSNNAG00000004609) #16	SLC36A4 (ENSNNAG00000004546) #17	DEUP1 (ENSNNAG00000004400) #18	SMCO4 (ENSNNAG00000004371) #19	ENSNNAG00000004348	ENSNNAG00000004276	C11orf54 (ENSNNAG00000004244) #22	MED17 (ENSNNAG00000004193) #23	VSTM5 (ENSNNAG00000004171) #24	ENSNNAG00000004124	ENSNNAG00000004089	ENSNNAG00000004076 #26	ENSNNAG00000004046 #29	ENSNNAG00000004034 #29	ANKRD49 (ENSNNAG00000004023) #30	C11orf97 (ENSNNAG00000004006) #31	FUT4 (ENSNNAG00000003996) #32	PIWIL4 (ENSNNAG00000003845) #33	AMOTL1 (ENSNNAG00000003274) #34	CWC15 (ENSNNAG00000003179) #35	ENDOD1 (ENSNNAG00000003169)	ENSNNAG00000003155
Lizard	MODERN SPECIES	2	NAALAD2 (ENSACAG00000014471) #13	CHORDC1 (ENSACAG00000014370) #14	ENSACAG00000024003	ENSACAG00000016370	ENSACAG00000040047	ENSACAG00000038029	FAT3 (ENSACAG00000014669) #15	ENSACAG00000029244	ENSACAG00000044248	MTNR1B (ENSACAG00000038163) #16	DEUP1 (ENSACAG00000014823) #18	SMCO4 (ENSACAG00000014597) #19	CMTR2 (ENSACAG00000036088)	ENSACAG00000014591 #20	TAF1D (ENSACAG00000014587) #21	C11orf54 (ENSACAG00000014533) #22	ENSACAG00000041938 #23	ENSACAG00000014462 #23	ENSACAG00000014459 #24	ENSACAG00000014418	ENSACAG00000014403	ENSACAG00000014257 #25	ENSACAG00000014226 #26	MRE11 (ENSACAG00000014110) #29	ANKRD49 (ENSACAG00000014101) #30	C11orf97 (ENSACAG00000028473) #31	FUT4 (ENSACAG00000014099) #32	ENSACAG00000041426	PIWIL4 (ENSACAG00000014070) #33	ENSACAG00000035085	AMOTL1 (ENSACAG00000014015) #34
tuatara	MODERN SPECIES	964									ENSSPUG00000015965 #15	MTNR1B (ENSSPUG00000015946) #16	ENSSPUG00000015933 #17	DEUP1 (ENSSPUG00000015835) #18	SMCO4 (ENSSPUG00000015813) #19	ENSSPUG00000015805 #20	ENSSPUG00000015747 #20	C11orf54 (ENSSPUG00000015667) #22	MED17 (ENSSPUG00000015657) #23	VSTM5 (ENSSPUG00000015648) #24	HEPHL1 (ENSSPUG00000015609) #25	ENSSPUG00000015586 #26	ENSSPUG00000015577	ENSSPUG00000015558	YAP1 (ENSSPUG00000015546)	CFAP300 (ENSSPUG00000015520)	ENSSPUG00000015509	ANGPTL5 (ENSSPUG00000015487)	TRPC6 (ENSSPUG00000015206)	PGR (ENSSPUG00000015094)	ENSSPUG00000015069	ARHGAP42 (ENSSPUG00000015036)	CNTN5 (ENSSPUG00000014995)
Anura	ANCESTRAL SPECIES	528															ENSGT00390000009061 #21	ENSGT00390000017214 #22
Leishan spiny toad	MODERN SPECIES	5	ENSLLEG00000021512	RFC2 (ENSLLEG00000021605)	ENSLLEG00000022266	CLIP2 (ENSLLEG00000022336)	GTF2IRD1 (ENSLLEG00000022903)	ENSLLEG00000024294	GTF2I (ENSLLEG00000024352)	ENSLLEG00000000484	NCF1 (ENSLLEG00000000499)	RCC1L (ENSLLEG00000000519)	CASTOR2 (ENSLLEG00000000547)	ENSLLEG00000000572	ENSLLEG00000000596	ENSLLEG00000000705 #21	ENSLLEG00000000741	C11orf54 (ENSLLEG00000000752) #22	TBX4 (ENSLLEG00000000863)	ENSLLEG00000000955	ENSLLEG00000000989	ENSLLEG00000001065	ENSLLEG00000001072	ENSLLEG00000001079	ENSLLEG00000001084	ENSLLEG00000001091	ENSLLEG00000001098	BCAS3 (ENSLLEG00000001138)	ENSLLEG00000001387	PPM1D (ENSLLEG00000001395)	ENSLLEG00000001422	APPBP2 (ENSLLEG00000001470)	ENSLLEG00000001606
Coelacanth	MODERN SPECIES	250	C1QBP (ENSLACG00000018219)	MIS12 (ENSLACG00000018211)	IFT22 (ENSLACG00000018212)	DERL2 (ENSLACG00000018200)	DHX33 (ENSLACG00000018174)	ENSLACG00000018066	ENSLACG00000018060	ENSLACG00000018018	CUX1 (ENSLACG00000017710)	SH2B2 (ENSLACG00000017508)	PRKRIP1 (ENSLACG00000017486)	ENSLACG00000017371	NCF1 (ENSLACG00000017263)	RCC1L (ENSLACG00000017163)	ENSLACG00000016662 #21	C11orf54 (ENSLACG00000016618) #22	ENSLACG00000015831	ENSLACG00000014091	ENSLACG00000012524	AUTS2 (ENSLACG00000007721)	GALNT17 (ENSLACG00000003791)	ENSLACG00000001761