Euarchontoglires	ANCESTRAL SPECIES	1	ENSGT00940000162409	ENSGT00940000163419	ENSGT00940000160005.A	ENSGT00940000163778	ENSGT00940000163440 #10	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174 #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919	ENSGT00910000147289	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152
Primates	ANCESTRAL SPECIES		ENSGT00940000162409	ENSGT00940000163419	ENSGT00940000160005.A	ENSGT00940000163778	ENSGT00940000163440 #10	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174 #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919	ENSGT00910000147289	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152
Haplorrhini	ANCESTRAL SPECIES		ENSGT00940000162409	ENSGT00940000163419	ENSGT00940000160005.A	ENSGT00940000163778	ENSGT00940000163440 #10	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174 #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919	ENSGT00910000147289	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152
Simiiformes	ANCESTRAL SPECIES		ENSGT00940000160005.A	ENSGT00940000163419	ENSGT00940000162409	ENSGT00940000163440 #10	ENSGT00940000163858	ENSGT00940000163213.a.b #13	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174.s.a.a.a #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288.c #29	ENSGT00390000003919	ENSGT00910000147289	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152
Catarrhini	ANCESTRAL SPECIES	1	ENSGT00940000160005.A	ENSGT00940000163419	ENSGT00940000162409	ENSGT00940000163440 #10	ENSGT00940000163213.a.b #13	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174.s.a.a.a #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00390000013073.a	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288.c #29	ENSGT00390000003919.e	ENSGT00910000147289	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152
Hominoidea	ANCESTRAL SPECIES	1	ENSGT00940000165665.b #8	ENSGT00940000163419.d.a.b	ENSGT00940000163419.c	ENSGT00940000163440.d ##10	ENSGT00940000163213.a.b.b.a.b #13	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174.s.a.a.a.a #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00390000013073.a	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288.c #29	ENSGT00390000003919.e	ENSGT00910000147289	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152
Hominidae	ANCESTRAL SPECIES	1	ENSGT00940000163213.a.b.b.b #7	ENSGT00940000163419.d.a.a	ENSGT00940000163419.c	ENSGT00940000163440.d ##10	ENSGT00940000163213.a.b.b.a.a #11	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174.s.a.a.a.a #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00390000013073.a	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288.c #29	ENSGT00390000003919.e	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152	ENSGT00940000165078.a #36
Orangutan	MODERN SPECIES	2	ENSPPYG00000034343 #7	ENSPPYG00000003760 #8	ENSPPYG00000036641 #9	ENSPPYG00000019959 #10	ENSPPYG00000040269 #11	ENSPPYG00000039594 #12	ENSPPYG00000036793 #13	NAALAD2 (ENSPPYG00000003763) #14	CHORDC1 (ENSPPYG00000003764) #15	FAT3 (ENSPPYG00000003767) #16	MTNR1B (ENSPPYG00000003768) #17	SLC36A4 (ENSPPYG00000003769) #18	DEUP1 (ENSPPYG00000003770) #19	CEP295 (ENSPPYG00000003773) #20	TAF1D (ENSPPYG00000003774) #21	C11orf54 (ENSPPYG00000003775) #22	MED17 (ENSPPYG00000003776) #23	VSTM5 (ENSPPYG00000003777) #24	HEPHL1 (ENSPPYG00000003778) #25	PANX1 (ENSPPYG00000003779) #26	IZUMO1R (ENSPPYG00000003780) #27	GPR83 (ENSPPYG00000041687) #28	MRE11 (ENSPPYG00000037469) #29	ENSPPYG00000041706 #30	ENSPPYG00000029760 #31	FUT4 (ENSPPYG00000037042) #32	PIWIL4 (ENSPPYG00000003783) #33	AMOTL1 (ENSPPYG00000003784) #34	CWC15 (ENSPPYG00000003785) #35	KDM4E (ENSPPYG00000041335) #36	KDM4F (ENSPPYG00000037461) #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	8	ENSGT00940000163213.a.b.b.b #7	ENSGT00940000163419.c	ENSGT00940000163440.d ##10	ENSGT00940000163213.a.b.b.a.a.a.a #11	ENSGT00940000163213.a.b.b.a.a.b #11	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174.s.a.a.a.a #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00390000013073.a	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00390000018018.sb.a.b	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288.c #29	ENSGT00390000003919.e	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152
Homo/Pan group	ANCESTRAL SPECIES	1	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a ##14	ENSGT00940000163778	ENSGT00940000165665.b.d #8	ENSGT00940000163419.c.b	ENSGT00940000163440.d ##10	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174.s.a.a.a.a #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00390000018018.sb.a.b	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288.c #29	ENSGT00390000003919.e	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152
Pan	ANCESTRAL SPECIES	1	ENSGT00940000163440.d ##10	ENSGT00940000163213.a.b.b.a.a.b #11	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174.s.a.a.a.a #15	ENSGT00950000182825.A.a.b.a.b.a.a.a.b	ENSGT00940000167275	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00390000008496.db.b	ENSGT00390000013073.a	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00390000018018.sb.a.b	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288.c #29	ENSGT00390000003919.e	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152
Chimpanzee	MODERN SPECIES	2	ENSPTRG00000034335 ##10	NAALAD2 (ENSPTRG00000004163) #14	CHORDC1 (ENSPTRG00000004164) #15	ENSPTRG00000051439	FAT3 (ENSPTRG00000004168) #16	MTNR1B (ENSPTRG00000004170) #17	SLC36A4 (ENSPTRG00000004171) #18	ENSPTRG00000043441	ENSPTRG00000043610	DEUP1 (ENSPTRG00000004172) #19	SMCO4 (ENSPTRG00000046135)	ENSPTRG00000045360	ENSPTRG00000048746	CEP295 (ENSPTRG00000004175) #20	TAF1D (ENSPTRG00000032462) #21	C11H11orf54 (ENSPTRG00000004177) #22	MED17 (ENSPTRG00000004178) #23	VSTM5 (ENSPTRG00000052018) #24	HEPHL1 (ENSPTRG00000004180) #25	PANX1 (ENSPTRG00000004181) #26	ENSPTRG00000044783	IZUMO1R (ENSPTRG00000004182) #27	GPR83 (ENSPTRG00000004183) #28	MRE11 (ENSPTRG00000004184) #29	ANKRD49 (ENSPTRG00000004185)	C11H11orf97 (ENSPTRG00000047025) #31	FUT4 (ENSPTRG00000028425) #32	PIWIL4 (ENSPTRG00000004187) #33	AMOTL1 (ENSPTRG00000004188) #34	CWC15 (ENSPTRG00000044239) #35	KDM4D (ENSPTRG00000004190)
