Chordata	ANCESTRAL SPECIES																	ENSGT00940000156749 #22
Vertebrata	ANCESTRAL SPECIES	451															ENSGT00390000010948	ENSGT00940000156749 #22
Gnathostomata	ANCESTRAL SPECIES	579														ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000182998.C.a	ENSGT00950000183146.a.b ##24	ENSGT00440000038072.d
Euteleostomi	ANCESTRAL SPECIES	29	ENSGT00950000182937.B.b	ENSGT00390000007890	ENSGT00390000015797	ENSGT00390000018424	ENSGT00390000009583	ENSGT00950000182824.a.a.a	ENSGT00390000003526	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00950000182818.B	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Sarcopterygii	ANCESTRAL SPECIES	8	ENSGT00950000182937.B.b	ENSGT00390000007890	ENSGT00390000015797	ENSGT00390000018424	ENSGT00390000009583	ENSGT00950000182824.a.a.a	ENSGT00390000003526	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00950000182818.B	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT01030000234621.E	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36
Tetrapoda	ANCESTRAL SPECIES	5	ENSGT00950000182937.B.b	ENSGT00390000007890	ENSGT00390000015797	ENSGT00390000018424	ENSGT00390000009583	ENSGT00950000182824.a.a.a	ENSGT00390000003526	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00950000182818.B	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Amniota	ANCESTRAL SPECIES	5	ENSGT00950000182937.B.b	ENSGT00390000007890	ENSGT00390000015797	ENSGT00390000009583	ENSGT00950000182824.a.a.a	ENSGT00390000003526	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000179276	ENSGT00940000154932.A	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00960000189677	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00950000182818.B	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36
Mammalia	ANCESTRAL SPECIES	8	ENSGT00940000157502	ENSGT00950000182937.B.b	ENSGT00390000007890	ENSGT00390000018424	ENSGT00390000009583	ENSGT00950000182824.a.a.a	ENSGT00390000003526	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00960000189677	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Theria	ANCESTRAL SPECIES	2	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000161726	ENSGT00730000111596	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00960000189677	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Eutheria	ANCESTRAL SPECIES	1	ENSGT00940000165904	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00960000189677	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36
Boreoeutheria	ANCESTRAL SPECIES	6	ENSGT00940000162202.B ##7	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00960000189677	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36
Euarchontoglires	ANCESTRAL SPECIES	6	ENSGT00940000162202.B ##7	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Euarchontoglires_A	ANCESTRAL SPECIES	5	ENSGT00940000162202.B ##7	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Glires	ANCESTRAL SPECIES	4	ENSGT00940000162202.B ##7	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Rodentia	ANCESTRAL SPECIES	5	ENSGT00940000162202.C #7	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00940000168978	ENSGT00530000063554.b #36
Rodentia_B	ANCESTRAL SPECIES	3	ENSGT00940000162202.C #7	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Kangaroo rat	MODERN SPECIES	361	ENSDORG00000025213 #7	Zfp641 (ENSDORG00000011810) #8	ENSDORG00000027881 #9	ENSDORG00000027511 #10	Ccdc184 (ENSDORG00000000096) #11	Asb8 (ENSDORG00000027268) #12	Pfkm (ENSDORG00000000094) #13	Senp1 (ENSDORG00000000092) #14	Col2a1 (ENSDORG00000012020) #15	Tmem106c (ENSDORG00000012018) #16	ENSDORG00000027162 #17	Hdac7 (ENSDORG00000016267) #18	Slc48a1 (ENSDORG00000026104) #19	ENSDORG00000016264 #20	Endou (ENSDORG00000016263) #21	Rpap3 (ENSDORG00000006069) #22	Pced1b (ENSDORG00000028185) #23	Amigo2 (ENSDORG00000026278) #24	Slc38a4 (ENSDORG00000003163) #25	Slc38a2 (ENSDORG00000007910) #26	Slc38a1 (ENSDORG00000028155) #27	Scaf11 (ENSDORG00000002262) #28	Arid2 (ENSDORG00000012273) #29	Ano6 (ENSDORG00000011423) #30	ENSDORG00000008308 #31	Nell2 (ENSDORG00000010044) #32	Tmem117 (ENSDORG00000003811) #33	Twf1 (ENSDORG00000027567) #34	Irak4 (ENSDORG00000015110) #35	Pus7l (ENSDORG00000015109) #36	Adamts20 (ENSDORG00000013168) #37
Myomorpha	ANCESTRAL SPECIES	2	ENSGT00940000162202.C #7	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00900000143510	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36
Lesser Egyptian jerboa	MODERN SPECIES	157	ENSJJAG00000001609 #7	Zfp641 (ENSJJAG00000023912) #8	ENSJJAG00000014189	ENSJJAG00000023686	Ccdc184 (ENSJJAG00000014181) #11	ENSJJAG00000023643 #12	Pfkm (ENSJJAG00000021525) #13	Senp1 (ENSJJAG00000015040) #14	Col2a1 (ENSJJAG00000019255) #15	ENSJJAG00000015566	ENSJJAG00000013784 #17	Hdac7 (ENSJJAG00000021127) #18	Slc48a1 (ENSJJAG00000008709) #19	ENSJJAG00000019771 #20	Endou (ENSJJAG00000019156) #21	Rpap3 (ENSJJAG00000018688) #22	Amigo2 (ENSJJAG00000018293) #24	Slc38a4 (ENSJJAG00000015534) #25	ENSJJAG00000014336	Slc38a2 (ENSJJAG00000013665) #26	Slc38a1 (ENSJJAG00000013537) #27	ENSJJAG00000012055	Scaf11 (ENSJJAG00000009595) #28	ENSJJAG00000003064 #29	ENSJJAG00000020460 #29	ENSJJAG00000018413	Ano6 (ENSJJAG00000015358) #30	Dbx2 (ENSJJAG00000014537) #31	ENSJJAG00000011568	Nell2 (ENSJJAG00000008540) #32	Tmem117 (ENSJJAG00000011809) #33
Muroidea	ANCESTRAL SPECIES	31	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a.f.b #10	ENSGT01100000263574.a.f.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00900000143510	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	1138			ENSNGAG00000011812 #10	ENSNGAG00000017567 #10	Ccdc184 (ENSNGAG00000007436) #11	Asb8 (ENSNGAG00000018172) #12	Pfkm (ENSNGAG00000020307) #13	Senp1 (ENSNGAG00000021029) #14	Col2a1 (ENSNGAG00000003216) #15	ENSNGAG00000017065	ENSNGAG00000011996 #17	Hdac7 (ENSNGAG00000017210) #18	Slc48a1 (ENSNGAG00000013864) #19	Rapgef3 (ENSNGAG00000021251) #20	Endou (ENSNGAG00000019900) #21	Rpap3 (ENSNGAG00000021591) #22	Amigo2 (ENSNGAG00000001744) #24	Slc38a4 (ENSNGAG00000006968) #25	ENSNGAG00000017653	ENSNGAG00000018530 #26	Slc38a1 (ENSNGAG00000019998) #27	Scaf11 (ENSNGAG00000001164) #28	ENSNGAG00000011742 #29	ENSNGAG00000007967 #29
Muroidea_A	ANCESTRAL SPECIES	9	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a.f.b #10	ENSGT01100000263574.a.f.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Cricetidae	ANCESTRAL SPECIES	10	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a.f.b #10	ENSGT01100000263574.a.f.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Cricetinae	ANCESTRAL SPECIES	3	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a.f.b #10	ENSGT01100000263574.a.f.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Golden Hamster	MODERN SPECIES	626	H1f7 (ENSMAUG00000010839)	ENSMAUG00000014007	ENSMAUG00000019216	Ccdc184 (ENSMAUG00000010780) #11	Asb8 (ENSMAUG00000019139) #12	Pfkm (ENSMAUG00000016492) #13	ENSMAUG00000015838	ENSMAUG00000015983 #14	Col2a1 (ENSMAUG00000019899) #15	Tmem106c (ENSMAUG00000017478) #16	Vdr (ENSMAUG00000015419) #17	Hdac7 (ENSMAUG00000020243) #18	Slc48a1 (ENSMAUG00000019302) #19	Rapgef3 (ENSMAUG00000018637) #20	Endou (ENSMAUG00000013605) #21	Rpap3 (ENSMAUG00000018381) #22	Amigo2 (ENSMAUG00000010784) #24	Slc38a4 (ENSMAUG00000010661) #25	Slc38a2 (ENSMAUG00000009909) #26	Slc38a1 (ENSMAUG00000009292) #27	ENSMAUG00000010698	ENSMAUG00000010427	Scaf11 (ENSMAUG00000016564) #28	Arid2 (ENSMAUG00000010801) #29	Ano6 (ENSMAUG00000009991) #30	ENSMAUG00000009068	Nell2 (ENSMAUG00000011805) #32	Tmem117 (ENSMAUG00000011415) #33	Twf1 (ENSMAUG00000010896) #34	Irak4 (ENSMAUG00000015813) #35	Pus7l (ENSMAUG00000012622) #36
Chinese hamster chok1gshd	MODERN SPECIES	1	ENSCGRG00001009005	ENSCGRG00001008716 #10	ENSCGRG00001004363 #10	Ccdc184 (ENSCGRG00001009478) #11	ENSCGRG00001001830	Asb8 (ENSCGRG00001010162) #12	Pfkm (ENSCGRG00001000911) #13	Senp1 (ENSCGRG00001003916) #14	Col2a1 (ENSCGRG00001000766) #15	Tmem106c (ENSCGRG00001001872) #16	Vdr (ENSCGRG00001003356) #17	Hdac7 (ENSCGRG00001023917) #18	Slc48a1 (ENSCGRG00001012997) #19	Rapgef3 (ENSCGRG00001008173) #20	Endou (ENSCGRG00001001419) #21	Rpap3 (ENSCGRG00001010868) #22	Pced1b (ENSCGRG00001009722) #23	Amigo2 (ENSCGRG00001009389) #24	ENSCGRG00001000597 #26	Slc38a2 (ENSCGRG00001001349) #26	Slc38a1 (ENSCGRG00001013047) #27	Scaf11 (ENSCGRG00001000868) #28	Arid2 (ENSCGRG00001004106) #29	ENSCGRG00001023780	Ano6 (ENSCGRG00001003724) #30	ENSCGRG00001001693	Dbx2 (ENSCGRG00001002554) #31	Nell2 (ENSCGRG00001001600) #32	Tmem117 (ENSCGRG00001004267) #33	Twf1 (ENSCGRG00001002511) #34	Irak4 (ENSCGRG00001008384) #35
Cricetidae_B	ANCESTRAL SPECIES	6	ENSGT00940000162202.C #7	ENSGT00940000162121 #8	ENSGT01100000263574.a.f.b #10	ENSGT01100000263574.a.f.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Prairie vole	MODERN SPECIES	2	ENSMOCG00000001245 #10	ENSMOCG00000001175 #10	Ccdc184 (ENSMOCG00000003788) #11	Asb8 (ENSMOCG00000017776) #12	Pfkm (ENSMOCG00000021333) #13	ENSMOCG00000015383	ENSMOCG00000002706 #14	Col2a1 (ENSMOCG00000014833) #15	Tmem106c (ENSMOCG00000016714) #16	ENSMOCG00000013472 #17	Hdac7 (ENSMOCG00000019731) #18	Slc48a1 (ENSMOCG00000013448) #19	Rapgef3 (ENSMOCG00000002335) #20	Endou (ENSMOCG00000015012) #21	ENSMOCG00000005623	Rpap3 (ENSMOCG00000021033) #22	Pced1b (ENSMOCG00000005496) #23	Amigo2 (ENSMOCG00000013021) #24	Slc38a4 (ENSMOCG00000015247) #25	Slc38a2 (ENSMOCG00000003601) #26	Slc38a1 (ENSMOCG00000006739) #27	Scaf11 (ENSMOCG00000000678) #28	ENSMOCG00000019972 #29	ENSMOCG00000016077 #29	Ano6 (ENSMOCG00000018323) #30	Nell2 (ENSMOCG00000002600) #32	ENSMOCG00000008187	ENSMOCG00000015409	Cyp11b1 (ENSMOCG00000020170)	Cyp11b2 (ENSMOCG00000001733)	Ly6m (ENSMOCG00000018758)
Northern American deer mouse	MODERN SPECIES	12	Zfp641 (ENSPEMG00000026282) #8	ENSPEMG00000030364 #10	ENSPEMG00000028880 #10	ENSPEMG00000026188 #10	Ccdc184 (ENSPEMG00000014959) #11	Asb8 (ENSPEMG00000026668) #12	Pfkm (ENSPEMG00000009521) #13	Senp1 (ENSPEMG00000030376) #14	Col2a1 (ENSPEMG00000012994) #15	Tmem106c (ENSPEMG00000003606) #16	Vdr (ENSPEMG00000026662) #17	Hdac7 (ENSPEMG00000008893) #18	Slc48a1 (ENSPEMG00000026517) #19	Rapgef3 (ENSPEMG00000013140) #20	Endou (ENSPEMG00000000039) #21	Rpap3 (ENSPEMG00000017686) #22	Pced1b (ENSPEMG00000017062) #23	Amigo2 (ENSPEMG00000014410) #24	Slc38a4 (ENSPEMG00000012063) #25	Slc38a2 (ENSPEMG00000016717) #26	ENSPEMG00000027302 #27	ENSPEMG00000030307	Arid2 (ENSPEMG00000014806) #29	ENSPEMG00000030605	Ano6 (ENSPEMG00000022036) #30	Dbx2 (ENSPEMG00000021509) #31	Nell2 (ENSPEMG00000021060) #32	ENSPEMG00000024666	Tmem117 (ENSPEMG00000006395) #33	Twf1 (ENSPEMG00000000838) #34	Irak4 (ENSPEMG00000018737) #35
Murinae	ANCESTRAL SPECIES	10	ENSGT00940000162202.C #7	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a.f.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Rat	MODERN SPECIES	17	H1f7 (ENSRNOG00000029545)	Olr1877 (ENSRNOG00000070612) #10	Olfr287 (ENSRNOG00000066134) #10	Or10ad1 (ENSRNOG00000064488) #10	Ccdc184 (ENSRNOG00000021945) #11	Asb8 (ENSRNOG00000010099) #12	Pfkm (ENSRNOG00000057988) #13	Senp1 (ENSRNOG00000022260) #14	Col2a1 (ENSRNOG00000058560) #15	Tmem106c (ENSRNOG00000053269) #16	Vdr (ENSRNOG00000054420) #17	Hdac7 (ENSRNOG00000055597) #18	Slc48a1 (ENSRNOG00000053196) #19	Rapgef3 (ENSRNOG00000059961) #20	Endou (ENSRNOG00000056446) #21	Rpap3 (ENSRNOG00000053405) #22	RGD1565798 (ENSRNOG00000002475)	Pced1b (ENSRNOG00000022807) #23	Amigo2 (ENSRNOG00000007032) #24	Slc38a4 (ENSRNOG00000006653) #25	Slc38a2 (ENSRNOG00000006305) #26	Slc38a1 (ENSRNOG00000005291) #27	RGD1564963 (ENSRNOG00000069806)	Scaf11 (ENSRNOG00000005263) #28	Arid2 (ENSRNOG00000004831) #29	ENSRNOG00000067243	Ano6 (ENSRNOG00000006995) #30	Dbx2 (ENSRNOG00000006885) #31	Nell2 (ENSRNOG00000006235) #32	Tmem117 (ENSRNOG00000006068) #33	ENSRNOG00000064416
Mus	ANCESTRAL SPECIES	11	ENSGT00730000111596	ENSGT01100000263574.a.f.a.f #10	ENSGT01100000263574.a.f.a.e.a #10	ENSGT01100000263574.a.f.a.e.b #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00860000136064	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36
Shrew mouse	MODERN SPECIES	8	Zfp641 (MGP_PahariEiJ_G0020230) #8	H1f7 (MGP_PahariEiJ_G0020229)	MGP_PahariEiJ_G0020228 #10	MGP_PahariEiJ_G0020227 #10	Ccdc184 (MGP_PahariEiJ_G0020226) #11	Asb8 (MGP_PahariEiJ_G0020225) #12	Pfkm (MGP_PahariEiJ_G0020224) #13	Senp1 (MGP_PahariEiJ_G0020223) #14	Col2a1 (MGP_PahariEiJ_G0020222) #15	Tmem106c (MGP_PahariEiJ_G0020221) #16	Vdr (MGP_PahariEiJ_G0020220) #17	Hdac7 (MGP_PahariEiJ_G0020219) #18	Slc48a1 (MGP_PahariEiJ_G0020218) #19	Rapgef3 (MGP_PahariEiJ_G0020217) #20	Endou (MGP_PahariEiJ_G0020216) #21	Rpap3 (MGP_PahariEiJ_G0020215) #22	Pced1b (MGP_PahariEiJ_G0020214) #23	Amigo2 (MGP_PahariEiJ_G0020213) #24	Slc38a4 (MGP_PahariEiJ_G0020212) #25	Slc38a2 (MGP_PahariEiJ_G0020211) #26	Slc38a1 (MGP_PahariEiJ_G0020210) #27	Scaf11 (MGP_PahariEiJ_G0020209) #28	Arid2 (MGP_PahariEiJ_G0020208) #29	MGP_PahariEiJ_G0020207	Ano6 (MGP_PahariEiJ_G0020206) #30	MGP_PahariEiJ_G0020205	Dbx2 (MGP_PahariEiJ_G0020204) #31	Nell2 (MGP_PahariEiJ_G0020203) #32	Tmem117 (MGP_PahariEiJ_G0020202) #33	Twf1 (MGP_PahariEiJ_G0020201) #34	Irak4 (MGP_PahariEiJ_G0020200) #35
Mus_A	DUPLICATION
Mus_A	ANCESTRAL SPECIES	13	ENSGT00730000111596	ENSGT01100000263574.a.f.a.e.b.a.a #10	ENSGT01100000263574.a.f.a.f #10	ENSGT01100000263574.a.f.a.e.b.a.b #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749.c #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00860000136064	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36
Mus_B	ANCESTRAL SPECIES	12	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a.f.a.f #10	ENSGT01100000263574.a.f.a.e.b.a.b #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749.c #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00860000136064	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36
Mus_C	ANCESTRAL SPECIES	17	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a.f.a.f #10	ENSGT01100000263574.a.f.a.e.b.a.b #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749.c #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00860000136064	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36
Steppe mouse	MODERN SPECIES	3265											Vdr (ENSMSIG00000028053) #17	Hdac7 (ENSMSIG00000027292) #18	Slc48a1 (ENSMSIG00000027281) #19	Rapgef3 (ENSMSIG00000027208) #20	Endou (ENSMSIG00000027161) #21	Rpap3 (ENSMSIG00000027120) #22	Pced1b (ENSMSIG00000027114) #23	Amigo2 (ENSMSIG00000027100) #24	Slc38a4 (ENSMSIG00000027038) #25	Slc38a2 (ENSMSIG00000027016) #26	Slc38a1 (ENSMSIG00000026985) #27	Scaf11 (ENSMSIG00000026922) #28	Arid2 (ENSMSIG00000026910) #29	ENSMSIG00000026901	Ano6 (ENSMSIG00000026819) #30	Dbx2 (ENSMSIG00000026810) #31	ENSMSIG00000026795	Nell2 (ENSMSIG00000026630) #32	Tmem117 (ENSMSIG00000026602) #33
spretus	MODERN SPECIES	6	Zfp641 (MGP_SPRETEiJ_G0021123) #8	H1f7 (MGP_SPRETEiJ_G0021122)	MGP_SPRETEiJ_G0021121 #10	MGP_SPRETEiJ_G0021120 #10	Ccdc184 (MGP_SPRETEiJ_G0021119) #11	Asb8 (MGP_SPRETEiJ_G0021118) #12	Pfkm (MGP_SPRETEiJ_G0021117) #13	Senp1 (MGP_SPRETEiJ_G0021116) #14	Col2a1 (MGP_SPRETEiJ_G0021115) #15	Tmem106c (MGP_SPRETEiJ_G0021114) #16	Vdr (MGP_SPRETEiJ_G0021113) #17	Hdac7 (MGP_SPRETEiJ_G0021112) #18	Slc48a1 (MGP_SPRETEiJ_G0021111) #19	Rapgef3 (MGP_SPRETEiJ_G0021110) #20	MGP_SPRETEiJ_G0021109 #21	Rpap3 (MGP_SPRETEiJ_G0021108) #22	Pced1b (MGP_SPRETEiJ_G0021107) #23	Amigo2 (MGP_SPRETEiJ_G0021106) #24	Slc38a4 (MGP_SPRETEiJ_G0021105) #25	MGP_SPRETEiJ_G0021104	Slc38a2 (MGP_SPRETEiJ_G0021103) #26	Slc38a1 (MGP_SPRETEiJ_G0021102) #27	Scaf11 (MGP_SPRETEiJ_G0021101) #28	Arid2 (MGP_SPRETEiJ_G0021100) #29	MGP_SPRETEiJ_G0021099	Ano6 (MGP_SPRETEiJ_G0021098) #30	MGP_SPRETEiJ_G0021097	Dbx2 (MGP_SPRETEiJ_G0021096) #31	Nell2 (MGP_SPRETEiJ_G0021095) #32	Tmem117 (MGP_SPRETEiJ_G0021094) #33	Twf1 (MGP_SPRETEiJ_G0021093) #34
Mouse	MODERN SPECIES	6	Or10ad1b (ENSMUSG00000059460) #10	Or10ad1 (ENSMUSG00000090129) #10	Gm44579 (ENSMUSG00000108748)	Or10ad1c (ENSMUSG00000075427) #10	Ccdc184 (ENSMUSG00000029875) #11	Asb8 (ENSMUSG00000048175) #12	Pfkm (ENSMUSG00000033065) #13	Senp1 (ENSMUSG00000033075) #14	Col2a1 (ENSMUSG00000022483) #15	Tmem106c (ENSMUSG00000052369) #16	Vdr (ENSMUSG00000022479) #17	Hdac7 (ENSMUSG00000022475) #18	Slc48a1 (ENSMUSG00000081534) #19	Rapgef3 (ENSMUSG00000022469) #20	Endou (ENSMUSG00000022468) #21	Rpap3 (ENSMUSG00000022466) #22	Pced1b (ENSMUSG00000044250) #23	Amigo2 (ENSMUSG00000048218) #24	Slc38a4 (ENSMUSG00000022464) #25	Slc38a2 (ENSMUSG00000022462) #26	Slc38a1 (ENSMUSG00000023169) #27	Scaf11 (ENSMUSG00000033228) #28	Arid2 (ENSMUSG00000033237) #29	Ano6 (ENSMUSG00000064210) #30	Dbx2 (ENSMUSG00000045608) #31	Nell2 (ENSMUSG00000022454) #32	Tmem117 (ENSMUSG00000063296) #33	Twf1 (ENSMUSG00000022451) #34	Irak4 (ENSMUSG00000059883) #35	Pus7l (ENSMUSG00000033356) #36	Adamts20 (ENSMUSG00000022449) #37
Ryukyu mouse	MODERN SPECIES	6	Zfp641 (MGP_CAROLIEiJ_G0020227) #8	H1f7 (MGP_CAROLIEiJ_G0020226)	MGP_CAROLIEiJ_G0020225 #10	MGP_CAROLIEiJ_G0020224 #10	Ccdc184 (MGP_CAROLIEiJ_G0020223) #11	Asb8 (MGP_CAROLIEiJ_G0020222) #12	Pfkm (MGP_CAROLIEiJ_G0020221) #13	Senp1 (MGP_CAROLIEiJ_G0020220) #14	Col2a1 (MGP_CAROLIEiJ_G0020219) #15	Tmem106c (MGP_CAROLIEiJ_G0020218) #16	Vdr (MGP_CAROLIEiJ_G0020217) #17	Hdac7 (MGP_CAROLIEiJ_G0020216) #18	Slc48a1 (MGP_CAROLIEiJ_G0020215) #19	Rapgef3 (MGP_CAROLIEiJ_G0020214) #20	MGP_CAROLIEiJ_G0020213 #21	Rpap3 (MGP_CAROLIEiJ_G0020212) #22	Pced1b (MGP_CAROLIEiJ_G0020211) #23	Amigo2 (MGP_CAROLIEiJ_G0020210) #24	Slc38a4 (MGP_CAROLIEiJ_G0020209) #25	MGP_CAROLIEiJ_G0020208	Slc38a2 (MGP_CAROLIEiJ_G0020207) #26	Slc38a1 (MGP_CAROLIEiJ_G0020206) #27	Scaf11 (MGP_CAROLIEiJ_G0020205) #28	Arid2 (MGP_CAROLIEiJ_G0020204) #29	MGP_CAROLIEiJ_G0020203	Ano6 (MGP_CAROLIEiJ_G0020202) #30	MGP_CAROLIEiJ_G0020201	MGP_CAROLIEiJ_G0020200 #31	Nell2 (MGP_CAROLIEiJ_G0020199) #32	Tmem117 (MGP_CAROLIEiJ_G0020198) #33	Twf1 (MGP_CAROLIEiJ_G0020197) #34
Mus_A	ANCESTRAL SPECIES																	ENSGT00940000156749.d #22
Mus_B	ANCESTRAL SPECIES																	ENSGT00940000156749.d #22
Mus_C	ANCESTRAL SPECIES																	ENSGT00940000156749.d #22
Steppe mouse	MODERN SPECIES	3006														ENSMSIG00000030680	ENSMSIG00000030677	ENSMSIG00000030674 #22
Rodentia_A	ANCESTRAL SPECIES	4	ENSGT00940000162202.C #7	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00940000168978	ENSGT00530000063554.b #36
Hystricomorpha	ANCESTRAL SPECIES	9	ENSGT00940000162202.B ##7	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Hystricomorpha_a	ANCESTRAL SPECIES	7	ENSGT00940000162202.A ##7	ENSGT00940000162202.B ##7	ENSGT00940000162121 #8	ENSGT01100000263574.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Guinea pig	MODERN SPECIES	9	ENSCPOG00000036505 ##7	ZNF641 (ENSCPOG00000002770) #8	ENSCPOG00000012386 #10	ENSCPOG00000030096 #10	CCDC184 (ENSCPOG00000008369) #11	ASB8 (ENSCPOG00000030353) #12	PFKM (ENSCPOG00000008351) #13	SENP1 (ENSCPOG00000008340) #14	COL2A1 (ENSCPOG00000000832) #15	TMEM106C (ENSCPOG00000008335) #16	VDR (ENSCPOG00000036166) #17	HDAC7 (ENSCPOG00000006013) #18	SLC48A1 (ENSCPOG00000025631) #19	RAPGEF3 (ENSCPOG00000006002) #20	ENDOU (ENSCPOG00000005999) #21	RPAP3 (ENSCPOG00000002785) #22	AMIGO2 (ENSCPOG00000030831) #24	SLC38A4 (ENSCPOG00000010106) #25	SLC38A2 (ENSCPOG00000003746) #26	SLC38A1 (ENSCPOG00000005301) #27	SCAF11 (ENSCPOG00000005084) #28	ARID2 (ENSCPOG00000035312) #29	ANO6 (ENSCPOG00000013577) #30	DBX2 (ENSCPOG00000011069) #31	NELL2 (ENSCPOG00000000976) #32	TMEM117 (ENSCPOG00000015520) #33	TWF1 (ENSCPOG00000001499) #34	IRAK4 (ENSCPOG00000001771) #35	PUS7L (ENSCPOG00000001769) #36	ADAMTS20 (ENSCPOG00000005119) #37	PRICKLE1 (ENSCPOG00000005579)
Hystricomorpha_b	ANCESTRAL SPECIES	78	ENSGT00940000162202.A ##7	ENSGT00940000162202.B ##7	ENSGT00940000162121 #8	ENSGT01100000263574.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Long-tailed chinchilla	MODERN SPECIES	207	ZNF641 (ENSCLAG00000002291) #8	OR10AD1 (ENSCLAG00000002006) #10	CCDC184 (ENSCLAG00000017612) #11	ASB8 (ENSCLAG00000003759) #12	PFKM (ENSCLAG00000003014) #13	SENP1 (ENSCLAG00000015346) #14	COL2A1 (ENSCLAG00000011781) #15	TMEM106C (ENSCLAG00000008066) #16	VDR (ENSCLAG00000007173) #17	HDAC7 (ENSCLAG00000003217) #18	SLC48A1 (ENSCLAG00000002169) #19	RAPGEF3 (ENSCLAG00000001881) #20	ENDOU (ENSCLAG00000001806) #21	ENSCLAG00000001789	ENSCLAG00000003956	RPAP3 (ENSCLAG00000003507) #22	PCED1B (ENSCLAG00000017610) #23	AMIGO2 (ENSCLAG00000003032) #24	SLC38A4 (ENSCLAG00000002757) #25	SLC38A2 (ENSCLAG00000002651) #26	SLC38A1 (ENSCLAG00000002175) #27	SCAF11 (ENSCLAG00000002050) #28	ARID2 (ENSCLAG00000001973) #29	ANO6 (ENSCLAG00000002430) #30	DBX2 (ENSCLAG00000002211) #31	ENSCLAG00000002122	NELL2 (ENSCLAG00000002075) #32	TMEM117 (ENSCLAG00000002010) #33	ENSCLAG00000003492 #34	IRAK4 (ENSCLAG00000002656) #35	PUS7L (ENSCLAG00000002416) #36
Degu	MODERN SPECIES	141	ENSODEG00000003293 ##7	ZNF641 (ENSODEG00000003266) #8	ENSODEG00000003244	ENSODEG00000003231	CCDC184 (ENSODEG00000019270) #11	ASB8 (ENSODEG00000004323) #12	PFKM (ENSODEG00000004315) #13	SENP1 (ENSODEG00000004260) #14	COL2A1 (ENSODEG00000004221) #15	TMEM106C (ENSODEG00000004196) #16	ENSODEG00000004180 #17	HDAC7 (ENSODEG00000003964) #18	SLC48A1 (ENSODEG00000003853) #19	RAPGEF3 (ENSODEG00000003613) #20	ENDOU (ENSODEG00000003517) #21	RPAP3 (ENSODEG00000003489) #22	PCED1B (ENSODEG00000003479) #23	ENSODEG00000018996	AMIGO2 (ENSODEG00000018958) #24	ENSODEG00000003462 #26	ENSODEG00000003450	SLC38A2 (ENSODEG00000003379) #26	SLC38A1 (ENSODEG00000003269) #27	SCAF11 (ENSODEG00000003223) #28	ENSODEG00000019076	ENSODEG00000004013	ARID2 (ENSODEG00000003976) #29	ENSODEG00000003928	ENSODEG00000018973	ENSODEG00000018965	ENSODEG00000003909
Naked mole-rat female	MODERN SPECIES	8	ENSHGLG00000033180	ENSHGLG00000046091	ENSHGLG00000037629 #10	OR10AD1 (ENSHGLG00000045918) #10	CCDC184 (ENSHGLG00000035592) #11	ASB8 (ENSHGLG00000042429) #12	PFKM (ENSHGLG00000013968) #13	SENP1 (ENSHGLG00000006533) #14	COL2A1 (ENSHGLG00000017846) #15	TMEM106C (ENSHGLG00000017877) #16	VDR (ENSHGLG00000007266) #17	HDAC7 (ENSHGLG00000007344) #18	ENSHGLG00000007669 #19	RAPGEF3 (ENSHGLG00000008298) #20	ENSHGLG00000010083 #21	ENSHGLG00000007537 #22	ENSHGLG00000006143	ENSHGLG00000041288	PCED1B (ENSHGLG00000041863) #23	AMIGO2 (ENSHGLG00000007945) #24	SLC38A4 (ENSHGLG00000009281) #25	ENSHGLG00000042041	ENSHGLG00000037591	SLC38A2 (ENSHGLG00000011224) #26	SLC38A1 (ENSHGLG00000003895) #27	ENSHGLG00000004205	ENSHGLG00000018154	SCAF11 (ENSHGLG00000050736) #28	ARID2 (ENSHGLG00000005387) #29	ANO6 (ENSHGLG00000004355) #30	ENSHGLG00000047418
Sciuridae	ANCESTRAL SPECIES	15	ENSGT00940000162202.C #7	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00940000168978	ENSGT00530000063554.b #36
