Mus	ANCESTRAL SPECIES	11	ENSGT00730000111596 #8	ENSGT01100000263574.a.f.a.f ##9	ENSGT01100000263574.a.f.a.e.a ##9	ENSGT01100000263574.a.f.a.e.b #9	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #27	ENSGT00940000160716 #28	ENSGT00950000183205.b.a.b.a.b #29	ENSGT00390000016138 #30	ENSGT00940000158969 #32	ENSGT00860000136064 #33	ENSGT00950000183093.A.a #34	ENSGT00810000125439.B #35	ENSGT00390000013052 #36	ENSGT00530000063868.b #37	ENSGT00940000158792	ENSGT00530000063554.b
Mus_A	DUPLICATION
Mus_A	ANCESTRAL SPECIES	13	ENSGT00730000111596 #8	ENSGT01100000263574.a.f.a.e.b.a.a #9	ENSGT01100000263574.a.f.a.f ##9	ENSGT01100000263574.a.f.a.e.b.a.b #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749.c #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #27	ENSGT00940000160716 #28	ENSGT00950000183205.b.a.b.a.b #29	ENSGT00390000016138 #30	ENSGT00940000158969 #32	ENSGT00860000136064 #33	ENSGT00950000183093.A.a #34	ENSGT00810000125439.B #35	ENSGT00390000013052 #36	ENSGT00530000063868.b #37	ENSGT00940000158792	ENSGT00530000063554.b
Mus_B	ANCESTRAL SPECIES	12	ENSGT00940000162121 #7	ENSGT00730000111596 #8	ENSGT01100000263574.a.f.a.f ##9	ENSGT01100000263574.a.f.a.e.b.a.b #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749.c #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #27	ENSGT00940000160716 #28	ENSGT00950000183205.b.a.b.a.b #29	ENSGT00390000016138 #30	ENSGT00940000158969 #32	ENSGT00860000136064 #33	ENSGT00950000183093.A.a #34	ENSGT00810000125439.B #35	ENSGT00390000013052 #36	ENSGT00530000063868.b #37	ENSGT00940000158792	ENSGT00530000063554.b
Mus_C	ANCESTRAL SPECIES	17	ENSGT00940000162121 #7	ENSGT00730000111596 #8	ENSGT01100000263574.a.f.a.f ##9	ENSGT01100000263574.a.f.a.e.b.a.b #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749.c #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #27	ENSGT00940000160716 #28	ENSGT00950000183205.b.a.b.a.b #29	ENSGT00390000016138 #30	ENSGT00940000158969 #32	ENSGT00860000136064 #33	ENSGT00950000183093.A.a #34	ENSGT00810000125439.B #35	ENSGT00390000013052 #36	ENSGT00530000063868.b #37	ENSGT00940000158792	ENSGT00530000063554.b