Bonobo	MODERN SPECIES	2	NAALAD2 (ENSPPAG00000040316) #14	CHORDC1 (ENSPPAG00000029245) #15	ENSPPAG00000027721	ENSPPAG00000040312	ENSPPAG00000042139 #16	MTNR1B (ENSPPAG00000030637) #17	ENSPPAG00000039538	SLC36A4 (ENSPPAG00000038875) #18	ENSPPAG00000043411	DEUP1 (ENSPPAG00000028857) #19	SMCO4 (ENSPPAG00000016913)	ENSPPAG00000037680	ENSPPAG00000000088	CEP295 (ENSPPAG00000041025) #20	TAF1D (ENSPPAG00000034322) #21	C11orf54 (ENSPPAG00000038203) #22	MED17 (ENSPPAG00000038273) #23	VSTM5 (ENSPPAG00000037419) #24	HEPHL1 (ENSPPAG00000040046) #25	PANX1 (ENSPPAG00000040074) #26	ENSPPAG00000026114	IZUMO1R (ENSPPAG00000041423) #27	GPR83 (ENSPPAG00000039550) #28	MRE11 (ENSPPAG00000034731) #29	ANKRD49 (ENSPPAG00000037946)	C11orf97 (ENSPPAG00000031103) #31	FUT4 (ENSPPAG00000021481) #32	PIWIL4 (ENSPPAG00000031181) #33	AMOTL1 (ENSPPAG00000036699) #34	CWC15 (ENSPPAG00000033609) #35	KDM4E (ENSPPAG00000022047) #36
Human	MODERN SPECIES	2	TRIM64B (ENSG00000189253) ##10	TRIM49D1 (ENSG00000223417) #11	TRIM49D2 (ENSG00000233802) #11	TRIM64 (ENSG00000204450) ##10	TRIM49C (ENSG00000204449) #8	UBTFL1 (ENSG00000255009)	NAALAD2 (ENSG00000077616) #14	CHORDC1 (ENSG00000110172) #15	FAT3 (ENSG00000165323) #16	MTNR1B (ENSG00000134640) #17	SLC36A4 (ENSG00000180773) #18	DEUP1 (ENSG00000165325) #19	SMCO4 (ENSG00000166002)	CEP295 (ENSG00000166004) #20	TAF1D (ENSG00000166012) #21	C11orf54 (ENSG00000182919) #22	ENSG00000284057	MED17 (ENSG00000042429) #23	VSTM5 (ENSG00000214376) #24	HEPHL1 (ENSG00000181333) #25	PANX1 (ENSG00000110218) #26	IZUMO1R (ENSG00000183560) #27	GPR83 (ENSG00000123901) #28	MRE11 (ENSG00000020922) #29	ANKRD49 (ENSG00000168876)	C11orf97 (ENSG00000257057) #31	PIWIL4 (ENSG00000134627) #33	FUT4 (ENSG00000196371) #32	AMOTL1 (ENSG00000166025) #34	CWC15 (ENSG00000150316) #35	KDM4D (ENSG00000186280)
Gorilla	MODERN SPECIES	2	TYR (ENSGGOG00000009122)	ENSGGOG00000003220	ENSGGOG00000026540 #11	ENSGGOG00000008355 ##10	ENSGGOG00000040268 #7	NAALAD2 (ENSGGOG00000034824) #14	CHORDC1 (ENSGGOG00000027396) #15	FAT3 (ENSGGOG00000017065) #16	MTNR1B (ENSGGOG00000013924) #17	SLC36A4 (ENSGGOG00000028079) #18	DEUP1 (ENSGGOG00000016147) #19	SMCO4 (ENSGGOG00000011166)	ENSGGOG00000008382	CEP295 (ENSGGOG00000009396) #20	TAF1D (ENSGGOG00000028407) #21	C11orf54 (ENSGGOG00000014705) #22	MED17 (ENSGGOG00000010401) #23	VSTM5 (ENSGGOG00000010409) #24	HEPHL1 (ENSGGOG00000000624) #25	PANX (ENSGGOG00000005596) #26	ENSGGOG00000037261	IZUMO1R (ENSGGOG00000014840) #27	GPR83 (ENSGGOG00000007694) #28	MRE11 (ENSGGOG00000008192) #29	ANKRD49 (ENSGGOG00000008207)	C11orf97 (ENSGGOG00000036219) #31	PIWIL4 (ENSGGOG00000016276) #33	AMOTL1 (ENSGGOG00000001033) #34	CWC15 (ENSGGOG00000011926) #35	KDM4D (ENSGGOG00000010102)	SRSF8 (ENSGGOG00000022679)
Gibbon	MODERN SPECIES	5	TRIM77 (ENSNLEG00000015886)	ENSNLEG00000015860 #8	ENSNLEG00000010471	ENSNLEG00000007077 ##10	ENSNLEG00000030564 #13	NAALAD2 (ENSNLEG00000007078) #14	CHORDC1 (ENSNLEG00000007079) #15	ENSNLEG00000028688	FAT3 (ENSNLEG00000007081) #16	ENSNLEG00000027382 #17	SLC36A4 (ENSNLEG00000028135) #18	DEUP1 (ENSNLEG00000007089) #19	SMCO4 (ENSNLEG00000027353)	ENSNLEG00000030226	CEP295 (ENSNLEG00000007093) #20	C11orf54 (ENSNLEG00000007095) #22	TAF1D (ENSNLEG00000007094) #21	MED17 (ENSNLEG00000007096) #23	VSTM5 (ENSNLEG00000007101) #24	HEPHL1 (ENSNLEG00000007103) #25	PANX1 (ENSNLEG00000007105) #26	ENSNLEG00000007107	IZUMO1R (ENSNLEG00000007108) #27	GPR83 (ENSNLEG00000007109) #28	MRE11 (ENSNLEG00000007111) #29	ANKRD49 (ENSNLEG00000007115)	ENSNLEG00000033459	C11orf97 (ENSNLEG00000007117) #31	ENSNLEG00000007118 #32	PIWIL4 (ENSNLEG00000007119) #33	AMOTL1 (ENSNLEG00000007120) #34
Cercopithecidae	ANCESTRAL SPECIES		ENSGT00940000163213.a.b.c.b #13	ENSGT00940000163419	ENSGT00940000163440.b.a #10	ENSGT00940000160005.A.h	ENSGT00940000163213.a.b.c.a #13	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174.s.a.a.a #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00390000013073.a	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288.c #29	ENSGT00390000003919.e	ENSGT00910000147289	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152
Cercopithecinae	ANCESTRAL SPECIES	3	ENSGT00940000163440.b.b #10	ENSGT00940000162409	ENSGT00940000163419.g	ENSGT00940000163440.b.a #10	ENSGT00940000163213.a.b.c.a #13	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174.s.a.a.a #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00390000013073.a	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288.c #29	ENSGT00390000003919.e	ENSGT00910000147289	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152
Cercopithecinae_a	ANCESTRAL SPECIES	2	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a ##14	ENSGT00940000163778	ENSGT00940000163440.b.a #10	ENSGT00940000163213.a.b.d #13	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174.s.a.a.a #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00390000013073.a	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288.c #29	ENSGT00390000003919.e	ENSGT00910000147289	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152
Macaca	ANCESTRAL SPECIES	2	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a ##14	ENSGT00940000163778	ENSGT00940000163440.b.a #10	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.b.a.a.a.b.a.b.b.a.b	ENSGT00940000154174.s.a.a.a #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00390000013073.a	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288.c #29	ENSGT00390000003919.e	ENSGT00910000147289	ENSGT00520000058823 #31	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152	ENSGT00940000165078.a #36
Macaca_a	ANCESTRAL SPECIES	3	ENSGT00940000163440.b.a #10	ENSGT00940000163419.g	ENSGT00940000163440.b.b #10	ENSGT00940000160005.A.g.a	ENSGT00940000163213.a.b.c.a #13	ENSGT00940000163440.a.b.a #10	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174.s.a.a.a #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00390000017288.c #29	ENSGT00390000003919.e	ENSGT00520000058823 #31	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152	ENSGT00940000165078.a #36	ENSGT00940000165078.b #37	ENSGT00940000154883.g.a.a
Crab-eating macaque	MODERN SPECIES	5	ENSMFAG00000033361	ENSMFAG00000044028	ENSMFAG00000041752 #10	ENSMFAG00000051720	ENSMFAG00000033612 #13	ENSMFAG00000052719 #10	NAALAD2 (ENSMFAG00000034412) #14	CHORDC1 (ENSMFAG00000035565) #15	FAT3 (ENSMFAG00000035883) #16	ENSMFAG00000055749	MTNR1B (ENSMFAG00000038271) #17	SLC36A4 (ENSMFAG00000041537) #18	DEUP1 (ENSMFAG00000032572) #19	CEP295 (ENSMFAG00000041174) #20	TAF1D (ENSMFAG00000039236) #21	C11orf54 (ENSMFAG00000039634) #22	ENSMFAG00000048679	MED17 (ENSMFAG00000003118) #23	VSTM5 (ENSMFAG00000054321) #24	HEPHL1 (ENSMFAG00000046086) #25	PANX1 (ENSMFAG00000002464) #26	IZUMO1R (ENSMFAG00000030684) #27	MRE11 (ENSMFAG00000039328) #29	ANKRD49 (ENSMFAG00000038557)	C11orf97 (ENSMFAG00000044586) #31	PIWIL4 (ENSMFAG00000042631) #33	AMOTL1 (ENSMFAG00000032749) #34	CWC15 (ENSMFAG00000044052) #35	KDM4D (ENSMFAG00000024894)	ENSMFAG00000040102	KDM4F (ENSMFAG00000059067) #37
