Mus_A	ANCESTRAL SPECIES		ENSGT00940000155275.d	ENSGT00940000161868	ENSGT00940000161976	ENSGT00950000182943.kb.b.a.b.b.a	ENSGT00950000182943.kb.b.a.b.b.b	ENSGT00950000182943.kb.b.a.b.a	ENSGT00950000182943.kb.b.b.a.b	ENSGT00950000182943.kb.b.b.a.a.a	ENSGT00950000182943.kb.b.b.a.a.b	ENSGT00940000159561	ENSGT00390000002862	ENSGT00940000155953	ENSGT00950000182883.b.a.a	ENSGT00940000153661.a.b.a.b.a.b.a.b #20	ENSGT00550000074836 #21	ENSGT00940000157002 #22	ENSGT00940000156350 #23	ENSGT00940000154811.A #24	ENSGT00940000153498.B.a #25	ENSGT00940000156105 #27	ENSGT00940000157951 #29	ENSGT00940000155939	ENSGT00940000155918	ENSGT00940000161144	ENSGT00940000153866.A	ENSGT00940000162225	ENSGT00940000155406	ENSGT00940000156098	ENSGT00510000049635	ENSGT00390000003836	ENSGT00940000161000
Mus_B	ANCESTRAL SPECIES	1	ENSGT00940000155275.d	ENSGT00940000161868	ENSGT00940000161976	ENSGT00950000182943.kb.b.a.b.b.a	ENSGT00950000182943.kb.b.a.b.b.b	ENSGT00950000182943.kb.b.a.b.a	ENSGT00950000182943.kb.b.b.a.b	ENSGT00950000182943.kb.b.b.a.a.a	ENSGT00950000182943.kb.b.b.a.a.b	ENSGT00940000159561	ENSGT00390000002862	ENSGT00940000155953	ENSGT00950000182883.b.a.a	ENSGT00940000153661.a.b.a.b.a.b.a.b #20	ENSGT00550000074836 #21	ENSGT00940000157002 #22	ENSGT00940000156350 #23	ENSGT00940000154811.A #24	ENSGT00940000153498.B.a #25	ENSGT00940000156105 #27	ENSGT00940000157951 #29	ENSGT00940000155939	ENSGT00940000155918	ENSGT00940000161144	ENSGT00940000153866.A	ENSGT00940000162225	ENSGT00940000155406	ENSGT00940000156098	ENSGT00510000049635	ENSGT00390000003836	ENSGT00940000161000
Mus_C	ANCESTRAL SPECIES	30														ENSGT00940000153661.a.b.a.b.a.b.a.b #20	ENSGT00550000074836 #21	ENSGT00940000157002 #22	ENSGT00940000156350 #23	ENSGT00940000154811.A #24	ENSGT00940000153498.B.a #25	ENSGT00940000156105 #27	ENSGT00940000157951 #29	ENSGT00940000155939	ENSGT00940000155918	ENSGT00940000161144	ENSGT00940000153866.A	ENSGT00940000162225	ENSGT00940000155406	ENSGT00940000156098	ENSGT00510000049635	ENSGT00390000003836	ENSGT00940000161000
Steppe mouse	MODERN SPECIES	2490													ENSMSIG00000028260 #19	ENSMSIG00000028257 #20	Yme1l1 (ENSMSIG00000028235) #21	Mastl (ENSMSIG00000028202) #22	Acbd5 (ENSMSIG00000028104) #23	Abi1 (ENSMSIG00000028051) #24	Pdss1 (ENSMSIG00000028042) #25	ENSMSIG00000028037 #26	Apbb1ip (ENSMSIG00000028030) #27	ENSMSIG00000028028 #28	Gad2 (ENSMSIG00000028019) #29