spretus	MODERN SPECIES	6	Zfp641 (MGP_SPRETEiJ_G0021123) #7	H1f7 (MGP_SPRETEiJ_G0021122) #8	MGP_SPRETEiJ_G0021121 #9	MGP_SPRETEiJ_G0021120 #10	Ccdc184 (MGP_SPRETEiJ_G0021119) #11	Asb8 (MGP_SPRETEiJ_G0021118) #12	Pfkm (MGP_SPRETEiJ_G0021117) #13	Senp1 (MGP_SPRETEiJ_G0021116) #14	Col2a1 (MGP_SPRETEiJ_G0021115) #15	Tmem106c (MGP_SPRETEiJ_G0021114) #16	Vdr (MGP_SPRETEiJ_G0021113) #17	Hdac7 (MGP_SPRETEiJ_G0021112) #18	Slc48a1 (MGP_SPRETEiJ_G0021111) #19	Rapgef3 (MGP_SPRETEiJ_G0021110) #20	MGP_SPRETEiJ_G0021109 #21	Rpap3 (MGP_SPRETEiJ_G0021108) #22	Pced1b (MGP_SPRETEiJ_G0021107) #23	Amigo2 (MGP_SPRETEiJ_G0021106) #24	Slc38a4 (MGP_SPRETEiJ_G0021105) #25	MGP_SPRETEiJ_G0021104 #26	Slc38a2 (MGP_SPRETEiJ_G0021103) #27	Slc38a1 (MGP_SPRETEiJ_G0021102) #28	Scaf11 (MGP_SPRETEiJ_G0021101) #29	Arid2 (MGP_SPRETEiJ_G0021100) #30	MGP_SPRETEiJ_G0021099 #31	Ano6 (MGP_SPRETEiJ_G0021098) #32	MGP_SPRETEiJ_G0021097 #33	Dbx2 (MGP_SPRETEiJ_G0021096) #34	Nell2 (MGP_SPRETEiJ_G0021095) #35	Tmem117 (MGP_SPRETEiJ_G0021094) #36	Twf1 (MGP_SPRETEiJ_G0021093) #37
Steppe mouse	MODERN SPECIES	3265											Vdr (ENSMSIG00000028053) #17	Hdac7 (ENSMSIG00000027292) #18	Slc48a1 (ENSMSIG00000027281) #19	Rapgef3 (ENSMSIG00000027208) #20	Endou (ENSMSIG00000027161) #21	Rpap3 (ENSMSIG00000027120) #22	Pced1b (ENSMSIG00000027114) #23	Amigo2 (ENSMSIG00000027100) #24	Slc38a4 (ENSMSIG00000027038) #25	Slc38a2 (ENSMSIG00000027016) #27	Slc38a1 (ENSMSIG00000026985) #28	Scaf11 (ENSMSIG00000026922) #29	Arid2 (ENSMSIG00000026910) #30	ENSMSIG00000026901	Ano6 (ENSMSIG00000026819) #32	Dbx2 (ENSMSIG00000026810) #34	ENSMSIG00000026795	Nell2 (ENSMSIG00000026630) #35	Tmem117 (ENSMSIG00000026602) #36
Mouse	MODERN SPECIES	6	Or10ad1b (ENSMUSG00000059460) ##9	Or10ad1 (ENSMUSG00000090129) ##9	Gm44579 (ENSMUSG00000108748)	Or10ad1c (ENSMUSG00000075427) ##9	Ccdc184 (ENSMUSG00000029875) #11	Asb8 (ENSMUSG00000048175) #12	Pfkm (ENSMUSG00000033065) #13	Senp1 (ENSMUSG00000033075) #14	Col2a1 (ENSMUSG00000022483) #15	Tmem106c (ENSMUSG00000052369) #16	Vdr (ENSMUSG00000022479) #17	Hdac7 (ENSMUSG00000022475) #18	Slc48a1 (ENSMUSG00000081534) #19	Rapgef3 (ENSMUSG00000022469) #20	Endou (ENSMUSG00000022468) #21	Rpap3 (ENSMUSG00000022466) #22	Pced1b (ENSMUSG00000044250) #23	Amigo2 (ENSMUSG00000048218) #24	Slc38a4 (ENSMUSG00000022464) #25	Slc38a2 (ENSMUSG00000022462) #27	Slc38a1 (ENSMUSG00000023169) #28	Scaf11 (ENSMUSG00000033228) #29	Arid2 (ENSMUSG00000033237) #30	Ano6 (ENSMUSG00000064210) #32	Dbx2 (ENSMUSG00000045608) #34	Nell2 (ENSMUSG00000022454) #35	Tmem117 (ENSMUSG00000063296) #36	Twf1 (ENSMUSG00000022451) #37	Irak4 (ENSMUSG00000059883)	Pus7l (ENSMUSG00000033356)	Adamts20 (ENSMUSG00000022449)