Pig-tailed macaque	MODERN SPECIES	109	ENSMNEG00000041095 #13	ENSMNEG00000044387	ENSMNEG00000009246	NAALAD2 (ENSMNEG00000042681) #14	CHORDC1 (ENSMNEG00000039325) #15	ENSMNEG00000013846	ENSMNEG00000032920	FAT3 (ENSMNEG00000033595) #16	MTNR1B (ENSMNEG00000031635) #17	SLC36A4 (ENSMNEG00000044920) #18	DEUP1 (ENSMNEG00000041961) #19	SMCO4 (ENSMNEG00000013588)	ENSMNEG00000042890	CEP295 (ENSMNEG00000041554) #20	TAF1D (ENSMNEG00000040024) #21	C11orf54 (ENSMNEG00000013934) #22	MED17 (ENSMNEG00000028879) #23	VSTM5 (ENSMNEG00000045447) #24	HEPHL1 (ENSMNEG00000038689) #25	PANX1 (ENSMNEG00000035007) #26	IZUMO1R (ENSMNEG00000030482) #27	GPR83 (ENSMNEG00000043160) #28	MRE11 (ENSMNEG00000029815) #29	ANKRD49 (ENSMNEG00000034043)	ENSMNEG00000020136	C11orf97 (ENSMNEG00000031514) #31	PIWIL4 (ENSMNEG00000037456) #33	AMOTL1 (ENSMNEG00000044021) #34	CWC15 (ENSMNEG00000033968) #35	KDM4D (ENSMNEG00000026134)	ENSMNEG00000035040
Cercopithecinae_b	ANCESTRAL SPECIES	21					ENSGT00940000162409	ENSGT00940000163213.a.a ##13	ENSGT00940000167275	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00390000013073.a	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288.c #29	ENSGT00390000003919.e	ENSGT00910000147289	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152
Olive baboon	MODERN SPECIES	3	ENSPANG00000022721 #13	ENSPANG00000049769	ENSPANG00000047081 ##13	ENSPANG00000045071	ENSPANG00000038934	ENSPANG00000040125	FAT3 (ENSPANG00000018585) #16	MTNR1B (ENSPANG00000018013) #17	ENSPANG00000044418	ENSPANG00000047752	SLC36A4 (ENSPANG00000004551) #18	DEUP1 (ENSPANG00000010678) #19	SMCO4 (ENSPANG00000000062)	CEP295 (ENSPANG00000008341) #20	TAF1D (ENSPANG00000018408) #21	C11orf54 (ENSPANG00000008370) #22	MED17 (ENSPANG00000022409) #23	VSTM5 (ENSPANG00000004039) #24	ENSPANG00000045474	HEPHL1 (ENSPANG00000019176) #25	PANX1 (ENSPANG00000019663) #26	ENSPANG00000040070	IZUMO1R (ENSPANG00000034439) #27	ENSPANG00000040668	MRE11 (ENSPANG00000017475) #29	ENSPANG00000032105 #31	FUT4 (ENSPANG00000051031) #32	ENSPANG00000046304	PIWIL4 (ENSPANG00000016066) #33	AMOTL1 (ENSPANG00000018871) #34	CWC15 (ENSPANG00000019125) #35
Cercopithecinae_d	ANCESTRAL SPECIES	45							ENSGT00940000167275	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00390000013073.a	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT00910000147855	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288.c #29	ENSGT00390000003919.e	ENSGT00910000147289	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35
Drill	MODERN SPECIES	1152							ENSMLEG00000034203	FAT3 (ENSMLEG00000038737) #16	MTNR1B (ENSMLEG00000039776) #17	SLC36A4 (ENSMLEG00000030119) #18	DEUP1 (ENSMLEG00000037342) #19	SMCO4 (ENSMLEG00000022536)	ENSMLEG00000001837	CEP295 (ENSMLEG00000033140) #20	TAF1D (ENSMLEG00000039639) #21	C11orf54 (ENSMLEG00000035235) #22	MED17 (ENSMLEG00000027939) #23	ENSMLEG00000035673	VSTM5 (ENSMLEG00000027079) #24	HEPHL1 (ENSMLEG00000038476) #25	PANX1 (ENSMLEG00000041168) #26	IZUMO1R (ENSMLEG00000033707) #27	GPR83 (ENSMLEG00000032323) #28
Sooty mangabey	MODERN SPECIES	216								ENSCATG00000037733 #16	MTNR1B (ENSCATG00000033084) #17	SLC36A4 (ENSCATG00000034032) #18	DEUP1 (ENSCATG00000035569) #19	SMCO4 (ENSCATG00000020187)	ENSCATG00000020258	CEP295 (ENSCATG00000038930) #20	TAF1D (ENSCATG00000042343) #21	C11orf54 (ENSCATG00000035750) #22	MED17 (ENSCATG00000008395) #23	ENSCATG00000039624	VSTM5 (ENSCATG00000040111) #24	HEPHL1 (ENSCATG00000041665) #25	PANX1 (ENSCATG00000002907) #26	GPR83 (ENSCATG00000009776) #28	MRE11 (ENSCATG00000040989) #29	ANKRD49 (ENSCATG00000032771)	ENSCATG00000019568	C11orf97 (ENSCATG00000029479) #31	PIWIL4 (ENSCATG00000030289) #33	AMOTL1 (ENSCATG00000035778) #34
Vervet Monkey	MODERN SPECIES		ENSCSAG00000003564 ##13	ENSCSAG00000003560 #10	ENSCSAG00000003550 #13	NAALAD2 (ENSCSAG00000003546) #14	CHORDC1 (ENSCSAG00000003537) #15	ENSCSAG00000000609	FAT3 (ENSCSAG00000003512) #16	ENSCSAG00000003478	MTNR1B (ENSCSAG00000003473) #17	SLC36A4 (ENSCSAG00000003469) #18	DEUP1 (ENSCSAG00000003465) #19	SMCO4 (ENSCSAG00000000608)	ENSCSAG00000003461	CEP295 (ENSCSAG00000003445) #20	TAF1D (ENSCSAG00000003431) #21	C11orf54 (ENSCSAG00000003429) #22	MED17 (ENSCSAG00000003426) #23	VSTM5 (ENSCSAG00000003423) #24	HEPHL1 (ENSCSAG00000003418) #25	PANX1 (ENSCSAG00000003406) #26	IZUMO1R (ENSCSAG00000003400) #27	GPR83 (ENSCSAG00000003397) #28	MRE11 (ENSCSAG00000003391) #29	ANKRD49 (ENSCSAG00000003379)	C11orf97 (ENSCSAG00000003377) #31	FUT4 (ENSCSAG00000000607) #32	PIWIL4 (ENSCSAG00000003360) #33	AMOTL1 (ENSCSAG00000003315) #34	CWC15 (ENSCSAG00000003299) #35	KDM4D (ENSCSAG00000003295)	KDM4E (ENSCSAG00000003292) #36
Rhinopithecus	ANCESTRAL SPECIES	449								ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00390000013073.a.b	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24
Black snub-nosed monkey	MODERN SPECIES	2476										ENSRBIG00000037835 #18	DEUP1 (ENSRBIG00000039067) #19	SMCO4 (ENSRBIG00000021343)	ENSRBIG00000042168	CEP295 (ENSRBIG00000039647) #20	TAF1D (ENSRBIG00000031274) #21	C11orf54 (ENSRBIG00000030764) #22	MED17 (ENSRBIG00000040881) #23	VSTM5 (ENSRBIG00000036607) #24	ENSRBIG00000022813
Golden snub-nosed monkey	MODERN SPECIES	3179							ENSRROG00000028601 #16	MTNR1B (ENSRROG00000016923) #17	SLC36A4 (ENSRROG00000029629) #18	DEUP1 (ENSRROG00000014120) #19	SMCO4 (ENSRROG00000028523)	ENSRROG00000044461	ENSRROG00000043758	CEP295 (ENSRROG00000040195) #20	TAF1D (ENSRROG00000036707) #21	C11orf54 (ENSRROG00000038456) #22	MED17 (ENSRROG00000033837) #23	VSTM5 (ENSRROG00000008637) #24
Platyrrhini	ANCESTRAL SPECIES	3	ENSGT00940000163778	ENSGT00940000160005.A.i	ENSGT00940000163440 #10	ENSGT00940000163419.j	ENSGT00940000165665 #8	ENSGT00940000163213.a.b #13	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174.s.a.a.a #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288.c #29	ENSGT00390000003919	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152	ENSGT00940000165078 #37
Cebidae	ANCESTRAL SPECIES		ENSGT01030000234598.b.a.b.k.a ##14	ENSGT00940000163778	ENSGT00940000160005.A.i	ENSGT00940000163440 #10	ENSGT00940000163419.j	ENSGT00940000163213.a.b #13	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174.s.a.a.a #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288.c #29	ENSGT00390000003919	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158.e.b #34	ENSGT00940000160158.e.a #34	ENSGT00390000012084 #35	ENSGT00940000162152