Marmotini	ANCESTRAL SPECIES	19	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a.g #10	ENSGT01100000263574.a.h #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Marmotini_b	ANCESTRAL SPECIES	11	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a.g #10	ENSGT01100000263574.a.h #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Squirrel	MODERN SPECIES	112	ENSSTOG00000033341 #7	ZNF641 (ENSSTOG00000001970) #8	OR10AD1 (ENSSTOG00000001963) #10	CCDC184 (ENSSTOG00000001957) #11	ASB8 (ENSSTOG00000024076) #12	PFKM (ENSSTOG00000001938) #13	SENP1 (ENSSTOG00000001924) #14	COL2A1 (ENSSTOG00000001893) #15	ENSSTOG00000033063	VDR (ENSSTOG00000026741) #17	HDAC7 (ENSSTOG00000001863) #18	SLC48A1 (ENSSTOG00000027173) #19	RAPGEF3 (ENSSTOG00000000974) #20	ENSSTOG00000033662	ENDOU (ENSSTOG00000000959) #21	RPAP3 (ENSSTOG00000000949) #22	ENSSTOG00000033592 #23	AMIGO2 (ENSSTOG00000024156) #24	SLC38A4 (ENSSTOG00000010271) #25	SLC38A2 (ENSSTOG00000016307) #26	SLC38A1 (ENSSTOG00000016301) #27	SCAF11 (ENSSTOG00000004902) #28	ARID2 (ENSSTOG00000008936) #29	ANO6 (ENSSTOG00000024923) #30	DBX2 (ENSSTOG00000000232) #31	NELL2 (ENSSTOG00000019850) #32	TMEM117 (ENSSTOG00000025184) #33	TWF1 (ENSSTOG00000006470) #34	IRAK4 (ENSSTOG00000013841) #35	PUS7L (ENSSTOG00000006445) #36	ADAMTS20 (ENSSTOG00000012059) #37
Arctic ground squirrel	MODERN SPECIES	232	ENSUPAG00010002409 #7	ZNF641 (ENSUPAG00010002416) #8	H1-7 (ENSUPAG00010002437)	OR10AD1 (ENSUPAG00010002446) #10	CCDC184 (ENSUPAG00010002458) #11	ASB8 (ENSUPAG00010002462) #12	PFKM (ENSUPAG00010002472) #13	SENP1 (ENSUPAG00010002512) #14	COL2A1 (ENSUPAG00010002564) #15	TMEM106C (ENSUPAG00010002722) #16	VDR (ENSUPAG00010002773) #17	HDAC7 (ENSUPAG00010002786) #18	SLC48A1 (ENSUPAG00010003035) #19	RAPGEF3 (ENSUPAG00010003042) #20	ENDOU (ENSUPAG00010003317) #21	RPAP3 (ENSUPAG00010003351) #22	PCED1B (ENSUPAG00010003361) #23	AMIGO2 (ENSUPAG00010003366) #24	SLC38A4 (ENSUPAG00010003369) #25	SLC38A2 (ENSUPAG00010003447) #26	SLC38A1 (ENSUPAG00010003457) #27	SCAF11 (ENSUPAG00010003501) #28	ARID2 (ENSUPAG00010003534) #29	ANO6 (ENSUPAG00010003581) #30
Alpin marmot	MODERN SPECIES	34	ZNF641 (ENSMMMG00000022873) #8	H1-7 (ENSMMMG00000022871)	ENSMMMG00000022868 #10	ENSMMMG00000022866 #10	CCDC184 (ENSMMMG00000022863) #11	ASB8 (ENSMMMG00000022857) #12	PFKM (ENSMMMG00000022833) #13	SENP1 (ENSMMMG00000022823) #14	COL2A1 (ENSMMMG00000022770) #15	TMEM106C (ENSMMMG00000022764) #16	VDR (ENSMMMG00000022758) #17	HDAC7 (ENSMMMG00000022728) #18	SLC48A1 (ENSMMMG00000022726) #19	RAPGEF3 (ENSMMMG00000022694) #20	ENDOU (ENSMMMG00000022689) #21	RPAP3 (ENSMMMG00000022685) #22	PCED1B (ENSMMMG00000022679) #23	ENSMMMG00000022677	AMIGO2 (ENSMMMG00000022674) #24	SLC38A4 (ENSMMMG00000022665) #25	SLC38A2 (ENSMMMG00000022659) #26	SLC38A1 (ENSMMMG00000022650) #27	SCAF11 (ENSMMMG00000022640) #28	ARID2 (ENSMMMG00000022637) #29	ANO6 (ENSMMMG00000022622) #30	DBX2 (ENSMMMG00000022619) #31	NELL2 (ENSMMMG00000022605) #32	TMEM117 (ENSMMMG00000022603) #33	TWF1 (ENSMMMG00000022600) #34	IRAK4 (ENSMMMG00000022596) #35	ENSMMMG00000022591
Eurasian red squirrel	MODERN SPECIES	14	ZNF641 (ENSSVLG00005010861) #8	H1-7 (ENSSVLG00005010817)	OR10AD1 (ENSSVLG00005010756) #10	CCDC184 (ENSSVLG00005010675) #11	ASB8 (ENSSVLG00005010618) #12	PFKM (ENSSVLG00005010346) #13	SENP1 (ENSSVLG00005010219) #14	COL2A1 (ENSSVLG00005009560) #15	TMEM106C (ENSSVLG00005009433) #16	ENSSVLG00005009403	VDR (ENSSVLG00005009383) #17	HDAC7 (ENSSVLG00005008826) #18	SLC48A1 (ENSSVLG00005008734) #19	RAPGEF3 (ENSSVLG00005008443) #20	ENDOU (ENSSVLG00005008365) #21	RPAP3 (ENSSVLG00005008306) #22	PCED1B (ENSSVLG00005008259) #23	AMIGO2 (ENSSVLG00005008248) #24	SLC38A4 (ENSSVLG00005008149) #25	SLC38A2 (ENSSVLG00005007998) #26	SLC38A1 (ENSSVLG00005007955) #27	SCAF11 (ENSSVLG00005007909) #28	ARID2 (ENSSVLG00005007791) #29	EEF2 (ENSSVLG00005007723)	ANO6 (ENSSVLG00005007489) #30	DBX2 (ENSSVLG00005007393) #31	NELL2 (ENSSVLG00005007103) #32	TMEM117 (ENSSVLG00005006963) #33	TWF1 (ENSSVLG00005006901) #34	IRAK4 (ENSSVLG00005006847) #35	ENSSVLG00005024271
Lagomorpha	ANCESTRAL SPECIES	27													ENSGT00390000002307 #19	ENSGT00940000159931.o #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Rabbit	MODERN SPECIES	19											SLC48A1 (ENSOCUG00000027062) #19	ENSOCUG00000037989 #20	ENSOCUG00000023758 #20	ENSOCUG00000030008 #20	ENDOU (ENSOCUG00000007366) #21	RPAP3 (ENSOCUG00000002316) #22	ENSOCUG00000031745	PCED1B (ENSOCUG00000004791) #23	ENSOCUG00000009258 #24	SLC38A4 (ENSOCUG00000027198) #25	SLC38A2 (ENSOCUG00000009943) #26	SLC38A1 (ENSOCUG00000005164) #27	SCAF11 (ENSOCUG00000003899) #28	ARID2 (ENSOCUG00000013306) #29	ANO6 (ENSOCUG00000000185) #30	ENSOCUG00000022068 #31	NELL2 (ENSOCUG00000016727) #32	TMEM117 (ENSOCUG00000004124) #33	TWF1 (ENSOCUG00000004113) #34	IRAK4 (ENSOCUG00000004103) #35	PUS7L (ENSOCUG00000004093) #36
Pika	MODERN SPECIES	3793															ENSOPRG00000001615 #21	ENSOPRG00000001582 #22
Tree shrew	MODERN SPECIES	1223													HDAC7 (ENSTBEG00000017000) #18	RAPGEF3 (ENSTBEG00000016907) #20	ENDOU (ENSTBEG00000016761) #21	RPAP3 (ENSTBEG00000016711) #22
Primates	ANCESTRAL SPECIES	6	ENSGT00940000162202.B ##7	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Haplorrhini	ANCESTRAL SPECIES	3	ENSGT00940000162202.A ##7	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Simiiformes	ANCESTRAL SPECIES	4	ENSGT00940000162202.A ##7	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Catarrhini	ANCESTRAL SPECIES	4	ENSGT00730000111596	ENSGT01100000263574.a #10	ENSGT00910000147030	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT01050000248304	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00910000147692	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36
Hominoidea	ANCESTRAL SPECIES	5	ENSGT01100000263574.a #10	ENSGT00910000147030	ENSGT00390000002978 #11	ENSGT00950000183070.a.b.g.b.a.c.a	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT01050000248304	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00910000147692	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36
Hominidae	ANCESTRAL SPECIES	4	ENSGT00390000002978 #11	ENSGT00950000183070.a.b.g.b.a.c.a	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00390000013208.y.b	ENSGT00940000155489.b.f #14	ENSGT00390000013208.z	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT01050000248304	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00390000006304	ENSGT00940000155486 #26	ENSGT00910000147692	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00940000157288.f	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	5	ENSGT01100000263574.a #10	ENSGT00910000147030	ENSGT00390000002978 #11	ENSGT00950000183070.a.b.g.b.a.c.a	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f.d #14	ENSGT00390000013208.z	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00390000006304	ENSGT00940000155486 #26	ENSGT00910000147692	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00940000157288.f	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34
Homo/Pan group	ANCESTRAL SPECIES	6	ENSGT01100000263574.a #10	ENSGT00910000147030	ENSGT00390000002978 #11	ENSGT00950000183070.a.b.g.b.a.c.a	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f.d #14	ENSGT00390000013208.z	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00390000006304	ENSGT00940000155486 #26	ENSGT00910000147692	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35
Pan	ANCESTRAL SPECIES	4	ENSGT01100000263574.a #10	ENSGT00910000147030	ENSGT00390000002978 #11	ENSGT00950000183070.a.b.g.b.a.c.a	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f.d #14	ENSGT00390000013208.z	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00950000182922.a.a.a.a.v.a.a	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00390000006304	ENSGT00940000155486 #26	ENSGT00910000147692	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00940000157288.f	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33
Chimpanzee	MODERN SPECIES	3	ENSPTRG00000029704 #10	ENSPTRG00000045723	CCDC184 (ENSPTRG00000029702) #11	ENSPTRG00000048129	ASB8 (ENSPTRG00000004875) #12	PFKM (ENSPTRG00000004874) #13	SENP1 (ENSPTRG00000004872) #14	ENSPTRG00000050379	COL2A1 (ENSPTRG00000004871) #15	TMEM106C (ENSPTRG00000004870) #16	VDR (ENSPTRG00000042814) #17	HDAC7 (ENSPTRG00000004868) #18	SLC48A1 (ENSPTRG00000049903) #19	RAPGEF3 (ENSPTRG00000004866) #20	ENDOU (ENSPTRG00000004863) #21	RPAP3 (ENSPTRG00000004861) #22	ENSPTRG00000050788	PCED1B (ENSPTRG00000004860) #23	AMIGO2 (ENSPTRG00000048648) #24	SLC38A4 (ENSPTRG00000004858) #25	ENSPTRG00000049927	SLC38A2 (ENSPTRG00000004856) #26	SLC38A1 (ENSPTRG00000004855) #27	SCAF11 (ENSPTRG00000004854) #28	ARID2 (ENSPTRG00000004853) #29	ANO6 (ENSPTRG00000004850) #30	ENSPTRG00000045032	ENSPTRG00000052454	DBX2 (ENSPTRG00000004849) #31	NELL2 (ENSPTRG00000004848) #32	TMEM117 (ENSPTRG00000004847) #33
Bonobo	MODERN SPECIES	3	OR10AD1 (ENSPPAG00000006971) #10	ENSPPAG00000031405	CCDC184 (ENSPPAG00000001304) #11	ENSPPAG00000031624	ASB8 (ENSPPAG00000035275) #12	PFKM (ENSPPAG00000037410) #13	SENP1 (ENSPPAG00000044033) #14	ENSPPAG00000036796	ENSPPAG00000027130 #15	TMEM106C (ENSPPAG00000030564) #16	VDR (ENSPPAG00000037181) #17	HDAC7 (ENSPPAG00000041982) #18	ENSPPAG00000040249 #19	RAPGEF3 (ENSPPAG00000043182) #20	ENDOU (ENSPPAG00000036852) #21	RPAP3 (ENSPPAG00000033476) #22	ENSPPAG00000025908	PCED1B (ENSPPAG00000026608) #23	AMIGO2 (ENSPPAG00000017693) #24	SLC38A4 (ENSPPAG00000031819) #25	ENSPPAG00000007804	SLC38A2 (ENSPPAG00000030800) #26	ENSPPAG00000040430	SLC38A1 (ENSPPAG00000027005) #27	SCAF11 (ENSPPAG00000035920) #28	ARID2 (ENSPPAG00000043567) #29	ANO6 (ENSPPAG00000036432) #30	ENSPPAG00000038006	DBX2 (ENSPPAG00000036524) #31	NELL2 (ENSPPAG00000031637) #32	TMEM117 (ENSPPAG00000041379) #33
Human	MODERN SPECIES	3	ANP32D (ENSG00000139223)	ZNF641 (ENSG00000167528) #8	H1-7 (ENSG00000187166)	OR10AD1 (ENSG00000172640) #10	CCDC184 (ENSG00000177875) #11	ASB8 (ENSG00000177981) #12	PFKM (ENSG00000152556) #13	SENP1 (ENSG00000079387) #14	COL2A1 (ENSG00000139219) #15	TMEM106C (ENSG00000134291) #16	VDR (ENSG00000111424) #17	HDAC7 (ENSG00000061273) #18	SLC48A1 (ENSG00000211584) #19	RAPGEF3 (ENSG00000079337) #20	ENDOU (ENSG00000111405) #21	RPAP3 (ENSG00000005175) #22	PCED1B (ENSG00000179715) #23	AMIGO2 (ENSG00000139211) #24	SLC38A4 (ENSG00000139209) #25	SLC38A2 (ENSG00000134294) #26	SLC38A1 (ENSG00000111371) #27	SCAF11 (ENSG00000139218) #28	ARID2 (ENSG00000189079) #29	ANO6 (ENSG00000177119) #30	DBX2 (ENSG00000185610) #31	NELL2 (ENSG00000184613) #32	TMEM117 (ENSG00000139173) #33	TWF1 (ENSG00000151239) #34	IRAK4 (ENSG00000198001) #35	PUS7L (ENSG00000129317) #36	ADAMTS20 (ENSG00000173157) #37
Gorilla	MODERN SPECIES	3	OR10AD1 (ENSGGOG00000008264) #10	ENSGGOG00000023950	CCDC184 (ENSGGOG00000026078) #11	ENSGGOG00000041361	ASB8 (ENSGGOG00000006472) #12	PFKM (ENSGGOG00000006461) #13	SENP1 (ENSGGOG00000004325) #14	ENSGGOG00000001106	COL2A1 (ENSGGOG00000004310) #15	TMEM106C (ENSGGOG00000004302) #16	VDR (ENSGGOG00000016473) #17	HDAC7 (ENSGGOG00000016461) #18	ENSGGOG00000043812 #19	RAPGEF3 (ENSGGOG00000016430) #20	ENDOU (ENSGGOG00000016423) #21	RPAP3 (ENSGGOG00000024558) #22	PCED1B (ENSGGOG00000013022) #23	AMIGO2 (ENSGGOG00000038050) #24	SLC38A4 (ENSGGOG00000012966) #25	ENSGGOG00000025336	SLC38A2 (ENSGGOG00000001344) #26	ENSGGOG00000037868	SLC38A1 (ENSGGOG00000000005) #27	SCAF11 (ENSGGOG00000014885) #28	ARID2 (ENSGGOG00000013896) #29	ANO6 (ENSGGOG00000004865) #30	ENSGGOG00000022530	DBX2 (ENSGGOG00000004664) #31	NELL2 (ENSGGOG00000007812) #32	TMEM117 (ENSGGOG00000028620) #33	TWF1 (ENSGGOG00000005679) #34
Orangutan	MODERN SPECIES	3	ZNF641 (ENSPPYG00000036320) #8	CCDC184 (ENSPPYG00000004455) #11	ENSPPYG00000038285	ASB8 (ENSPPYG00000038698) #12	PFKM (ENSPPYG00000004453) #13	ENSPPYG00000031101	SENP1 (ENSPPYG00000004452) #14	COL2A1 (ENSPPYG00000004451) #15	TMEM106C (ENSPPYG00000004450) #16	VDR (ENSPPYG00000004448) #17	ENSPPYG00000032145	HDAC7 (ENSPPYG00000004446) #18	ENSPPYG00000034890 #19	RAPGEF3 (ENSPPYG00000038555) #20	ENDOU (ENSPPYG00000004442) #21	RPAP3 (ENSPPYG00000004441) #22	ENSPPYG00000031758	PCED1B (ENSPPYG00000004440) #23	SLC38A4 (ENSPPYG00000004438) #25	ENSPPYG00000004437	SLC38A2 (ENSPPYG00000004436) #26	SLC38A1 (ENSPPYG00000004435) #27	SCAF11 (ENSPPYG00000004434) #28	ARID2 (ENSPPYG00000004433) #29	ANO6 (ENSPPYG00000004432) #30	ENSPPYG00000036612	DBX2 (ENSPPYG00000004431) #31	NELL2 (ENSPPYG00000004430) #32	TMEM117 (ENSPPYG00000004429) #33	TWF1 (ENSPPYG00000004428) #34	IRAK4 (ENSPPYG00000004427) #35
Gibbon	MODERN SPECIES	23	ZNF641 (ENSNLEG00000017881) #8	ENSNLEG00000017883 #10	ENSNLEG00000017884	CCDC184 (ENSNLEG00000019275) #11	ENSNLEG00000028267	ASB8 (ENSNLEG00000017885) #12	PFKM (ENSNLEG00000017887) #13	SENP1 (ENSNLEG00000017891) #14	COL2A1 (ENSNLEG00000017893) #15	TMEM106C (ENSNLEG00000017898) #16	VDR (ENSNLEG00000017900) #17	HDAC7 (ENSNLEG00000017902) #18	SLC48A1 (ENSNLEG00000017904) #19	RAPGEF3 (ENSNLEG00000017905) #20	ENDOU (ENSNLEG00000017907) #21	RPAP3 (ENSNLEG00000017909) #22	PCED1B (ENSNLEG00000005075) #23	AMIGO2 (ENSNLEG00000033325) #24	PLSCR4 (ENSNLEG00000005048)	PLOD2 (ENSNLEG00000005034)	ENSNLEG00000033610	ENSNLEG00000027728	DIPK2A (ENSNLEG00000005030)	SLC9A9 (ENSNLEG00000004981)	ENSNLEG00000005029	CHST2 (ENSNLEG00000004976)	U2SURP (ENSNLEG00000004915)	PCOLCE2 (ENSNLEG00000004883)	ENSNLEG00000035106	TRPC1 (ENSNLEG00000004868)	PLS1 (ENSNLEG00000004830)
Cercopithecidae	ANCESTRAL SPECIES	3	ENSGT01100000263574.a #10	ENSGT00910000147030	ENSGT00390000002978 #11	ENSGT00950000183070.a.b.g.b.a.d	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT01050000248304	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00910000147692	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36
Cercopithecinae	ANCESTRAL SPECIES	7	ENSGT00390000002978 #11	ENSGT00950000183070.a.b.g.b.a.d	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.e.a ##14	ENSGT00390000013208.v	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT01050000248304	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00530000063516.a.a.c.a
Cercopithecinae_a	ANCESTRAL SPECIES	7	ENSGT00730000111596	ENSGT00390000002978 #11	ENSGT00950000183070.a.b.g.b.a.d	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00390000013208.v	ENSGT00940000155489.b.f.a #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT01050000248304	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00530000063516.a.a.c.a
Macaca	ANCESTRAL SPECIES	6	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT00390000002978 #11	ENSGT00950000183070.a.b.g.b.a.d	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00390000013208.v	ENSGT00940000155489.b.f.a #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00440000034918.q.a.a.b.b.b	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Pig-tailed macaque	MODERN SPECIES	443	GYG1 (ENSMNEG00000029032)	HLTF (ENSMNEG00000032097)	HPS3 (ENSMNEG00000030748)	ENSMNEG00000036139	CP (ENSMNEG00000044426)	ENSMNEG00000029954	TM4SF18 (ENSMNEG00000036327)	ENSMNEG00000044306 #14	COL2A1 (ENSMNEG00000034245) #15	TMEM106C (ENSMNEG00000032962) #16	VDR (ENSMNEG00000029469) #17	HDAC7 (ENSMNEG00000038434) #18	SLC48A1 (ENSMNEG00000010205) #19	RAPGEF3 (ENSMNEG00000007257) #20	ENDOU (ENSMNEG00000038748) #21	RPAP3 (ENSMNEG00000028621) #22	ENSMNEG00000039988	ENSMNEG00000031900	AMIGO2 (ENSMNEG00000024121) #24	SLC38A4 (ENSMNEG00000038441) #25	SLC38A2 (ENSMNEG00000029727) #26	SLC38A1 (ENSMNEG00000034047) #27	SCAF11 (ENSMNEG00000028520) #28	ARID2 (ENSMNEG00000033155) #29	ANO6 (ENSMNEG00000033052) #30	ENSMNEG00000013932	DBX2 (ENSMNEG00000033268) #31	NELL2 (ENSMNEG00000033830) #32	ENSMNEG00000042504	TMEM117 (ENSMNEG00000044327) #33	ENSMNEG00000029948
Macaca_a	ANCESTRAL SPECIES	6	ENSGT00390000014843	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00390000013208.v	ENSGT00940000155489.b.f.a #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Rhesus	MODERN SPECIES	2	ENSMMUG00000048875	ZNF641 (ENSMMUG00000014484) #8	H1-7 (ENSMMUG00000051724)	CCDC184 (ENSMMUG00000052412) #11	ASB8 (ENSMMUG00000002048) #12	PFKM (ENSMMUG00000002045) #13	ENSMMUG00000055133	SENP1 (ENSMMUG00000020125) #14	COL2A1 (ENSMMUG00000011444) #15	TMEM106C (ENSMMUG00000011441) #16	VDR (ENSMMUG00000006727) #17	HDAC7 (ENSMMUG00000021655) #18	SLC48A1 (ENSMMUG00000049514) #19	RAPGEF3 (ENSMMUG00000000477) #20	ENDOU (ENSMMUG00000018399) #21	RPAP3 (ENSMMUG00000007482) #22	ENSMMUG00000049854	PCED1B (ENSMMUG00000002203) #23	AMIGO2 (ENSMMUG00000012458) #24	SLC38A4 (ENSMMUG00000012331) #25	ENSMMUG00000065020	SLC38A2 (ENSMMUG00000022359) #26	SLC38A1 (ENSMMUG00000011999) #27	SCAF11 (ENSMMUG00000023791) #28	ARID2 (ENSMMUG00000015962) #29	ENSMMUG00000030923	ANO6 (ENSMMUG00000011811) #30	DBX2 (ENSMMUG00000052030) #31	NELL2 (ENSMMUG00000017279) #32	ENSMMUG00000041539	ENSMMUG00000058178
Crab-eating macaque	MODERN SPECIES	2	ENSMFAG00000049420	ENSMFAG00000042792 #8	H1-7 (ENSMFAG00000053048)	CCDC184 (ENSMFAG00000058649) #11	ASB8 (ENSMFAG00000002179) #12	PFKM (ENSMFAG00000037825) #13	ENSMFAG00000059157	ENSMFAG00000001564 #14	COL2A1 (ENSMFAG00000031247) #15	TMEM106C (ENSMFAG00000036419) #16	VDR (ENSMFAG00000040856) #17	HDAC7 (ENSMFAG00000044177) #18	SLC48A1 (ENSMFAG00000038766) #19	RAPGEF3 (ENSMFAG00000034209) #20	ENDOU (ENSMFAG00000045723) #21	RPAP3 (ENSMFAG00000030749) #22	ENSMFAG00000048905	PCED1B (ENSMFAG00000060421) #23	ENSMFAG00000059864	AMIGO2 (ENSMFAG00000036236) #24	SLC38A4 (ENSMFAG00000000933) #25	SLC38A2 (ENSMFAG00000037266) #26	SLC38A1 (ENSMFAG00000009753) #27	ENSMFAG00000062309	SCAF11 (ENSMFAG00000036690) #28	ARID2 (ENSMFAG00000038693) #29	ENSMFAG00000042637	ANO6 (ENSMFAG00000037126) #30	ENSMFAG00000027683	DBX2 (ENSMFAG00000039639) #31	ENSMFAG00000062220
Cercopithecinae_b	ANCESTRAL SPECIES	2	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00390000013208.v	ENSGT00940000155489.b.f.a #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT01050000248304	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00530000063516.a.a.c.a
Olive baboon	MODERN SPECIES	120													ENSPANG00000045678	ENSPANG00000006686 #20	ENDOU (ENSPANG00000009965) #21	RPAP3 (ENSPANG00000004603) #22
Cercopithecinae_d	ANCESTRAL SPECIES	3	ENSGT00940000162121 #8	ENSGT00390000004856.w.a.a.b.a.a.b	ENSGT00940000157911.b.a	ENSGT00910000147030	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f.a #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00940000153147.m.b
Sooty mangabey	MODERN SPECIES	571	ENSCATG00000041332	ZNF641 (ENSCATG00000043835) #8	ENSCATG00000021099	ENSCATG00000038030	ENSCATG00000032527	ASB8 (ENSCATG00000030950) #12	PFKM (ENSCATG00000027401) #13	SENP1 (ENSCATG00000043133) #14	COL2A1 (ENSCATG00000043631) #15	TMEM106C (ENSCATG00000036809) #16	VDR (ENSCATG00000028364) #17	HDAC7 (ENSCATG00000043857) #18	SLC48A1 (ENSCATG00000021181) #19	RAPGEF3 (ENSCATG00000029872) #20	ENDOU (ENSCATG00000044022) #21	RPAP3 (ENSCATG00000030195) #22	AMIGO2 (ENSCATG00000019946) #24	SLC38A4 (ENSCATG00000014279) #25	SLC38A2 (ENSCATG00000021173) #26	SLC38A1 (ENSCATG00000031471) #27	SCAF11 (ENSCATG00000032446) #28	ARID2 (ENSCATG00000040163) #29	ANO6 (ENSCATG00000032834) #30	ENSCATG00000022024	DBX2 (ENSCATG00000032519) #31	NELL2 (ENSCATG00000018996) #32	ENSCATG00000045141
Drill	MODERN SPECIES	959	ENSMLEG00000007600	ENSMLEG00000035066	ENSMLEG00000039549	ENSMLEG00000040313	CCDC184 (ENSMLEG00000004337) #11	ASB8 (ENSMLEG00000035600) #12	PFKM (ENSMLEG00000013288) #13	SENP1 (ENSMLEG00000042606) #14	COL2A1 (ENSMLEG00000040212) #15	TMEM106C (ENSMLEG00000040987) #16	VDR (ENSMLEG00000039437) #17	HDAC7 (ENSMLEG00000030810) #18	SLC48A1 (ENSMLEG00000001439) #19	RAPGEF3 (ENSMLEG00000041624) #20	ENDOU (ENSMLEG00000042142) #21	RPAP3 (ENSMLEG00000035944) #22
Vervet Monkey	MODERN SPECIES	2	H1-7 (ENSCSAG00000019251)	ENSCSAG00000006285	CCDC184 (ENSCSAG00000019250) #11	ENSCSAG00000006302	ASB8 (ENSCSAG00000006304) #12	PFKM (ENSCSAG00000006315) #13	ENSCSAG00000006320 ##14	ENSCSAG00000019249	COL2A1 (ENSCSAG00000006460) #15	TMEM106C (ENSCSAG00000006569) #16	VDR (ENSCSAG00000006576) #17	HDAC7 (ENSCSAG00000006584) #18	SLC48A1 (ENSCSAG00000006591) #19	RAPGEF3 (ENSCSAG00000006671) #20	ENDOU (ENSCSAG00000006695) #21	RPAP3 (ENSCSAG00000006707) #22	PCED1B (ENSCSAG00000019248) #23	AMIGO2 (ENSCSAG00000019247) #24	SLC38A4 (ENSCSAG00000006718) #25	SLC38A2 (ENSCSAG00000006724) #26	SLC38A1 (ENSCSAG00000006731) #27	SCAF11 (ENSCSAG00000006741) #28	ARID2 (ENSCSAG00000006749) #29	ANO6 (ENSCSAG00000006758) #30	ENSCSAG00000006765 #31	NELL2 (ENSCSAG00000006771) #32	TMEM117 (ENSCSAG00000006777) #33	TWF1 (ENSCSAG00000006781) #34	IRAK4 (ENSCSAG00000006810) #35	PUS7L (ENSCSAG00000006827) #36	ADAMTS20 (ENSCSAG00000006963) #37
Rhinopithecus	ANCESTRAL SPECIES	4	ENSGT00940000162121 #8	ENSGT01100000263574.a #10	ENSGT00910000147030	ENSGT00390000002978 #11	ENSGT00950000183070.a.b.g.b.a.d	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00910000147692	ENSGT00940000160716 #27
Golden snub-nosed monkey	MODERN SPECIES	2905	OR10AD1 (ENSRROG00000036758) #10	ENSRROG00000035893	CCDC184 (ENSRROG00000000771) #11	ENSRROG00000037143	ASB8 (ENSRROG00000033794) #12	PFKM (ENSRROG00000035567) #13	ENSRROG00000033054	SENP1 (ENSRROG00000041591) #14	COL2A1 (ENSRROG00000020874) #15	TMEM106C (ENSRROG00000021591) #16	VDR (ENSRROG00000038196) #17	HDAC7 (ENSRROG00000006265) #18	SLC48A1 (ENSRROG00000036870) #19	RAPGEF3 (ENSRROG00000031521) #20	ENDOU (ENSRROG00000037068) #21	RPAP3 (ENSRROG00000028195) #22	AMIGO2 (ENSRROG00000016845) #24
Black snub-nosed monkey	MODERN SPECIES	1629		ENSRBIG00000038245	OR10AD1 (ENSRBIG00000028936) #10	ENSRBIG00000032502	CCDC184 (ENSRBIG00000020435) #11	ASB8 (ENSRBIG00000043401) #12	ENSRBIG00000038885 #13	SENP1 (ENSRBIG00000041356) #14	COL2A1 (ENSRBIG00000008860) #15	TMEM106C (ENSRBIG00000039284) #16	VDR (ENSRBIG00000032268) #17	HDAC7 (ENSRBIG00000041373) #18	SLC48A1 (ENSRBIG00000037103) #19	ENSRBIG00000033157	ENDOU (ENSRBIG00000017516) #21	RPAP3 (ENSRBIG00000032745) #22
Platyrrhini	ANCESTRAL SPECIES	44				ENSGT01100000263574.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00930000150941.x.a.b.b
Cebidae	ANCESTRAL SPECIES	2	ENSGT00510000048519	ENSGT00940000156628	ENSGT01080000257336.b.e.b.a.a	ENSGT01080000257336.b.e.b.a.b.a.e.a	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00930000150941.x.a.b.b
Marmoset	MODERN SPECIES	21	KLRG1 (ENSCJAG00000018697)	CLEC2B (ENSCJAG00000018605)	ENSCJAG00000086271	ENSCJAG00000059386	KLRF1 (ENSCJAG00000018584)	ENSCJAG00000087106	ENSCJAG00000077800	CD69 (ENSCJAG00000018576)	ENSCJAG00000067364	ENSCJAG00000011120	ENSCJAG00000076201	ENSCJAG00000016491	ENSCJAG00000062635	ENSCJAG00000078523	ENSCJAG00000044206 #21	RPAP3 (ENSCJAG00000012838) #22	PCED1B (ENSCJAG00000012864) #23	ENSCJAG00000021340	AMIGO2 (ENSCJAG00000012873) #24	ENSCJAG00000076367	SLC38A4 (ENSCJAG00000012877) #25	SLC38A2 (ENSCJAG00000012956) #26	SLC38A1 (ENSCJAG00000012989) #27	SCAF11 (ENSCJAG00000013077) #28	ARID2 (ENSCJAG00000013099) #29	ENSCJAG00000081349	ANO6 (ENSCJAG00000013160) #30	DBX2 (ENSCJAG00000013213) #31	NELL2 (ENSCJAG00000013215) #32	ENSCJAG00000086234	TMEM117 (ENSCJAG00000013333) #33
Cebidae_a	ANCESTRAL SPECIES	5	ENSGT00940000158921.h	ENSGT00940000156628	ENSGT01080000257336.b.e.b.a.a	ENSGT01080000257336.b.e.b.a.b.a.e.a	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00930000150941.x.a.b.b