Ryukyu mouse	MODERN SPECIES	6	Zfp641 (MGP_CAROLIEiJ_G0020227) #7	H1f7 (MGP_CAROLIEiJ_G0020226) #8	MGP_CAROLIEiJ_G0020225 #9	MGP_CAROLIEiJ_G0020224 ##9	Ccdc184 (MGP_CAROLIEiJ_G0020223) #11	Asb8 (MGP_CAROLIEiJ_G0020222) #12	Pfkm (MGP_CAROLIEiJ_G0020221) #13	Senp1 (MGP_CAROLIEiJ_G0020220) #14	Col2a1 (MGP_CAROLIEiJ_G0020219) #15	Tmem106c (MGP_CAROLIEiJ_G0020218) #16	Vdr (MGP_CAROLIEiJ_G0020217) #17	Hdac7 (MGP_CAROLIEiJ_G0020216) #18	Slc48a1 (MGP_CAROLIEiJ_G0020215) #19	Rapgef3 (MGP_CAROLIEiJ_G0020214) #20	MGP_CAROLIEiJ_G0020213 #21	Rpap3 (MGP_CAROLIEiJ_G0020212) #22	Pced1b (MGP_CAROLIEiJ_G0020211) #23	Amigo2 (MGP_CAROLIEiJ_G0020210) #24	Slc38a4 (MGP_CAROLIEiJ_G0020209) #25	MGP_CAROLIEiJ_G0020208 #26	Slc38a2 (MGP_CAROLIEiJ_G0020207) #27	Slc38a1 (MGP_CAROLIEiJ_G0020206) #28	Scaf11 (MGP_CAROLIEiJ_G0020205) #29	Arid2 (MGP_CAROLIEiJ_G0020204) #30	MGP_CAROLIEiJ_G0020203	Ano6 (MGP_CAROLIEiJ_G0020202) #32	MGP_CAROLIEiJ_G0020201 #33	MGP_CAROLIEiJ_G0020200 #34	Nell2 (MGP_CAROLIEiJ_G0020199) #35	Tmem117 (MGP_CAROLIEiJ_G0020198) #36	Twf1 (MGP_CAROLIEiJ_G0020197) #37
Mus_A	ANCESTRAL SPECIES																	ENSGT00940000156749.d ##22
Mus_B	ANCESTRAL SPECIES																	ENSGT00940000156749.d ##22
Mus_C	ANCESTRAL SPECIES																	ENSGT00940000156749.d ##22
Steppe mouse	MODERN SPECIES	3006														ENSMSIG00000030680	ENSMSIG00000030677	ENSMSIG00000030674 ##22
Shrew mouse	MODERN SPECIES	8	Zfp641 (MGP_PahariEiJ_G0020230) #7	H1f7 (MGP_PahariEiJ_G0020229) #8	MGP_PahariEiJ_G0020228 ##9	MGP_PahariEiJ_G0020227 #9	Ccdc184 (MGP_PahariEiJ_G0020226) #11	Asb8 (MGP_PahariEiJ_G0020225) #12	Pfkm (MGP_PahariEiJ_G0020224) #13	Senp1 (MGP_PahariEiJ_G0020223) #14	Col2a1 (MGP_PahariEiJ_G0020222) #15	Tmem106c (MGP_PahariEiJ_G0020221) #16	Vdr (MGP_PahariEiJ_G0020220) #17	Hdac7 (MGP_PahariEiJ_G0020219) #18	Slc48a1 (MGP_PahariEiJ_G0020218) #19	Rapgef3 (MGP_PahariEiJ_G0020217) #20	Endou (MGP_PahariEiJ_G0020216) #21	Rpap3 (MGP_PahariEiJ_G0020215) #22	Pced1b (MGP_PahariEiJ_G0020214) #23	Amigo2 (MGP_PahariEiJ_G0020213) #24	Slc38a4 (MGP_PahariEiJ_G0020212) #25	Slc38a2 (MGP_PahariEiJ_G0020211) #27	Slc38a1 (MGP_PahariEiJ_G0020210) #28	Scaf11 (MGP_PahariEiJ_G0020209) #29	Arid2 (MGP_PahariEiJ_G0020208) #30	MGP_PahariEiJ_G0020207	Ano6 (MGP_PahariEiJ_G0020206) #32	MGP_PahariEiJ_G0020205 #33	Dbx2 (MGP_PahariEiJ_G0020204) #34	Nell2 (MGP_PahariEiJ_G0020203) #35	Tmem117 (MGP_PahariEiJ_G0020202) #36	Twf1 (MGP_PahariEiJ_G0020201) #37	Irak4 (MGP_PahariEiJ_G0020200)