spretus	MODERN SPECIES	11	Ehmt1 (MGP_SPRETEiJ_G0024157)	Cacna1b (MGP_SPRETEiJ_G0024156)	Pax8 (MGP_SPRETEiJ_G0024155)	Psd4 (MGP_SPRETEiJ_G0024154)	Il1rn (MGP_SPRETEiJ_G0024153)	Il1f10 (MGP_SPRETEiJ_G0024152)	Il36rn (MGP_SPRETEiJ_G0024151)	Il36a (MGP_SPRETEiJ_G0024150)	Il36g (MGP_SPRETEiJ_G0024149)	Tbpl2 (MGP_SPRETEiJ_G0024148)	Hnmt (MGP_SPRETEiJ_G0024147)	MGP_SPRETEiJ_G0024146	Nxph2 (MGP_SPRETEiJ_G0024145)	MGP_SPRETEiJ_G0024144 #20	MGP_SPRETEiJ_G0024143 #21	Mastl (MGP_SPRETEiJ_G0024142) #22	Acbd5 (MGP_SPRETEiJ_G0024141) #23	Abi1 (MGP_SPRETEiJ_G0024140) #24	Pdss1 (MGP_SPRETEiJ_G0024139) #25	Apbb1ip (MGP_SPRETEiJ_G0024138) #27	Gad2 (MGP_SPRETEiJ_G0024137) #29	MGP_SPRETEiJ_G0024136	Gpr158 (MGP_SPRETEiJ_G0024135)	Thnsl1 (MGP_SPRETEiJ_G0024134)	Enkur (MGP_SPRETEiJ_G0024133)	Arhgap21 (MGP_SPRETEiJ_G0024132)	Etl4 (MGP_SPRETEiJ_G0024131)	Otud1 (MGP_SPRETEiJ_G0024130)	4921504E06Rik (MGP_SPRETEiJ_G0024129)	Ptf1a (MGP_SPRETEiJ_G0024128)	MGP_SPRETEiJ_G0024127
Mouse	MODERN SPECIES	11	Cacna1b (ENSMUSG00000004113)	Pax8 (ENSMUSG00000026976)	Psd4 (ENSMUSG00000026979)	Il1rn (ENSMUSG00000026981)	Il1f10 (ENSMUSG00000046845)	Il36rn (ENSMUSG00000026983)	Il36a (ENSMUSG00000026984)	Il36g (ENSMUSG00000044103)	Il36b (ENSMUSG00000026985)	Tbpl2 (ENSMUSG00000061809)	Hnmt (ENSMUSG00000026986)	Spopl (ENSMUSG00000026771)	Nxph2 (ENSMUSG00000069132)	Potegl (ENSMUSG00000026774) #20	Yme1l1 (ENSMUSG00000026775) #21	Mastl (ENSMUSG00000026779) #22	Acbd5 (ENSMUSG00000026781) #23	Abi1 (ENSMUSG00000058835) #24	Pdss1 (ENSMUSG00000026784) #25	Apbb1ip (ENSMUSG00000026786) #27	Gad2 (ENSMUSG00000026787) #29	Myo3a (ENSMUSG00000025716)	Gpr158 (ENSMUSG00000045967)	Thnsl1 (ENSMUSG00000048550)	Enkur (ENSMUSG00000026679)	Arhgap21 (ENSMUSG00000036591)	Etl4 (ENSMUSG00000036617)	Otud1 (ENSMUSG00000043415)	4921504E06Rik (ENSMUSG00000026734)	Ptf1a (ENSMUSG00000026735)	Msrb2 (ENSMUSG00000023094)
Ryukyu mouse	MODERN SPECIES	11	Zmynd19 (MGP_CAROLIEiJ_G0023242)	Arrdc1 (MGP_CAROLIEiJ_G0023241)	Ehmt1 (MGP_CAROLIEiJ_G0023240)	Cacna1b (MGP_CAROLIEiJ_G0023239)	Pax8 (MGP_CAROLIEiJ_G0023238)	Psd4 (MGP_CAROLIEiJ_G0023237)	Il1rn (MGP_CAROLIEiJ_G0023236)	Il1f10 (MGP_CAROLIEiJ_G0023235)	Il36rn (MGP_CAROLIEiJ_G0023234)	Il36a (MGP_CAROLIEiJ_G0023233)	Il36g (MGP_CAROLIEiJ_G0023232)	Tbpl2 (MGP_CAROLIEiJ_G0023231)	Hnmt (MGP_CAROLIEiJ_G0023230)	Spopl (MGP_CAROLIEiJ_G0023229)	Nxph2 (MGP_CAROLIEiJ_G0023228)	MGP_CAROLIEiJ_G0023227 #22	Acbd5 (MGP_CAROLIEiJ_G0023226) #23	Abi1 (MGP_CAROLIEiJ_G0023225) #24	Pdss1 (MGP_CAROLIEiJ_G0023224) #25	Apbb1ip (MGP_CAROLIEiJ_G0023223) #27	Gad2 (MGP_CAROLIEiJ_G0023222) #29	Myo3a (MGP_CAROLIEiJ_G0023221)	Gpr158 (MGP_CAROLIEiJ_G0023220)	Thnsl1 (MGP_CAROLIEiJ_G0023219)	Enkur (MGP_CAROLIEiJ_G0023218)	Arhgap21 (MGP_CAROLIEiJ_G0023217)	Etl4 (MGP_CAROLIEiJ_G0023216)	Otud1 (MGP_CAROLIEiJ_G0023215)	4921504E06Rik (MGP_CAROLIEiJ_G0023214)	Ptf1a (MGP_CAROLIEiJ_G0023213)	Msrb2 (MGP_CAROLIEiJ_G0023212)