Bolivian squirrel monkey	MODERN SPECIES	187					CCDC184 (ENSSBOG00000016554) #11	ASB8 (ENSSBOG00000011994) #12	PFKM (ENSSBOG00000030719) #13	SENP1 (ENSSBOG00000026125) #14	COL2A1 (ENSSBOG00000034975) #15	TMEM106C (ENSSBOG00000025241) #16	VDR (ENSSBOG00000021289) #17	HDAC7 (ENSSBOG00000029712) #18	SLC48A1 (ENSSBOG00000023581) #19	RAPGEF3 (ENSSBOG00000028988) #20	ENDOU (ENSSBOG00000034410) #21	RPAP3 (ENSSBOG00000027611) #22	PCED1B (ENSSBOG00000029092) #23	AMIGO2 (ENSSBOG00000005479) #24	SLC38A4 (ENSSBOG00000031640) #25	ENSSBOG00000021908	ENSSBOG00000036405	SLC38A2 (ENSSBOG00000028246) #26	SLC38A1 (ENSSBOG00000025476) #27	SCAF11 (ENSSBOG00000030831) #28	ARID2 (ENSSBOG00000029953) #29	ENSSBOG00000027448	ANO6 (ENSSBOG00000022255) #30	DBX2 (ENSSBOG00000031594) #31	NELL2 (ENSSBOG00000024649) #32	TMEM117 (ENSSBOG00000021944) #33	TWF1 (ENSSBOG00000032310) #34
Capuchin	MODERN SPECIES	2	PDE3A (ENSCCAG00000026837)	ENSCCAG00000030961	SLCO1C1 (ENSCCAG00000034748)	SLCO1B3 (ENSCCAG00000034973)	CCDC184 (ENSCCAG00000017226) #11	ASB8 (ENSCCAG00000035163) #12	PFKM (ENSCCAG00000026385) #13	SENP1 (ENSCCAG00000036881) #14	COL2A1 (ENSCCAG00000036418) #15	TMEM106C (ENSCCAG00000020884) #16	VDR (ENSCCAG00000037149) #17	HDAC7 (ENSCCAG00000035250) #18	SLC48A1 (ENSCCAG00000021348) #19	RAPGEF3 (ENSCCAG00000023046) #20	ENDOU (ENSCCAG00000034144) #21	RPAP3 (ENSCCAG00000025153) #22	AMIGO2 (ENSCCAG00000020409) #24	SLC38A4 (ENSCCAG00000029655) #25	SLC38A2 (ENSCCAG00000018922) #26	SLC38A1 (ENSCCAG00000019617) #27	SCAF11 (ENSCCAG00000030539) #28	ARID2 (ENSCCAG00000029546) #29	ANO6 (ENSCCAG00000028730) #30	DBX2 (ENSCCAG00000030302) #31	NELL2 (ENSCCAG00000033646) #32	TMEM117 (ENSCCAG00000010620) #33	TWF1 (ENSCCAG00000014429) #34	IRAK4 (ENSCCAG00000026124) #35	PUS7L (ENSCCAG00000030607) #36	ENSCCAG00000024616	ADAMTS20 (ENSCCAG00000023155) #37
Mas night monkey	MODERN SPECIES	997				OR10AD1 (ENSANAG00000035739) #10	CCDC184 (ENSANAG00000014439) #11	ASB8 (ENSANAG00000037107) #12	PFKM (ENSANAG00000027931) #13	SENP1 (ENSANAG00000022189) #14	COL2A1 (ENSANAG00000000277) #15	TMEM106C (ENSANAG00000024004) #16	VDR (ENSANAG00000028434) #17	HDAC7 (ENSANAG00000027544) #18	SLC48A1 (ENSANAG00000029553) #19	RAPGEF3 (ENSANAG00000022364) #20	ENDOU (ENSANAG00000038259) #21	RPAP3 (ENSANAG00000023596) #22	PCED1B (ENSANAG00000024364) #23	AMIGO2 (ENSANAG00000003392) #24	SLC38A4 (ENSANAG00000026601) #25	SLC38A2 (ENSANAG00000022032) #26	ENSANAG00000037911	SLC38A1 (ENSANAG00000026526) #27	SCAF11 (ENSANAG00000033295) #28	ARID2 (ENSANAG00000035486) #29	ANO6 (ENSANAG00000037050) #30	DBX2 (ENSANAG00000020608) #31	NELL2 (ENSANAG00000036189) #32	TMEM117 (ENSANAG00000021717) #33	TWF1 (ENSANAG00000027037) #34	IRAK4 (ENSANAG00000020711) #35	PUS7L (ENSANAG00000032542) #36
Tarsier	MODERN SPECIES	3354											HDAC7 (ENSTSYG00000033525) #18	SLC48A1 (ENSTSYG00000034171) #19	ENSTSYG00000029114	RAPGEF3 (ENSTSYG00000006424) #20	ENDOU (ENSTSYG00000001211) #21	RPAP3 (ENSTSYG00000006882) #22
Strepsirrhini	ANCESTRAL SPECIES	3	ENSGT00940000162202.B ##7	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138.m #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Lemuriformes	ANCESTRAL SPECIES	1	ENSGT00940000162202.B ##7	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138.m #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Lemuriformes_a	ANCESTRAL SPECIES	8	ENSGT00940000162202.B ##7	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138.m #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Coquerels sifaka	MODERN SPECIES	139		LALBA (ENSPCOG00000018633)	C12orf54 (ENSPCOG00000019382)	ZNF641 (ENSPCOG00000001947) #8	OR10AD1 (ENSPCOG00000015450) #10	ASB8 (ENSPCOG00000023868) #12	PFKM (ENSPCOG00000023069) #13	SENP1 (ENSPCOG00000019819) #14	COL2A1 (ENSPCOG00000020574) #15	TMEM106C (ENSPCOG00000004592) #16	VDR (ENSPCOG00000018013) #17	HDAC7 (ENSPCOG00000006648) #18	SLC48A1 (ENSPCOG00000016515) #19	RAPGEF3 (ENSPCOG00000014176) #20	ENDOU (ENSPCOG00000017245) #21	RPAP3 (ENSPCOG00000025666) #22	PCED1B (ENSPCOG00000015507) #23	AMIGO2 (ENSPCOG00000026569) #24	SLC38A4 (ENSPCOG00000019237) #25	SLC38A2 (ENSPCOG00000012829) #26	SLC38A1 (ENSPCOG00000013491) #27	SCAF11 (ENSPCOG00000018985) #28	ARID2 (ENSPCOG00000009815) #29	ANO6 (ENSPCOG00000018108) #30	DBX2 (ENSPCOG00000017044) #31	NELL2 (ENSPCOG00000015170) #32	TMEM117 (ENSPCOG00000025035) #33	TWF1 (ENSPCOG00000015800) #34	IRAK4 (ENSPCOG00000026905) #35	PUS7L (ENSPCOG00000025211) #36	ENSPCOG00000010283
Greater bamboo lemur	MODERN SPECIES	157	ZNF641 (ENSPSMG00000006343) #8	ENSPSMG00000006354	OR10AD1 (ENSPSMG00000006355) #10	CCDC184 (ENSPSMG00000006359) #11	ASB8 (ENSPSMG00000006381) #12	PFKM (ENSPSMG00000006723) #13	SENP1 (ENSPSMG00000007328) #14	ENSPSMG00000007348	COL2A1 (ENSPSMG00000007410) #15	TMEM106C (ENSPSMG00000007452) #16	VDR (ENSPSMG00000007475) #17	HDAC7 (ENSPSMG00000007768) #18	SLC48A1 (ENSPSMG00000007842) #19	RAPGEF3 (ENSPSMG00000008231) #20	ENDOU (ENSPSMG00000008548) #21	RPAP3 (ENSPSMG00000008653) #22	PCED1B (ENSPSMG00000008684) #23	AMIGO2 (ENSPSMG00000008690) #24	SLC38A4 (ENSPSMG00000008717) #25	SLC38A2 (ENSPSMG00000008822) #26	SLC38A1 (ENSPSMG00000008950) #27	SCAF11 (ENSPSMG00000009136) #28	ARID2 (ENSPSMG00000009214) #29
Mouse lemur	MODERN SPECIES	29	KANSL2 (ENSMICG00000005369)	LALBA (ENSMICG00000027875)	C12orf54 (ENSMICG00000044033)	ZNF641 (ENSMICG00000007360) #8	ENSMICG00000043548	ASB8 (ENSMICG00000036562) #12	ENSMICG00000009077 #13	SENP1 (ENSMICG00000009067) #14	COL2A1 (ENSMICG00000009035) #15	TMEM106C (ENSMICG00000001808) #16	VDR (ENSMICG00000009017) #17	HDAC7 (ENSMICG00000008981) #18	SLC48A1 (ENSMICG00000040477) #19	RAPGEF3 (ENSMICG00000008955) #20	ENDOU (ENSMICG00000008940) #21	RPAP3 (ENSMICG00000008923) #22	PCED1B (ENSMICG00000033652) #23	AMIGO2 (ENSMICG00000016826) #24	SLC38A4 (ENSMICG00000037271) #25	SLC38A2 (ENSMICG00000012909) #26	SLC38A1 (ENSMICG00000012891) #27	SCAF11 (ENSMICG00000032882) #28	ENSMICG00000027443	ARID2 (ENSMICG00000001487) #29	ENSMICG00000044858 #29	ANO6 (ENSMICG00000004893) #30	DBX2 (ENSMICG00000031036) #31	NELL2 (ENSMICG00000007752) #32	TMEM117 (ENSMICG00000007749) #33	TWF1 (ENSMICG00000032658) #34	IRAK4 (ENSMICG00000007741) #35
Bushbaby	MODERN SPECIES	185	ENSOGAG00000034537 ##7	ZNF641 (ENSOGAG00000005519) #8	H1-7 (ENSOGAG00000008945)	OR10AD1 (ENSOGAG00000005517) #10	CCDC184 (ENSOGAG00000030121) #11	ASB8 (ENSOGAG00000005509) #12	PFKM (ENSOGAG00000005501) #13	SENP1 (ENSOGAG00000005497) #14	COL2A1 (ENSOGAG00000005487) #15	TMEM106C (ENSOGAG00000005484) #16	VDR (ENSOGAG00000005480) #17	HDAC7 (ENSOGAG00000005471) #18	SLC48A1 (ENSOGAG00000032164) #19	RAPGEF3 (ENSOGAG00000005462) #20	ENDOU (ENSOGAG00000005458) #21	RPAP3 (ENSOGAG00000005454) #22	PCED1B (ENSOGAG00000003352) #23	AMIGO2 (ENSOGAG00000003853) #24	SLC38A4 (ENSOGAG00000007943) #25	SLC38A2 (ENSOGAG00000006475) #26	SLC38A1 (ENSOGAG00000006469) #27	SCAF11 (ENSOGAG00000026319) #28	ENSOGAG00000024978	ARID2 (ENSOGAG00000024418) #29	ANO6 (ENSOGAG00000015593) #30	DBX2 (ENSOGAG00000008999) #31	NELL2 (ENSOGAG00000016946) #32	TMEM117 (ENSOGAG00000016942) #33	TWF1 (ENSOGAG00000007525) #34	IRAK4 (ENSOGAG00000007522) #35	PUS7L (ENSOGAG00000028696) #36
Laurasiatheria	ANCESTRAL SPECIES	6	ENSGT00940000162202.B ##7	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00960000189677	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36
Laurasiatheria_a	ANCESTRAL SPECIES	6	ENSGT00940000165904.a	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00960000189677	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36
Artiodactyla	ANCESTRAL SPECIES	6	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a.m #10	ENSGT01100000263574.a.n #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Artiodactyla_a	ANCESTRAL SPECIES	5	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a.n #10	ENSGT01100000263574.a.m #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Artiodactyla_b	ANCESTRAL SPECIES	5	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a.n #10	ENSGT01100000263574.a.m #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Cetacea	ANCESTRAL SPECIES	8	ENSGT00940000162202.B ##7	ENSGT00940000165904.b	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Odontoceti	ANCESTRAL SPECIES	7	ENSGT00940000162202.A ##7	ENSGT00940000162202.B ##7	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Odontoceti_a	ANCESTRAL SPECIES	6	ENSGT00940000162202.A ##7	ENSGT00940000162202.B ##7	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Odontoceti_b	ANCESTRAL SPECIES	7	ENSGT00940000162202.A ##7	ENSGT00940000162202.B ##7	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000153771.B.f.b	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36
Monodontidae	ANCESTRAL SPECIES	6	ENSGT00940000162202.A ##7	ENSGT00940000162202.B ##7	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000153771.B.f.b	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36
Beluga whale	MODERN SPECIES	39	ENSDLEG00000005879 ##7	ZNF641 (ENSDLEG00000005908) #8	ENSDLEG00000005917	CCDC184 (ENSDLEG00000005920) #11	ASB8 (ENSDLEG00000005926) #12	PFKM (ENSDLEG00000005929) #13	SENP1 (ENSDLEG00000005948) #14	TMEM106C (ENSDLEG00000005967)	VDR (ENSDLEG00000005983) #17	HDAC7 (ENSDLEG00000005998) #18	SLC48A1 (ENSDLEG00000006040) #19	ENSDLEG00000006049 #20	ENSDLEG00000006058	ENSDLEG00000006065 #20	ENDOU (ENSDLEG00000006074) #21	RPAP3 (ENSDLEG00000006087) #22	PCED1B (ENSDLEG00000006095) #23	AMIGO2 (ENSDLEG00000006104) #24	SLC38A4 (ENSDLEG00000006112) #25	SLC38A2 (ENSDLEG00000006121) #26	ENSDLEG00000006136	SLC38A1 (ENSDLEG00000006149) #27	SCAF11 (ENSDLEG00000006179) #28	ARID2 (ENSDLEG00000006202) #29	ANO6 (ENSDLEG00000006231) #30	DBX2 (ENSDLEG00000006288) #31	NELL2 (ENSDLEG00000006297) #32	TMEM117 (ENSDLEG00000006316) #33	TWF1 (ENSDLEG00000006326) #34	IRAK4 (ENSDLEG00000006336) #35	PUS7L (ENSDLEG00000006346) #36
Narwhal	MODERN SPECIES	313	ENSMMNG00015021133 ##7	ENSMMNG00015021120 ##7	ZNF641 (ENSMMNG00015021069) #8	ENSMMNG00015021040	CCDC184 (ENSMMNG00015021019) #11	ASB8 (ENSMMNG00015020972) #12	PFKM (ENSMMNG00015020844) #13	SENP1 (ENSMMNG00015020735) #14	COL2A1 (ENSMMNG00015020553) #15	TMEM106C (ENSMMNG00015020428) #16	VDR (ENSMMNG00015020345) #17	HDAC7 (ENSMMNG00015020264) #18	SLC48A1 (ENSMMNG00015020233) #19	RAPGEF3 (ENSMMNG00015020182) #20	ENDOU (ENSMMNG00015020139) #21	RPAP3 (ENSMMNG00015020088) #22	PCED1B (ENSMMNG00015020062) #23	AMIGO2 (ENSMMNG00015020049) #24	SLC38A4 (ENSMMNG00015020012) #25	SLC38A2 (ENSMMNG00015019933) #26	ENSMMNG00015019874	ENSMMNG00015019850	SLC38A1 (ENSMMNG00015019812) #27	SCAF11 (ENSMMNG00015019745) #28	ARID2 (ENSMMNG00015019688) #29	ANO6 (ENSMMNG00015019497) #30	DBX2 (ENSMMNG00015019435) #31	NELL2 (ENSMMNG00015019098) #32	TMEM117 (ENSMMNG00015018953) #33	TWF1 (ENSMMNG00015018823) #34	IRAK4 (ENSMMNG00015018774) #35
Vaquita	MODERN SPECIES	1	ENSPSNG00000013321 ##7	ENSPSNG00000013345 ##7	ZNF641 (ENSPSNG00000013419) #8	ENSPSNG00000013590	CCDC184 (ENSPSNG00000013611) #11	ASB8 (ENSPSNG00000013660) #12	PFKM (ENSPSNG00000013971) #13	SENP1 (ENSPSNG00000014150) #14	COL2A1 (ENSPSNG00000014320) #15	ENSPSNG00000015715	VDR (ENSPSNG00000015833) #17	HDAC7 (ENSPSNG00000016072) #18	SLC48A1 (ENSPSNG00000016574) #19	RAPGEF3 (ENSPSNG00000016690) #20	ENDOU (ENSPSNG00000017476) #21	RPAP3 (ENSPSNG00000017591) #22	PCED1B (ENSPSNG00000017685) #23	AMIGO2 (ENSPSNG00000017698) #24	SLC38A4 (ENSPSNG00000017720) #25	SLC38A2 (ENSPSNG00000017866) #26	ENSPSNG00000017924	SLC38A1 (ENSPSNG00000017977) #27	SCAF11 (ENSPSNG00000018057) #28	ARID2 (ENSPSNG00000018161) #29	ANO6 (ENSPSNG00000018300) #30	DBX2 (ENSPSNG00000018605) #31	NELL2 (ENSPSNG00000018711) #32	TMEM117 (ENSPSNG00000019069) #33	ENSPSNG00000019127	TWF1 (ENSPSNG00000019155) #34	IRAK4 (ENSPSNG00000019248) #35
Dolphin	MODERN SPECIES	778												VDR (ENSTTRG00000012578) #17	HDAC7 (ENSTTRG00000012577) #18	RAPGEF3 (ENSTTRG00000012575) #20	ENDOU (ENSTTRG00000012573) #21	RPAP3 (ENSTTRG00000012568) #22
Sperm whale	MODERN SPECIES	17	CCNT1 (ENSPCTG00005010029)	KANSL2 (ENSPCTG00005010081)	LALBA (ENSPCTG00005010137)	OR10AD1 (ENSPCTG00005010253) #10	ZNF641 (ENSPCTG00005010300) #8	H1-7 (ENSPCTG00005010454)	CCDC184 (ENSPCTG00005010471) #11	ASB8 (ENSPCTG00005010504) #12	PFKM (ENSPCTG00005010671) #13	SENP1 (ENSPCTG00005011241) #14	COL2A1 (ENSPCTG00005011414) #15	TMEM106C (ENSPCTG00005012469) #16	ENSPCTG00005012530 #17	ENSPCTG00005012582 #20	ENDOU (ENSPCTG00005012635) #21	RPAP3 (ENSPCTG00005012982) #22	PCED1B (ENSPCTG00005013140) #23	AMIGO2 (ENSPCTG00005013162) #24	SLC38A4 (ENSPCTG00005013196) #25	SLC38A2 (ENSPCTG00005013434) #26	SLC38A1 (ENSPCTG00005013721) #27	SCAF11 (ENSPCTG00005013873) #28	ARID2 (ENSPCTG00005014080) #29	ANO6 (ENSPCTG00005014283) #30	DBX2 (ENSPCTG00005015501) #31	NELL2 (ENSPCTG00005015611) #32	TMEM117 (ENSPCTG00005016308) #33	TWF1 (ENSPCTG00005016400) #34	IRAK4 (ENSPCTG00005016513) #35	PUS7L (ENSPCTG00005016614) #36	ADAMTS20 (ENSPCTG00005016684) #37
Blue whale	MODERN SPECIES	1	ENSBMSG00010015426	ZNF641 (ENSBMSG00010015344) #8	H1-7 (ENSBMSG00010015314)	CCDC184 (ENSBMSG00010015284) #11	ASB8 (ENSBMSG00010015216) #12	PFKM (ENSBMSG00010014688) #13	SENP1 (ENSBMSG00010014499) #14	ENSBMSG00010014464	COL2A1 (ENSBMSG00010013975) #15	ENSBMSG00010013800	VDR (ENSBMSG00010013757) #17	HDAC7 (ENSBMSG00010013664) #18	SLC48A1 (ENSBMSG00010013623) #19	RAPGEF3 (ENSBMSG00010013532) #20	ENDOU (ENSBMSG00010013477) #21	RPAP3 (ENSBMSG00010013445) #22	PCED1B (ENSBMSG00010016068) #23	AMIGO2 (ENSBMSG00010016060) #24	SLC38A4 (ENSBMSG00010015997) #25	SLC38A2 (ENSBMSG00010015940) #26	SLC38A1 (ENSBMSG00010015910) #27	SCAF11 (ENSBMSG00010015827) #28	ARID2 (ENSBMSG00010015611) #29	ENSBMSG00010015578	ANO6 (ENSBMSG00010015412) #30	DBX2 (ENSBMSG00010015363) #31	NELL2 (ENSBMSG00010015242) #32	TMEM117 (ENSBMSG00010015208) #33	TWF1 (ENSBMSG00010015134) #34	IRAK4 (ENSBMSG00010015083) #35	PUS7L (ENSBMSG00010015036) #36
Pecora	ANCESTRAL SPECIES	3	ENSGT00730000111596	ENSGT00940000156867.b	ENSGT01100000263574.a.m #10	ENSGT01100000263574.a.n #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Yarkand deer	MODERN SPECIES	22	ENSCHYG00000007543	ENSCHYG00000007556 #10	ENSCHYG00000007569 #10	ENSCHYG00000007573 #10	CCDC184 (ENSCHYG00000007582) #11	ASB8 (ENSCHYG00000007595) #12	PFKM (ENSCHYG00000007655) #13	SENP1 (ENSCHYG00000007824) #14	COL2A1 (ENSCHYG00000008041) #15	TMEM106C (ENSCHYG00000008675) #16	VDR (ENSCHYG00000008988) #17	HDAC7 (ENSCHYG00000009079) #18	SLC48A1 (ENSCHYG00000009816) #19	RAPGEF3 (ENSCHYG00000009893) #20	ENDOU (ENSCHYG00000010435) #21	RPAP3 (ENSCHYG00000010905) #22	PCED1B (ENSCHYG00000011150) #23	AMIGO2 (ENSCHYG00000011168) #24	SLC38A4 (ENSCHYG00000011229) #25	SLC38A2 (ENSCHYG00000011401) #26	SLC38A1 (ENSCHYG00000011653) #27	SCAF11 (ENSCHYG00000011867) #28	ARID2 (ENSCHYG00000012041) #29	ANO6 (ENSCHYG00000012341) #30	DBX2 (ENSCHYG00000013155) #31	NELL2 (ENSCHYG00000013283) #32	TMEM117 (ENSCHYG00000014294) #33	TWF1 (ENSCHYG00000014429) #34	IRAK4 (ENSCHYG00000014614) #35	ENSCHYG00000014747	PUS7L (ENSCHYG00000014775) #36
Percora_a	ANCESTRAL SPECIES	3	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a.n #10	ENSGT01100000263574.a.m #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Siberian musk deer	MODERN SPECIES	320	ZNF641 (ENSMMSG00000010279) #8	ENSMMSG00000010261	ENSMMSG00000010253	OR10AD1 (ENSMMSG00000010227) #10	CCDC184 (ENSMMSG00000010194) #11	ASB8 (ENSMMSG00000010152) #12	PFKM (ENSMMSG00000009771) #13	SENP1 (ENSMMSG00000009631) #14	COL2A1 (ENSMMSG00000009036) #15	TMEM106C (ENSMMSG00000008918) #16	VDR (ENSMMSG00000008846) #17	HDAC7 (ENSMMSG00000008049) #18	SLC48A1 (ENSMMSG00000007952) #19	RAPGEF3 (ENSMMSG00000007735) #20	ENDOU (ENSMMSG00000007532) #21	RPAP3 (ENSMMSG00000007438) #22	PCED1B (ENSMMSG00000007404) #23	SLC38A4 (ENSMMSG00000007377) #25	SLC38A2 (ENSMMSG00000007239) #26	SLC38A1 (ENSMMSG00000007143) #27	SCAF11 (ENSMMSG00000007056) #28	ARID2 (ENSMMSG00000006929) #29	ANO6 (ENSMMSG00000006529) #30	DBX2 (ENSMMSG00000006460) #31	NELL2 (ENSMMSG00000006093) #32	ENSMMSG00000006047	TMEM117 (ENSMMSG00000006017) #33	TWF1 (ENSMMSG00000005954) #34	IRAK4 (ENSMMSG00000005899) #35	PUS7L (ENSMMSG00000005841) #36	ADAMTS20 (ENSMMSG00000005666) #37
Bovidae	ANCESTRAL SPECIES	3	ENSGT00730000111596	ENSGT01100000263574.a.n #10	ENSGT00940000156867.b	ENSGT01100000263574.a.m #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000005254.i.a.b.e.b	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00390000009776.g.b	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35
Caprinae	ANCESTRAL SPECIES		ENSGT00940000162202.B ##7	ENSGT00940000162121 #8	ENSGT00940000156867.b	ENSGT01100000263574.a.m #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000005254.i.a.b.e.b	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00390000009776.g.b	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35
Goat	MODERN SPECIES	24	ZNF641 (ENSCHIG00000023090) #8	ENSCHIG00000009244	ENSCHIG00000009773 #10	ENSCHIG00000016938 #10	ENSCHIG00000012693 #10	ASB8 (ENSCHIG00000009981) #12	PFKM (ENSCHIG00000025820) #13	SENP1 (ENSCHIG00000021315) #14	COL2A1 (ENSCHIG00000009616) #15	TMEM106C (ENSCHIG00000025500) #16	VDR (ENSCHIG00000023586) #17	HDAC7 (ENSCHIG00000012597) #18	SLC48A1 (ENSCHIG00000012327) #19	RAPGEF3 (ENSCHIG00000010621) #20	ENSCHIG00000018045 #21	RPAP3 (ENSCHIG00000011915) #22	ENSCHIG00000013454	PCED1B (ENSCHIG00000003911) #23	AMIGO2 (ENSCHIG00000013658) #24	SLC38A4 (ENSCHIG00000016540) #25	SLC38A2 (ENSCHIG00000010302) #26	SLC38A1 (ENSCHIG00000001165) #27	ENSCHIG00000011733	SCAF11 (ENSCHIG00000016618) #28	ARID2 (ENSCHIG00000010883) #29	ANO6 (ENSCHIG00000000850) #30	ENSCHIG00000023172	DBX2 (ENSCHIG00000022598) #31	NELL2 (ENSCHIG00000010725) #32	TMEM117 (ENSCHIG00000007627) #33	TWF1 (ENSCHIG00000023302) #34
Rambouillet Sheep	MODERN SPECIES	19	C12orf54 (ENSOARG00020002119)	ENSOARG00020002130 ##7	ZNF641 (ENSOARG00020002143) #8	ENSOARG00020002155 #10	ENSOARG00020002162 #10	CCDC184 (ENSOARG00020002171) #11	ASB8 (ENSOARG00020002188) #12	PFKM (ENSOARG00020002234) #13	SENP1 (ENSOARG00020002321) #14	COL2A1 (ENSOARG00020002410) #15	TMEM106C (ENSOARG00020002677) #16	HDAC7 (ENSOARG00020002745) #18	SLC48A1 (ENSOARG00020002825) #19	RAPGEF3 (ENSOARG00020002846) #20	ENDOU (ENSOARG00020002938) #21	RPAP3 (ENSOARG00020003111) #22	ENSOARG00020003251	PCED1B (ENSOARG00020003260) #23	AMIGO2 (ENSOARG00020003270) #24	SLC38A4 (ENSOARG00020003294) #25	SLC38A2 (ENSOARG00020003471) #26	SLC38A1 (ENSOARG00020003616) #27	SCAF11 (ENSOARG00020003734) #28	ARID2 (ENSOARG00020003803) #29	ANO6 (ENSOARG00020003993) #30	ENSOARG00020004973	DBX2 (ENSOARG00020004994) #31	NELL2 (ENSOARG00020005041) #32	TMEM117 (ENSOARG00020005245) #33	TWF1 (ENSOARG00020005323) #34	IRAK4 (ENSOARG00020005397) #35
Bovinae	ANCESTRAL SPECIES	17	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a.n #10	ENSGT01100000263574.a.m #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000005254.j	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00390000009776.g.b	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35
Bos	ANCESTRAL SPECIES	2	ENSGT00730000111596	ENSGT01100000263574.a.n #10	ENSGT01100000263574.a.m #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.a.a.b.a.a.b	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000005254.j	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.a.b.b.a.a.a.a.b.a.a.b.a	ENSGT00940000155486 #26	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.a.a.a.a.a.b.a	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00390000009776.g.b	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33
Bos_a	ANCESTRAL SPECIES	3	ENSGT00940000156867.b	ENSGT01100000263574.a.m #10	ENSGT01100000263574.a.n #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.a.a.b.a.a.b	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000005254.j	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.a.b.b.a.a.a.a.b.a.a.b.a	ENSGT00940000155486 #26	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.a.a.a.a.a.b.a	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34
Wild yak	MODERN SPECIES	1778	ENSBMUG00000002248 #10	ENSBMUG00000002230 #10	ENSBMUG00000002218 #10	CCDC184 (ENSBMUG00000002197) #11	ASB8 (ENSBMUG00000002154) #12	PFKM (ENSBMUG00000002064) #13	SENP1 (ENSBMUG00000001912) #14	COL2A1 (ENSBMUG00000001852) #15	TMEM106C (ENSBMUG00000001676) #16	VDR (ENSBMUG00000001652) #17	HDAC7 (ENSBMUG00000001600) #18	SLC48A1 (ENSBMUG00000001456) #19	RAPGEF3 (ENSBMUG00000001404) #20	ENSBMUG00000000854	ENDOU (ENSBMUG00000000833) #21	RPAP3 (ENSBMUG00000000725) #22	ENSBMUG00000000628
Domestic yak	MODERN SPECIES	24	ZNF641 (ENSBGRG00000000300) #8	ENSBGRG00000000281	OR10AD1 (ENSBGRG00000025187) #10	CCDC184 (ENSBGRG00000025146) #11	ASB8 (ENSBGRG00000025109) #12	PFKM (ENSBGRG00000025004) #13	SENP1 (ENSBGRG00000024903) #14	COL2A1 (ENSBGRG00000024422) #15	TMEM106C (ENSBGRG00000024215) #16	VDR (ENSBGRG00000024120) #17	HDAC7 (ENSBGRG00000023703) #18	SLC48A1 (ENSBGRG00000023644) #19	ENSBGRG00000023626	RAPGEF3 (ENSBGRG00000023304) #20	ENDOU (ENSBGRG00000023048) #21	RPAP3 (ENSBGRG00000022895) #22	ENSBGRG00000022882	PCED1B (ENSBGRG00000022854) #23	AMIGO2 (ENSBGRG00000022846) #24	ENSBGRG00000022830	SLC38A4 (ENSBGRG00000022761) #25	ENSBGRG00000022751	SLC38A2 (ENSBGRG00000022600) #26	ENSBGRG00000022577	SLC38A1 (ENSBGRG00000022468) #27	SCAF11 (ENSBGRG00000022234) #28	ARID2 (ENSBGRG00000022144) #29	ANO6 (ENSBGRG00000021443) #30	DBX2 (ENSBGRG00000021373) #31	ENSBGRG00000021330	NELL2 (ENSBGRG00000019703) #32
Bos_b	ANCESTRAL SPECIES	4	ENSGT00730000111596	ENSGT01100000263574.a.n #10	ENSGT01100000263574.a.m #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.a.a.b.a.a.b	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000005254.j	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.a.b.b.a.a.a.a.b.a.a.b.a	ENSGT00940000155486 #26	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.a.a.a.a.a.b.a	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00390000009776.g.b	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00940000157981.b.cb.a.b
Hybrid Bos Indicus	MODERN SPECIES	24	ZNF641 (ENSBIXG00005021295) #8	ENSBIXG00005021302	ENSBIXG00005021327	CCDC184 (ENSBIXG00005021363) #11	ASB8 (ENSBIXG00005005446) #12	PFKM (ENSBIXG00005021906) #13	SENP1 (ENSBIXG00005022082) #14	COL2A1 (ENSBIXG00005022157) #15	TMEM106C (ENSBIXG00005022255) #16	VDR (ENSBIXG00005022293) #17	HDAC7 (ENSBIXG00005022454) #18	SLC48A1 (ENSBIXG00005022519) #19	ENSBIXG00005022526	RAPGEF3 (ENSBIXG00005022592) #20	ENDOU (ENSBIXG00005022710) #21	RPAP3 (ENSBIXG00005022769) #22	ENSBIXG00005022795	ENSBIXG00005022807	PCED1B (ENSBIXG00005022843) #23	AMIGO2 (ENSBIXG00005006671) #24	ENSBIXG00005022876	SLC38A4 (ENSBIXG00005023039) #25	ENSBIXG00005023082	SLC38A2 (ENSBIXG00005023118) #26	ENSBIXG00005023142	SLC38A1 (ENSBIXG00005006278) #27	SCAF11 (ENSBIXG00005003981) #28	ARID2 (ENSBIXG00005023392) #29	ENSBIXG00005023433	ANO6 (ENSBIXG00005023586) #30	DBX2 (ENSBIXG00005023629) #31
Cow	MODERN SPECIES	24	ENSBTAG00000053875	H1-7 (ENSBTAG00000048712)	ENSBTAG00000032429 #10	ENSBTAG00000032428 #10	CCDC184 (ENSBTAG00000002390) #11	ASB8 (ENSBTAG00000000289) #12	PFKM (ENSBTAG00000000286) #13	SENP1 (ENSBTAG00000012423) #14	COL2A1 (ENSBTAG00000013155) #15	TMEM106C (ENSBTAG00000000454) #16	VDR (ENSBTAG00000016414) #17	HDAC7 (ENSBTAG00000026819) #18	SLC48A1 (ENSBTAG00000032331) #19	RAPGEF3 (ENSBTAG00000006828) #20	ENDOU (ENSBTAG00000012275) #21	RPAP3 (ENSBTAG00000018690) #22	ENSBTAG00000038027	PCED1B (ENSBTAG00000011838) #23	AMIGO2 (ENSBTAG00000002025) #24	ENSBTAG00000050492	ENSBTAG00000052030	SLC38A4 (ENSBTAG00000014197) #25	SLC38A2 (ENSBTAG00000011105) #26	SLC38A1 (ENSBTAG00000000859) #27	SCAF11 (ENSBTAG00000001810) #28	ARID2 (ENSBTAG00000011087) #29	ANO6 (ENSBTAG00000002902) #30	ENSBTAG00000026249	DBX2 (ENSBTAG00000006635) #31	NELL2 (ENSBTAG00000032183) #32	ENSBTAG00000032150