Cebidae_a	ANCESTRAL SPECIES	73	ENSGT01030000234598.b.a.b.k.a ##14	ENSGT00940000163778	ENSGT00940000160005.A.i	ENSGT00940000163440 #10	ENSGT00940000163419.j	ENSGT00940000163213.a.b #13	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174.s.a.a.a #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288.c #29	ENSGT00390000003919	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158.e.b #34
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	241									ENSCCAG00000019974	FAT3 (ENSCCAG00000029618) #16	SLC36A4 (ENSCCAG00000029908) #18	DEUP1 (ENSCCAG00000025548) #19	SMCO4 (ENSCCAG00000019420)	CEP295 (ENSCCAG00000025065) #20	TAF1D (ENSCCAG00000018289) #21	ENSCCAG00000025059 #22	MED17 (ENSCCAG00000034414) #23	VSTM5 (ENSCCAG00000021584) #24	HEPHL1 (ENSCCAG00000030082) #25	PANX1 (ENSCCAG00000007465) #26	IZUMO1R (ENSCCAG00000021617) #27	GPR83 (ENSCCAG00000028755) #28	MRE11 (ENSCCAG00000013972) #29	ANKRD49 (ENSCCAG00000027797)	C11orf97 (ENSCCAG00000029425) #31	FUT4 (ENSCCAG00000013593) #32	ENSCCAG00000021211	PIWIL4 (ENSCCAG00000017581) #33	ENSCCAG00000036203 #34
Capuchin	MODERN SPECIES	42	ENSCCAG00000035298	ITPKB (ENSCCAG00000017443)	STUM (ENSCCAG00000027365)	PARP1 (ENSCCAG00000033484)	LIN9 (ENSCCAG00000024893)	MIXL1 (ENSCCAG00000030603)	ACBD3 (ENSCCAG00000029038)	ENSCCAG00000021678	SDE2 (ENSCCAG00000033106)	ENSCCAG00000024966	PYCR2 (ENSCCAG00000029202)	ENSCCAG00000030395	TMEM63A (ENSCCAG00000022581)	EPHX1 (ENSCCAG00000024699)	SRP9 (ENSCCAG00000034464)	ENSCCAG00000025068 #22	ENAH (ENSCCAG00000026712)	LBR (ENSCCAG00000018433)	ENSCCAG00000017821	DNAH14 (ENSCCAG00000023187)	ENSCCAG00000023109	CNIH3 (ENSCCAG00000018443)	WDR26 (ENSCCAG00000035904)	CNIH4 (ENSCCAG00000037449)	NVL (ENSCCAG00000037416)	DEGS1 (ENSCCAG00000037018)	FBXO28 (ENSCCAG00000019791)	TP53BP2 (ENSCCAG00000029817)	CAPN2 (ENSCCAG00000021862)	CAPN8 (ENSCCAG00000030926)	SUSD4 (ENSCCAG00000002755)
Bolivian squirrel monkey	MODERN SPECIES	188					ENSSBOG00000020924	ENSSBOG00000030835 #13	NAALAD2 (ENSSBOG00000025125) #14	ENSSBOG00000023416 #15	FAT3 (ENSSBOG00000020939) #16	MTNR1B (ENSSBOG00000020942) #17	SLC36A4 (ENSSBOG00000022344) #18	DEUP1 (ENSSBOG00000026759) #19	SMCO4 (ENSSBOG00000011877)	CEP295 (ENSSBOG00000019495) #20	TAF1D (ENSSBOG00000027735) #21	C11orf54 (ENSSBOG00000032062) #22	MED17 (ENSSBOG00000003072) #23	VSTM5 (ENSSBOG00000025938) #24	HEPHL1 (ENSSBOG00000034453) #25	PANX1 (ENSSBOG00000009703) #26	IZUMO1R (ENSSBOG00000021841) #27	GPR83 (ENSSBOG00000024347) #28	MRE11 (ENSSBOG00000016957) #29	ANKRD49 (ENSSBOG00000034549)	C11orf97 (ENSSBOG00000017516) #31	FUT4 (ENSSBOG00000020691) #32	PIWIL4 (ENSSBOG00000024534) #33
Mas night monkey	MODERN SPECIES	1013	ENSANAG00000025882	ENSANAG00000023802 #8	ENSANAG00000028974	NAALAD2 (ENSANAG00000021262) #14	CHORDC1 (ENSANAG00000024414) #15	ENSANAG00000023865	FAT3 (ENSANAG00000026539) #16	MTNR1B (ENSANAG00000021351) #17	SLC36A4 (ENSANAG00000028156) #18	DEUP1 (ENSANAG00000031473) #19	SMCO4 (ENSANAG00000015761)	ENSANAG00000029028	CEP295 (ENSANAG00000032138) #20	TAF1D (ENSANAG00000022083) #21	ENSANAG00000029536	C11orf54 (ENSANAG00000033486) #22	MED17 (ENSANAG00000032438) #23	VSTM5 (ENSANAG00000022799) #24	HEPHL1 (ENSANAG00000030738) #25	PANX1 (ENSANAG00000030398) #26	IZUMO1R (ENSANAG00000030382) #27	GPR83 (ENSANAG00000021555) #28	ENSANAG00000010232	MRE11 (ENSANAG00000020274) #29	ANKRD49 (ENSANAG00000030055)	C11orf97 (ENSANAG00000023746) #31	FUT4 (ENSANAG00000011701) #32	PIWIL4 (ENSANAG00000031191) #33	AMOTL1 (ENSANAG00000033879) #34
Tarsier	MODERN SPECIES	1298														ENSTSYG00000014254 ##20	TAF1D (ENSTSYG00000014258) #21	CUNH11orf54 (ENSTSYG00000000521) #22	MED17 (ENSTSYG00000009789) #23	VSTM5 (ENSTSYG00000012692) #24
Strepsirrhini	ANCESTRAL SPECIES	6	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a ##14	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174 #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152	ENSGT01030000234592.B
Lemuriformes	ANCESTRAL SPECIES	13	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a ##14	ENSGT00940000160005.A.l	ENSGT00940000163440 #10	ENSGT00940000160005.A.k	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174 #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152	ENSGT01030000234592.B
Lemuriformes_a	ANCESTRAL SPECIES	147									ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000164415	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152.a
Coquerels sifaka	MODERN SPECIES	694								ENSPCOG00000026263	FAT3 (ENSPCOG00000014723) #16	MTNR1B (ENSPCOG00000011958) #17	SLC36A4 (ENSPCOG00000023046) #18	DEUP1 (ENSPCOG00000006729) #19	SMCO4 (ENSPCOG00000026449)	CEP295 (ENSPCOG00000004897) #20	TAF1D (ENSPCOG00000018649) #21	C11orf54 (ENSPCOG00000017307) #22	MED17 (ENSPCOG00000018257) #23
Greater bamboo lemur	MODERN SPECIES	414								ENSPSMG00000021720	FAT3 (ENSPSMG00000021711) #16	MTNR1B (ENSPSMG00000021687) #17	SLC36A4 (ENSPSMG00000021672) #18	DEUP1 (ENSPSMG00000021664) #19	SMCO4 (ENSPSMG00000021635)	CEP295 (ENSPSMG00000021623) #20	TAF1D (ENSPSMG00000021588) #21	C11orf54 (ENSPSMG00000021573) #22	MED17 (ENSPSMG00000021504) #23	VSTM5 (ENSPSMG00000021436) #24	ENSPSMG00000021429	ENSPSMG00000021414	HEPHL1 (ENSPSMG00000021408) #25	PANX1 (ENSPSMG00000021384) #26	IZUMO1R (ENSPSMG00000021373) #27	GPR83 (ENSPSMG00000021362) #28	ENSPSMG00000021347	MRE11 (ENSPSMG00000021306) #29	ANKRD49 (ENSPSMG00000021206)	C11orf97 (ENSPSMG00000021201) #31	FUT4 (ENSPSMG00000021197) #32	PIWIL4 (ENSPSMG00000021185) #33	AMOTL1 (ENSPSMG00000021101) #34
Mouse lemur	MODERN SPECIES	27	CTSC (ENSMICG00000002445)	GRM5 (ENSMICG00000002451)	TYR (ENSMICG00000037850)	NOX4 (ENSMICG00000014398)	ENSMICG00000042150 ##14	ENSMICG00000013580 #8	NAALAD2 (ENSMICG00000015630) #14	ENSMICG00000015646 #15	ENSMICG00000031389 #16	MTNR1B (ENSMICG00000043189) #17	SLC36A4 (ENSMICG00000033063) #18	DEUP1 (ENSMICG00000017876) #19	SMCO4 (ENSMICG00000017877)	CEP295 (ENSMICG00000017878) #20	TAF1D (ENSMICG00000034947) #21	C11orf54 (ENSMICG00000028510) #22	ENSMICG00000014697 #23	VSTM5 (ENSMICG00000045625) #24	HEPHL1 (ENSMICG00000006401) #25	PANX1 (ENSMICG00000006408) #26	IZUMO1R (ENSMICG00000031112) #27	GPR83 (ENSMICG00000028902) #28	ENSMICG00000027455 #29	ANKRD49 (ENSMICG00000013505)	C11orf97 (ENSMICG00000043866) #31	FUT4 (ENSMICG00000043071) #32	PIWIL4 (ENSMICG00000006375) #33	ENSMICG00000041717	AMOTL1 (ENSMICG00000001878) #34	ENSMICG00000036230 #15	CWC15 (ENSMICG00000042790) #35