American bison	MODERN SPECIES	3008	ENSBBBG00000007607 ##7	ENSBBBG00000006991 ##7	ZNF641 (ENSBBBG00000003561) #8	OR10AD1 (ENSBBBG00000014653) #10	CCDC184 (ENSBBBG00000014636) #11	ASB8 (ENSBBBG00000014631) #12	PFKM (ENSBBBG00000003512) #13	SENP1 (ENSBBBG00000014417) #14	COL2A1 (ENSBBBG00000003288) #15	TMEM106C (ENSBBBG00000014271) #16	VDR (ENSBBBG00000014238) #17	HDAC7 (ENSBBBG00000014193) #18	SLC48A1 (ENSBBBG00000014099) #19	RAPGEF3 (ENSBBBG00000003149) #20	ENDOU (ENSBBBG00000003048) #21	RPAP3 (ENSBBBG00000003039) #22	ENSBBBG00000013896	PCED1B (ENSBBBG00000013892) #23	AMIGO2 (ENSBBBG00000013887) #24	SLC38A4 (ENSBBBG00000002999) #25	SLC38A2 (ENSBBBG00000013855) #26	SLC38A1 (ENSBBBG00000013825) #27	SCAF11 (ENSBBBG00000002951) #28	ARID2 (ENSBBBG00000007979) #29
Camelidae	ANCESTRAL SPECIES	27	ENSGT00390000014843	ENSGT00940000162202.B ##7	ENSGT00940000162121 #8	ENSGT01100000263574.a.n #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Alpaca	MODERN SPECIES	3494															ENDOU (ENSVPAG00000004976) #21	RPAP3 (ENSVPAG00000004975) #22
Arabian camel	MODERN SPECIES	3	ENSCDRG00005010054 ##7	ENSCDRG00005010078 ##7	ZNF641 (ENSCDRG00005010093) #8	OR10AD1 (ENSCDRG00005010130) #10	CCDC184 (ENSCDRG00005010144) #11	ASB8 (ENSCDRG00005010171) #12	PFKM (ENSCDRG00005010318) #13	SENP1 (ENSCDRG00005011059) #14	COL2A1 (ENSCDRG00005011215) #15	TMEM106C (ENSCDRG00005011788) #16	VDR (ENSCDRG00005011877) #17	HDAC7 (ENSCDRG00005012006) #18	SLC48A1 (ENSCDRG00005012473) #19	RAPGEF3 (ENSCDRG00005012525) #20	ENDOU (ENSCDRG00005012943) #21	RPAP3 (ENSCDRG00005013159) #22	PCED1B (ENSCDRG00005013290) #23	AMIGO2 (ENSCDRG00005013338) #24	SLC38A4 (ENSCDRG00005013359) #25	SLC38A2 (ENSCDRG00005013409) #26	SLC38A1 (ENSCDRG00005013640) #27	SCAF11 (ENSCDRG00005013730) #28	ARID2 (ENSCDRG00005013876) #29	ANO6 (ENSCDRG00005014121) #30	DBX2 (ENSCDRG00005014422) #31	NELL2 (ENSCDRG00005003319) #32	TMEM117 (ENSCDRG00005003522) #33	TWF1 (ENSCDRG00005003599) #34	IRAK4 (ENSCDRG00005003677) #35	PUS7L (ENSCDRG00005003762) #36	ADAMTS20 (ENSCDRG00005003815) #37
Suina	ANCESTRAL SPECIES	4	ENSGT01100000263574.a.n #10	ENSGT00730000111596	ENSGT01100000263574.a.m #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000167360	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Chacoan peccary	MODERN SPECIES	873	ENSCWAG00000021520 ##7	ZNF641 (ENSCWAG00000021524) #8	ENSCWAG00000021534 #10	ENSCWAG00000021538 #10	CCDC184 (ENSCWAG00000021544) #11	ASB8 (ENSCWAG00000021553) #12	PFKM (ENSCWAG00000021591) #13	SENP1 (ENSCWAG00000021657) #14	COL2A1 (ENSCWAG00000021677) #15	ENSCWAG00000021706	VDR (ENSCWAG00000021718) #17	HDAC7 (ENSCWAG00000021727) #18	SLC48A1 (ENSCWAG00000021779) #19	RAPGEF3 (ENSCWAG00000021800) #20	ENDOU (ENSCWAG00000021847) #21	RPAP3 (ENSCWAG00000021867) #22	PCED1B (ENSCWAG00000021873) #23	AMIGO2 (ENSCWAG00000021878) #24	SLC38A4 (ENSCWAG00000021880) #25	SLC38A2 (ENSCWAG00000021890) #26	SLC38A1 (ENSCWAG00000021900) #27	SCAF11 (ENSCWAG00000021903) #28	ARID2 (ENSCWAG00000021907) #29
Pig	MODERN SPECIES	13	ENSSSCG00000053598 #10	ENSSSCG00000044604 #10	CCDC184 (ENSSSCG00000039340) #11	ENSSSCG00000021024	PFKM (ENSSSCG00000021129) #13	ENSSSCG00000047251	SENP1 (ENSSSCG00000000816) #14	COL2A1 (ENSSSCG00000025523) #15	ENSSSCG00000054670	ENSSSCG00000028397 #16	VDR (ENSSSCG00000020864) #17	HDAC7 (ENSSSCG00000027859) #18	SLC48A1 (ENSSSCG00000036775) #19	RAPGEF3 (ENSSSCG00000023526) #20	ENDOU (ENSSSCG00000033142) #21	RPAP3 (ENSSSCG00000021166) #22	ENSSSCG00000043909	PCED1B (ENSSSCG00000000811) #23	AMIGO2 (ENSSSCG00000000810) #24	SLC38A4 (ENSSSCG00000026597) #25	SLC38A2 (ENSSSCG00000000808) #26	SLC38A1 (ENSSSCG00000000807) #27	ENSSSCG00000034097	ENSSSCG00000059840	SCAF11 (ENSSSCG00000000806) #28	ENSSSCG00000046889	ENSSSCG00000047850	ARID2 (ENSSSCG00000030685) #29	ANO6 (ENSSSCG00000000804) #30	DBX2 (ENSSSCG00000035938) #31	NELL2 (ENSSSCG00000000802) #32
Laurasiatheria_b	ANCESTRAL SPECIES	6	ENSGT00940000165904.a	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00960000189677	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36
Carnivora	ANCESTRAL SPECIES	3	ENSGT00940000165904.a	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00960000189677	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36
Caniformia	ANCESTRAL SPECIES	19	ENSGT00940000165904.a	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d.i.a #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00960000189677	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36
Caniformia_b	ANCESTRAL SPECIES	17	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a.r #10	ENSGT01100000263574.a.q #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d.i.a #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Ursidae	ANCESTRAL SPECIES	25	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a.r #10	ENSGT01100000263574.a.q #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d.i.a #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37	ENSGT00940000157529
Ursus	ANCESTRAL SPECIES	127	ENSGT00940000162202.B ##7	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a.r #10	ENSGT01100000263574.a.q #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d.i.a #13	ENSGT00940000155489.b.f #14	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37	ENSGT00940000157529
Polar bear	MODERN SPECIES	262	ENSUMAG00000006380 ##7	ZNF641 (ENSUMAG00000006373) #8	H1-7 (ENSUMAG00000006370)	ENSUMAG00000006367 #10	ENSUMAG00000006366 #10	CCDC184 (ENSUMAG00000006363) #11	ASB8 (ENSUMAG00000006359) #12	PFKM (ENSUMAG00000001996) #13	SENP1 (ENSUMAG00000001116) #14	TMEM106C (ENSUMAG00000001084) #16	VDR (ENSUMAG00000000988) #17	HDAC7 (ENSUMAG00000000604) #18	SLC48A1 (ENSUMAG00000000574) #19	RAPGEF3 (ENSUMAG00000000396) #20	ENDOU (ENSUMAG00000000381) #21	RPAP3 (ENSUMAG00000000363) #22	AMIGO2 (ENSUMAG00000000330) #24	SLC38A4 (ENSUMAG00000000063) #25	ENSUMAG00000024312	SLC38A2 (ENSUMAG00000024311) #26	SLC38A1 (ENSUMAG00000024309) #27	SCAF11 (ENSUMAG00000024308) #28	ARID2 (ENSUMAG00000024221) #29	ANO6 (ENSUMAG00000024213) #30	NELL2 (ENSUMAG00000024209) #32	TMEM117 (ENSUMAG00000024207) #33	TWF1 (ENSUMAG00000024206) #34	IRAK4 (ENSUMAG00000024205) #35	PUS7L (ENSUMAG00000024204) #36	ADAMTS20 (ENSUMAG00000024203) #37	PRICKLE1 (ENSUMAG00000024201)
American black bear	MODERN SPECIES	749											HDAC7 (ENSUAMG00000026809) #18	SLC48A1 (ENSUAMG00000027039) #19	ENSUAMG00000027040 #20	ENSUAMG00000027044 #20	ENDOU (ENSUAMG00000027053) #21	RPAP3 (ENSUAMG00000027054) #22
Giant Panda	MODERN SPECIES	7	ZNF641 (ENSAMEG00000024735) #8	H1-7 (ENSAMEG00000020124)	OR10AD1 (ENSAMEG00000026664) #10	CCDC184 (ENSAMEG00000029620) #11	CCDC184 (ENSAMEG00000025183) #11	ASB8 (ENSAMEG00000013894) #12	PFKM (ENSAMEG00000013791) #13	SENP1 (ENSAMEG00000013767) #14	COL2A1 (ENSAMEG00000027152) #15	TMEM106C (ENSAMEG00000013749) #16	VDR (ENSAMEG00000013706) #17	HDAC7 (ENSAMEG00000028928) #18	SLC48A1 (ENSAMEG00000013704) #19	RAPGEF3 (ENSAMEG00000013593) #20	ENDOU (ENSAMEG00000013582) #21	RPAP3 (ENSAMEG00000006986) #22	ENSAMEG00000029636	AMIGO2 (ENSAMEG00000019328) #24	SLC38A4 (ENSAMEG00000006884) #25	SLC38A2 (ENSAMEG00000006810) #26	SLC38A1 (ENSAMEG00000006789) #27	SCAF11 (ENSAMEG00000013392) #28	ARID2 (ENSAMEG00000013404) #29	ANO6 (ENSAMEG00000015748) #30	DBX2 (ENSAMEG00000015811) #31	NELL2 (ENSAMEG00000006977) #32	TMEM117 (ENSAMEG00000028780) #33	TWF1 (ENSAMEG00000017332) #34	IRAK4 (ENSAMEG00000017312) #35	PUS7L (ENSAMEG00000017309) #36	ADAMTS20 (ENSAMEG00000017294) #37
Mustelinae	ANCESTRAL SPECIES	118			ENSGT01100000263574.a.r #10	ENSGT01100000263574.a.q #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d.i.a #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000157455.b.f	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36
American mink	MODERN SPECIES	85			ENSNVIG00000004140 #10	ENSNVIG00000004149 #10	CL068 (ENSNVIG00000004152) #11	ASB8 (ENSNVIG00000004156) #12	PFKM (ENSNVIG00000004218) #13	SENP1 (ENSNVIG00000004887) #14	COL2A1 (ENSNVIG00000004979) #15	TMEM106C (ENSNVIG00000005151) #16	VDR (ENSNVIG00000005199) #17	HDAC7 (ENSNVIG00000005246) #18	HRG1 (ENSNVIG00000005493) #19	RAPGEF3 (ENSNVIG00000005512) #20	ENDOU (ENSNVIG00000005726) #21	RPAP3 (ENSNVIG00000005809) #22	PCED1B (ENSNVIG00000005930) #23	AMIGO2 (ENSNVIG00000005943) #24	SLC38A4 (ENSNVIG00000005947) #25	SLC38A2 (ENSNVIG00000005982) #26	S38A1 (ENSNVIG00000006047) #27	SCAF11 (ENSNVIG00000006238) #28	ARID2 (ENSNVIG00000006300) #29	ENSNVIG00000006429	ANO6 (ENSNVIG00000006439) #30	DBX2 (ENSNVIG00000006586) #31	NELL2 (ENSNVIG00000006620) #32	TM117 (ENSNVIG00000007025) #33	ENSNVIG00000007066	ENSNVIG00000007073 #34	IRAK4 (ENSNVIG00000007084) #35
Ferret	MODERN SPECIES	275			ENSMPUG00000018957 #10	ENSMPUG00000018952 #10	CCDC184 (ENSMPUG00000018945) #11	ASB8 (ENSMPUG00000000445) #12	PFKM (ENSMPUG00000000441) #13	SENP1 (ENSMPUG00000000436) #14	COL2A1 (ENSMPUG00000000429) #15	TMEM106C (ENSMPUG00000000424) #16	VDR (ENSMPUG00000000419) #17	HDAC7 (ENSMPUG00000000416) #18	SLC48A1 (ENSMPUG00000000410) #19	ENSMPUG00000000407 #20	ENDOU (ENSMPUG00000000406) #21	RPAP3 (ENSMPUG00000000401) #22	ENSMPUG00000000398 #23	AMIGO2 (ENSMPUG00000018940) #24	SLC38A4 (ENSMPUG00000000394) #25	SLC38A2 (ENSMPUG00000000389) #26	SLC38A1 (ENSMPUG00000000386) #27	SCAF11 (ENSMPUG00000000384) #28	ARID2 (ENSMPUG00000000380) #29	ENSMPUG00000000377	ANO6 (ENSMPUG00000000374) #30	ENSMPUG00000000373	DBX2 (ENSMPUG00000000372) #31	NELL2 (ENSMPUG00000000368) #32	TMEM117 (ENSMPUG00000000366) #33	TWF1 (ENSMPUG00000000364) #34	IRAK4 (ENSMPUG00000000361) #35
Canidae	ANCESTRAL SPECIES	8	ENSGT01100000263574.a.o.a #10	ENSGT01100000263574.a.o.b #10	ENSGT01100000263574.a.p #10	ENSGT00390000002978 #11	ENSGT00940000159366.j #12	ENSGT00940000155440.d.i.b.a #13	ENSGT00940000155440.d.i.a #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00950000186452	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00960000189677	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35
Canis_lupus	ANCESTRAL SPECIES	14	ENSGT00390000001347.v.c.b	ENSGT01100000263574.a.o.b #10	ENSGT01100000263574.a.p #10	ENSGT00390000002978 #11	ENSGT00940000159366.j #12	ENSGT00940000155440.d.i.b.a #13	ENSGT00940000155440.d.i.a #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00950000186452	ENSGT01030000234916.i	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00960000189677	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34
Dog	MODERN SPECIES	19	ENSCAFG00845022344	ENSCAFG00845022369 #10	ENSCAFG00845022383	ENSCAFG00845022404 #10	ENSCAFG00845022492 #11	ASB8 (ENSCAFG00845022537) #12	ENSCAFG00845022883 #13	SENP1 (ENSCAFG00845023514) #14	COL2A1 (ENSCAFG00845023977) #15	TMEM106C (ENSCAFG00845024661) #16	VDR (ENSCAFG00845024745) #17	HDAC7 (ENSCAFG00845024987) #18	SLC48A1 (ENSCAFG00845025577) #19	RAPGEF3 (ENSCAFG00845025684) #20	ENDOU (ENSCAFG00845026395) #21	RPAP3 (ENSCAFG00845026651) #22	PCED1B (ENSCAFG00845026815) #23	AMIGO2 (ENSCAFG00845026869) #24	SLC38A4 (ENSCAFG00845026984) #25	ENSCAFG00845027350	SLC38A2 (ENSCAFG00845027394) #26	SLC38A1 (ENSCAFG00845027508) #27	SCAF11 (ENSCAFG00845027751) #28	ARID2 (ENSCAFG00845028008) #29	ANO6 (ENSCAFG00845028362) #30	DBX2 (ENSCAFG00845028644) #31	NELL2 (ENSCAFG00845028728) #32	TMEM117 (ENSCAFG00845029093) #33	TWF1 (ENSCAFG00845029147) #34	IRAK4 (ENSCAFG00845029210) #35	PUS7L (ENSCAFG00845029329) #36
Dingo	MODERN SPECIES	329	ENSCAFG00020013270 #10	ENSCAFG00020013269	ENSCAFG00020013268 #10	ENSCAFG00020013265 #10	CCDC184 (ENSCAFG00020013264) #11	ASB8 (ENSCAFG00020013263) #12	ENSCAFG00020011554 #13	ENSCAFG00020011486 #13	SENP1 (ENSCAFG00020011329) #14	TMEM106C (ENSCAFG00020011308) #16	VDR (ENSCAFG00020011290) #17	HDAC7 (ENSCAFG00020011273) #18	SLC48A1 (ENSCAFG00020011272) #19	RAPGEF3 (ENSCAFG00020011039) #20	ENDOU (ENSCAFG00020011005) #21	RPAP3 (ENSCAFG00020010996) #22	PCED1B (ENSCAFG00020010981) #23	ENSCAFG00020010975	AMIGO2 (ENSCAFG00020010959) #24	SLC38A4 (ENSCAFG00020010941) #25	ENSCAFG00020010932	ENSCAFG00020010931	SLC38A2 (ENSCAFG00020010912) #26	SLC38A1 (ENSCAFG00020010878) #27	ENSCAFG00020010872	SCAF11 (ENSCAFG00020010858) #28	ARID2 (ENSCAFG00020010795) #29	ANO6 (ENSCAFG00020010620) #30	DBX2 (ENSCAFG00020010591) #31	ENSCAFG00020010583	NELL2 (ENSCAFG00020010531) #32
Red fox	MODERN SPECIES	32	ENSVVUG00000019529 #10	ENSVVUG00000019528 #10	CCDC184 (ENSVVUG00000019524) #11	ASB8 (ENSVVUG00000019522) #12	ENSVVUG00000018191 #13	ENSVVUG00000018115 #13	SENP1 (ENSVVUG00000018093) #14	COL2A1 (ENSVVUG00000018059) #15	TMEM106C (ENSVVUG00000018056) #16	VDR (ENSVVUG00000018048) #17	HDAC7 (ENSVVUG00000018010) #18	ENSVVUG00000017995	ENSVVUG00000017989 #20	ENSVVUG00000017974 #20	ENDOU (ENSVVUG00000017953) #21	RPAP3 (ENSVVUG00000017947) #22	ENSVVUG00000017935 #23	ENSVVUG00000017929	SLC38A4 (ENSVVUG00000017144) #25	ENSVVUG00000017102	SLC38A2 (ENSVVUG00000017097) #26	SLC38A1 (ENSVVUG00000017089) #27	ENSVVUG00000017077	SCAF11 (ENSVVUG00000017060) #28	ARID2 (ENSVVUG00000017041) #29	ANO6 (ENSVVUG00000017023) #30	DBX2 (ENSVVUG00000017017) #31	NELL2 (ENSVVUG00000017008) #32	ENSVVUG00000017007	TMEM117 (ENSVVUG00000017003) #33	TWF1 (ENSVVUG00000016986) #34
Felidae	ANCESTRAL SPECIES	2	ENSGT00940000162202.B ##7	ENSGT00940000162121 #8	ENSGT01100000263574.a.t #10	ENSGT01100000263574.a.s #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Panthera	ANCESTRAL SPECIES		ENSGT00940000162202.B ##7	ENSGT00940000162121 #8	ENSGT01100000263574.a.t #10	ENSGT01100000263574.a.s #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Tiger	MODERN SPECIES	14	ENSPTIG00000000355 ##7	ZNF641 (ENSPTIG00000013144) #8	ENSPTIG00000000286 #10	ENSPTIG00000000278 #10	CCDC184 (ENSPTIG00000000266) #11	ASB8 (ENSPTIG00000009522) #12	PFKM (ENSPTIG00000018015) #13	SENP1 (ENSPTIG00000016220) #14	COL2A1 (ENSPTIG00000021079) #15	TMEM106C (ENSPTIG00000017084) #16	VDR (ENSPTIG00000016424) #17	HDAC7 (ENSPTIG00000012011) #18	SLC48A1 (ENSPTIG00000011547) #19	RAPGEF3 (ENSPTIG00000021118) #20	ENDOU (ENSPTIG00000018880) #21	RPAP3 (ENSPTIG00000015996) #22	AMIGO2 (ENSPTIG00000006810) #24	SLC38A4 (ENSPTIG00000014780) #25	SLC38A2 (ENSPTIG00000013595) #26	SLC38A1 (ENSPTIG00000009524) #27	SCAF11 (ENSPTIG00000004819) #28	ARID2 (ENSPTIG00000018094) #29	ENSPTIG00000017063	ANO6 (ENSPTIG00000011556) #30	DBX2 (ENSPTIG00000011173) #31	NELL2 (ENSPTIG00000019686) #32	TMEM117 (ENSPTIG00000018522) #33	TWF1 (ENSPTIG00000015322) #34	IRAK4 (ENSPTIG00000013518) #35	PUS7L (ENSPTIG00000012752) #36	ADAMTS20 (ENSPTIG00000017347) #37
Panthera_a	ANCESTRAL SPECIES	5	ENSGT00940000162202.B ##7	ENSGT00940000162121 #8	ENSGT01100000263574.a.t #10	ENSGT01100000263574.a.s #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000170855	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36
leopard	MODERN SPECIES	77	ENSPPRG00000021246 ##7	ZNF641 (ENSPPRG00000009974) #8	ENSPPRG00000010042 #10	ENSPPRG00000021316 #10	CCDC184 (ENSPPRG00000021325) #11	ASB8 (ENSPPRG00000011411) #12	PFKM (ENSPPRG00000024853) #13	SENP1 (ENSPPRG00000024343) #14	COL2A1 (ENSPPRG00000002708) #15	TMEM106C (ENSPPRG00000006497) #16	VDR (ENSPPRG00000007108) #17	HDAC7 (ENSPPRG00000013411) #18	SLC48A1 (ENSPPRG00000013761) #19	RAPGEF3 (ENSPPRG00000004207) #20	ENDOU (ENSPPRG00000005665) #21	RPAP3 (ENSPPRG00000008280) #22	PCED1B (ENSPPRG00000015438) #23	AMIGO2 (ENSPPRG00000015488) #24	SLC38A4 (ENSPPRG00000009487) #25	ENSPPRG00000009534	SLC38A2 (ENSPPRG00000010016) #26	SLC38A1 (ENSPPRG00000012581) #27	SCAF11 (ENSPPRG00000013839) #28	ARID2 (ENSPPRG00000018882) #29	ANO6 (ENSPPRG00000000217) #30	DBX2 (ENSPPRG00000000538) #31	NELL2 (ENSPPRG00000004101) #32	TMEM117 (ENSPPRG00000005464) #33	ENSPPRG00000006112 #34	IRAK4 (ENSPPRG00000007669) #35	PUS7L (ENSPPRG00000007811) #36
lion	MODERN SPECIES	7	ENSPLOG00000008828 ##7	ZNF641 (ENSPLOG00000008748) #8	ENSPLOG00000008660 #10	ENSPLOG00000008640 #10	CCDC184 (ENSPLOG00000008626) #11	ASB8 (ENSPLOG00000008587) #12	PFKM (ENSPLOG00000008489) #13	SENP1 (ENSPLOG00000008369) #14	COL2A1 (ENSPLOG00000007843) #15	TMEM106C (ENSPLOG00000007712) #16	VDR (ENSPLOG00000007690) #17	HDAC7 (ENSPLOG00000007477) #18	ENSPLOG00000007382 #19	RAPGEF3 (ENSPLOG00000007260) #20	ENDOU (ENSPLOG00000007100) #21	RPAP3 (ENSPLOG00000007020) #22	PCED1B (ENSPLOG00000006982) #23	AMIGO2 (ENSPLOG00000006974) #24	SLC38A4 (ENSPLOG00000006929) #25	ENSPLOG00000006905	SLC38A2 (ENSPLOG00000006823) #26	ENSPLOG00000006768	SLC38A1 (ENSPLOG00000006704) #27	SCAF11 (ENSPLOG00000006624) #28	ARID2 (ENSPLOG00000006471) #29	ANO6 (ENSPLOG00000006243) #30	DBX2 (ENSPLOG00000006145) #31	NELL2 (ENSPLOG00000021721) #32	TMEM117 (ENSPLOG00000021636) #33	TWF1 (ENSPLOG00000021594) #34	IRAK4 (ENSPLOG00000021555) #35
Cat	MODERN SPECIES	238	ENSFCAG00000028364 ##7	ZNF641 (ENSFCAG00000001972) #8	OR10AD1F (ENSFCAG00000011517) #10	ENSFCAG00000002189 #10	CCDC184 (ENSFCAG00000024252) #11	ASB8 (ENSFCAG00000014005) #12	PFKM (ENSFCAG00000014004) #13	SENP1 (ENSFCAG00000014003) #14	COL2A1 (ENSFCAG00000014002) #15	TMEM106C (ENSFCAG00000014001)	VDR (ENSFCAG00000024594) #17	HDAC7 (ENSFCAG00000013999) #18	SLC48A1 (ENSFCAG00000040642) #19	RAPGEF3 (ENSFCAG00000013996) #20	ENDOU (ENSFCAG00000013989) #21	RPAP3 (ENSFCAG00000025732) #22	PCED1B (ENSFCAG00000009338) #23	AMIGO2 (ENSFCAG00000001520) #24	SLC38A4 (ENSFCAG00000014125) #25	SLC38A2 (ENSFCAG00000022021) #26	SLC38A1 (ENSFCAG00000013535) #27	SCAF11 (ENSFCAG00000012832) #28	ARID2 (ENSFCAG00000012831) #29	ANO6 (ENSFCAG00000012828) #30	DBX2 (ENSFCAG00000044598) #31	NELL2 (ENSFCAG00000018358) #32	TMEM117 (ENSFCAG00000044611) #33	TWF1 (ENSFCAG00000026764) #34	IRAK4 (ENSFCAG00000021974) #35	PUS7L (ENSFCAG00000005091) #36	ADAMTS20 (ENSFCAG00000010889) #37
Laurasiatheria_c	ANCESTRAL SPECIES	5	ENSGT00940000162202.B ##7	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00960000189677	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36
Chiroptera	ANCESTRAL SPECIES	4	ENSGT00940000162202.A ##7	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Microchiroptera	ANCESTRAL SPECIES	2	ENSGT00940000163803	ENSGT00940000162202.A ##7	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Microbat	DUPLICATION
Microbat	MODERN SPECIES	2486																ENSMLUG00000010969 #22
Microbat	MODERN SPECIES	1028	ENSMLUG00000027444	ZNF641 (ENSMLUG00000003695) #8	ENSMLUG00000003687	ENSMLUG00000023658	CCDC184 (ENSMLUG00000017738) #11	ASB8 (ENSMLUG00000017737) #12	PFKM (ENSMLUG00000017736) #13	SENP1 (ENSMLUG00000006588) #14	COL2A1 (ENSMLUG00000017735) #15	TMEM106C (ENSMLUG00000017734) #16	VDR (ENSMLUG00000000912) #17	HDAC7 (ENSMLUG00000000900) #18	SLC48A1 (ENSMLUG00000024033) #19	RAPGEF3 (ENSMLUG00000011062) #20	ENDOU (ENSMLUG00000011000) #21	ENSMLUG00000029111 #22	PCED1B (ENSMLUG00000010247) #23	AMIGO2 (ENSMLUG00000009909) #24	SLC38A4 (ENSMLUG00000002500) #25	SLC38A2 (ENSMLUG00000005954) #26	SLC38A1 (ENSMLUG00000004812) #27	SCAF11 (ENSMLUG00000015435) #28	ARID2 (ENSMLUG00000006908) #29	ANO6 (ENSMLUG00000007076) #30
Greater horseshoe bat	MODERN SPECIES	1	OR5BS1P (ENSRFEG00010008042)	ENSRFEG00010008030 ##7	ZNF641 (ENSRFEG00010007923) #8	ENSRFEG00010007885	CCDC184 (ENSRFEG00010007804) #11	ASB8 (ENSRFEG00010007697) #12	PFKM (ENSRFEG00010007343) #13	SENP1 (ENSRFEG00010007260) #14	COL2A1 (ENSRFEG00010006489) #15	TMEM106C (ENSRFEG00010006321) #16	VDR (ENSRFEG00010006264) #17	HDAC7 (ENSRFEG00010005995) #18	SLC48A1 (ENSRFEG00010005847) #19	RAPGEF3 (ENSRFEG00010005730) #20	ENDOU (ENSRFEG00010005631) #21	RPAP3 (ENSRFEG00010005486) #22	PCED1B (ENSRFEG00010005446) #23	AMIGO2 (ENSRFEG00010005431) #24	SLC38A4 (ENSRFEG00010005352) #25	ENSRFEG00010005286 #26	SLC38A1 (ENSRFEG00010005255) #27	SCAF11 (ENSRFEG00010005211) #28	ARID2 (ENSRFEG00010005163) #29	ANO6 (ENSRFEG00010005078) #30	DBX2 (ENSRFEG00010005057) #31	NELL2 (ENSRFEG00010005007) #32	TMEM117 (ENSRFEG00010004973) #33	TWF1 (ENSRFEG00010004957) #34	IRAK4 (ENSRFEG00010004937) #35	PUS7L (ENSRFEG00010004920) #36	ADAMTS20 (ENSRFEG00010004890) #37
Megabat	MODERN SPECIES	1445													HDAC7 (ENSPVAG00000009384) #18	RAPGEF3 (ENSPVAG00000009380) #20	ENDOU (ENSPVAG00000009378) #21	RPAP3 (ENSPVAG00000009375) #22
Equus	ANCESTRAL SPECIES	16	ENSGT00940000162202.B ##7	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b.f #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d.a #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00960000189677	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36
Donkey	MODERN SPECIES	14	ZNF641 (ENSEASG00005035267) #8	H1-7 (ENSEASG00005023523)	ENSEASG00005023522 #10	ENSEASG00005026742 #10	CCDC184 (ENSEASG00005026131) #11	ASB8 (ENSEASG00005033460) #12	PFKM (ENSEASG00005023519) #13	SENP1 (ENSEASG00005023518) #14	COL2A1 (ENSEASG00005023517) #15	TMEM106C (ENSEASG00005023516) #16	VDR (ENSEASG00005023515) #17	HDAC7 (ENSEASG00005023514) #18	SLC48A1 (ENSEASG00005023513) #19	RAPGEF3 (ENSEASG00005023512) #20	ENDOU (ENSEASG00005023511) #21	RPAP3 (ENSEASG00005023510) #22	PCED1B (ENSEASG00005023509) #23	AMIGO2 (ENSEASG00005033046) #24	SLC38A4 (ENSEASG00005023507) #25	SLC38A2 (ENSEASG00005023506) #26	SLC38A1 (ENSEASG00005023505) #27	ENSEASG00005034576	SCAF11 (ENSEASG00005023504) #28	ARID2 (ENSEASG00005023503) #29	ANO6 (ENSEASG00005023502) #30	DBX2 (ENSEASG00005023501) #31	NELL2 (ENSEASG00005023499) #32	TMEM117 (ENSEASG00005023498) #33	TWF1 (ENSEASG00005023497) #34	PUS7L (ENSEASG00005023495) #36	IRAK4 (ENSEASG00005023496) #35
Horse	MODERN SPECIES	27	ENSECAG00000037359	C12orf54 (ENSECAG00000039802)	OR8S2 (ENSECAG00000052177) ##7	H1-7P (ENSECAG00000041866)	ZNF641 (ENSECAG00000022720) #8	ASB8 (ENSECAG00000022302) #12	PFKM (ENSECAG00000015087) #13	SENP1 (ENSECAG00000010568) #14	COL2A1 (ENSECAG00000022313) #15	TMEM106C (ENSECAG00000020351) #16	VDR (ENSECAG00000015822) #17	HDAC7 (ENSECAG00000020424) #18	SLC48A1 (ENSECAG00000031669) #19	RAPGEF3 (ENSECAG00000005870) #20	ENDOU (ENSECAG00000024137) #21	RPAP3 (ENSECAG00000020050) #22	PCED1B (ENSECAG00000052235) #23	AMIGO2 (ENSECAG00000019853) #24	SLC38A4 (ENSECAG00000012541) #25	SLC38A2 (ENSECAG00000014498) #26	SLC38A1 (ENSECAG00000007576) #27	SCAF11 (ENSECAG00000023851) #28	ARID2 (ENSECAG00000019032) #29	ENSECAG00000056897	ANO6 (ENSECAG00000012743) #30	DBX2 (ENSECAG00000012695) #31	NELL2 (ENSECAG00000025101) #32	TMEM117 (ENSECAG00000025096) #33	TWF1 (ENSECAG00000024018) #34	IRAK4 (ENSECAG00000014866) #35	PUS7L (ENSECAG00000011182) #36
Eulipotyphla	ANCESTRAL SPECIES	1668															ENSGT00530000063825.B #21	ENSGT00940000156749 #22
Common shrew	MODERN SPECIES	3000																RPAP3 (ENSSARG00000002800) #22
Hedgehog	MODERN SPECIES	4445															ENDOU (ENSEEUG00000011926) #21	RPAP3 (ENSEEUG00000011707) #22