Bushbaby	MODERN SPECIES	116	GRM5 (ENSOGAG00000003814)	ENSOGAG00000024204	NOX4 (ENSOGAG00000012261)	FOLH1 (ENSOGAG00000002014) ##14	NAALAD2 (ENSOGAG00000011836) #14	CHORDC1 (ENSOGAG00000003523) #15	ENSOGAG00000030993	ENSOGAG00000015055	FAT3 (ENSOGAG00000033165) #16	MTNR1B (ENSOGAG00000031018) #17	SLC36A4 (ENSOGAG00000006967) #18	DEUP1 (ENSOGAG00000007123) #19	SMCO4 (ENSOGAG00000016748)	CEP295 (ENSOGAG00000002516) #20	ENSOGAG00000002521 #21	C11orf54 (ENSOGAG00000002523) #22	MED17 (ENSOGAG00000002525) #23	VSTM5 (ENSOGAG00000030661) #24	ENSOGAG00000026605	ENSOGAG00000033509	ENSOGAG00000034157	HEPHL1 (ENSOGAG00000015952) #25	PANX1 (ENSOGAG00000015294) #26	IZUMO1R (ENSOGAG00000002522) #27	GPR83 (ENSOGAG00000002520) #28	MRE11 (ENSOGAG00000012154) #29	ANKRD49 (ENSOGAG00000012155)	C11orf97 (ENSOGAG00000033264) #31	FUT4 (ENSOGAG00000025107) #32	PIWIL4 (ENSOGAG00000012156) #33	AMOTL1 (ENSOGAG00000003989) #34
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a ##14	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174 #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152	ENSGT01030000234592.B
Glires	ANCESTRAL SPECIES	1	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a ##14	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174 #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152	ENSGT01030000234592.B
Lagomorpha	ANCESTRAL SPECIES	5	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a ##14	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174 #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152	ENSGT01030000234592.B
Rabbit	MODERN SPECIES		FOLH1 (ENSOCUG00000026120) ##14	TRIM77 (ENSOCUG00000026390)	ENSOCUG00000008705	ENSOCUG00000027036	ENSOCUG00000011049	ENSOCUG00000036248	NAALAD2 (ENSOCUG00000014137) #14	ENSOCUG00000014147 #15	ENSOCUG00000023399	FAT3 (ENSOCUG00000007427) #16	MTNR1B (ENSOCUG00000008196) #17	SLC36A4 (ENSOCUG00000000649) #18	DEUP1 (ENSOCUG00000000199) #19	CEP295 (ENSOCUG00000029678) #20	ENSOCUG00000001096 #21	C11orf54 (ENSOCUG00000012810) #22	MED17 (ENSOCUG00000012818) #23	VSTM5 (ENSOCUG00000026554) #24	ENSOCUG00000029520	HEPHL1 (ENSOCUG00000009466) #25	PANX1 (ENSOCUG00000009473) #26	IZUMO1R (ENSOCUG00000013431) #27	GPR83 (ENSOCUG00000015502) #28	MRE11 (ENSOCUG00000014899) #29	ANKRD49 (ENSOCUG00000014912)	ENSOCUG00000033194	C11orf97 (ENSOCUG00000034472) #31	FUT4 (ENSOCUG00000014204) #32	PIWIL4 (ENSOCUG00000002860) #33	AMOTL1 (ENSOCUG00000001078) #34	CWC15 (ENSOCUG00000001629) #35
Pika	MODERN SPECIES	3920																C11orf54 (ENSOPRG00000000752) #22
Rodentia	ANCESTRAL SPECIES	1	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a ##14	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174 #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00940000169594	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152
Rodentia_B	ANCESTRAL SPECIES	23						ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174 #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00940000169594	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152
Kangaroo rat	MODERN SPECIES	433										Fat3 (ENSDORG00000024314) #16	Mtnr1b (ENSDORG00000026210) #17	ENSDORG00000002749	Slc36a4 (ENSDORG00000027198) #18	Deup1 (ENSDORG00000011685) #19	Smco4 (ENSDORG00000001107)	4931406C07Rik (ENSDORG00000005004) #22	Med17 (ENSDORG00000005005) #23	Vstm5 (ENSDORG00000004620) #24	Hephl1 (ENSDORG00000005176) #25	ENSDORG00000028004	Izumo1r (ENSDORG00000005007) #27	Gpr83 (ENSDORG00000004374) #28	ENSDORG00000004828 #29	Iws1 (ENSDORG00000007385)	Myo7b (ENSDORG00000015044)	Gpr17 (ENSDORG00000015052)	Lims2 (ENSDORG00000015051)	Wdr33 (ENSDORG00000023513)	Polr2d (ENSDORG00000026897)	Ammecr1l (ENSDORG00000028104)	Sap130 (ENSDORG00000015563)
Myomorpha	ANCESTRAL SPECIES	23						ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174 #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152	ENSGT01030000234592.B
Muroidea	ANCESTRAL SPECIES	29						ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174 #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152	ENSGT01030000234592.B
Upper Galilee mountains blind mole rat	MODERN SPECIES	1827													Deup1 (ENSNGAG00000015010) #19	Smco4 (ENSNGAG00000019710)	Cep295 (ENSNGAG00000020811) #20	4931406C07Rik (ENSNGAG00000019210) #22	Med17 (ENSNGAG00000005765) #23	Vstm5 (ENSNGAG00000008846) #24	Hephl1 (ENSNGAG00000012499) #25	ENSNGAG00000004656	Panx1 (ENSNGAG00000014760) #26	Izumo1r (ENSNGAG00000009610) #27	Gpr83 (ENSNGAG00000015036) #28	Mre11a (ENSNGAG00000010330) #29	Ankrd49 (ENSNGAG00000012789)	1700012B09Rik (ENSNGAG00000013078) #31	Piwil4 (ENSNGAG00000022297) #33	Amotl1 (ENSNGAG00000012913) #34	Cwc15 (ENSNGAG00000016450) #35	Kdm4d (ENSNGAG00000019223)	Endod1 (ENSNGAG00000019861)
Muroidea_A	ANCESTRAL SPECIES	23	ENSGT00940000163044	ENSGT00440000039287	ENSGT00950000183005.b.c.a	ENSGT00940000160844.a	ENSGT00950000183005.b.c.b	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174 #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152	ENSGT01030000234592.B
Cricetidae	DUPLICATION
Cricetidae	ANCESTRAL SPECIES	4	ENSGT00940000154131.f.a.a.b	ENSGT00940000163044	ENSGT00440000039287	ENSGT00950000183005.b.c.a	ENSGT00940000160844.a	ENSGT00950000183005.b.c.b	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174 #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214.m #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152	ENSGT01030000234592.B
Cricetidae_B	ANCESTRAL SPECIES	61		ENSGT00940000163044	ENSGT00440000039287	ENSGT00950000183005.b.c.a	ENSGT00940000160844.a	ENSGT00950000183005.b.c.b	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174 #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214.m #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152
Northern American deer mouse	MODERN SPECIES	20	ENSPEMG00000009529	ENSPEMG00000004149	Mbd3l1 (ENSPEMG00000009423)	Zfp558 (ENSPEMG00000025515)	ENSPEMG00000002125	Naalad2 (ENSPEMG00000018071) #14	Chordc1 (ENSPEMG00000030600) #15	ENSPEMG00000031155	Fat3 (ENSPEMG00000013197) #16	Mtnr1b (ENSPEMG00000000316) #17	Slc36a4 (ENSPEMG00000023886) #18	Deup1 (ENSPEMG00000016493) #19	Smco4 (ENSPEMG00000027427)	Cep295 (ENSPEMG00000023772) #20	Taf1d (ENSPEMG00000023691) #21	4931406C07Rik (ENSPEMG00000023421) #22	Med17 (ENSPEMG00000024047) #23	Vstm5 (ENSPEMG00000028348) #24	ENSPEMG00000002357	Hephl1 (ENSPEMG00000021631) #25	Panx1 (ENSPEMG00000010979) #26	Izumo1r (ENSPEMG00000021678) #27	Gpr83 (ENSPEMG00000022377) #28	ENSPEMG00000030623	Mre11a (ENSPEMG00000023250) #29	1700012B09Rik (ENSPEMG00000012698) #31	ENSPEMG00000025171 #32	Piwil4 (ENSPEMG00000023859) #33	Amotl1 (ENSPEMG00000021905) #34	Cwc15 (ENSPEMG00000021432) #35	Kdm4d (ENSPEMG00000001845)
Prairie vole	MODERN SPECIES	13	ENSMOCG00000004665	Or1m1 (ENSMOCG00000006062)	ENSMOCG00000006310	Zfp558 (ENSMOCG00000018648)	Naalad2 (ENSMOCG00000004722) #14	Chordc1 (ENSMOCG00000002318) #15	ENSMOCG00000016118	Fat3 (ENSMOCG00000011364) #16	Mtnr1b (ENSMOCG00000007650) #17	Slc36a4 (ENSMOCG00000018384) #18	Deup1 (ENSMOCG00000020791) #19	Smco4 (ENSMOCG00000006274)	ENSMOCG00000021789	Cep295 (ENSMOCG00000021770) #20	Taf1d (ENSMOCG00000014011) #21	4931406C07Rik (ENSMOCG00000012170) #22	Med17 (ENSMOCG00000018802) #23	Vstm5 (ENSMOCG00000012686) #24	ENSMOCG00000015072	ENSMOCG00000021818	Alkbh8 (ENSMOCG00000019349)	Cwf19l2 (ENSMOCG00000010389)	Endod1 (ENSMOCG00000016035)	Sesn3 (ENSMOCG00000013595)	Fam76b (ENSMOCG00000001551)	Cep57 (ENSMOCG00000005014)	Mtmr2 (ENSMOCG00000009930)	Maml2 (ENSMOCG00000021568)	ENSMOCG00000019222	Ccdc82 (ENSMOCG00000019062)	Jrkl (ENSMOCG00000004889)
Cricetinae	ANCESTRAL SPECIES	45							ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174 #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214.m #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152	ENSGT01030000234592.B
Chinese hamster chok1gshd	MODERN SPECIES	310					Naalad2 (ENSCGRG00001017192) #14	Chordc1 (ENSCGRG00001004673) #15	ENSCGRG00001007587	Fat3 (ENSCGRG00001016740) #16	Mtnr1b (ENSCGRG00001017947) #17	Slc36a4 (ENSCGRG00001005789) #18	Deup1 (ENSCGRG00001012085) #19	Smco4 (ENSCGRG00001013247)	ENSCGRG00001018019	Cep295 (ENSCGRG00001000538) #20	Taf1d (ENSCGRG00001004962) #21	4931406C07Rik (ENSCGRG00001008949) #22	MED17 (ENSCGRG00001017473) #23	Vstm5 (ENSCGRG00001006156) #24	Hephl1 (ENSCGRG00001014172) #25	PANX (ENSCGRG00001016361) #26	Izumo1r (ENSCGRG00001016589) #27	Gpr83 (ENSCGRG00001018677) #28	Mre11a (ENSCGRG00001006581) #29	Ankrd49 (ENSCGRG00001014107)	1700012B09Rik (ENSCGRG00001015499) #31	Fut4 (ENSCGRG00001013612) #32	Piwil4 (ENSCGRG00001017873) #33	Amotl1 (ENSCGRG00001011579) #34	Cwc15 (ENSCGRG00001013337) #35	Kdm4d (ENSCGRG00001013157)
Golden Hamster	MODERN SPECIES	778									Naalad2 (ENSMAUG00000008805) #14	Chordc1 (ENSMAUG00000012157) #15	Fat3 (ENSMAUG00000007614) #16	Slc36a4 (ENSMAUG00000001281) #18	Deup1 (ENSMAUG00000001957) #19	Smco4 (ENSMAUG00000000425)	Taf1d (ENSMAUG00000002515) #21	4931406C07Rik (ENSMAUG00000000356) #22	Med17 (ENSMAUG00000000493) #23	Vstm5 (ENSMAUG00000000333) #24	Hephl1 (ENSMAUG00000017278) #25	ENSMAUG00000015499 #26	ENSMAUG00000015032	Izumo1r (ENSMAUG00000018564) #27	Gpr83 (ENSMAUG00000017943) #28	ENSMAUG00000016290 #29	Ankrd49 (ENSMAUG00000014988)	1700012B09Rik (ENSMAUG00000014010) #31	ENSMAUG00000015824	Fut4 (ENSMAUG00000015849) #32	Piwil4 (ENSMAUG00000011382) #33	Amotl1 (ENSMAUG00000012162) #34	Cwc15 (ENSMAUG00000011686) #35
Cricetidae	ANCESTRAL SPECIES																	ENSGT00390000017214.n #22
Cricetidae_B	ANCESTRAL SPECIES																	ENSGT00390000017214.n #22
Northern American deer mouse	MODERN SPECIES		Ube3a (ENSPEMG00000021010)	Atp10a (ENSPEMG00000020854)	Gabrb3 (ENSPEMG00000023767)	Gabra5 (ENSPEMG00000019839)	Gabrg3 (ENSPEMG00000019431)	Oca2 (ENSPEMG00000020098)	Herc2 (ENSPEMG00000019120)	Nipa1 (ENSPEMG00000011557)	Nipa2 (ENSPEMG00000028381)	Cyfip1 (ENSPEMG00000020064)	Tubgcp5 (ENSPEMG00000017749)	Siglech (ENSPEMG00000016963)	Luzp2 (ENSPEMG00000019695)	ENSPEMG00000028728	ENSPEMG00000019594	ENSPEMG00000028549 #22	ENSPEMG00000013216	ENSPEMG00000011562	ENSPEMG00000022031	ENSPEMG00000022662	Uevld (ENSPEMG00000012328)	Misfa (ENSPEMG00000021845)	ENSPEMG00000021660	ENSPEMG00000023153	Tmem86a (ENSPEMG00000024287)	Ptpn5 (ENSPEMG00000022553)	ENSPEMG00000021299	ENSPEMG00000022426	Mrgprx1 (ENSPEMG00000007777)	ENSPEMG00000025968	ENSPEMG00000027080
Murinae	ANCESTRAL SPECIES	3	ENSGT00940000163044	ENSGT00440000039287	ENSGT00950000183005.b.c.a	ENSGT00940000160844.a	ENSGT00950000183005.b.c.b	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174 #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152	ENSGT01030000234592.B
Mus	ANCESTRAL SPECIES	4	ENSGT00940000163044	ENSGT00440000039287	ENSGT00950000183005.b.c.a	ENSGT00940000160844.a	ENSGT00950000183005.b.c.b	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174 #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152	ENSGT01030000234592.B
Mus_A	ANCESTRAL SPECIES	4	ENSGT00940000163044	ENSGT00440000039287	ENSGT00950000183005.b.c.a	ENSGT00940000160844.a	ENSGT00950000183005.b.c.b	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174 #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152	ENSGT01030000234592.B
Mus_B	ANCESTRAL SPECIES	3	ENSGT00940000163044	ENSGT00440000039287	ENSGT00950000183005.b.c.a	ENSGT00940000160844.a	ENSGT00950000183005.b.c.b	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174 #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152	ENSGT01030000234592.B
Mus_C	ANCESTRAL SPECIES	8	ENSGT00440000039287	ENSGT00950000183005.b.c.a	ENSGT00940000160844.a	ENSGT00950000183005.b.c.b	ENSGT00940000163858	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174 #15	ENSGT00940000153052.c.b.b.b.d.a.a	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152	ENSGT01030000234592.B
Steppe mouse	MODERN SPECIES	3318	Zfp558 (ENSMSIG00000014968)	Naalad2 (ENSMSIG00000014984) #14	Mbd3l2 (ENSMSIG00000015109)	Ubtfl1 (ENSMSIG00000015135)	Chordc1 (ENSMSIG00000015139) #15	ENSMSIG00000015167	ENSMSIG00000015180	ENSMSIG00000015183	Fat3 (ENSMSIG00000015207) #16	Mtnr1b (ENSMSIG00000015621) #17	Slc36a4 (ENSMSIG00000015623) #18	Deup1 (ENSMSIG00000015751) #19	ENSMSIG00000015880	Cep295 (ENSMSIG00000015917) #20	Taf1d (ENSMSIG00000016165) #21	4931406C07Rik (ENSMSIG00000016204) #22	Med17 (ENSMSIG00000016253) #23	Vstm5 (ENSMSIG00000016281) #24	Hephl1 (ENSMSIG00000016306) #25	Panx1 (ENSMSIG00000016343) #26	Izumo1r (ENSMSIG00000016359) #27	Gpr83 (ENSMSIG00000016567) #28	ENSMSIG00000016588	Mre11a (ENSMSIG00000016606) #29	Ankrd49 (ENSMSIG00000016701)	1700012B09Rik (ENSMSIG00000016716) #31	Fut4 (ENSMSIG00000016738) #32	Piwil4 (ENSMSIG00000016745) #33	Amotl1 (ENSMSIG00000016862) #34	Cwc15 (ENSMSIG00000017024) #35	ENSMSIG00000017048
spretus	MODERN SPECIES	18	Or1m1 (MGP_SPRETEiJ_G0032930)	MGP_SPRETEiJ_G0032929	Mbd3l1 (MGP_SPRETEiJ_G0032928)	Zfp558 (MGP_SPRETEiJ_G0032927)	Mbd3l2 (MGP_SPRETEiJ_G0032926)	Ubtfl1 (MGP_SPRETEiJ_G0032925)	Naalad2 (MGP_SPRETEiJ_G0032924) #14	Chordc1 (MGP_SPRETEiJ_G0032923) #15	MGP_SPRETEiJ_G0032922	Fat3 (MGP_SPRETEiJ_G0032921) #16	MGP_SPRETEiJ_G0032920 #17	Slc36a4 (MGP_SPRETEiJ_G0032919) #18	Deup1 (MGP_SPRETEiJ_G0032918) #19	Smco4 (MGP_SPRETEiJ_G0032917)	Cep295 (MGP_SPRETEiJ_G0032916) #20	4931406C07Rik (MGP_SPRETEiJ_G0032915) #22	Med17 (MGP_SPRETEiJ_G0032914) #23	Vstm5 (MGP_SPRETEiJ_G0032913) #24	Hephl1 (MGP_SPRETEiJ_G0032912) #25	Panx1 (MGP_SPRETEiJ_G0032911) #26	Izumo1r (MGP_SPRETEiJ_G0032910) #27	MGP_SPRETEiJ_G0032909 #28	Mre11a (MGP_SPRETEiJ_G0032908) #29	Ankrd49 (MGP_SPRETEiJ_G0032907)	1700012B09Rik (MGP_SPRETEiJ_G0032906) #31	Fut4 (MGP_SPRETEiJ_G0032905) #32	Piwil4 (MGP_SPRETEiJ_G0032904) #33	Amotl1 (MGP_SPRETEiJ_G0032903) #34	Cwc15 (MGP_SPRETEiJ_G0032902) #35	Kdm4d (MGP_SPRETEiJ_G0032901)	Endod1 (MGP_SPRETEiJ_G0032900)