Atlantogenata	ANCESTRAL SPECIES	5	ENSGT00940000165904	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Afrotheria	ANCESTRAL SPECIES	25	ENSGT00940000162202.A ##7	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Afrotheria_a	ANCESTRAL SPECIES	24	ENSGT00940000159881.a.a.a.f.a	ENSGT00940000162202.A ##7	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a #10	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Elephant	MODERN SPECIES	196	ENSLAFG00000032033 ##7	ZNF641 (ENSLAFG00000029324) #8	H1-7 (ENSLAFG00000013967)	ENSLAFG00000027833 #10	ENSLAFG00000027423 #10	ASB8 (ENSLAFG00000010013) #12	PFKM (ENSLAFG00000010006) #13	SENP1 (ENSLAFG00000010002) #14	COL2A1 (ENSLAFG00000010049) #15	TMEM106C (ENSLAFG00000022701) #16	VDR (ENSLAFG00000006418) #17	HDAC7 (ENSLAFG00000004321) #18	SLC48A1 (ENSLAFG00000032459) #19	RAPGEF3 (ENSLAFG00000014781) #20	ENDOU (ENSLAFG00000007690) #21	RPAP3 (ENSLAFG00000007683) #22	PCED1B (ENSLAFG00000029347) #23	AMIGO2 (ENSLAFG00000009136) #24	ENSLAFG00000025910	SLC38A4 (ENSLAFG00000016067) #25	SLC38A2 (ENSLAFG00000011562) #26	SLC38A1 (ENSLAFG00000005185) #27	SCAF11 (ENSLAFG00000022012) #28	ARID2 (ENSLAFG00000004415) #29	ANO6 (ENSLAFG00000009916) #30	ENSLAFG00000026507	DBX2 (ENSLAFG00000005006) #31	NELL2 (ENSLAFG00000008990) #32	TMEM117 (ENSLAFG00000001665) #33	TWF1 (ENSLAFG00000001664) #34	IRAK4 (ENSLAFG00000001663) #35
Hyrax	MODERN SPECIES	2999														RAPGEF3 (ENSPCAG00000002168) #20	ENDOU (ENSPCAG00000002125) #21	RPAP3 (ENSPCAG00000002031) #22
Tenrec	MODERN SPECIES	2667														RAPGEF3 (ENSETEG00000003301) #20	ENDOU (ENSETEG00000003299) #21	RPAP3 (ENSETEG00000003294) #22
Xenarthra	ANCESTRAL SPECIES	89	ENSGT00940000162202.C #7	ENSGT00940000165904	ENSGT00940000162121 #8	ENSGT00730000111596	ENSGT01100000263574.a #10	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b #14	ENSGT00940000155224 #15	ENSGT00940000161281 #16	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00390000002231.d #23	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29
Sloth	MODERN SPECIES	5942															ENDOU (ENSCHOG00000011100) #21	RPAP3 (ENSCHOG00000011078) #22
Armadillo	MODERN SPECIES	2755	ENSDNOG00000040359	ENSDNOG00000042091	ENSDNOG00000044077 #10	ENSDNOG00000036277 #10	ENSDNOG00000047833 #10	CCDC184 (ENSDNOG00000007955) #11	ASB8 (ENSDNOG00000042195) #12	PFKM (ENSDNOG00000004291) #13	SENP1 (ENSDNOG00000009135) #14	COL2A1 (ENSDNOG00000009040) #15	TMEM106C (ENSDNOG00000034153) #16	VDR (ENSDNOG00000039161) #17	HDAC7 (ENSDNOG00000018384) #18	RAPGEF3 (ENSDNOG00000039847) #20	ENDOU (ENSDNOG00000041014) #21	RPAP3 (ENSDNOG00000016199) #22	PCED1B (ENSDNOG00000043188) #23	AMIGO2 (ENSDNOG00000038459) #24	SLC38A4 (ENSDNOG00000008801) #25	ENSDNOG00000048779	SLC38A2 (ENSDNOG00000036254) #26	SLC38A1 (ENSDNOG00000018363) #27	SCAF11 (ENSDNOG00000015953) #28	ARID2 (ENSDNOG00000014939) #29	ENSDNOG00000049022
Marsupialia	ANCESTRAL SPECIES	24	ENSGT00390000010327	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000161726	ENSGT00730000111596	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b #14	ENSGT00940000155224 #15	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22
Marsupialia_b	ANCESTRAL SPECIES	12	ENSGT00390000010327	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000161726	ENSGT00730000111596	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b #14	ENSGT00940000155224 #15	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT00940000153380.A	ENSGT00390000018322	ENSGT01050000244951.a.a	ENSGT00390000005178	ENSGT00390000003443	ENSGT00940000153377.C	ENSGT00940000160124	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c	ENSGT00530000063113.A	ENSGT00940000158027	ENSGT00940000158848	ENSGT00940000153438.b	ENSGT00390000006485.c
Diprotodontia	ANCESTRAL SPECIES	29	ENSGT00390000010327	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000161726	ENSGT00730000111596	ENSGT00390000002978 #11	ENSGT00940000159366 #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b #14	ENSGT00940000155224 #15	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT01050000244951.a.a	ENSGT00390000005178	ENSGT00390000003443	ENSGT00940000153377.C	ENSGT00940000160124	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c	ENSGT00530000063113.A	ENSGT00940000158027	ENSGT00940000158848	ENSGT00940000153438.b	ENSGT00390000006485.c	ENSGT00940000153678.a.a	ENSGT00950000183775
Diprotodontia_a	ANCESTRAL SPECIES	29	ENSGT00390000010327	ENSGT00940000159544	ENSGT00940000155808	ENSGT00940000161726	ENSGT00730000111596	ENSGT00390000002978 #11	ENSGT00940000159366.g #12	ENSGT00940000155440.d #13	ENSGT00940000155489.b #14	ENSGT00940000155224 #15	ENSGT00940000155473 #17	ENSGT00940000159065 #18	ENSGT00390000002307 #19	ENSGT00940000159931 #20	ENSGT00530000063825.B #21	ENSGT00940000156749 #22	ENSGT01050000244951.a.a	ENSGT00390000005178	ENSGT00390000003443	ENSGT00940000153377.C	ENSGT00940000160124	ENSGT00390000004933	ENSGT00390000015899	ENSGT00390000006367.c	ENSGT00530000063113.A	ENSGT00940000158027	ENSGT00940000158848	ENSGT00940000153438.b	ENSGT00390000006485.c	ENSGT00940000153678.a.a	ENSGT00950000183775
Common wonbat	MODERN SPECIES	1128	CACNB3 (ENSVURG00010006214)	ADCY6 (ENSVURG00010006156)	TEX49 (ENSVURG00010006146)	CCNT1 (ENSVURG00010006120)	KANSL2 (ENSVURG00010006093)	ENSVURG00010006084	ASB8 (ENSVURG00010006046) #12	PFKM (ENSVURG00010005884) #13	SENP1 (ENSVURG00010005800) #14	COL2A1 (ENSVURG00010005638) #15	VDR (ENSVURG00010005603) #17	HDAC7 (ENSVURG00010005565) #18	SLC48A1 (ENSVURG00010005551) #19	RAPGEF3 (ENSVURG00010005514) #20	ENDOU (ENSVURG00010005446) #21	RPAP3 (ENSVURG00010005415) #22	PPFIBP1 (ENSVURG00010005147)	REP15 (ENSVURG00010005093)	ENSVURG00010005084	MRPS35 (ENSVURG00010005073)	MANSC4 (ENSVURG00010005058)	KLHL42 (ENSVURG00010005046)	PTHLH (ENSVURG00010005036)	ENSVURG00010005020	CCDC91 (ENSVURG00010004967)	FAR2 (ENSVURG00010004943)	ERGIC2 (ENSVURG00010004930)	TMTC1 (ENSVURG00010004848)	ENSVURG00010004796	IPO8 (ENSVURG00010004766)	CAPRIN2 (ENSVURG00010004738)
koala	MODERN SPECIES	309	CCNT1 (ENSPCIG00000027711)	KANSL2 (ENSPCIG00000027713)	LALBA (ENSPCIG00000004161)	ENSPCIG00000016478 #12	ENSPCIG00000016482	CCDC184 (ENSPCIG00000016483) #11	ENSPCIG00000032651 #12	PFKM (ENSPCIG00000015868) #13	SENP1 (ENSPCIG00000014356) #14	COL2A1 (ENSPCIG00000035466) #15	VDR (ENSPCIG00000036228) #17	HDAC7 (ENSPCIG00000012641) #18	SLC48A1 (ENSPCIG00000012639) #19	RAPGEF3 (ENSPCIG00000011994) #20	ENDOU (ENSPCIG00000005038) #21	RPAP3 (ENSPCIG00000005053) #22	ENSPCIG00000005069	PPFIBP1 (ENSPCIG00000005251)	ENSPCIG00000008273	MANSC4 (ENSPCIG00000034424)	KLHL42 (ENSPCIG00000013304)	PTHLH (ENSPCIG00000008278)
Wallaby	MODERN SPECIES	5369																ENSMEUG00000012281 #22
Tasmanian devil	MODERN SPECIES	4	ENSSHAG00000026560	ENSSHAG00000003347	ENSSHAG00000001583	ENSSHAG00000024530 #11	ENSSHAG00000001392	ENSSHAG00000029127	ASB8 (ENSSHAG00000030428) #12	PFKM (ENSSHAG00000031357) #13	SENP1 (ENSSHAG00000003840) #14	COL2A1 (ENSSHAG00000004561) #15	VDR (ENSSHAG00000026302) #17	HDAC7 (ENSSHAG00000002512) #18	SLC48A1 (ENSSHAG00000021603) #19	RAPGEF3 (ENSSHAG00000005360) #20	ENDOU (ENSSHAG00000005997) #21	ENSSHAG00000001522 #22	ENSSHAG00000002970	ENSSHAG00000009260	ENSSHAG00000022144	MRPS35 (ENSSHAG00000031147)	MANSC4 (ENSSHAG00000010881)	KLHL42 (ENSSHAG00000029304)	PTHLH (ENSSHAG00000008737)	CCDC91 (ENSSHAG00000028199)	FAR2 (ENSSHAG00000005669)	ERGIC2 (ENSSHAG00000004822)	TMTC1 (ENSSHAG00000021344)	IPO8 (ENSSHAG00000001219)	ENSSHAG00000004287	ENSSHAG00000006261	ENSSHAG00000003921
Opossum	MODERN SPECIES	354								ENSMODG00000009922	ENSMODG00000040995	ENSMODG00000047074	ENSMODG00000041388	ENSMODG00000009768	ENSMODG00000039471	ENSMODG00000043692	ENDOU (ENSMODG00000009733) #21	ENSMODG00000009726 #22
Platypus	MODERN SPECIES	11	MED21 (ENSOANG00000040060)	STK38L (ENSOANG00000030510)	PPFIBP1 (ENSOANG00000006286)	RPL18A (ENSOANG00000009129)	KICS2 (ENSOANG00000043854)	SRGAP1 (ENSOANG00000047717)	RXYLT1 (ENSOANG00000008734)	AVPR1A (ENSOANG00000002085)	PPM1H (ENSOANG00000014788)	MON2 (ENSOANG00000010807)	USP15 (ENSOANG00000010808)	TAFA2 (ENSOANG00000014659)	SLC16A7 (ENSOANG00000009924)	LRIG3 (ENSOANG00000007758)	ATP23 (ENSOANG00000043095)	RPAP3 (ENSOANG00000021025) #22	AMIGO2 (ENSOANG00000039514) #24	SLC38A4 (ENSOANG00000006348) #25	SLC38A2 (ENSOANG00000006346) #26	SLC38A1 (ENSOANG00000006345) #27	SCAF11 (ENSOANG00000001356) #28	ARID2 (ENSOANG00000010834) #29	ANO6 (ENSOANG00000013248) #30	DBX2 (ENSOANG00000048487) #31	NELL2 (ENSOANG00000044895) #32	TMEM117 (ENSOANG00000001738) #33	TWF1 (ENSOANG00000007091) #34	IRAK4 (ENSOANG00000001905) #35	PUS7L (ENSOANG00000021234) #36	ADAMTS20 (ENSOANG00000004962) #37	PRICKLE1 (ENSOANG00000011364)
Sauria	ANCESTRAL SPECIES	4	ENSGT00390000007890	ENSGT00390000015797.f	ENSGT00390000009583	ENSGT00950000182824.a.a.a	ENSGT00390000003526	ENSGT00950000185713	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000179276	ENSGT00940000154932.A	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00960000189677	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00950000182818.B	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36
Lepidosauria	ANCESTRAL SPECIES	3	ENSGT00950000182937.B.b	ENSGT00390000007890	ENSGT00390000015797.f	ENSGT00390000009583	ENSGT00950000182824.a.a.a	ENSGT00390000003526	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000179276	ENSGT00940000154932.A	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00960000189677	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00950000182818.B	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36
Episquamata	ANCESTRAL SPECIES	3	ENSGT00950000182937.B.b	ENSGT00390000007890	ENSGT00390000015797.f	ENSGT00390000009583	ENSGT00950000182824.a.a.a	ENSGT00390000003526	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000179276	ENSGT00940000154932.A	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00960000189677	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00950000182818.B	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36
Laterata	ANCESTRAL SPECIES	6	ENSGT00940000157502	ENSGT00950000182937.B.b	ENSGT00390000007890	ENSGT00390000015797.f	ENSGT00390000009583	ENSGT00950000182824.a.a.a	ENSGT00390000003526	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00950000182818.B	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Common wall lizard	MODERN SPECIES	1	XPOT (ENSPMRG00000016531)	ENSPMRG00000016502	KICS2 (ENSPMRG00000016594)	SRGAP1 (ENSPMRG00000016587)	RXYLT1 (ENSPMRG00000016581)	AVPR1A (ENSPMRG00000016578)	PPM1H (ENSPMRG00000016572)	MON2 (ENSPMRG00000016135)	USP15 (ENSPMRG00000015456)	TAFA2 (ENSPMRG00000015353)	SLC16A7 (ENSPMRG00000015347)	ENSPMRG00000015343	LRIG3 (ENSPMRG00000015318)	ENSPMRG00000015303	ENSPMRG00000015296	RPAP3 (ENSPMRG00000015250) #22	AMIGO2 (ENSPMRG00000015217) #24	SLC38A4 (ENSPMRG00000015203) #25	SLC38A1 (ENSPMRG00000015192) #27	SCAF11 (ENSPMRG00000015183) #28	ARID2 (ENSPMRG00000015159) #29	ANO6 (ENSPMRG00000015061) #30	DBX2 (ENSPMRG00000015025) #31	ENSPMRG00000015018	NELL2 (ENSPMRG00000014985) #32	ENSPMRG00000014966	TMEM117 (ENSPMRG00000014963) #33	TWF1 (ENSPMRG00000014956) #34	IRAK4 (ENSPMRG00000014951) #35	PUS7L (ENSPMRG00000014935) #36	ENSPMRG00000014925
Argentine black and white tegu	MODERN SPECIES	15	RASSF3 (ENSSMRG00000016101)	TBK1 (ENSSMRG00000016100)	XPOT (ENSSMRG00000016099)	RPL18A (ENSSMRG00000016097)	KICS2 (ENSSMRG00000016096)	SRGAP1 (ENSSMRG00000016093)	RXYLT1 (ENSSMRG00000016092)	AVPR1A (ENSSMRG00000016090)	PPM1H (ENSSMRG00000016089)	MON2 (ENSSMRG00000016087)	USP15 (ENSSMRG00000016086)	TAFA2 (ENSSMRG00000016085)	SLC16A7 (ENSSMRG00000016083)	LRIG3 (ENSSMRG00000016082)	ATP23 (ENSSMRG00000016080)	RPAP3 (ENSSMRG00000016079) #22	AMIGO2 (ENSSMRG00000016078) #24	SLC38A4 (ENSSMRG00000016077) #25	SLC38A2 (ENSSMRG00000016076) #26	SLC38A1 (ENSSMRG00000016075) #27	SCAF11 (ENSSMRG00000016074) #28	ARID2 (ENSSMRG00000016073) #29	ANO6 (ENSSMRG00000015831) #30	DBX2 (ENSSMRG00000015830) #31	NELL2 (ENSSMRG00000015829) #32	TMEM117 (ENSSMRG00000015826) #33	TWF1 (ENSSMRG00000015824) #34	IRAK4 (ENSSMRG00000015820) #35	PUS7L (ENSSMRG00000015816) #36	ADAMTS20 (ENSSMRG00000015811) #37	ENSSMRG00000015809
Toxicofera	ANCESTRAL SPECIES	7	ENSGT00950000182937.B.b	ENSGT00390000007890	ENSGT00390000015797.f	ENSGT00390000009583	ENSGT00950000182824.a.a.a	ENSGT00390000003526	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000179276	ENSGT00940000154932.A	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00960000189677	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Elapidae	ANCESTRAL SPECIES	6	ENSGT00950000182937.B.b	ENSGT00390000007890	ENSGT00390000015797.f	ENSGT00390000009583	ENSGT00950000182824.a.a.a.c	ENSGT00390000003526	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A	ENSGT01030000240048	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00960000189677	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00940000157529.f	ENSGT00390000016228
Indian cobra	MODERN SPECIES	6	TBK1 (ENSNNAG00000014633)	XPOT (ENSNNAG00000014759)	RPL18A (ENSNNAG00000015841)	KICS2 (ENSNNAG00000015898)	SRGAP1 (ENSNNAG00000015923)	RXYLT1 (ENSNNAG00000016108)	AVPR1A (ENSNNAG00000016140)	PPM1H (ENSNNAG00000016156)	MON2 (ENSNNAG00000016310)	USP15 (ENSNNAG00000017418)	ENSNNAG00000017444	ENSNNAG00000017446	ENSNNAG00000017451	LRIG3 (ENSNNAG00000017456)	ATP23 (ENSNNAG00000017467)	RPAP3 (ENSNNAG00000017480) #22	AMIGO2 (ENSNNAG00000017497) #24	SLC38A4 (ENSNNAG00000017507) #25	SLC38A2 (ENSNNAG00000017529) #26	SLC38A1 (ENSNNAG00000017537) #27	ENSNNAG00000017547	ENSNNAG00000017561 #29	ENSNNAG00000017583 #29	ANO6 (ENSNNAG00000017597) #30	DBX2 (ENSNNAG00000017612) #31	NELL2 (ENSNNAG00000017626) #32	TMEM117 (ENSNNAG00000017655) #33	TWF1 (ENSNNAG00000017659) #34	IRAK4 (ENSNNAG00000017665) #35	PPHLN1 (ENSNNAG00000003204)	ENSNNAG00000003211
Elapidae_a	ANCESTRAL SPECIES	1	ENSGT00950000182937.B.b	ENSGT00390000007890	ENSGT00390000015797.f	ENSGT00390000009583	ENSGT00950000182824.a.a.a.c	ENSGT00390000003526	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A	ENSGT01030000240048	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00960000189677	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00940000156776	ENSGT00390000003057
Acanthophiinae	ANCESTRAL SPECIES		ENSGT00950000182937.B.b	ENSGT00390000007890	ENSGT00390000015797.f	ENSGT00390000009583	ENSGT00950000182824.a.a.a.c	ENSGT00390000003526	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A	ENSGT01030000240048	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00960000189677	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00940000156776	ENSGT00390000003057
Eastern brown snake	MODERN SPECIES		RASSF3 (ENSPTXG00000007472)	TBK1 (ENSPTXG00000007474)	XPOT (ENSPTXG00000007478)	RPL18A (ENSPTXG00000007481)	KICS2 (ENSPTXG00000007483)	SRGAP1 (ENSPTXG00000000019)	RXYLT1 (ENSPTXG00000000095)	AVPR1A (ENSPTXG00000000130)	PPM1H (ENSPTXG00000000207)	MON2 (ENSPTXG00000000264)	USP15 (ENSPTXG00000000415)	ENSPTXG00000001197	SLC16A7 (ENSPTXG00000001202)	LRIG3 (ENSPTXG00000001210)	ATP23 (ENSPTXG00000001215)	RPAP3 (ENSPTXG00000001225) #22	AMIGO2 (ENSPTXG00000001232) #24	SLC38A4 (ENSPTXG00000001234) #25	SLC38A2 (ENSPTXG00000001237) #26	SLC38A1 (ENSPTXG00000001242) #27	SCAF11 (ENSPTXG00000001250) #28	ARID2 (ENSPTXG00000001255) #29	ANO6 (ENSPTXG00000001262) #30	DBX2 (ENSPTXG00000001269) #31	NELL2 (ENSPTXG00000001276) #32	TMEM117 (ENSPTXG00000001295) #33	TWF1 (ENSPTXG00000001296) #34	IRAK4 (ENSPTXG00000001301) #35	CDC123 (ENSPTXG00000001304)	NUDT5 (ENSPTXG00000001307)	SEC61A2 (ENSPTXG00000001313)
Mainland tiger snake	MODERN SPECIES	20	TBK1 (ENSNSUG00000004732)	XPOT (ENSNSUG00000005054)	ENSNSUG00000005673	KICS2 (ENSNSUG00000005685)	SRGAP1 (ENSNSUG00000005688)	RXYLT1 (ENSNSUG00000005694)	AVPR1A (ENSNSUG00000005698)	PPM1H (ENSNSUG00000005701)	MON2 (ENSNSUG00000005707)	USP15 (ENSNSUG00000006898)	ENSNSUG00000006899	TAFA2 (ENSNSUG00000006900)	SLC16A7 (ENSNSUG00000006901)	LRIG3 (ENSNSUG00000006914)	ATP23 (ENSNSUG00000006920)	RPAP3 (ENSNSUG00000006938) #22	AMIGO2 (ENSNSUG00000006944) #24	SLC38A4 (ENSNSUG00000006949) #25	SLC38A2 (ENSNSUG00000006951) #26	SLC38A1 (ENSNSUG00000006953) #27	ENSNSUG00000006969	SCAF11 (ENSNSUG00000006970) #28	ENSNSUG00000006971 #29	ENSNSUG00000006972 #29	ANO6 (ENSNSUG00000006973) #30	DBX2 (ENSNSUG00000006974) #31	NELL2 (ENSNSUG00000006975) #32	TMEM117 (ENSNSUG00000006977) #33	IRAK4 (ENSNSUG00000006981) #35	CAMK1D (ENSNSUG00000006982)	CDC123 (ENSNSUG00000006986)
Blue-lipped sea krait	MODERN SPECIES	9236																RPAP3 (ENSLLTG00000010746) #22
Lizard	MODERN SPECIES	4	XPOT (ENSACAG00000003154)	ENSACAG00000036775	C12orf66 (ENSACAG00000037612)	SRGAP1 (ENSACAG00000003011)	AVPR1A (ENSACAG00000000443)	PPM1H (ENSACAG00000000448)	MON2 (ENSACAG00000000574)	ENSACAG00000045002	USP15 (ENSACAG00000000802)	TAFA2 (ENSACAG00000001431)	SLC16A7 (ENSACAG00000001451)	ENSACAG00000037027	LRIG3 (ENSACAG00000001513)	ENSACAG00000044759	ATP23 (ENSACAG00000001618)	RPAP3 (ENSACAG00000001636) #22	AMIGO2 (ENSACAG00000001736) #24	SLC38A4 (ENSACAG00000001742) #25	SLC38A1 (ENSACAG00000002285) #27	SCAF11 (ENSACAG00000002372) #28	ARID2 (ENSACAG00000002402) #29	ANO6 (ENSACAG00000002466) #30	DBX2 (ENSACAG00000044656) #31	NELL2 (ENSACAG00000002584) #32	TMEM117 (ENSACAG00000025764) #33	ENSACAG00000037012 #34	ENSACAG00000036528 #34	IRAK4 (ENSACAG00000002988) #35	PUS7L (ENSACAG00000003055) #36	ADAMTS20 (ENSACAG00000003071) #37	PRICKLE1 (ENSACAG00000003086)
tuatara	MODERN SPECIES	1937															ATP23 (ENSSPUG00000008165)	RPAP3 (ENSSPUG00000008234) #22	SLC38A4 (ENSSPUG00000008337) #25	SLC38A2 (ENSSPUG00000008437) #26	SLC38A1 (ENSSPUG00000008463) #27	SCAF11 (ENSSPUG00000008561) #28	ENSSPUG00000008963 #29	ENSSPUG00000008974 #29	ENSSPUG00000008983	ENSSPUG00000008990 #29	ANO6 (ENSSPUG00000009018) #30	DBX2 (ENSSPUG00000009081) #31	ENSSPUG00000009098	NELL2 (ENSSPUG00000009119) #32	ENSSPUG00000009150 #33	ENSSPUG00000009166 #33	TWF1 (ENSSPUG00000009180) #34
Archelosauria	ANCESTRAL SPECIES	3	ENSGT00950000182937.B.b	ENSGT00390000007890	ENSGT00390000015797.f	ENSGT00390000009583	ENSGT00950000182824.a.a.a	ENSGT00390000003526	ENSGT00950000185713	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00950000182818.B	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Archosauria	ANCESTRAL SPECIES	4	ENSGT00940000157502	ENSGT00950000182937.B.b	ENSGT00390000007890	ENSGT00390000015797.f	ENSGT00390000009583	ENSGT00950000182824.a.a.a	ENSGT00390000003526	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00950000182818.B	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Aves	ANCESTRAL SPECIES	1	ENSGT00940000157502	ENSGT00950000182937.B.b	ENSGT00390000007890	ENSGT00390000015797.f	ENSGT00390000009583	ENSGT00950000182824.a.a.a	ENSGT00390000003526	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00950000182818.B	ENSGT00810000125439.B #32	ENSGT00510000049183	ENSGT00390000013052 #33	ENSGT01030000234621.E	ENSGT00530000063868.b #34	ENSGT00940000158792 #35
Neognathae	ANCESTRAL SPECIES	3	ENSGT00940000157502	ENSGT00950000182937.B.b	ENSGT00390000007890	ENSGT00390000015797.f	ENSGT00390000009583	ENSGT00950000182824.a.a.a	ENSGT00390000003526	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00950000182818.B	ENSGT00810000125439.B #32	ENSGT00510000049183	ENSGT00390000013052 #33	ENSGT01030000234621.E	ENSGT00530000063868.b #34	ENSGT00940000158792 #35
Galloanserae	ANCESTRAL SPECIES	3	ENSGT00940000157502	ENSGT00950000182937.B.b	ENSGT00390000007890	ENSGT00390000015797.f	ENSGT00390000009583	ENSGT00950000182824.a.a.a	ENSGT00390000003526	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00950000182818.B	ENSGT00810000125439.B #32	ENSGT00510000049183	ENSGT01030000234621.E	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35
Anatidae	ANCESTRAL SPECIES	14	ENSGT00950000182937.B.b	ENSGT00390000007890	ENSGT00390000015797.f	ENSGT00390000009583	ENSGT00950000182824.a.a.a	ENSGT00390000003526	ENSGT01050000244882.a.a.a.a	ENSGT01020000230670.d	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00950000182818.B	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT01030000234621.E	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36
Pink-footed goose	MODERN SPECIES	26													SLC16A7 (ENSABRG00000004646)	LRIG3 (ENSABRG00000004706)	ATP23 (ENSABRG00000004749)	RPAP3 (ENSABRG00000004757) #22	AMIGO2 (ENSABRG00000004790) #24	SLC38A4 (ENSABRG00000004808) #25	SLC38A2 (ENSABRG00000004821) #26	SLC38A1 (ENSABRG00000004840) #27	SCAF11 (ENSABRG00000004870) #28	ARID2 (ENSABRG00000004894) #29	ANO6 (ENSABRG00000004985) #30	DBX2 (ENSABRG00000005027) #31	ENSABRG00000005044	NELL2 (ENSABRG00000005069) #32	TMEM117 (ENSABRG00000005127) #33	ENSABRG00000005142	TWF1 (ENSABRG00000005156) #34	IRAK4 (ENSABRG00000005163) #35	PUS7L (ENSABRG00000005184) #36
Duck	MODERN SPECIES		RASSF3 (ENSAPLG00000008816)	TBK1 (ENSAPLG00000008445)	XPOT (ENSAPLG00000008073)	RPL18A (ENSAPLG00000008007)	KICS2 (ENSAPLG00000007925)	SRGAP1 (ENSAPLG00000008005)	RXYLT1 (ENSAPLG00000007809)	ENSAPLG00000016872	PPM1H (ENSAPLG00000014950)	MON2 (ENSAPLG00000015190)	USP15 (ENSAPLG00000001801)	TAFA2 (ENSAPLG00000002705)	SLC16A7 (ENSAPLG00000004444)	LRIG3 (ENSAPLG00000008222)	ATP23 (ENSAPLG00000023128)	RPAP3 (ENSAPLG00000008565) #22	AMIGO2 (ENSAPLG00000011511) #24	SLC38A4 (ENSAPLG00000008807) #25	SLC38A2 (ENSAPLG00000017196) #26	SLC38A1 (ENSAPLG00000010056) #27	SCAF11 (ENSAPLG00000010483) #28	ARID2 (ENSAPLG00000010567) #29	ANO6 (ENSAPLG00000010899) #30	DBX2 (ENSAPLG00000011161) #31	ENSAPLG00000011188	NELL2 (ENSAPLG00000011297) #32	ENSAPLG00000011685	TMEM117 (ENSAPLG00000011678) #33	TWF1 (ENSAPLG00000011689) #34	IRAK4 (ENSAPLG00000012255) #35	PUS7L (ENSAPLG00000012601) #36
Phasianidae	ANCESTRAL SPECIES		ENSGT00940000157502	ENSGT00950000182937.B.b	ENSGT00390000007890	ENSGT00390000015797.f	ENSGT00390000009583	ENSGT00950000182824.a.a.a	ENSGT00390000003526	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00950000182818.B	ENSGT00810000125439.B #32	ENSGT00510000049183	ENSGT01030000234621.E	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35
Japanese quail	MODERN SPECIES		GNS (ENSCJPG00005015718)	RASSF3 (ENSCJPG00005015717)	TBK1 (ENSCJPG00005015715)	XPOT (ENSCJPG00005015714)	KICS2 (ENSCJPG00005015712)	SRGAP1 (ENSCJPG00005015439)	RXYLT1 (ENSCJPG00005015438)	AVPR1A (ENSCJPG00005015437)	PPM1H (ENSCJPG00005015435)	MON2 (ENSCJPG00005014458)	USP15 (ENSCJPG00005013459)	TAFA2 (ENSCJPG00005013449)	SLC16A7 (ENSCJPG00005013443)	LRIG3 (ENSCJPG00005013436)	ATP23 (ENSCJPG00005013435)	RPAP3 (ENSCJPG00005013434) #22	AMIGO2 (ENSCJPG00005013431) #24	SLC38A4 (ENSCJPG00005013428) #25	SLC38A2 (ENSCJPG00005013426) #26	SLC38A1 (ENSCJPG00005013425) #27	SCAF11 (ENSCJPG00005013422) #28	ARID2 (ENSCJPG00005013421) #29	ANO6 (ENSCJPG00005013420) #30	DBX2 (ENSCJPG00005013417) #31	ENSCJPG00005013416	NELL2 (ENSCJPG00005013414) #32	TMEM117 (ENSCJPG00005013413) #33	TWF1 (ENSCJPG00005013412) #34	IRAK4 (ENSCJPG00005013411) #35	PUS7L (ENSCJPG00005013410) #36	ADAMTS20 (ENSCJPG00005013409) #37
Phasianidae_b	ANCESTRAL SPECIES	9	ENSGT00940000157502	ENSGT00950000182937.B.b	ENSGT00390000007890	ENSGT00390000015797.f	ENSGT00390000009583	ENSGT00950000182824.a.a.a	ENSGT00390000003526	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00950000182818.B	ENSGT00810000125439.B #32	ENSGT00510000049183	ENSGT01030000234621.E	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35