Mouse	MODERN SPECIES	18	Or1m1 (ENSMUSG00000054141)	Muc16 (ENSMUSG00000109564)	Mbd3l1 (ENSMUSG00000038691)	Zfp558 (ENSMUSG00000074500)	Mbd3l2 (ENSMUSG00000047508)	Ubtfl1 (ENSMUSG00000074502)	Naalad2 (ENSMUSG00000043943) #14	Chordc1 (ENSMUSG00000001774) #15	Fat3 (ENSMUSG00000074505) #16	Mtnr1b (ENSMUSG00000050901) #17	Slc36a4 (ENSMUSG00000043885) #18	Deup1 (ENSMUSG00000039977) #19	Smco4 (ENSMUSG00000058173)	Cep295 (ENSMUSG00000046111) #20	Taf1d (ENSMUSG00000031939) #21	4931406C07Rik (ENSMUSG00000031938) #22	Med17 (ENSMUSG00000031935) #23	Vstm5 (ENSMUSG00000031937) #24	Hephl1 (ENSMUSG00000031936) #25	Panx1 (ENSMUSG00000031934) #26	Izumo1r (ENSMUSG00000031933) #27	Gpr83 (ENSMUSG00000031932) #28	Mre11a (ENSMUSG00000031928) #29	Ankrd49 (ENSMUSG00000031931)	1700012B09Rik (ENSMUSG00000031927) #31	Fut4 (ENSMUSG00000049307) #32	Piwil4 (ENSMUSG00000036912) #33	Amotl1 (ENSMUSG00000013076) #34	Cwc15 (ENSMUSG00000004096) #35	Kdm4d (ENSMUSG00000053914)	Endod1 (ENSMUSG00000037419)
Ryukyu mouse	MODERN SPECIES	18	Or1m1 (MGP_CAROLIEiJ_G0031810)	MGP_CAROLIEiJ_G0031809	Mbd3l1 (MGP_CAROLIEiJ_G0031808)	Zfp558 (MGP_CAROLIEiJ_G0031807)	Mbd3l2 (MGP_CAROLIEiJ_G0031806)	Ubtfl1 (MGP_CAROLIEiJ_G0031805)	Naalad2 (MGP_CAROLIEiJ_G0031804) #14	Chordc1 (MGP_CAROLIEiJ_G0031803) #15	Fat3 (MGP_CAROLIEiJ_G0031802) #16	Mtnr1b (MGP_CAROLIEiJ_G0031801) #17	Slc36a4 (MGP_CAROLIEiJ_G0031800) #18	Deup1 (MGP_CAROLIEiJ_G0031799) #19	Smco4 (MGP_CAROLIEiJ_G0031798)	Cep295 (MGP_CAROLIEiJ_G0031797) #20	Taf1d (MGP_CAROLIEiJ_G0031796) #21	4931406C07Rik (MGP_CAROLIEiJ_G0031795) #22	Med17 (MGP_CAROLIEiJ_G0031794) #23	Vstm5 (MGP_CAROLIEiJ_G0031793) #24	Hephl1 (MGP_CAROLIEiJ_G0031792) #25	Panx1 (MGP_CAROLIEiJ_G0031791) #26	Izumo1r (MGP_CAROLIEiJ_G0031790) #27	Gpr83 (MGP_CAROLIEiJ_G0031789) #28	Mre11a (MGP_CAROLIEiJ_G0031788) #29	Ankrd49 (MGP_CAROLIEiJ_G0031787)	1700012B09Rik (MGP_CAROLIEiJ_G0031786) #31	Fut4 (MGP_CAROLIEiJ_G0031785) #32	Piwil4 (MGP_CAROLIEiJ_G0031784) #33	Amotl1 (MGP_CAROLIEiJ_G0031783) #34	Cwc15 (MGP_CAROLIEiJ_G0031782) #35	Kdm4d (MGP_CAROLIEiJ_G0031781)	Endod1 (MGP_CAROLIEiJ_G0031780)
Shrew mouse	MODERN SPECIES	1	Or1m1 (MGP_PahariEiJ_G0014686)	MGP_PahariEiJ_G0014685	Mbd3l1 (MGP_PahariEiJ_G0014684)	Zfp558 (MGP_PahariEiJ_G0014683)	Mbd3l2 (MGP_PahariEiJ_G0014682)	Ubtfl1 (MGP_PahariEiJ_G0014681)	MGP_PahariEiJ_G0014680	Chordc1 (MGP_PahariEiJ_G0014679) #15	Fat3 (MGP_PahariEiJ_G0014678) #16	Mtnr1b (MGP_PahariEiJ_G0014677) #17	Slc36a4 (MGP_PahariEiJ_G0014676) #18	Deup1 (MGP_PahariEiJ_G0014675) #19	Smco4 (MGP_PahariEiJ_G0014674)	Cep295 (MGP_PahariEiJ_G0014673) #20	MGP_PahariEiJ_G0014672 #21	4931406C07Rik (MGP_PahariEiJ_G0014671) #22	Med17 (MGP_PahariEiJ_G0014670) #23	Vstm5 (MGP_PahariEiJ_G0014669) #24	MGP_PahariEiJ_G0014668 #25	Panx1 (MGP_PahariEiJ_G0014667) #26	Izumo1r (MGP_PahariEiJ_G0014666) #27	Gpr83 (MGP_PahariEiJ_G0014665) #28	Mre11a (MGP_PahariEiJ_G0014664) #29	Ankrd49 (MGP_PahariEiJ_G0014663)	1700012B09Rik (MGP_PahariEiJ_G0014662) #31	Fut4 (MGP_PahariEiJ_G0014661) #32	Piwil4 (MGP_PahariEiJ_G0014660) #33	Amotl1 (MGP_PahariEiJ_G0014659) #34	Cwc15 (MGP_PahariEiJ_G0014658) #35	Kdm4d (MGP_PahariEiJ_G0014657)	Endod1 (MGP_PahariEiJ_G0014656)
Rat	MODERN SPECIES	18	ENSRNOG00000070900	Naalad2 (ENSRNOG00000005955) #14	Chordc1 (ENSRNOG00000026643) #15	LOC120097744 (ENSRNOG00000064258)	LOC690235 (ENSRNOG00000024200)	ENSRNOG00000031660	Nek2l1 (ENSRNOG00000012119)	LOC689840 (ENSRNOG00000031522)	Fat3 (ENSRNOG00000011585) #16	Mtnr1b (ENSRNOG00000008972) #17	Slc36a4 (ENSRNOG00000011455) #18	Deup1 (ENSRNOG00000061247) #19	Smco4 (ENSRNOG00000011162)	Cep295 (ENSRNOG00000010999) #20	Taf1d (ENSRNOG00000010921) #21	C8h11orf54 (ENSRNOG00000010887) #22	Med17 (ENSRNOG00000010496) #23	Vstm5 (ENSRNOG00000010480) #24	ENSRNOG00000062992	Hephl1 (ENSRNOG00000056092) #25	Panx1 (ENSRNOG00000010060) #26	Izumo1r (ENSRNOG00000019894) #27	Gpr83 (ENSRNOG00000030318) #28	Mre11 (ENSRNOG00000009506) #29	Ankrd49 (ENSRNOG00000009233)	C8h11orf97 (ENSRNOG00000009203) #31	Fut4 (ENSRNOG00000009157) #32	Piwil4 (ENSRNOG00000009043) #33	Amotl1 (ENSRNOG00000008990) #34	Cwc15 (ENSRNOG00000008490) #35	LOC108348070 (ENSRNOG00000045905)
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a ##14	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174.f #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00940000169594	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152
Hystricomorpha	ANCESTRAL SPECIES	5	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a ##14	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174.f #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00940000169594	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084.u #35	ENSGT00940000162152
Hystricomorpha_a	ANCESTRAL SPECIES	10	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a ##14	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174.f #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00940000169594	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084.u #35	ENSGT00940000162152
Guinea pig	MODERN SPECIES	40	CTSC (ENSCPOG00000014848)	GRM5 (ENSCPOG00000009056)	ENSCPOG00000039497	TYR (ENSCPOG00000010608)	NOX4 (ENSCPOG00000040335)	FOLH1 (ENSCPOG00000003797) ##14	NAALAD2 (ENSCPOG00000038440) #14	CHORDC1 (ENSCPOG00000022614) #15	ENSCPOG00000010626 #16	MTNR1B (ENSCPOG00000010637) #17	SLC36A4 (ENSCPOG00000036098) #18	DEUP1 (ENSCPOG00000011016) #19	SMCO4 (ENSCPOG00000032286)	CEP295 (ENSCPOG00000032006) #20	TAF1D (ENSCPOG00000002426) #21	C11orf54 (ENSCPOG00000014146) #22	MED17 (ENSCPOG00000014149) #23	VSTM5 (ENSCPOG00000024881) #24	HEPHL1 (ENSCPOG00000004098) #25	PANX1 (ENSCPOG00000039148) #26	IZUMO1R (ENSCPOG00000011657) #27	GPR83 (ENSCPOG00000039200) #28	MRE11 (ENSCPOG00000014563) #29	ANKRD49 (ENSCPOG00000030391)	C11orf97 (ENSCPOG00000031459) #31	FUT4 (ENSCPOG00000000069) #32	PIWIL4 (ENSCPOG00000000070) #33	AMOTL1 (ENSCPOG00000006241) #34	CWC15 (ENSCPOG00000006249) #35	KDM4D (ENSCPOG00000006256)
Hystricomorpha_b	ANCESTRAL SPECIES	5	ENSGT00940000157301.b	ENSGT00940000155787	ENSGT01030000234595.A.a	ENSGT00940000155336	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a ##14	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174.f #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00940000169594	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919
Long-tailed chinchilla	MODERN SPECIES	121	ENSCLAG00000014570	TYR (ENSCLAG00000016284)	ENSCLAG00000013267	NOX4 (ENSCLAG00000014011)	FOLH1 (ENSCLAG00000014594) ##14	NAALAD2 (ENSCLAG00000012474) #14	ENSCLAG00000014963 #15	FAT3 (ENSCLAG00000013669) #16	ENSCLAG00000012677	MTNR1B (ENSCLAG00000012055) #17	SLC36A4 (ENSCLAG00000015872) #18	DEUP1 (ENSCLAG00000013832) #19	SMCO4 (ENSCLAG00000011932)	CEP295 (ENSCLAG00000014683) #20	TAF1D (ENSCLAG00000014698) #21	C11orf54 (ENSCLAG00000017272) #22	MED17 (ENSCLAG00000017202) #23	VSTM5 (ENSCLAG00000016423) #24	HEPHL1 (ENSCLAG00000015721) #25	PANX1 (ENSCLAG00000014612) #26	IZUMO1R (ENSCLAG00000015110) #27	ENSCLAG00000013252	GPR83 (ENSCLAG00000013629) #28	ENSCLAG00000013392 #29	ANKRD49 (ENSCLAG00000015054)
Degu	MODERN SPECIES	250								ENSODEG00000018835	ENSODEG00000002534	FAT3 (ENSODEG00000002606) #16	MTNR1B (ENSODEG00000002125) #17	SLC36A4 (ENSODEG00000002145) #18	DEUP1 (ENSODEG00000002198) #19	SMCO4 (ENSODEG00000018804)	TAF1D (ENSODEG00000002225) #21	C11orf54 (ENSODEG00000002265) #22	MED17 (ENSODEG00000002353) #23	VSTM5 (ENSODEG00000002406) #24	ENSODEG00000002422	HEPHL1 (ENSODEG00000002492) #25	ENSODEG00000000644 #26	ENSODEG00000000623	IZUMO1R (ENSODEG00000000695) #27	GPR83 (ENSODEG00000000724) #28	ENSODEG00000001221	ENSODEG00000001233
Naked mole-rat female	MODERN SPECIES	24	ENSHGLG00000000730	ENSHGLG00000047307	FOLH1 (ENSHGLG00000005991) ##14	ENSHGLG00000020460	UBTFL1 (ENSHGLG00000034220)	ENSHGLG00000003627	ENSHGLG00000002890 #14	ENSHGLG00000007922 #15	ENSHGLG00000006607	ENSHGLG00000050821	FAT3 (ENSHGLG00000010388) #16	ENSHGLG00000044735 #17	SLC36A4 (ENSHGLG00000044885) #18	ENSHGLG00000020910	ENSHGLG00000014481 #20	C11orf54 (ENSHGLG00000012597) #22	TAF1D (ENSHGLG00000008795) #21	MED17 (ENSHGLG00000006191) #23	VSTM5 (ENSHGLG00000007424) #24	ENSHGLG00000048701	ENSHGLG00000049421	HEPHL1 (ENSHGLG00000005416) #25	PANX1 (ENSHGLG00000007682) #26	ENSHGLG00000050118	IZUMO1R (ENSHGLG00000008985) #27	ENSHGLG00000019637	GPR83 (ENSHGLG00000018711) #28	MRE11A (ENSHGLG00000015754) #29	ANKRD49 (ENSHGLG00000014039)	ENSHGLG00000014136 #31	FUT4 (ENSHGLG00000005608) #32
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00940000159621	ENSGT01030000234598.b.a.b.k.a ##14	ENSGT00940000163440 #10	ENSGT00940000160005.A.n	ENSGT00940000162409	ENSGT00940000163419	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174.f #15	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152.g.a	ENSGT00940000162152.g.b
Marmotini	ANCESTRAL SPECIES	20					ENSGT00940000160005.A.n	ENSGT01030000234598.b.a.b.k.b #14	ENSGT00940000154174.f #15	ENSGT00940000178162	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152.g.a	ENSGT00940000162152.g.b
Marmotini_b	ANCESTRAL SPECIES	155								ENSGT00940000178162	ENSGT00940000154981 #16	ENSGT00940000162341 #17	ENSGT00940000160117 #18	ENSGT00940000153190.B.a #19	ENSGT00390000015987	ENSGT00940000153123.A.e #20	ENSGT00390000009061 #21	ENSGT00390000017214 #22	ENSGT00390000011810 #23	ENSGT01100000263551.b.a.b #24	ENSGT00940000157994 #25	ENSGT00940000153972.A #26	ENSGT00950000183144.A.j #27	ENSGT00940000154336.d #28	ENSGT00390000017288 #29	ENSGT00390000003919	ENSGT00520000058823 #31	ENSGT00940000162506 #32	ENSGT00950000183200.A.a.a #33	ENSGT00940000160158 #34	ENSGT00390000012084 #35	ENSGT00940000162152.g.a	ENSGT00940000162152.g.b
Arctic ground squirrel	MODERN SPECIES	166									ENSUPAG00010000873	FAT3 (ENSUPAG00010000879) #16	MTNR1B (ENSUPAG00010000937) #17	SLC36A4 (ENSUPAG00010000949) #18	DEUP1 (ENSUPAG00010000984) #19	CEP295 (ENSUPAG00010001137) #20	TAF1D (ENSUPAG00010001478) #21	C11orf54 (ENSUPAG00010001486) #22	MED17 (ENSUPAG00010001622) #23	VSTM5 (ENSUPAG00010001672) #24	HEPHL1 (ENSUPAG00010001691) #25	PANX1 (ENSUPAG00010001730) #26	ENSUPAG00010001744	IZUMO1R (ENSUPAG00010001756) #27	GPR83 (ENSUPAG00010001763) #28	MRE11 (ENSUPAG00010001790) #29	ANKRD49 (ENSUPAG00010001896)	C11orf97 (ENSUPAG00010001935) #31	FUT4 (ENSUPAG00010001953) #32	PIWIL4 (ENSUPAG00010001982) #33	AMOTL1 (ENSUPAG00010002044) #34	CWC15 (ENSUPAG00010002076) #35	KDM4D (ENSUPAG00010002086)
Squirrel	MODERN SPECIES	274									FAT3 (ENSSTOG00000008783) #16	MTNR1B (ENSSTOG00000008849) #17	SLC36A4 (ENSSTOG00000008854) #18	DEUP1 (ENSSTOG00000011722) #19	SMCO4 (ENSSTOG00000008008)	CEP295 (ENSSTOG00000008015) #20	TAF1D (ENSSTOG00000030516) #21	C11orf54 (ENSSTOG00000008061) #22	MED17 (ENSSTOG00000008098) #23	VSTM5 (ENSSTOG00000025751) #24	ENSSTOG00000033997	HEPHL1 (ENSSTOG00000026323) #25	PANX1 (ENSSTOG00000006851) #26	ENSSTOG00000032468	IZUMO1R (ENSSTOG00000032389) #27	GPR83 (ENSSTOG00000006859) #28	MRE11 (ENSSTOG00000006869) #29	ANKRD49 (ENSSTOG00000028263)	C11orf97 (ENSSTOG00000032509) #31	FUT4 (ENSSTOG00000006910) #32	ENSSTOG00000006932 #33	AMOTL1 (ENSSTOG00000002462) #34	CWC15 (ENSSTOG00000002485) #35
Alpin marmot	MODERN SPECIES	25				ENSMMMG00000004728	NAALAD2 (ENSMMMG00000004701) #14	CHORDC1 (ENSMMMG00000004692) #15	ENSMMMG00000004674	ENSMMMG00000004671	FAT3 (ENSMMMG00000004600) #16	MTNR1B (ENSMMMG00000004580) #17	SLC36A4 (ENSMMMG00000004555) #18	DEUP1 (ENSMMMG00000004469) #19	SMCO4 (ENSMMMG00000004447)	CEP295 (ENSMMMG00000004214) #20	TAF1D (ENSMMMG00000004115) #21	C11orf54 (ENSMMMG00000004067) #22	MED17 (ENSMMMG00000004045) #23	VSTM5 (ENSMMMG00000004034) #24	HEPHL1 (ENSMMMG00000003995) #25	PANX1 (ENSMMMG00000003980) #26	IZUMO1R (ENSMMMG00000003960) #27	GPR83 (ENSMMMG00000003939) #28	MRE11 (ENSMMMG00000003822) #29	ANKRD49 (ENSMMMG00000003801)	C11orf97 (ENSMMMG00000003791) #31	FUT4 (ENSMMMG00000003775) #32	PIWIL4 (ENSMMMG00000003741) #33	AMOTL1 (ENSMMMG00000003717) #34	CWC15 (ENSMMMG00000003695) #35	ENSMMMG00000003692	ENSMMMG00000003680
Eurasian red squirrel	MODERN SPECIES	2	ENSSVLG00005022908	ENSSVLG00005022933	ENSSVLG00005022975	ENSSVLG00005023136	ENSSVLG00005023329	NAALAD2 (ENSSVLG00005023397) #14	ENSSVLG00005023505 #15	FAT3 (ENSSVLG00005023682) #16	MTNR1B (ENSSVLG00005023956) #17	SLC36A4 (ENSSVLG00005023972) #18	ENSSVLG00005024017	DEUP1 (ENSSVLG00005024034) #19	SMCO4 (ENSSVLG00005024149)	CEP295 (ENSSVLG00005024179) #20	TAF1D (ENSSVLG00005008868) #21	C11orf54 (ENSSVLG00005008945) #22	MED17 (ENSSVLG00005009035) #23	VSTM5 (ENSSVLG00005009102) #24	HEPHL1 (ENSSVLG00005009168) #25	PANX1 (ENSSVLG00005009275) #26	IZUMO1R (ENSSVLG00005009300) #27	GPR83 (ENSSVLG00005009337) #28	MRE11 (ENSSVLG00005009395) #29	ENSSVLG00005009454	ANKRD49 (ENSSVLG00005009488)	C11orf97 (ENSSVLG00005009503) #31	FUT4 (ENSSVLG00005009540) #32	PIWIL4 (ENSSVLG00005009583) #33	AMOTL1 (ENSSVLG00005009738) #34	CWC15 (ENSSVLG00005009802) #35	KDM4D (ENSSVLG00005009838)
Tree shrew	MODERN SPECIES	7750																ENSTBEG00000007819 #22