Chicken	MODERN SPECIES		RASSF3 (ENSGALG00010013129)	TBK1 (ENSGALG00010013089)	XPOT (ENSGALG00010013051)	RPL18A (ENSGALG00010012988)	C1H12ORF66 (ENSGALG00010012980)	SRGAP1 (ENSGALG00010012293)	TMEM5 (ENSGALG00010012198)	AVPR1A (ENSGALG00010011713)	PPM1H (ENSGALG00010013252)	MON2 (ENSGALG00010013236)	USP15 (ENSGALG00010011682)	TAFA2 (ENSGALG00010011825)	SLC16A7 (ENSGALG00010014226)	LRIG3 (ENSGALG00010014194)	ATP23 (ENSGALG00010014151)	RPAP3 (ENSGALG00010014134) #22	AMIGO2 (ENSGALG00010014109) #24	SLC38A4 (ENSGALG00010014033) #25	SLC38A2 (ENSGALG00010013977) #26	SLC38A1 (ENSGALG00010013964) #27	SCAF11 (ENSGALG00010013945) #28	ARID2 (ENSGALG00010013878) #29	ANO6 (ENSGALG00010013784) #30	DBX2 (ENSGALG00010013775) #31	PRLL (ENSGALG00010013765)	NELL2 (ENSGALG00010013749) #32	ENSGALG00010013735	ENSGALG00010001916	TMEM117 (ENSGALG00010001912) #33	TWF1 (ENSGALG00010001899) #34	IRAK4 (ENSGALG00010001879) #35
Turkey	MODERN SPECIES		PPM1H (ENSMGAG00000010144)	MON2 (ENSMGAG00000010123)	USP15 (ENSMGAG00000010065)	TAFA2 (ENSMGAG00000010063)	SLC16A7 (ENSMGAG00000010057)	ENSMGAG00000009615 #30	ENSMGAG00000019866	ENSMGAG00000009656 #29	ENSMGAG00000009682 #28	ENSMGAG00000017752	ENSMGAG00000009687 #27	ENSMGAG00000009732 #26	ENSMGAG00000020524 #25	ENSMGAG00000015688 #24	ENSMGAG00000010016	ENSMGAG00000009987 #22	ENSMGAG00000010024	ENSMGAG00000016543	NELL2 (ENSMGAG00000009558) #32	ENSMGAG00000009553	TMEM117 (ENSMGAG00000009541) #33	TWF1 (ENSMGAG00000009523) #34	IRAK4 (ENSMGAG00000009511) #35	PUS7L (ENSMGAG00000009498) #36	ADAMTS20 (ENSMGAG00000009481) #37	ENSMGAG00000014488	ENSMGAG00000018408	ENSMGAG00000022778	ENSMGAG00000019370	ENSMGAG00000017951	ENSMGAG00000018034
Neognathae_b	ANCESTRAL SPECIES	2	ENSGT00940000157502	ENSGT00950000182937.B.b	ENSGT00390000007890	ENSGT00390000015797.f	ENSGT00390000009583	ENSGT00950000182824.a.a.a	ENSGT00390000003526	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00950000182818.B	ENSGT00810000125439.B #32	ENSGT00510000049183	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36
Neognathae_c	ANCESTRAL SPECIES		ENSGT00940000157502	ENSGT00950000182937.B.b	ENSGT00390000007890	ENSGT00390000015797.f	ENSGT00390000009583	ENSGT00950000182824.a.a.a	ENSGT00390000003526	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00950000182818.B	ENSGT00810000125439.B #32	ENSGT00510000049183	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36
Golden eagle	MODERN SPECIES	21	ENSACCG00020000951	ENSACCG00020000918	ENSACCG00020000908	ENSACCG00020000892	ENSACCG00020000864	ENSACCG00020000843	AVPR1A (ENSACCG00020000815)	PPM1H (ENSACCG00020000778)	ENSACCG00020000757	MON2 (ENSACCG00020000711)	USP15 (ENSACCG00020000636)	TAFA2 (ENSACCG00020000608)	SLC16A7 (ENSACCG00020000576)	LRIG3 (ENSACCG00020000461)	ATP23 (ENSACCG00020000351)	RPAP3 (ENSACCG00020000328) #22	AMIGO2 (ENSACCG00020016183) #24	SLC38A4 (ENSACCG00020016174) #25	SLC38A2 (ENSACCG00020016157) #26	SLC38A1 (ENSACCG00020016137) #27	SCAF11 (ENSACCG00020016114) #28	ENSACCG00020016095 #29	ENSACCG00020016081 #29	ANO6 (ENSACCG00020015997) #30	DBX2 (ENSACCG00020015833) #31	ENSACCG00020015818	NELL2 (ENSACCG00020015785) #32	ARRDC5 (ENSACCG00020015757)	TMEM117 (ENSACCG00020015746) #33	TWF1 (ENSACCG00020015733) #34	IRAK4 (ENSACCG00020015718) #35
Kakapo	MODERN SPECIES	20	RASSF3 (ENSSHBG00005017648)	TBK1 (ENSSHBG00005017520)	XPOT (ENSSHBG00005017501)	RPL18A (ENSSHBG00005017493)	KICS2 (ENSSHBG00005017489)	SRGAP1 (ENSSHBG00005017486)	RXYLT1 (ENSSHBG00005017480)	AVPR1A (ENSSHBG00005017478)	PPM1H (ENSSHBG00005017472)	MON2 (ENSSHBG00005016472)	USP15 (ENSSHBG00005016392)	TAFA2 (ENSSHBG00005016381)	SLC16A7 (ENSSHBG00005016364)	LRIG3 (ENSSHBG00005016320)	ATP23 (ENSSHBG00005016292)	RPAP3 (ENSSHBG00005016281) #22	AMIGO2 (ENSSHBG00005016278) #24	SLC38A4 (ENSSHBG00005016271) #25	SLC38A2 (ENSSHBG00005016258) #26	SLC38A1 (ENSSHBG00005016253) #27	SCAF11 (ENSSHBG00005016249) #28	ARID2 (ENSSHBG00005016236) #29	ANO6 (ENSSHBG00005015161) #30	DBX2 (ENSSHBG00005015066) #31	ENSSHBG00005015059	NELL2 (ENSSHBG00005015045) #32	TMEM117 (ENSSHBG00005015034) #33	TWF1 (ENSSHBG00005015024) #34	IRAK4 (ENSSHBG00005015006) #35	PUS7L (ENSSHBG00005014995) #36	ADAMTS20 (ENSSHBG00005008681) #37
Passeriformes	ANCESTRAL SPECIES	3	ENSGT00940000157502	ENSGT00950000182937.B.b	ENSGT00390000007890	ENSGT00390000015797.f	ENSGT00390000009583	ENSGT00950000182824.a.a.a	ENSGT00390000003526	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00950000182818.B	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Great tit	MODERN SPECIES	10	RASSF3 (ENSPMJG00000012594)	TBK1 (ENSPMJG00000012593)	XPOT (ENSPMJG00000012592)	RPL18A (ENSPMJG00000012589)	KICS2 (ENSPMJG00000012588)	SRGAP1 (ENSPMJG00000012585)	RXYLT1 (ENSPMJG00000012583)	AVPR1A (ENSPMJG00000012582)	PPM1H (ENSPMJG00000012553)	MON2 (ENSPMJG00000011160)	USP15 (ENSPMJG00000011152)	TAFA2 (ENSPMJG00000011148)	SLC16A7 (ENSPMJG00000011137)	LRIG3 (ENSPMJG00000011115)	ATP23 (ENSPMJG00000011109)	RPAP3 (ENSPMJG00000011104) #22	SLC38A4 (ENSPMJG00000011085) #25	SLC38A2 (ENSPMJG00000011067) #26	SLC38A1 (ENSPMJG00000011062) #27	SCAF11 (ENSPMJG00000011058) #28	ARID2 (ENSPMJG00000011036) #29	ANO6 (ENSPMJG00000010990) #30	DBX2 (ENSPMJG00000010987) #31	ENSPMJG00000010975	NELL2 (ENSPMJG00000010970) #32	TMEM117 (ENSPMJG00000010967) #33	TWF1 (ENSPMJG00000010951) #34	IRAK4 (ENSPMJG00000010948) #35	PUS7L (ENSPMJG00000010946) #36	ADAMTS20 (ENSPMJG00000010939) #37	PRICKLE1 (ENSPMJG00000010921)
Passeriformes_d	ANCESTRAL SPECIES	3	ENSGT00940000157502	ENSGT00950000182937.B.b	ENSGT00390000007890	ENSGT00390000015797.f	ENSGT00390000009583	ENSGT00950000182824.a.a.a	ENSGT00390000003526	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00950000182818.B	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Passeriformes_g	ANCESTRAL SPECIES	4	ENSGT00940000157502	ENSGT00950000182937.B.b	ENSGT00390000007890	ENSGT00390000015797.f	ENSGT00390000009583	ENSGT00950000182824.a.a.a	ENSGT00390000003526	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00950000182818.B	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Passeroidea	ANCESTRAL SPECIES	3	ENSGT00940000157502	ENSGT00950000182937.B.b	ENSGT00390000007890	ENSGT00390000015797.f	ENSGT00390000009583	ENSGT00950000182824.a.a.a	ENSGT00390000003526	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00950000182818.B	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Common canary	MODERN SPECIES	29	RASSF3 (ENSSCAG00000002757)	TBK1 (ENSSCAG00000002751)	XPOT (ENSSCAG00000002741)	RPL18A (ENSSCAG00000002732)	KICS2 (ENSSCAG00000002727)	SRGAP1 (ENSSCAG00000001388)	RXYLT1 (ENSSCAG00000000783)	AVPR1A (ENSSCAG00000000621)	PPM1H (ENSSCAG00000000542)	MON2 (ENSSCAG00000000450)	USP15 (ENSSCAG00000000391)	TAFA2 (ENSSCAG00000000375)	SLC16A7 (ENSSCAG00000000363)	LRIG3 (ENSSCAG00000000342)	ATP23 (ENSSCAG00000000332)	RPAP3 (ENSSCAG00000000318) #22	AMIGO2 (ENSSCAG00000000311) #24	SLC38A4 (ENSSCAG00000000293) #25	SLC38A2 (ENSSCAG00000000260) #26	SLC38A1 (ENSSCAG00000000243) #27	SCAF11 (ENSSCAG00000000227) #28	ARID2 (ENSSCAG00000000185) #29	ANO6 (ENSSCAG00000000146) #30	DBX2 (ENSSCAG00000000111) #31	ENSSCAG00000000096	NELL2 (ENSSCAG00000000086) #32	TMEM117 (ENSSCAG00000013547) #33	TWF1 (ENSSCAG00000013540) #34	IRAK4 (ENSSCAG00000013536) #35	PUS7L (ENSSCAG00000013530) #36	ADAMTS20 (ENSSCAG00000013481) #37
Zebra finch	MODERN SPECIES	11	RASSF3 (ENSTGUG00000006523)	TBK1 (ENSTGUG00000006485)	XPOT (ENSTGUG00000006459)	RPL18A (ENSTGUG00000006444)	KICS2 (ENSTGUG00000026688)	SRGAP1 (ENSTGUG00000006378)	RXYLT1 (ENSTGUG00000006370)	AVPR1A (ENSTGUG00000020915)	PPM1H (ENSTGUG00000006354)	MON2 (ENSTGUG00000006318)	USP15 (ENSTGUG00000006263)	TAFA2 (ENSTGUG00000028593)	SLC16A7 (ENSTGUG00000029204)	LRIG3 (ENSTGUG00000006227)	ATP23 (ENSTGUG00000028922)	RPAP3 (ENSTGUG00000006201) #22	AMIGO2 (ENSTGUG00000006197) #24	SLC38A4 (ENSTGUG00000006154) #25	SLC38A2 (ENSTGUG00000006125) #26	SLC38A1 (ENSTGUG00000006103) #27	SCAF11 (ENSTGUG00000006091) #28	ARID2 (ENSTGUG00000006070) #29	ANO6 (ENSTGUG00000006024) #30	DBX2 (ENSTGUG00000026363) #31	ENSTGUG00000023463	NELL2 (ENSTGUG00000005974) #32	TMEM117 (ENSTGUG00000005962) #33	TWF1 (ENSTGUG00000005944) #34	IRAK4 (ENSTGUG00000005932) #35	PUS7L (ENSTGUG00000005924) #36	ADAMTS20 (ENSTGUG00000005861) #37
Medium ground finch	MODERN SPECIES	13	GNS (ENSGFOG00000001346)	RASSF3 (ENSGFOG00000001356)	TBK1 (ENSGFOG00000001364)	XPOT (ENSGFOG00000001384)	RPL18A (ENSGFOG00000001403)	KICS2 (ENSGFOG00000001420)	SRGAP1 (ENSGFOG00000001432)	RXYLT1 (ENSGFOG00000001445)	PPM1H (ENSGFOG00000001456)	MON2 (ENSGFOG00000001496)	USP15 (ENSGFOG00000001597)	TAFA2 (ENSGFOG00000001671)	SLC16A7 (ENSGFOG00000001688)	LRIG3 (ENSGFOG00000001751)	ATP23 (ENSGFOG00000001822)	RPAP3 (ENSGFOG00000001833) #22	AMIGO2 (ENSGFOG00000001846) #24	SLC38A4 (ENSGFOG00000001859) #25	SLC38A2 (ENSGFOG00000001998) #26	SLC38A1 (ENSGFOG00000002647) #27	SCAF11 (ENSGFOG00000002680) #28	ARID2 (ENSGFOG00000002719) #29	ANO6 (ENSGFOG00000002777) #30	ENSGFOG00000003240	NELL2 (ENSGFOG00000003261) #32	TMEM117 (ENSGFOG00000003307) #33	TWF1 (ENSGFOG00000003326) #34	IRAK4 (ENSGFOG00000003376) #35	PUS7L (ENSGFOG00000003401) #36	ADAMTS20 (ENSGFOG00000003496) #37	PRICKLE1 (ENSGFOG00000004963)
Flycatcher	MODERN SPECIES	10	RASSF3 (ENSFALG00000025525)	TBK1 (ENSFALG00000009946)	XPOT (ENSFALG00000009938)	ENSFALG00000009932	C12orf66 (ENSFALG00000023915)	SRGAP1 (ENSFALG00000009882)	RXYLT1 (ENSFALG00000009860)	AVPR1A (ENSFALG00000009852)	PPM1H (ENSFALG00000027933)	MON2 (ENSFALG00000009828)	USP15 (ENSFALG00000009821)	TAFA2 (ENSFALG00000009815)	SLC16A7 (ENSFALG00000007331)	LRIG3 (ENSFALG00000007326)	ATP23 (ENSFALG00000024277)	RPAP3 (ENSFALG00000007312) #22	AMIGO2 (ENSFALG00000015086) #24	ENSFALG00000025756	ENSFALG00000024911	SLC38A4 (ENSFALG00000010142) #25	SLC38A2 (ENSFALG00000010147) #26	SLC38A1 (ENSFALG00000010150) #27	SCAF11 (ENSFALG00000010153) #28	ARID2 (ENSFALG00000010156) #29	ANO6 (ENSFALG00000010163) #30	DBX2 (ENSFALG00000025233) #31	ENSFALG00000010175	NELL2 (ENSFALG00000010183) #32	TMEM117 (ENSFALG00000010190) #33	TWF1 (ENSFALG00000010194) #34	IRAK4 (ENSFALG00000010201) #35
African ostrich	MODERN SPECIES	816													SLC16A7 (ENSSCUG00000010719)	LRIG3 (ENSSCUG00000010723)	ATP23 (ENSSCUG00000010728)	RPAP3 (ENSSCUG00000010730) #22	AMIGO2 (ENSSCUG00000010735) #24	SLC38A4 (ENSSCUG00000010742) #25
Australian saltwater crocodile	MODERN SPECIES	49	RASSF3 (ENSCPRG00005007626)	TBK1 (ENSCPRG00005007640)	XPOT (ENSCPRG00005007647)	RPL18A (ENSCPRG00005007683)	KICS2 (ENSCPRG00005007688)	SRGAP1 (ENSCPRG00005007696)	RXYLT1 (ENSCPRG00005007737)	AVPR1A (ENSCPRG00005007753)	PPM1H (ENSCPRG00005007789)	MON2 (ENSCPRG00005007830)	USP15 (ENSCPRG00005007897)	TAFA2 (ENSCPRG00005007970)	SLC16A7 (ENSCPRG00005008009)	LRIG3 (ENSCPRG00005008046)	ATP23 (ENSCPRG00005008090)	RPAP3 (ENSCPRG00005008095) #22	SLC38A4 (ENSCPRG00005008129) #25	SLC38A2 (ENSCPRG00005008172) #26	SLC38A1 (ENSCPRG00005008184) #27	SCAF11 (ENSCPRG00005008219) #28	ARID2 (ENSCPRG00005008355) #29	ENSCPRG00005008611	ANO6 (ENSCPRG00005008621) #30	ENSCPRG00005008637 #31	ENSCPRG00005008639	NELL2 (ENSCPRG00005008673) #32	TMEM117 (ENSCPRG00005008971) #33	TWF1 (ENSCPRG00005008974) #34	IRAK4 (ENSCPRG00005009003) #35	PUS7L (ENSCPRG00005009013) #36	ADAMTS20 (ENSCPRG00005009043) #37
Cryptodira	ANCESTRAL SPECIES	11	ENSGT00390000007890	ENSGT00390000015797.f	ENSGT00390000009583	ENSGT00950000182824.a.a.a	ENSGT00390000003526	ENSGT00950000185713	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A	ENSGT00940000161214	ENSGT01030000240048	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00950000182818.B	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Testudinoidea	ANCESTRAL SPECIES	4	ENSGT00390000007890	ENSGT00390000015797.f	ENSGT00390000009583	ENSGT00950000182824.a.a.a	ENSGT00390000003526	ENSGT00950000185713	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A	ENSGT00940000161214	ENSGT01030000240048	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00950000182818.B	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Emydidae	ANCESTRAL SPECIES	10	ENSGT00950000182937.B.b	ENSGT00390000007890	ENSGT00390000015797.f	ENSGT00390000009583	ENSGT00950000182824.a.a.a	ENSGT00390000003526	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A	ENSGT00940000161214	ENSGT01030000240048	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00950000182818.B	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
painted turtle	MODERN SPECIES	2392												SLC16A7 (ENSCPBG00000014166)	LRIG3 (ENSCPBG00000014168)	ENSCPBG00000014169	ATP23 (ENSCPBG00000014170)	RPAP3 (ENSCPBG00000014173) #22	SLC38A4 (ENSCPBG00000015315) #25	SLC38A2 (ENSCPBG00000015319) #26	SLC38A1 (ENSCPBG00000015327) #27	SCAF11 (ENSCPBG00000015332) #28	ARID2 (ENSCPBG00000015339) #29	ANO6 (ENSCPBG00000015350) #30	DBX2 (ENSCPBG00000015358) #31	ENSCPBG00000015360	ENSCPBG00000015363	NELL2 (ENSCPBG00000015367) #32	TMEM117 (ENSCPBG00000015381) #33	TWF1 (ENSCPBG00000015386) #34	IRAK4 (ENSCPBG00000015389) #35	PUS7L (ENSCPBG00000015394) #36	ADAMTS20 (ENSCPBG00000015412) #37
Three-toed box turtle	MODERN SPECIES	28	ENSTMTG00000014873	KICS2 (ENSTMTG00000014845)	SRGAP1 (ENSTMTG00000014690)	ENSTMTG00000014654	AVPR1A (ENSTMTG00000014644)	PPM1H (ENSTMTG00000014615)	MON2 (ENSTMTG00000014440)	USP15 (ENSTMTG00000013841)	ENSTMTG00000013792	ENSTMTG00000013788	ENSTMTG00000013765	ENSTMTG00000013753	ENSTMTG00000013745	LRIG3 (ENSTMTG00000013728)	ATP23 (ENSTMTG00000013704)	RPAP3 (ENSTMTG00000013678) #22	AMIGO2 (ENSTMTG00000013668) #24	SLC38A4 (ENSTMTG00000013637) #25	SLC38A2 (ENSTMTG00000013611) #26	SLC38A1 (ENSTMTG00000013575) #27	SCAF11 (ENSTMTG00000013560) #28	ARID2 (ENSTMTG00000020196) #29	ANO6 (ENSTMTG00000020157) #30	DBX2 (ENSTMTG00000020143) #31	ENSTMTG00000020140	NELL2 (ENSTMTG00000020086) #32	TMEM117 (ENSTMTG00000020069) #33	TWF1 (ENSTMTG00000020058) #34	IRAK4 (ENSTMTG00000020042) #35	PUS7L (ENSTMTG00000020033) #36	ADAMTS20 (ENSTMTG00000019772) #37
Testudinidae	ANCESTRAL SPECIES	12	ENSGT00950000182937.B.b	ENSGT00390000007890	ENSGT00390000015797.f	ENSGT00390000009583	ENSGT00950000182824.a.a.a	ENSGT00390000003526	ENSGT00950000185713	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A	ENSGT01030000240048	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00950000182818.B	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Abingdon island giant tortoise	MODERN SPECIES	2214															ATP23 (ENSCABG00000006023)	RPAP3 (ENSCABG00000006020) #22	AMIGO2 (ENSCABG00000006017) #24	SLC38A4 (ENSCABG00000006010) #25	SLC38A2 (ENSCABG00000006006) #26	SLC38A1 (ENSCABG00000006003) #27	ENSCABG00000006000
Goode s thornscrub tortoise	MODERN SPECIES		XPOT (ENSGEVG00005002682)	ENSGEVG00005002778	KICS2 (ENSGEVG00005002789)	SRGAP1 (ENSGEVG00005002858)	RXYLT1 (ENSGEVG00005002924)	ENSGEVG00005002930	AVPR1A (ENSGEVG00005002945)	PPM1H (ENSGEVG00005002962)	MON2 (ENSGEVG00005003008)	USP15 (ENSGEVG00005003124)	ENSGEVG00005003165	ENSGEVG00005003171	ENSGEVG00005003185	LRIG3 (ENSGEVG00005003217)	ATP23 (ENSGEVG00005003290)	RPAP3 (ENSGEVG00005003303) #22	AMIGO2 (ENSGEVG00005003314) #24	SLC38A4 (ENSGEVG00005003329) #25	SLC38A2 (ENSGEVG00005003351) #26	ENSGEVG00005003364	SLC38A1 (ENSGEVG00005003397) #27	SCAF11 (ENSGEVG00005003465) #28	ARID2 (ENSGEVG00005003524) #29	ANO6 (ENSGEVG00005003663) #30	DBX2 (ENSGEVG00005003769) #31	ENSGEVG00005003778	NELL2 (ENSGEVG00005003803) #32	TMEM117 (ENSGEVG00005003842) #33	ENSGEVG00005003850	TWF1 (ENSGEVG00005003860) #34	IRAK4 (ENSGEVG00005003872) #35
Chinese turtle	MODERN SPECIES	1298													SLC16A7 (ENSPSIG00000013956)	LRIG3 (ENSPSIG00000014286)	ATP23 (ENSPSIG00000014641)	RPAP3 (ENSPSIG00000014827) #22	AMIGO2 (ENSPSIG00000001708) #24	SLC38A4 (ENSPSIG00000016916) #25	SLC38A2 (ENSPSIG00000017118) #26	SLC38A1 (ENSPSIG00000017990) #27	SCAF11 (ENSPSIG00000018027) #28	ARID2 (ENSPSIG00000006686) #29	ENSPSIG00000007449	ANO6 (ENSPSIG00000007934) #30	DBX2 (ENSPSIG00000009557) #31	ENSPSIG00000009567	NELL2 (ENSPSIG00000009574) #32	ENSPSIG00000012723	TMEM117 (ENSPSIG00000013012) #33	ENSPSIG00000000090	TWF1 (ENSPSIG00000013037) #34
Anura	ANCESTRAL SPECIES	24	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622	ENSGT00530000063074.b.b	ENSGT00940000154980	ENSGT00940000157713	ENSGT00940000158014	ENSGT00940000155394	ENSGT00390000000406	ENSGT00940000156120.a	ENSGT00940000154932.A	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37	ENSGT00940000157529
Frog	MODERN SPECIES	3	zdhhc17 (ENSXETG00000014315)	csrp2 (ENSXETG00000014318)	e2f7 (ENSXETG00000014320)	nav3 (ENSXETG00000014323)	syt1 (ENSXETG00000004068)	pawr (ENSXETG00000004074)	ppp1r12a (ENSXETG00000021468)	usp15 (ENSXETG00000021472)	tafa2 (ENSXETG00000038846)	ENSXETG00000046348	ENSXETG00000043063	ENSXETG00000035432	slc16a7 (ENSXETG00000021479)	lrig3 (ENSXETG00000021481)	atp23 (ENSXETG00000014677)	rpap3 (ENSXETG00000014674) #22	ENSXETG00000032882	ENSXETG00000042608	amigo2 (ENSXETG00000030376) #24	slc38a4 (ENSXETG00000034014) #25	slc38a2 (ENSXETG00000014662) #26	slc38a1 (ENSXETG00000041195) #27	scaf11 (ENSXETG00000036303) #28	arid2 (ENSXETG00000014656) #29	ano6 (ENSXETG00000031444) #30	dbx2 (ENSXETG00000030548) #31	nell2 (ENSXETG00000014625) #32	tmem117 (ENSXETG00000039872) #33	twf1 (ENSXETG00000026830) #34	fzr1 (ENSXETG00000006812)	irak4 (ENSXETG00000006811) #35
Leishan spiny toad	MODERN SPECIES	6	ENSLLEG00000006812	NAV3 (ENSLLEG00000006893)	ENSLLEG00000007567	ENSLLEG00000007605	ENSLLEG00000007621	ENSLLEG00000007653	SYT1 (ENSLLEG00000007672)	PAWR (ENSLLEG00000007866)	PPP1R12A (ENSLLEG00000007942)	USP15 (ENSLLEG00000008613)	TAFA2 (ENSLLEG00000009675)	ENSLLEG00000009882	SLC16A7 (ENSLLEG00000009924)	LRIG3 (ENSLLEG00000009993)	ATP23 (ENSLLEG00000010270)	RPAP3 (ENSLLEG00000010339) #22	ENSLLEG00000010456	ENSLLEG00000010473	AMIGO2 (ENSLLEG00000010492) #24	TTLL1 (ENSLLEG00000010518)	MCAT (ENSLLEG00000010612)	ENSLLEG00000010641	TSPO (ENSLLEG00000010665)	TTLL12 (ENSLLEG00000010778)	ENSLLEG00000011225	SLC38A4 (ENSLLEG00000011291) #25	SLC38A2 (ENSLLEG00000011414) #26	ENSLLEG00000011527	SLC38A1 (ENSLLEG00000011551) #27	ENSLLEG00000011657	SCAF11 (ENSLLEG00000011699) #28
Coelacanth	MODERN SPECIES	457														LRIG3 (ENSLACG00000016240)	ATP23 (ENSLACG00000014345)	RPAP3 (ENSLACG00000014077) #22	ENSLACG00000014021	SLC38A4 (ENSLACG00000009133) #25	SLC38A2 (ENSLACG00000005138) #26	SLC38A1 (ENSLACG00000000949) #27
Actinopterygii	ANCESTRAL SPECIES	1				ENSGT00940000164581.A.a.b	ENSGT00390000009583	ENSGT00950000182824.a.a.a	ENSGT00390000003526	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00950000183146.a.a #24	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00940000160716 #27	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138 #29	ENSGT00940000158969 #30	ENSGT00950000183093.A.a #31	ENSGT00950000182818.B	ENSGT00810000125439.B #32	ENSGT00390000013052 #33	ENSGT00530000063868.b #34	ENSGT00940000158792 #35	ENSGT00530000063554.b #36	ENSGT00940000158636 #37
Neopterygii	ANCESTRAL SPECIES	160												ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00940000164299.b.a	ENSGT00940000160758	ENSGT00990000206310	ENSGT00940000161105	ENSGT00440000035348	ENSGT00390000004190	ENSGT00390000006670	ENSGT00940000155911	ENSGT00390000007890	ENSGT00390000015797	ENSGT00940000160916	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164
Osteoglossocephalai	ANCESTRAL SPECIES	257					ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00940000159750	ENSGT00940000155415	ENSGT00940000159601	ENSGT00940000154649.A	ENSGT00940000159508	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00940000156124.d	ENSGT00440000035348	ENSGT00390000004190	ENSGT00940000154615	ENSGT00390000006670	ENSGT00940000155911
Osteoglossiformes	ANCESTRAL SPECIES	137	ENSGT00940000156403.b.h	ENSGT00940000154814.b.u	ENSGT00390000005388.a	ENSGT00940000160365.a	ENSGT00940000156403.b.g	ENSGT00940000154814.b.t	ENSGT00940000159750	ENSGT00940000159601.i	ENSGT00940000155415.ib	ENSGT00940000154649.A	ENSGT00940000180353	ENSGT00940000161214	ENSGT00940000157309.b	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00390000010760.e.b	ENSGT00940000156189	ENSGT00940000160790	ENSGT00990000205171	ENSGT00940000181675	ENSGT00940000164836	ENSGT00390000005508.a	ENSGT00390000009067	ENSGT00940000165434	ENSGT00940000153972.C
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	20	ENSSFOG00015017243	ENSSFOG00015028347	ENSSFOG00015032830	ENSSFOG00015031648	ENSSFOG00015027594	ENSSFOG00015005081	rpap3 (ENSSFOG00015030819) #22	atp23 (ENSSFOG00015031983)	lrig3 (ENSSFOG00015010503)	ENSSFOG00015010647	ETV6 (ENSSFOG00015010592)	ENSSFOG00015028488	zgc:165507 (ENSSFOG00015010553)	lrig3 (ENSSFOG00015032543)	atp23 (ENSSFOG00015032674)	rpap3 (ENSSFOG00015010461) #22	ENSSFOG00015010361	ENSSFOG00015024367	ENSSFOG00015024743	ENSSFOG00015031103	ENSSFOG00015024828	ENSSFOG00015033316	ENSSFOG00015030407	ENSSFOG00015031872	ENSSFOG00015032189	ENSSFOG00015028918	ENSSFOG00015027762	si:dkey-14d8.7 (ENSSFOG00015013829)	mapk12b (ENSSFOG00015013781)	ENSSFOG00015025380	mapk11 (ENSSFOG00015013508)
Asian bonytongue	MODERN SPECIES	20	ENSSFOG00015033316	ENSSFOG00015024828	ENSSFOG00015031103	ENSSFOG00015024743	ENSSFOG00015024367	ENSSFOG00015010361	rpap3 (ENSSFOG00015010461) #22	atp23 (ENSSFOG00015032674)	lrig3 (ENSSFOG00015032543)	zgc:165507 (ENSSFOG00015010553)	ENSSFOG00015028488	ETV6 (ENSSFOG00015010592)	ENSSFOG00015010647	lrig3 (ENSSFOG00015010503)	atp23 (ENSSFOG00015031983)	rpap3 (ENSSFOG00015030819) #22	ENSSFOG00015005081	ENSSFOG00015027594	ENSSFOG00015031648	ENSSFOG00015032830	ENSSFOG00015028347	ENSSFOG00015017243	ENSSFOG00015032787	ENSSFOG00015027127	ENSSFOG00015016638	ENSSFOG00015024250	ENSSFOG00015028790	ENSSFOG00015016825	ENSSFOG00015030791	ENSSFOG00015031669	ENSSFOG00015030329
P. kingsleyae	MODERN SPECIES	147	lrp6 (ENSPKIG00000018805)	borcs5 (ENSPKIG00000018764)	crebl2 (ENSPKIG00000018745)	gpr19 (ENSPKIG00000018733)	eps8a (ENSPKIG00000018632)	PTPRO (ENSPKIG00000018474)	si:cabz01085950.1 (ENSPKIG00000018418)	TIMP3 (ENSPKIG00000018394)	ENSPKIG00000018305	ENSPKIG00000018261	si:ch73-252i11.1 (ENSPKIG00000018215)	ETV6 (ENSPKIG00000018189)	TAFA3 (ENSPKIG00000018157)	lrig3 (ENSPKIG00000018113)	atp23 (ENSPKIG00000018089)	rpap3 (ENSPKIG00000018036) #22	ENSPKIG00000018003	ENSPKIG00000017968	ENSPKIG00000017949	mapk12b (ENSPKIG00000017916)	mapk11 (ENSPKIG00000017863)	ENSPKIG00000017831	ENSPKIG00000017808	selenoo1 (ENSPKIG00000017791)	trabd (ENSPKIG00000017773)	ENSPKIG00000017742	panx2 (ENSPKIG00000017709)	ENSPKIG00000017687	ENSPKIG00000017675	ENSPKIG00000017658	ENSPKIG00000017627
Clupeocephala	ANCESTRAL SPECIES	46	ENSGT00940000157164	ENSGT00390000005388	ENSGT00940000160365	ENSGT00950000182937.B.b	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00940000159750	ENSGT00940000155415	ENSGT00940000159601	ENSGT00940000154649.A	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00390000010760.e.b	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00990000205171	ENSGT00980000200490	ENSGT00940000164836	ENSGT00390000005508.a.b	ENSGT00940000165434	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992
Otomorpha	ANCESTRAL SPECIES	127	ENSGT00940000157164	ENSGT00390000005388	ENSGT00940000160365	ENSGT00950000182937.B.b	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00940000159750	ENSGT00940000155415	ENSGT00940000159601	ENSGT00940000154649.A	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00390000010760.e.b	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00990000205171	ENSGT00980000200490	ENSGT00940000164836	ENSGT00390000005508.a.b	ENSGT00940000165434	ENSGT00400000022326.b.a.a	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992
Otophysi	ANCESTRAL SPECIES	119	ENSGT00940000157164	ENSGT00390000005388	ENSGT00940000160365	ENSGT00950000182937.B.b	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00940000159750	ENSGT00940000155415	ENSGT00940000159601	ENSGT00940000154649.A	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00390000010760.e.b	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00990000205171	ENSGT00980000200490	ENSGT00940000164836	ENSGT00390000005508.a.b	ENSGT00940000165434	ENSGT00400000022326.b.a.a	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992
Characiphysae	ANCESTRAL SPECIES	62	ENSGT00940000157164	ENSGT00390000005388	ENSGT00940000160365	ENSGT00950000182937.B.b	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00940000159750	ENSGT00940000155415	ENSGT00940000159601	ENSGT00940000154649.A	ENSGT00940000159508	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00940000164836	ENSGT00390000005508.a.b	ENSGT00940000165434	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992
Characiphysae_b	ANCESTRAL SPECIES	31	ENSGT00940000157164	ENSGT00390000005388	ENSGT00940000160365	ENSGT00950000182937.B.b	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00940000159750	ENSGT00940000159601	ENSGT00940000155415	ENSGT00940000154649.A	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00940000164836	ENSGT00390000005508.a.b	ENSGT00940000165434	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01070000254199	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00390000006791	ENSGT00390000004237.i	ENSGT00990000203615.a.a.b	ENSGT00940000156680.b	ENSGT01020000230394.e.a.a.a.a.b
Characoidei	ANCESTRAL SPECIES	167	ENSGT00940000158990	ENSGT00940000157164	ENSGT00390000005388	ENSGT00940000160365	ENSGT00950000182937.B.b	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00940000159750	ENSGT00940000155415	ENSGT00940000159601	ENSGT00940000154649.A	ENSGT00940000159508	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00990000205171	ENSGT00980000200490	ENSGT00530000063540.b	ENSGT00940000153744.B	ENSGT00390000009992	ENSGT01070000254199
Red-bellied piranha	MODERN SPECIES	1463															ENSPNAG00000006047	rpap3 (ENSPNAG00000024407) #22
Mexicana tetra	MODERN SPECIES	22	SYN3 (ENSAMXG00000034691)	TIMP3 (ENSAMXG00000031361)	ENSAMXG00000036744	ENSAMXG00000000821	ENSAMXG00000031638	ENSAMXG00000031050	si:ch73-252i11.1 (ENSAMXG00000018396)	ETV6 (ENSAMXG00000040855)	ENSAMXG00000029519	ENSAMXG00000043379	ENSAMXG00000018428	ENSAMXG00000037978	zgc:165507 (ENSAMXG00000019808)	lrig3 (ENSAMXG00000019794)	atp23 (ENSAMXG00000033585)	rpap3 (ENSAMXG00000034300) #22	mapk12b (ENSAMXG00000019730)	mapk11 (ENSAMXG00000034648)	ENSAMXG00000031346	ENSAMXG00000044083	ENSAMXG00000036247	ENSAMXG00000033539	ENSAMXG00000041258	selenoo2 (ENSAMXG00000019652)	ENSAMXG00000024941	ENSAMXG00000040198	apex1 (ENSAMXG00000034699)	osgep (ENSAMXG00000019619)	si:ch211-214j24.10 (ENSAMXG00000030271)	ENSAMXG00000030659	LINGO1 (ENSAMXG00000024883)
Electric eel	MODERN SPECIES	441										si:ch73-252i11.1 (ENSEEEG00000005656)	ETV6 (ENSEEEG00000005654)	ENSEEEG00000005652	zgc:165507 (ENSEEEG00000005650)	lrig3 (ENSEEEG00000005644)	atp23 (ENSEEEG00000005642)	rpap3 (ENSEEEG00000005627) #22	cradd (ENSEEEG00000005619)	socs2 (ENSEEEG00000005618)	ncaph2 (ENSEEEG00000005615)	sco2 (ENSEEEG00000005613)	PRR5 (ENSEEEG00000005611)
Channel catfish	MODERN SPECIES	10	gpr19 (ENSIPUG00000005016)	tbk1 (ENSIPUG00000005026)	eps8a (ENSIPUG00000005086)	PTPRO (ENSIPUG00000005156)	RERG (ENSIPUG00000005254)	SYN3 (ENSIPUG00000005283)	timp3 (ENSIPUG00000005296)	ENSIPUG00000005344	PARP12 (ENSIPUG00000005447)	si:ch73-252i11.1 (ENSIPUG00000005487)	etv6 (ENSIPUG00000005502)	fam19a2 (ENSIPUG00000005507)	slc16a7 (ENSIPUG00000005539)	lrig3 (ENSIPUG00000005553)	atp23 (ENSIPUG00000005590)	rpap3 (ENSIPUG00000005618) #22	mapk12b (ENSIPUG00000005633)	MAPK11 (ENSIPUG00000005670)	ENSIPUG00000005744	ENSIPUG00000005755	ENSIPUG00000005775	apex1 (ENSIPUG00000005799)	osgep (ENSIPUG00000005824)	si:ch211-214j24.10 (ENSIPUG00000005916)	ENSIPUG00000005924	ENSIPUG00000005927	ENSIPUG00000005956	shisal1a (ENSIPUG00000005983)	ENSIPUG00000005999	cmasa (ENSIPUG00000006011)	Kcnj8 (ENSIPUG00000006033)
Cyprinoidei	ANCESTRAL SPECIES	62						ENSGT00940000154814.b	ENSGT00940000159750	ENSGT00940000155415	ENSGT00940000159601	ENSGT00940000154649.A.u.a	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00940000157926	ENSGT01030000235060	ENSGT00530000064318	ENSGT00940000154479.a.a.b	ENSGT00430000031071	ENSGT00940000158940.a	ENSGT00390000007640.a	ENSGT01030000234583.a.a.c.a.b.b	ENSGT00940000158155	ENSGT00940000158917 #25	ENSGT00940000155486 #26	ENSGT00950000183205.b.a.b.a.b #28	ENSGT00390000016138.y #29	ENSGT00940000159389	ENSGT00390000018003.b
Cyprininae	ANCESTRAL SPECIES	608			ENSGT01030000234982	ENSGT00940000154649.A.u.a.b	ENSGT00940000154814.b.y.a.a	ENSGT00940000159750.f	ENSGT00940000159601.u.b	ENSGT00940000154649.A.u.a.a.b	ENSGT00940000159508.d	ENSGT00940000159882	ENSGT00940000157309.q.a	ENSGT00940000155644.b.b	ENSGT00940000157309.q.b	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00940000156403.b.j	ENSGT00950000182937.B.b.a
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	33	ENSCARG00000009222	ANO6 (ENSCARG00000009246) #30	pwp1 (ENSCARG00000009387)	ENSCARG00000009461	nudt4b (ENSCARG00000009484)	dnajc2 (ENSCARG00000009510)	PMPCB (ENSCARG00000009637)	med21 (ENSCARG00000010280)	TM7SF3 (ENSCARG00000010311)	ENSCARG00000010417	ENSCARG00000010438	naga (ENSCARG00000010483)	ENSCARG00000010513	lrig3 (ENSCARG00000011000)	atp23 (ENSCARG00000011063)	rpap3 (ENSCARG00000011086) #22	eps8a (ENSCARG00000011154)	tbk1 (ENSCARG00000012532)	crebl2 (ENSCARG00000012936)	dusp16 (ENSCARG00000012942)	rpl18a (ENSCARG00000012950)	pthlha (ENSCARG00000012983)	xpot (ENSCARG00000013010)	fbxo7 (ENSCARG00000013170)	ECHDC3 (ENSCARG00000013177)	ENSCARG00000013186	UPF2 (ENSCARG00000013221)	ENSCARG00000013573	mtpn (ENSCARG00000013578)	chrm2a (ENSCARG00000013582)	ptn (ENSCARG00000013586)
Goldfish	MODERN SPECIES	21	RASSF3 (ENSCARG00000067123)	ENSCARG00000067118	sim1b (ENSCARG00000067109)	ENSCARG00000066996	naga (ENSCARG00000066959)	PTPRO (ENSCARG00000065647)	si:cabz01085950.1 (ENSCARG00000065546)	TIMP3 (ENSCARG00000065525)	ENSCARG00000065492	ENSCARG00000065482	ETV6 (ENSCARG00000065438)	ENSCARG00000065434	zgc:165507 (ENSCARG00000065427)	lrig3 (ENSCARG00000065421)	atp23 (ENSCARG00000065408)	rpap3 (ENSCARG00000065349) #22	eps8a (ENSCARG00000064257)	tbk1 (ENSCARG00000064133)	ENSCARG00000064071	ANO6 (ENSCARG00000063575) #30	mrpl42 (ENSCARG00000063485)	ENSCARG00000063345	ENSCARG00000063307	znf800b (ENSCARG00000063271)	ATXN7L1 (ENSCARG00000063251)	SYPL1 (ENSCARG00000063241)	NAMPT (ENSCARG00000062094)	ENSCARG00000062037	ENSCARG00000061995	pik3cg (ENSCARG00000061947)	ENSCARG00000061642
Cyprininae_a	ANCESTRAL SPECIES	230		ENSGT01030000234982	ENSGT00940000154649.A.u.a.b	ENSGT00940000154814.b.y.a.a	ENSGT00940000159750.f	ENSGT00940000159601.u.b	ENSGT00940000154649.A.u.a.a.b	ENSGT00940000159508.d	ENSGT00940000159882	ENSGT00940000157309.q.a	ENSGT00940000157098.e.b	ENSGT00940000155644.b.b	ENSGT00940000157309.q.b	ENSGT00940000157098.e.a	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00940000156403.b.j	ENSGT00950000182937.B.b.a	ENSGT00940000160365.c.a	ENSGT00390000005388	ENSGT00940000157164.n.b	ENSGT00390000015797.j	ENSGT00390000004933.k.a.b	ENSGT00390000015797.i.b	ENSGT00390000004933.k.a.a	ENSGT00390000007890	ENSGT00940000155911	ENSGT00390000006670.h	ENSGT00940000161214	ENSGT00940000159508.c	ENSGT00940000154649.A.u.a.a.a
Golden-line barbel	MODERN SPECIES	759										ENSSGRG00000051312	ENSSGRG00000051307	ETV6 (ENSSGRG00000051299)	ENSSGRG00000051298	lrig3 (ENSSGRG00000051295)	atp23 (ENSSGRG00000051292)	rpap3 (ENSSGRG00000051291) #22	eps8a (ENSSGRG00000050913)	tbk1 (ENSSGRG00000050223)	gpr19 (ENSSGRG00000050205)	crebl2 (ENSSGRG00000050204)	dusp16 (ENSSGRG00000050202)	pthlha (ENSSGRG00000050201)	xpot (ENSSGRG00000049674)	fbxo7 (ENSSGRG00000049671)	ECHDC3 (ENSSGRG00000049669)	ENSSGRG00000049667	ENSSGRG00000049665	UPF2 (ENSSGRG00000049649)	ENSSGRG00000049647	mtpn (ENSSGRG00000049646)	chrm2a (ENSSGRG00000049644)
Zebrafish	MODERN SPECIES	19	rtcb (ENSDARG00000101047)	fbxo7 (ENSDARG00000099833)	ost4 (ENSDARG00000096118)	agbl5 (ENSDARG00000045900)	tmem214 (ENSDARG00000016968)	mapre3b (ENSDARG00000102878)	dpysl5b (ENSDARG00000059311)	sobpb (ENSDARG00000017386)	ENSDARG00000045898	ENSDARG00000006060	ENSDARG00000113105	mrap2b (ENSDARG00000103050)	ripply2 (ENSDARG00000070535)	sim1b (ENSDARG00000013789)	atp23 (ENSDARG00000063686)	rpap3 (ENSDARG00000087962) #22	naga (ENSDARG00000099313)	ENSDARG00000103102	mtpn (ENSDARG00000104018)	ENSDARG00000102157	chrm2a (ENSDARG00000098612)	ptn (ENSDARG00000102340)	ENSDARG00000111388	ENSDARG00000025601	ENSDARG00000063672	slc38a4 (ENSDARG00000018149) #25	slc38a2 (ENSDARG00000045886) #26	ENSDARG00000045885 #28	arid2 (ENSDARG00000007413) #29	gas2l3 (ENSDARG00000045880)	fgfr1op2 (ENSDARG00000009657)
Clupeiformes	ANCESTRAL SPECIES	452							ENSGT00940000159601	ENSGT00940000155415	ENSGT00940000154649.A.s	ENSGT00940000154649.A.t	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22
Denticle herring	MODERN SPECIES	6	ENSDCDG00000033959	GSAP (ENSDCDG00000033946)	fgl2a (ENSDCDG00000033940)	ENSDCDG00000033938	TIMP3 (ENSDCDG00000033935)	SYN3 (ENSDCDG00000033869)	ENSDCDG00000033863	ENSDCDG00000033860	si:ch73-252i11.1 (ENSDCDG00000033858)	ENSDCDG00000033855	ENSDCDG00000033852	zgc:165507 (ENSDCDG00000033847)	lrig3 (ENSDCDG00000033612)	atp23 (ENSDCDG00000033598)	ENSDCDG00000033597	rpap3 (ENSDCDG00000033517) #22	ENSDCDG00000033505	KCNA5 (ENSDCDG00000033503)	KCNA1 (ENSDCDG00000033502)	ENSDCDG00000033499	ARHGAP8 (ENSDCDG00000033497)	ENSDCDG00000033495	nup50 (ENSDCDG00000033492)	kiaa0930 (ENSDCDG00000033462)	fbxo7 (ENSDCDG00000033461)	rtcb (ENSDCDG00000033460)	xpot (ENSDCDG00000033451)	rpl18a (ENSDCDG00000033439)	pthlha (ENSDCDG00000033436)	ENSDCDG00000033434	ENSDCDG00000033431
Atlantic herring	MODERN SPECIES	7	ENSCHAG00000021158	mcat (ENSCHAG00000021150)	ENSCHAG00000021147	ENSCHAG00000021139	ENSCHAG00000021131	slc26a4 (ENSCHAG00000020573)	slc26a3.1 (ENSCHAG00000019565)	si:dkey-222f8.3 (ENSCHAG00000019390) ##21	tnnt2c (ENSCHAG00000019347)	ENSCHAG00000019339	cry1a (ENSCHAG00000019111)	btbd11a (ENSCHAG00000018552)	ENSCHAG00000018506	ENSCHAG00000018478	ENSCHAG00000018460	rpap3 (ENSCHAG00000018420) #22	ENSCHAG00000018393	ENSCHAG00000018365	ENSCHAG00000018343	ENSCHAG00000018339	ENSCHAG00000018277	pwp2h (ENSCHAG00000018030)	ENSCHAG00000018002	ENSCHAG00000017986	RAB9A (ENSCHAG00000017977)	gpm6ba (ENSCHAG00000017841)	gemin8 (ENSCHAG00000017828)	PRPS2 (ENSCHAG00000017630)	ENSCHAG00000017610	MSL3 (ENSCHAG00000017515)	ARHGAP6 (ENSCHAG00000017388)
Euteleosteomorpha	ANCESTRAL SPECIES	236							ENSGT00940000159750	ENSGT00940000155415	ENSGT00940000159601	ENSGT00940000154649.A	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00770000121400	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00990000205171	ENSGT00980000200490	ENSGT01070000253775.a.d.a.a.a.a	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00510000047522	ENSGT00390000009899.b.m	ENSGT00940000155263	ENSGT00940000154380.a.a.b
Protacanthopterygii	ANCESTRAL SPECIES	23	ENSGT00390000002730.e.b	ENSGT00950000183113.b.b.c.b	ENSGT00940000160161.e.a	ENSGT00940000159401.d.d	ENSGT00940000153414.A	ENSGT00940000157821.h.a	ENSGT00940000160821	ENSGT00940000163946.a	ENSGT00940000155180.b.b	ENSGT00940000165907	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00390000010760.e.a	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00990000205171	ENSGT00980000200490	ENSGT01070000253775.a.d.a.a.a.a	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00510000047522	ENSGT00390000009899.b.m	ENSGT00940000155263	ENSGT00940000154380.a.a.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	405													ENSGT00940000157309.c	ENSGT00940000157098.j	ENSGT00390000010948.k	ENSGT00940000156749.i #22	ENSGT00390000010760.e.a.a.a	ENSGT00940000156189.a.b.e	ENSGT00940000160790.c.a.b	ENSGT00990000205171	ENSGT01070000253775.a.d.a.a.a.a.b	ENSGT01070000253775.a.d.a.a.a.b.e	ENSGT00510000047522.m.b	ENSGT00390000009899.b.m.e	ENSGT00940000155263.j	ENSGT00940000154380.a.a.b.b	ENSGT00940000159729.k.a	ENSGT00940000155591.i.a	ENSGT00530000064216	ENSGT01020000230401.b.a.f.b	ENSGT00940000158078.h
Salmoninae_a	ANCESTRAL SPECIES	11	ENSGT00940000160161.e.a.m.b.b	ENSGT00940000160161.e.a.m.b.a	ENSGT00940000159401.d.d.b	ENSGT00940000153414.A.e.b	ENSGT00940000157821.h.a.d	ENSGT00940000160821.c	ENSGT00940000163946.a.f	ENSGT00940000155180.b.b.f	ENSGT00940000165907.e	ENSGT00940000154649.A.r.b.a.a	ENSGT00940000159508.e	ENSGT00940000159882.k.a	ENSGT00940000157309.c	ENSGT00940000157098.j	ENSGT00390000010948.k	ENSGT00940000156749.i #22	ENSGT00390000010760.e.a.a.a	ENSGT00940000156189.a.b.e	ENSGT00940000160790.c.a.b	ENSGT00990000205171.b.b.b	ENSGT01070000253775.a.d.a.a.a.a.b	ENSGT01070000253775.a.d.a.a.a.b.e	ENSGT00510000047522.m.b	ENSGT00390000009899.b.m.e	ENSGT00940000155263.j	ENSGT00940000154380.a.a.b.b	ENSGT00940000159729.k.a	ENSGT00940000155591.i.a	ENSGT00530000064216	ENSGT01020000230401.b.a.f.b	ENSGT00940000158078.h
Salmo	ANCESTRAL SPECIES	46	ENSGT00940000160161.e.a.m.b.a	ENSGT00940000159401.d.d.b	ENSGT00940000153414.A.e.b	ENSGT00940000157821.h.a.d	ENSGT00940000160821.d.a	ENSGT00940000160821.c	ENSGT00940000163946.a.f	ENSGT00940000155180.b.b.f	ENSGT00940000165907.e	ENSGT00940000154649.A.r.b.a.a	ENSGT00940000159508.e	ENSGT00940000159882.k.a	ENSGT00940000157309.c	ENSGT00940000157098.j	ENSGT00390000010948.k	ENSGT00940000156749.i #22	ENSGT00390000010760.e.a.b	ENSGT00940000156189.a.b.e	ENSGT00940000160790.c.a.b	ENSGT00990000205171.b.b.b	ENSGT01030000236439	ENSGT00990000205171.a	ENSGT00980000200490.b.a	ENSGT01070000253775.a.d.a.a.a.a.b	ENSGT01070000253775.a.d.a.a.a.b.e	ENSGT00510000047522.m.b	ENSGT00390000009899.b.m.e	ENSGT00940000155263.j	ENSGT00940000154380.a.a.b.b	ENSGT00940000159729.k.a	ENSGT00530000064216
Atlantic salmon	MODERN SPECIES	8	GALNT8 (ENSSSAG00000002843)	DYRK4 (ENSSSAG00000002634)	RAD51AP1 (ENSSSAG00000046281)	FGF6 (ENSSSAG00000105006)	ENSSSAG00000046118	FGF23 (ENSSSAG00000100656)	cl005 (ENSSSAG00000046094)	CCND2 (ENSSSAG00000046071)	ENSSSAG00000046065	prp12 (ENSSSAG00000045959)	ENSSSAG00000046017	ENSSSAG00000093946	SLC16A7 (ENSSSAG00000092648)	ENSSSAG00000045467	ATP23 (ENSSSAG00000045406)	rpap3 (ENSSSAG00000045357) #22	ENSSSAG00000102198	ENSSSAG00000045087	ENSSSAG00000078529	ENSSSAG00000045071	ENSSSAG00000044845	ENSSSAG00000085864	ENSSSAG00000044824	ENSSSAG00000116379	slc26a4 (ENSSSAG00000043618)	ENSSSAG00000112935	cbll1 (ENSSSAG00000009994)	PPP6R2 (ENSSSAG00000009470)	ENSSSAG00000007565	ADM2 (ENSSSAG00000109452)	ENSSSAG00000007491
River trout	MODERN SPECIES	34	GALNT8 (ENSSTUG00000042923)	DYRK4 (ENSSTUG00000043097)	rad51ap1 (ENSSTUG00000043364)	fgf6b (ENSSTUG00000043385)	fgf23 (ENSSTUG00000043394)	fgf23 (ENSSTUG00000043411)	ENSSTUG00000043422	ccnd2b (ENSSTUG00000043443)	ETV6 (ENSSTUG00000043463)	ENSSTUG00000043488	ENSSTUG00000043511	ENSSTUG00000043532	zgc:165507 (ENSSTUG00000043541)	lrig3 (ENSSTUG00000043589)	atp23 (ENSSTUG00000043859)	rpap3 (ENSSTUG00000043885) #22	mapk12b (ENSSTUG00000043923)	mapk11 (ENSSTUG00000044058)	ENSSTUG00000044116	ENSSTUG00000044118	ENSSTUG00000044123	ENSSTUG00000044130	ENSSTUG00000044135	slc26a4 (ENSSTUG00000044162)	ENSSTUG00000045779	cbll1 (ENSSTUG00000046223)	ppp6r2a (ENSSTUG00000046287)	sbf1 (ENSSTUG00000047272)	ADM2 (ENSSTUG00000050087)	ENSSTUG00000050088	ENSSTUG00000050097
Oncorhynchus	ANCESTRAL SPECIES	22	ENSGT00940000160161.e.a.m.b.b	ENSGT00940000160161.e.a.m.b.a	ENSGT00940000159401.d.d.b	ENSGT00940000153414.A.e.b	ENSGT00940000157821.h.a.d	ENSGT00940000160821.c	ENSGT00940000163946.a.f	ENSGT00940000155180.b.b.f	ENSGT00940000165907.e	ENSGT00940000154649.A.r.b.a.a	ENSGT00940000159508.e	ENSGT00940000159882.k.a	ENSGT00940000157309.c	ENSGT00940000157098.j	ENSGT00390000010948.k.b	ENSGT00940000156749.i #22	ENSGT00390000010760.e.a.a.a	ENSGT00940000156189.a.b.e	ENSGT00940000160790.c.a.b	ENSGT01100000263473.a.b.g.a.a.a.a.a.b.a.a	ENSGT00940000181675.a.a	ENSGT01070000253775.a.d.a.a.a.a.b	ENSGT01070000253775.a.d.a.a.a.b.e	ENSGT00510000047522.m.b	ENSGT00390000009899.b.m.e	ENSGT00940000155263.j	ENSGT00940000154380.a.a.b.b	ENSGT00940000159729.k.a.c	ENSGT00940000155591.i.a	ENSGT00530000064216	ENSGT00940000158078.h
Rainbow trout	MODERN SPECIES	6	ENSOMYG00000037323	ENSOMYG00000050284	ENSOMYG00000037212	FGF6 (ENSOMYG00000051544)	ENSOMYG00000037173	RAD51AP1 (ENSOMYG00000037137)	ENSOMYG00000037078	CCND2 (ENSOMYG00000037066)	ENSOMYG00000037058	ENSOMYG00000037027	ENSOMYG00000037018	ENSOMYG00000037004	SLC16A7 (ENSOMYG00000036989)	ENSOMYG00000036180	ATP23 (ENSOMYG00000036060)	ENSOMYG00000036038 #22	ENSOMYG00000054232	ENSOMYG00000035999	ENSOMYG00000035928	ENSOMYG00000035899	ENSOMYG00000035893	ENSOMYG00000008094	slc26a4 (ENSOMYG00000035852)	ENSOMYG00000034202	cbll1 (ENSOMYG00000033978)	PPP6R2 (ENSOMYG00000033276)	ENSOMYG00000032305	ADM2 (ENSOMYG00000031832)	ENSOMYG00000053854	ENSOMYG00000059751	ENSOMYG00000031807
Oncorhynchus_a	ANCESTRAL SPECIES	31	ENSGT00940000160161.e.a.m.b.b	ENSGT00940000159401.d.d.b	ENSGT00940000153414.A.e.b	ENSGT00940000157821.h.a.d	ENSGT00940000160821.c.a	ENSGT00940000160821.c.b	ENSGT00940000163946.a.f	ENSGT00940000155180.b.b.f.a	ENSGT00940000165907.e	ENSGT00940000154649.A.r.b.a.a	ENSGT00940000159508.e	ENSGT00940000159882.k.a	ENSGT00940000157309.c	ENSGT00940000157098.j	ENSGT00390000010948.k.b	ENSGT00940000156749.i #22	ENSGT00390000010760.e.a.a.b	ENSGT00940000156189.a.b.f	ENSGT00940000160790.c.b	ENSGT00990000205171.b.b.a	ENSGT00940000181675.a.a	ENSGT01070000253775.a.d.a.a.a.a.b	ENSGT01070000253775.a.d.a.a.a.b.e	ENSGT00510000047522.m.b	ENSGT00390000009899.b.m.e	ENSGT00940000155263.j	ENSGT00940000154380.a.a.b.b	ENSGT00940000159729.k.a.c	ENSGT00940000155591.i.a	ENSGT00530000064216	ENSGT00940000158078.h
Chinook salmon	MODERN SPECIES	8	GALNT8 (ENSOTSG00005004107)	DYRK4 (ENSOTSG00005002455)	rad51ap1 (ENSOTSG00005002447)	fgf6b (ENSOTSG00005002443)	fgf23 (ENSOTSG00005002442)	fgf23 (ENSOTSG00005002387)	ENSOTSG00005002207	ccnd2b (ENSOTSG00005002206)	ENSOTSG00005002205	ENSOTSG00005002202	ETV6 (ENSOTSG00005002192)	ENSOTSG00005002182	zgc:165507 (ENSOTSG00005002177)	lrig3 (ENSOTSG00005002161)	atp23 (ENSOTSG00005002154)	rpap3 (ENSOTSG00005002130) #22	ENSOTSG00005001968	mapk12b (ENSOTSG00005001954)	mapk11 (ENSOTSG00005024837)	ENSOTSG00005024834	ENSOTSG00005024829	ENSOTSG00005024827	slc26a4 (ENSOTSG00005024761)	SLC26A3 (ENSOTSG00005021064)	cbll1 (ENSOTSG00005021017)	ppp6r2a (ENSOTSG00005020702)	sbf1 (ENSOTSG00005018573)	ADM2 (ENSOTSG00005018540)	ankrd16 (ENSOTSG00005018539)	gdi2 (ENSOTSG00005017570)	ENSOTSG00005017562
Coho salmon	MODERN SPECIES	10	DYRK4 (ENSOKIG00005005894)	rad51ap1 (ENSOKIG00005006131)	fgf6b (ENSOKIG00005006159)	fgf23 (ENSOKIG00005006182)	ENSOKIG00005006202	ENSOKIG00005006263	ccnd2b (ENSOKIG00005006286)	ENSOKIG00005006300	ENSOKIG00005006314	ENSOKIG00005006336	ETV6 (ENSOKIG00005006378)	ENSOKIG00005006390	SLC16A7 (ENSOKIG00005006397)	lrig3 (ENSOKIG00005006440)	atp23 (ENSOKIG00005006635)	rpap3 (ENSOKIG00005006662) #22	ENSOKIG00005006716	mapk12b (ENSOKIG00005006765)	mapk11 (ENSOKIG00005007146)	ENSOKIG00005007500	ENSOKIG00005007506	ENSOKIG00005007519	slc26a4 (ENSOKIG00005007552)	SLC26A3 (ENSOKIG00005008073)	cbll1 (ENSOKIG00005010759)	ppp6r2a (ENSOKIG00005010832)	sbf1 (ENSOKIG00005011652)	ADM2 (ENSOKIG00005022161)	ENSOKIG00005022170	GSN (ENSOKIG00005022265)	ENSOKIG00005024336
Huchen	MODERN SPECIES	351													zgc:165507 (ENSHHUG00000047601)	lrig3 (ENSHHUG00000047604)	atp23 (ENSHHUG00000047736)	rpap3 (ENSHHUG00000047751) #22	ENSHHUG00000047767	mapk12b (ENSHHUG00000047783)	mapk11 (ENSHHUG00000047842)	ENSHHUG00000047903	ENSHHUG00000047911	ENSHHUG00000047914	slc26a4 (ENSHHUG00000047922)	SLC26A3 (ENSHHUG00000047960)	cbll1 (ENSHHUG00000047999)	ppp6r2a (ENSHHUG00000048004)	sbf1 (ENSHHUG00000048036)	ADM2 (ENSHHUG00000048522)	ENSHHUG00000048523	gsnb (ENSHHUG00000048529)	hsp90b1 (ENSHHUG00000048594)
Salmoninae	ANCESTRAL SPECIES	81	ENSGT00390000002730.e.b.c	ENSGT00950000183113.b.b.c.b.k	ENSGT00940000160161.e.a.m.a	ENSGT00940000159401.d.d.a	ENSGT00940000153414.A.e.a	ENSGT00940000157821.h.a.c	ENSGT00940000160821.d.b	ENSGT00940000163946.a.e	ENSGT00940000155180.b.b.e	ENSGT00940000154649.A.r.b.a.b	ENSGT00940000159508.f	ENSGT00940000159882.k.b	ENSGT00940000157309.d	ENSGT00940000157098.i	ENSGT00390000010948.l	ENSGT00940000156749.j #22	ENSGT00390000010760.e.a.a.b	ENSGT00940000156189.a.b.f	ENSGT00940000160790.c.a.a	ENSGT00980000200490	ENSGT00940000169061	ENSGT00940000153969.a.e	ENSGT00950000182994.B.a.b.ob.a	ENSGT00940000160326.c.b.c.a	ENSGT00940000160326.c.a.b	ENSGT00940000155849.h.d	ENSGT00390000001702.o	ENSGT00730000111314.e	ENSGT00390000009047.b.y.a.a	ENSGT00940000154917.gb.a.a	ENSGT00940000160180
Salmoninae_a	ANCESTRAL SPECIES	75	ENSGT00950000183113.b.b.c.b.k	ENSGT00940000160161.e.a.m.a	ENSGT00940000159401.d.d.a	ENSGT00940000153414.A.e.a	ENSGT00940000157821.h.a.c	ENSGT00940000160821.d.b.c	ENSGT00940000163946.a.e	ENSGT00940000155180.b.b.e	ENSGT00940000165907.f	ENSGT00940000154649.A.r.b.a.b	ENSGT00940000159508.f	ENSGT00940000159882.k.b	ENSGT00940000157309.d	ENSGT00940000157098.i	ENSGT00390000010948.l	ENSGT00940000156749.j #22	ENSGT00390000010760.e.a.a.b	ENSGT00940000156189.a.b.f	ENSGT00940000160790.c.b	ENSGT00990000205171.b.b.a	ENSGT00980000200490.a	ENSGT00940000169061	ENSGT00940000181675.b	ENSGT01070000253775.a.d.a.a.a.a.a	ENSGT01070000253775.a.d.a.a.a.b.f	ENSGT00510000047522.m.a	ENSGT00390000009899.b.m.f	ENSGT00940000155263.i	ENSGT00940000154380.a.a.b.a	ENSGT00940000159729.k.b	ENSGT00940000155591.i.b
Salmo	ANCESTRAL SPECIES	25	ENSGT00940000160161.e.a.m.a.c	ENSGT00940000159401.d.d.a	ENSGT00940000153414.A.e.a	ENSGT00940000157821.h.a.c	ENSGT00940000160821.d.b.d	ENSGT00940000160821.d.b.c	ENSGT00940000163946.a.e	ENSGT00940000155180.b.b.e	ENSGT00940000165907.f	ENSGT00940000154649.A.r.b.a.b	ENSGT00940000159508.f	ENSGT00940000159882.k.b	ENSGT00940000157309.d	ENSGT00940000157098.i	ENSGT00390000010948.l	ENSGT00940000156749.j #22	ENSGT00770000121400	ENSGT00940000156189.a.b.f	ENSGT00940000160790.c.a.a	ENSGT00990000205171.b.b.a	ENSGT01100000263473.a.b.g.a.a.a.a.a.b.a.a	ENSGT00940000181675.b	ENSGT01070000253775.a.d.a.a.a.a.a	ENSGT01070000253775.a.d.a.a.a.b.f	ENSGT00510000047522.m.a	ENSGT00390000009899.b.m.f	ENSGT00940000155263.i	ENSGT00940000154380.a.a.b.a	ENSGT00940000159729.k.b	ENSGT00940000155591.i.b	ENSGT01020000230401.b.a.f.a
River trout	MODERN SPECIES	38	GALNT8 (ENSSTUG00000018184)	DYRK4 (ENSSTUG00000018072)	rad51ap1 (ENSSTUG00000018041)	fgf6b (ENSSTUG00000018022)	fgf23 (ENSSTUG00000017999)	fgf23 (ENSSTUG00000017992)	tigarb (ENSSTUG00000017961)	CCND2 (ENSSTUG00000017954)	ENSSTUG00000017937	ENSSTUG00000017923	ETV6 (ENSSTUG00000017900)	ENSSTUG00000017894	zgc:165507 (ENSSTUG00000017877)	lrig3 (ENSSTUG00000017707)	atp23 (ENSSTUG00000017685)	rpap3 (ENSSTUG00000017642) #22	mapk12b (ENSSTUG00000017550)	mapk11 (ENSSTUG00000017452)	ENSSTUG00000017442	ENSSTUG00000017427	ENSSTUG00000017419	slc26a4 (ENSSTUG00000016140)	ENSSTUG00000013930	cbll1 (ENSSTUG00000013873)	ppp6r2a (ENSSTUG00000010991)	sbf1 (ENSSTUG00000008424)	ADM2 (ENSSTUG00000008357)	ENSSTUG00000008347	ENSSTUG00000008335	gsnb (ENSSTUG00000003999)	ENSSTUG00000003763
Atlantic salmon	MODERN SPECIES	26	DYRK4 (ENSSSAG00000046312)	rad51ap1 (ENSSSAG00000002591)	FGF6 (ENSSSAG00000108638)	FGF23 (ENSSSAG00000002565)	FGF23 (ENSSSAG00000115518)	ENSSSAG00000002554	ccnd2 (ENSSSAG00000100349)	ENSSSAG00000002526	ENSSSAG00000002515	ENSSSAG00000082533	ENSSSAG00000002504	ENSSSAG00000002490	SLC16A7 (ENSSSAG00000091551)	ENSSSAG00000002443	ATP23 (ENSSSAG00000002404)	ENSSSAG00000002360 #22	ENSSSAG00000002331	ENSSSAG00000002279	ENSSSAG00000044872	ENSSSAG00000091998	ENSSSAG00000078499	ENSSSAG00000078488	ENSSSAG00000090037	ENSSSAG00000089719	ENSSSAG00000091313	ENSSSAG00000087452	ENSSSAG00000112771	ENSSSAG00000102657	ENSSSAG00000104245	ENSSSAG00000112739	ENSSSAG00000090407
Oncorhynchus	ANCESTRAL SPECIES	9	ENSGT00950000183113.b.b.c.b.k	ENSGT00940000160161.e.a.m.a.a	ENSGT00940000159401.d.d.a	ENSGT00940000153414.A.e.a	ENSGT00940000157821.h.a.c	ENSGT00940000160821.d.b.c	ENSGT00940000163946.a.e	ENSGT00940000155180.b.b.e	ENSGT00940000165907.f	ENSGT00940000154649.A.r.b.a.b	ENSGT00940000159508.f	ENSGT00940000159882.k.b.a	ENSGT00940000157309.d	ENSGT00940000157098.i	ENSGT00390000010948.l	ENSGT00940000156749.j #22	ENSGT01100000263479.A	ENSGT00390000010760.e.a.a.b	ENSGT00940000156189.a.b.f	ENSGT00940000160790.c.b	ENSGT00990000205171.b.b.a	ENSGT00980000200490.a	ENSGT00940000169061	ENSGT00940000181675.b	ENSGT01070000253775.a.d.a.a.a.a.a	ENSGT01070000253775.a.d.a.a.a.b.f	ENSGT00510000047522.m.a	ENSGT00390000009899.b.m.f	ENSGT00940000155263.i	ENSGT00940000154380.a.a.b.a	ENSGT00940000159729.k.a.d
Oncorhynchus_a	ANCESTRAL SPECIES	64	ENSGT00950000183113.b.b.c.b.k	ENSGT00940000160161.e.a.m.a.a	ENSGT00940000159401.d.d.a	ENSGT00940000153414.A.e.a	ENSGT00940000157821.h.a.c	ENSGT00940000160821.d.b.c	ENSGT00940000163946.a.e	ENSGT00940000155180.b.b.e	ENSGT00940000165907.f	ENSGT00940000154649.A.r.b.a.b	ENSGT00940000159508.f	ENSGT00940000159882.k.b.a	ENSGT00940000157309.d	ENSGT00940000157098.i	ENSGT00390000010948.l	ENSGT00940000156749.j #22
Chinook salmon	MODERN SPECIES	6	GALNT8 (ENSOTSG00005007620)	ENSOTSG00005007626	DYRK4 (ENSOTSG00005007630)	rad51ap1 (ENSOTSG00005008488)	fgf6b (ENSOTSG00005008490)	fgf23 (ENSOTSG00005008491)	tigarb (ENSOTSG00005008492)	CCND2 (ENSOTSG00005008493)	ENSOTSG00005008495	ENSOTSG00005008497	ETV6 (ENSOTSG00005008498)	ENSOTSG00005008499	zgc:165507 (ENSOTSG00005008500)	lrig3 (ENSOTSG00005008501)	atp23 (ENSOTSG00005008502)	rpap3 (ENSOTSG00005008503) #22	ENSOTSG00005008531	mapk12b (ENSOTSG00005008538)	mapk11 (ENSOTSG00005008618)	net1 (ENSOTSG00005008638)	mkln1 (ENSOTSG00005008660)	podxl (ENSOTSG00005008665)	ENSOTSG00005008667	ENSOTSG00005008669	ENSOTSG00005008670	ENSOTSG00005008679	ENSOTSG00005008681	ENSOTSG00005008682	gata3 (ENSOTSG00005008685)	gata3 (ENSOTSG00005008687)	atp5f1c (ENSOTSG00005008690)
Coho salmon	MODERN SPECIES	29	GALNT8 (ENSOKIG00005030969)	DYRK4 (ENSOKIG00005031007)	rad51ap1 (ENSOKIG00005031433)	FGF6 (ENSOKIG00005031468)	FGF23 (ENSOKIG00005031488)	tigarb (ENSOKIG00005031500)	CCND2 (ENSOKIG00005031509)	ENSOKIG00005031516	ENSOKIG00005031524	ETV6 (ENSOKIG00005031559)	ENSOKIG00005031582	zgc:165507 (ENSOKIG00005031593)	LRIG3 (ENSOKIG00005031619)	ATP23 (ENSOKIG00005031806)	ENSOKIG00005031848	ENSOKIG00005031876 #22	ENSOKIG00005032086	MAPK12 (ENSOKIG00005032134)	MAPK11 (ENSOKIG00005032579)	ENSOKIG00005032877	ENSOKIG00005032886	ENSOKIG00005032913	ENSOKIG00005032935	ENSOKIG00005032953	slc26a4 (ENSOKIG00005032970)	SLC26A3 (ENSOKIG00005033105)	cbll1 (ENSOKIG00005034236)	PPP6R2 (ENSOKIG00005034315)	SBF1 (ENSOKIG00005035256)	ADM2 (ENSOKIG00005043598)	ENSOKIG00005043613
Rainbow trout	MODERN SPECIES	13	GALNT8 (ENSOMYG00000026382)	GALNT8 (ENSOMYG00000026443)	DYRK4 (ENSOMYG00000005829)	rad51ap1 (ENSOMYG00000066957)	FGF6 (ENSOMYG00000006228)	FGF23 (ENSOMYG00000006277)	ENSOMYG00000006306	CCND2 (ENSOMYG00000006326)	ENSOMYG00000006379	ENSOMYG00000006418	ENSOMYG00000006527	ENSOMYG00000006590	SLC16A7 (ENSOMYG00000006617)	ENSOMYG00000006995	ATP23 (ENSOMYG00000007190)	ENSOMYG00000007324 #22	ENSOMYG00000007386	ENSOMYG00000007472	ENSOMYG00000007754	ENSOMYG00000007869	ENSOMYG00000061677	ENSOMYG00000008008	ENSOMYG00000008046	ENSOMYG00000008062	slc26a4 (ENSOMYG00000008353)	ENSOMYG00000009269	cbll1 (ENSOMYG00000011056)	PPP6R2 (ENSOMYG00000011133)	ENSOMYG00000011714	ADM2 (ENSOMYG00000020561)	ENSOMYG00000020565
Huchen	MODERN SPECIES	168	ADA2 (ENSHHUG00000022050)	GALNT8 (ENSHHUG00000022068)	DYRK4 (ENSHHUG00000022276)	rad51ap1 (ENSHHUG00000022304)	fgf6b (ENSHHUG00000022315)	fgf23 (ENSHHUG00000022327)	tigarb (ENSHHUG00000022359)	ccnd2b (ENSHHUG00000022366)	ENSHHUG00000022387	ENSHHUG00000022392	ETV6 (ENSHHUG00000022398)	ENSHHUG00000022424	zgc:165507 (ENSHHUG00000022429)	lrig3 (ENSHHUG00000022435)	atp23 (ENSHHUG00000022601)	rpap3 (ENSHHUG00000022615) #22	ENSHHUG00000022635	ENSHHUG00000022637	ENSHHUG00000022641	mapk12b (ENSHHUG00000022648)	mapk11 (ENSHHUG00000022674)	ENSHHUG00000022848	ENSHHUG00000022850
Northern pike	MODERN SPECIES	22	GALNT8 (ENSELUG00000003855)	DYRK4 (ENSELUG00000003899)	rad51ap1 (ENSELUG00000003944)	fgf6b (ENSELUG00000003959)	fgf23 (ENSELUG00000027201)	tigarb (ENSELUG00000003991)	ccnd2b (ENSELUG00000004013)	ENSELUG00000004034	si:ch73-252i11.1 (ENSELUG00000004066)	ENSELUG00000004091	ETV6 (ENSELUG00000004117)	ENSELUG00000004138	zgc:165507 (ENSELUG00000004160)	lrig3 (ENSELUG00000004212)	atp23 (ENSELUG00000004251)	rpap3 (ENSELUG00000004288) #22	ENSELUG00000004314	mapk12b (ENSELUG00000001606)	slc26a4 (ENSELUG00000004451)	mapk11 (ENSELUG00000004394)	slc26a3.1 (ENSELUG00000004480)	cbll1 (ENSELUG00000004495)	ppp6r2a (ENSELUG00000004548)	sbf1 (ENSELUG00000004779)	adm2a (ENSELUG00000027918)	ENSELUG00000004901	hsp90b1 (ENSELUG00000004974)	glt8d2 (ENSELUG00000005016)	ankrd16 (ENSELUG00000005028)	gdi2 (ENSELUG00000005059)	asb13a.1 (ENSELUG00000005082)
Acanthomorphata	ANCESTRAL SPECIES	30	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT01050000244850.A.a.o.b	ENSGT00940000159750	ENSGT00940000155415	ENSGT00940000159601	ENSGT00940000154649.A	ENSGT01030000234982	ENSGT00530000063472.a	ENSGT00940000164581.A.a.b	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00770000121400	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT01070000253775.a.d.a.a.a.b.g.b	ENSGT01070000253775.a.d.a.a.a.a	ENSGT01070000253775.a.d.a.a.a.b.g.a	ENSGT00510000047522	ENSGT00390000009899.b.m	ENSGT00940000155263	ENSGT00940000154380.a.a.b	ENSGT00940000158078	ENSGT00940000153969.a	ENSGT00950000182994.B.a.b	ENSGT00940000160592	ENSGT00940000160326.c.b
Euacanthomorphacea	ANCESTRAL SPECIES	18	ENSGT00940000154003.A	ENSGT01050000244850.C.b.v	ENSGT01050000244850.A.a.o.b	ENSGT00940000159750	ENSGT00940000155415	ENSGT00940000159601	ENSGT00940000154649.A	ENSGT01030000234982	ENSGT00530000063472.a	ENSGT00940000164581.A.a.b	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00770000121400	ENSGT00940000156189.a.b	ENSGT00940000160790
Percomorphaceae	ANCESTRAL SPECIES	19	ENSGT00940000164702.a	ENSGT00940000154003.A	ENSGT01050000244850.C.b.v	ENSGT01050000244850.A.a.o.b	ENSGT00940000159750	ENSGT00940000155415.lb	ENSGT00940000159601	ENSGT00940000155415.kb.a	ENSGT01030000234982	ENSGT00940000154649.A	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00770000121400	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00940000155765.s.b	ENSGT00590000083189.d	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00940000170596	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b
Tiger tail seahorse	MODERN SPECIES	467							ENSHCOG00000000186	si:cabz01085950.1 (ENSHCOG00000005815)	SYN3 (ENSHCOG00000005796)	TIMP3 (ENSHCOG00000005710)	ENSHCOG00000005700	ENSHCOG00000005695	zgc:165507 (ENSHCOG00000005689)	lrig3 (ENSHCOG00000005682)	atp23 (ENSHCOG00000005665)	rpap3 (ENSHCOG00000005650) #22	mapk12b (ENSHCOG00000005637)	ENSHCOG00000005621	mapk11 (ENSHCOG00000005608)	ENSHCOG00000005589	DENND11 (ENSHCOG00000005583)	arl1 (ENSHCOG00000005566)	UTP20 (ENSHCOG00000005421)	lyrm5a (ENSHCOG00000003336)	dnai7 (ENSHCOG00000003329)	lrmp (ENSHCOG00000003303)	bcat1 (ENSHCOG00000003202)	sox5 (ENSHCOG00000003165)	ENSHCOG00000003149	ETNK1 (ENSHCOG00000003143)	pyroxd1 (ENSHCOG00000003132)
Percomorphaceae_B	ANCESTRAL SPECIES	21	ENSGT00940000164702.a	ENSGT00940000154003.A	ENSGT01050000244850.C.b.v	ENSGT01050000244850.A.a.o.b	ENSGT00940000159750	ENSGT00940000155415.lb	ENSGT00940000159601	ENSGT00940000155415.kb.a	ENSGT00940000154649.A	ENSGT01030000234982	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00770000121400	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00940000155765.s.b	ENSGT00590000083189.d	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00940000170596	ENSGT00390000009532.A.d.a	ENSGT00940000156122
Percomorphaceae_C	ANCESTRAL SPECIES	22	ENSGT00940000164702.a	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT01050000244850.A.a.o.b	ENSGT00940000159750	ENSGT00940000155415.lb	ENSGT00940000159601	ENSGT00940000155415.kb.a	ENSGT00940000154649.A	ENSGT01030000234982	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00770000121400	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00940000155765.s.b	ENSGT00590000083189.d	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00940000170596	ENSGT00390000009532.A.d.a	ENSGT00940000156122
Eupercaria	ANCESTRAL SPECIES	21	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT01050000244850.A.a.o.b	ENSGT00940000159750	ENSGT00940000155415.lb	ENSGT00940000159601	ENSGT00940000155415.kb.a	ENSGT01030000234982	ENSGT00940000154649.A	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00770000121400	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00940000155765.s.b	ENSGT00590000083189.d	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00940000170596	ENSGT00390000009532.A.d.a	ENSGT00940000156122
Tetraodontidae	ANCESTRAL SPECIES	17	ENSGT00390000016813	ENSGT00940000155118	ENSGT00590000083189.d	ENSGT00940000155765.s.b	ENSGT00940000159750	ENSGT00940000155415.kb.b	ENSGT00940000159601	ENSGT00940000155415.kb.a	ENSGT01030000234982	ENSGT00940000154649.A	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT00940000154003.A	ENSGT00940000164702.a	ENSGT00940000157129.f.b	ENSGT00940000155834.i.a	ENSGT00390000001775.B	ENSGT00390000007134	ENSGT00530000063808.b	ENSGT00390000014429.b	ENSGT00940000156776.d.b.b	ENSGT00390000003057	ENSGT00940000154045.a	ENSGT00390000011669
Fugu	MODERN SPECIES	9	arl1 (ENSTRUG00000006254)	DENND11 (ENSTRUG00000006400)	ENSTRUG00000006575	si:cabz01085950.1 (ENSTRUG00000023011)	ENSTRUG00000006876	ENSTRUG00000030290	timp3 (ENSTRUG00000022084)	ENSTRUG00000033028	ENSTRUG00000028134	ENSTRUG00000030763	ENSTRUG00000007473	ENSTRUG00000018281	zgc:165507 (ENSTRUG00000024696)	lrig3 (ENSTRUG00000008005)	atp23 (ENSTRUG00000024962)	rpap3 (ENSTRUG00000008348) #22	mapk12b (ENSTRUG00000008589)	mapk11 (ENSTRUG00000008739)	ENSTRUG00000009407	ENSTRUG00000028101	ENSTRUG00000009626	hcfc2 (ENSTRUG00000009644)	ELK3 (ENSTRUG00000009760)	cdk17 (ENSTRUG00000009848)	optn (ENSTRUG00000010419)	ccdc3a (ENSTRUG00000010584)	camk1da (ENSTRUG00000010641)	cdc123 (ENSTRUG00000029399)	nudt5 (ENSTRUG00000028442)	il15ra (ENSTRUG00000021139)	rbm17 (ENSTRUG00000010698)
Tetraodon	MODERN SPECIES	11	SLC5A8 (ENSTNIG00000006923)	SLC5A8 (ENSTNIG00000006922)	UTP20 (ENSTNIG00000006921)	arl1 (ENSTNIG00000006920)	DENND11 (ENSTNIG00000006919)	ENSTNIG00000006918	si:cabz01085950.1 (ENSTNIG00000006917)	ENSTNIG00000006916	TIMP3 (ENSTNIG00000006915)	SYN3 (ENSTNIG00000006914)	si:ch73-252i11.1 (ENSTNIG00000006913)	ETV6 (ENSTNIG00000006912)	zgc:165507 (ENSTNIG00000006911)	lrig3 (ENSTNIG00000006910)	atp23 (ENSTNIG00000006909)	rpap3 (ENSTNIG00000006908) #22	mapk12b (ENSTNIG00000006907)	mapk11 (ENSTNIG00000006906)	ENSTNIG00000006905	ENSTNIG00000006904	ENSTNIG00000001953	hcfc2 (ENSTNIG00000006903)	ELK3 (ENSTNIG00000006902)	cdk17 (ENSTNIG00000006901)	phyh (ENSTNIG00000006900)	ENSTNIG00000000794	mcm10 (ENSTNIG00000006899)	optn (ENSTNIG00000006898)	ccdc3a (ENSTNIG00000006897)	camk1da (ENSTNIG00000006896)	cdc123 (ENSTNIG00000006895)
Eupecaria_A	ANCESTRAL SPECIES	21	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT01050000244850.A.a.o.b	ENSGT00940000159750	ENSGT00940000155415.lb	ENSGT00940000159601	ENSGT00940000155415.kb.b	ENSGT00940000154649.A	ENSGT01030000234982	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00770000121400	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00940000155765.s.b	ENSGT00590000083189.d	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00940000170596	ENSGT00390000009532.A.d.a	ENSGT00940000156122
Ballan wrasse	MODERN SPECIES	72	cdk17 (ENSLBEG00000027478)	ELK3 (ENSLBEG00000027500)	hcfc2 (ENSLBEG00000027528)	ENSLBEG00000027566	ENSLBEG00000027605	si:cabz01085950.1 (ENSLBEG00000027628)	SYN3 (ENSLBEG00000027643)	TIMP3 (ENSLBEG00000027668)	si:ch73-252i11.1 (ENSLBEG00000027680)	ENSLBEG00000027690	ETV6 (ENSLBEG00000027700)	ENSLBEG00000027710	zgc:165507 (ENSLBEG00000027724)	lrig3 (ENSLBEG00000027735)	atp23 (ENSLBEG00000027745)	rpap3 (ENSLBEG00000027759) #22	mapk12b (ENSLBEG00000027779)	mapk11 (ENSLBEG00000027802)	ENSLBEG00000027824	asb13a.2 (ENSLBEG00000027835)	net1 (ENSLBEG00000027852)	mkln1 (ENSLBEG00000027886)	NFYB (ENSLBEG00000027914)	TXNRD1 (ENSLBEG00000027928)	chst11 (ENSLBEG00000027940)	SLC41A2 (ENSLBEG00000027949)	nopchap1 (ENSLBEG00000027964)	ALDH1L2 (ENSLBEG00000027982)	samm50l (ENSLBEG00000028011)	scube1 (ENSLBEG00000028035)	MPPED1 (ENSLBEG00000028050)
Eupecaria_B	ANCESTRAL SPECIES	21	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT01050000244850.A.a.o.b	ENSGT00940000159750	ENSGT00940000155415.lb	ENSGT00940000159601	ENSGT00940000155415.kb.b	ENSGT01030000234982	ENSGT00940000154649.A	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00770000121400	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00940000155765.s.b	ENSGT00590000083189.d	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00940000170596	ENSGT00390000009532.A.d.a	ENSGT00940000156122
Perciformes	ANCESTRAL SPECIES	18	ENSGT00940000164702.a	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT00940000159750	ENSGT00940000155415.lb	ENSGT00940000159601	ENSGT00940000155415.kb.b	ENSGT01030000234982	ENSGT00940000154649.A	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00770000121400	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00940000155765.s.b	ENSGT00590000083189.d	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00940000170596	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b
Cottioidei	ANCESTRAL SPECIES	19	ENSGT00940000157129.f.b	ENSGT00940000164702.a	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT00940000159750	ENSGT00940000155415.lb	ENSGT00940000159601	ENSGT00940000155415.kb.b	ENSGT00940000154649.A	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00770000121400	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00940000155765.s.b	ENSGT00590000083189.d	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00940000170596	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b
Lumpfish	MODERN SPECIES	15	phyh (ENSCLMG00005021687)	cdk17 (ENSCLMG00005021501)	ELK3 (ENSCLMG00005021489)	hcfc2 (ENSCLMG00005021487)	CEP83 (ENSCLMG00005021477)	ENSCLMG00005021474	si:cabz01085950.1 (ENSCLMG00005021473)	TIMP3 (ENSCLMG00005021472)	SYN3 (ENSCLMG00005021471)	si:ch73-252i11.1 (ENSCLMG00005021470)	ETV6 (ENSCLMG00005021469)	ENSCLMG00005021468	zgc:165507 (ENSCLMG00005021467)	lrig3 (ENSCLMG00005021402)	atp23 (ENSCLMG00005021399)	rpap3 (ENSCLMG00005021396) #22	ENSCLMG00005021395	mapk12b (ENSCLMG00005021393)	mapk11 (ENSCLMG00005020114)	ENSCLMG00005020066	DENND11 (ENSCLMG00005020055)	arl1 (ENSCLMG00005020048)	ENSCLMG00005020046	ENSCLMG00005020045	ENSCLMG00005020043	ENSCLMG00005020042	ENSCLMG00005020041	ENSCLMG00005020040	ENSCLMG00005020039	ENSCLMG00005020038	ENSCLMG00005020036
Stickleback	MODERN SPECIES	3	hcfc2 (ENSGACG00000019145)	ENSGACG00000019139	ENSGACG00000019136	si:cabz01085950.1 (ENSGACG00000019134)	ENSGACG00000019133	ENSGACG00000019132	TIMP3 (ENSGACG00000019129)	ENSGACG00000019128	SYN3 (ENSGACG00000019125)	si:ch73-252i11.1 (ENSGACG00000019123)	ETV6 (ENSGACG00000019121)	TAFA2 (ENSGACG00000019120)	zgc:165507 (ENSGACG00000019116)	lrig3 (ENSGACG00000019115)	atp23 (ENSGACG00000019114)	rpap3 (ENSGACG00000019113) #22	ENSGACG00000019110	mapk12b (ENSGACG00000019108)	mapk11 (ENSGACG00000019107)	ENSGACG00000019105	DENND11 (ENSGACG00000019104)	arl1 (ENSGACG00000019098)	UTP20 (ENSGACG00000019092)	SLC5A8 (ENSGACG00000019087)	lyrm5a (ENSGACG00000019086)	dnai7 (ENSGACG00000019084)	IRAG2 (ENSGACG00000019082)	ENSGACG00000019080	ENSGACG00000019079	bcat1 (ENSGACG00000019077)	sox5 (ENSGACG00000019075)
Perciformes_a	ANCESTRAL SPECIES	19	ENSGT00940000157129.f.b	ENSGT00940000164702.a	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT00940000159750	ENSGT00940000155415.lb	ENSGT00940000159601	ENSGT01030000234982	ENSGT00940000154649.A	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00940000155765.s.b	ENSGT00590000083189.d	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671
Channel bull blenny	MODERN SPECIES	15	ube2nb (ENSCGOG00000010926)	nudt4b (ENSCGOG00000010957)	ENSCGOG00000010961	rassf8b (ENSCGOG00000010965)	si:cabz01085950.1 (ENSCGOG00000010970)	SYN3 (ENSCGOG00000010981)	TIMP3 (ENSCGOG00000011102)	ENSCGOG00000011109	si:ch73-252i11.1 (ENSCGOG00000011117)	ETV6 (ENSCGOG00000011126)	ENSCGOG00000011131	ENSCGOG00000011132	zgc:165507 (ENSCGOG00000011137)	lrig3 (ENSCGOG00000011144)	atp23 (ENSCGOG00000011227)	rpap3 (ENSCGOG00000011230) #22	mapk12b (ENSCGOG00000011313)	mapk11 (ENSCGOG00000014661)	ENSCGOG00000014669	CEP83 (ENSCGOG00000014675)	hcfc2 (ENSCGOG00000014727)	ELK3 (ENSCGOG00000014728)	plekha5 (ENSCGOG00000014731)	aebp2 (ENSCGOG00000014742)	ndufa5 (ENSCGOG00000014749)	COG5 (ENSCGOG00000014766)	gpr22a (ENSCGOG00000014946)
Pike perch	MODERN SPECIES	20	ELK3 (ENSSLUG00000015381)	hcfc2 (ENSSLUG00000015348)	CEP83 (ENSSLUG00000015305)	ENSSLUG00000015290	si:cabz01085950.1 (ENSSLUG00000015276)	TIMP3 (ENSSLUG00000015271)	SYN3 (ENSSLUG00000015020)	ENSSLUG00000014995	ENSSLUG00000014983	ENSSLUG00000014950	ETV6 (ENSSLUG00000014922)	TAFA2 (ENSSLUG00000014915)	zgc:165507 (ENSSLUG00000014908)	lrig3 (ENSSLUG00000014365)	atp23 (ENSSLUG00000014299)	rpap3 (ENSSLUG00000014238) #22	mapk12b (ENSSLUG00000013678)	mapk11 (ENSSLUG00000013555)	ENSSLUG00000013518	DENND11 (ENSSLUG00000013437)	arl1 (ENSSLUG00000013403)	UTP20 (ENSSLUG00000012172)	SLC5A8 (ENSSLUG00000012038)	lyrm5a (ENSSLUG00000012027)	dnai7 (ENSSLUG00000012016)	lrmp (ENSSLUG00000011976)	bcat1 (ENSSLUG00000011658)	sox5 (ENSSLUG00000009896)	ETNK1 (ENSSLUG00000009760)	pyroxd1 (ENSSLUG00000009687)	ENSSLUG00000009664
Eupecaria_C	ANCESTRAL SPECIES	18	ENSGT00940000155834.i.a	ENSGT00940000157129.f.b	ENSGT00940000164702.a	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT01050000244850.A.a.o.b	ENSGT00940000159750	ENSGT00940000155415.lb	ENSGT00940000159601	ENSGT00940000154649.A	ENSGT00940000159508	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00770000121400	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00940000155765.s.b	ENSGT00590000083189.d	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	34	ENSGT00940000155834.i.a	ENSGT00940000157129.f.b	ENSGT00940000164702.a	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT01050000244850.A.a.o.b	ENSGT00940000159750	ENSGT00940000155415.lb	ENSGT00940000159601	ENSGT00940000154649.A	ENSGT00940000159508	ENSGT00940000161214	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00770000121400	ENSGT00940000156189.a.b	ENSGT00940000160790
European seabass	MODERN SPECIES	23	mcm10 (ENSDLAG00005020256)	ENSDLAG00005027834	cdk17 (ENSDLAG00005020317)	ENSDLAG00005020460	ENSDLAG00005020463	ENSDLAG00005020488	ENSDLAG00005020822	ENSDLAG00005030406	ENSDLAG00005020856	ENSDLAG00005028655	ENSDLAG00005027919	ENSDLAG00005031537	SLC16A7 (ENSDLAG00005021469)	ENSDLAG00005021478	ATP23 (ENSDLAG00005027156)	ENSDLAG00005021502 #22	ENSDLAG00005021573	ENSDLAG00005022347	SLC5A8 (ENSDLAG00005029479)	ENSDLAG00005022709	arl1 (ENSDLAG00005026446)	ENSDLAG00005022820	ENSDLAG00005022870	ENSDLAG00005022878	ETFRF1 (ENSDLAG00005027190)	dnai7 (ENSDLAG00005022908)	ENSDLAG00005022917	bcat1 (ENSDLAG00005022939)	SOX5 (ENSDLAG00005023258)	ETNK1 (ENSDLAG00005030352)	ENSDLAG00005002319
Large yellow croaker	MODERN SPECIES	483	ELK3 (ENSLCRG00005008993)	hcfc2 (ENSLCRG00005008995)	CEP83 (ENSLCRG00005008996)	ENSLCRG00005008998	ENSLCRG00005009000	si:cabz01085950.1 (ENSLCRG00005009001)	ENSLCRG00005009002	SYN3 (ENSLCRG00005009004)	TIMP3 (ENSLCRG00005009912)	si:ch73-252i11.1 (ENSLCRG00005009918)	ENSLCRG00005009923	TAFA2 (ENSLCRG00005009926)	zgc:165507 (ENSLCRG00005009929)	lrig3 (ENSLCRG00005009932)	atp23 (ENSLCRG00005010181)	rpap3 (ENSLCRG00005010185) #22	ENSLCRG00005010189	mapk12b (ENSLCRG00005010201)	mapk11 (ENSLCRG00005010317)	smarca4a (ENSLCRG00005010550)	ATG4D (ENSLCRG00005010693)	MAST1 (ENSLCRG00005010704)	rtbdn (ENSLCRG00005012410)	junbb (ENSLCRG00005012411)	hook2 (ENSLCRG00005012442)	rpsa (ENSLCRG00005014977)	trir (ENSLCRG00005014979)	ubn2b (ENSLCRG00005014980)	slc25a38a (ENSLCRG00005014981)	MYH9 (ENSLCRG00005015007)	txn2 (ENSLCRG00005015609)
Gilthead seabream	MODERN SPECIES	5	tprkb (ENSSAUG00010026325)	alg10 (ENSSAUG00010026323)	CPNE8 (ENSSAUG00010026322)	ENSSAUG00010025673	ABCD2 (ENSSAUG00010025618)	SLC2A13 (ENSSAUG00010025615)	ENSSAUG00010025614	si:cabz01085950.1 (ENSSAUG00010025612)	TIMP3 (ENSSAUG00010025611)	SYN3 (ENSSAUG00010025580)	si:ch73-252i11.1 (ENSSAUG00010025572)	ENSSAUG00010025570	zgc:165507 (ENSSAUG00010025568)	lrig3 (ENSSAUG00010025548)	atp23 (ENSSAUG00010025537)	rpap3 (ENSSAUG00010025534) #22	ENSSAUG00010025530	mapk12b (ENSSAUG00010025495)	mapk11 (ENSSAUG00010025462)	ENSSAUG00010025457	ENSSAUG00010025413	DENND11 (ENSSAUG00010025379)	arl1 (ENSSAUG00010025376)	UTP20 (ENSSAUG00010025375)	SLC5A8 (ENSSAUG00010024896)	SLC5A8 (ENSSAUG00010024879)	lyrm5a (ENSSAUG00010024877)	dnai7 (ENSSAUG00010024876)	lrmp (ENSSAUG00010024874)	bcat1 (ENSSAUG00010024871)	sox5 (ENSSAUG00010023898)
Percomorphaceae_D	ANCESTRAL SPECIES	22	ENSGT00390000001775.B	ENSGT00940000155834.i.a	ENSGT00940000157129.f.b	ENSGT00940000164702.a	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT00940000159750	ENSGT00940000155415.lb	ENSGT00940000159601	ENSGT00940000154649.A	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00770000121400	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00940000155765.s.b	ENSGT00590000083189.d	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b
Anabantaria	ANCESTRAL SPECIES	21	ENSGT00390000001775.B	ENSGT00940000155834.i.a	ENSGT00940000157129.f.b	ENSGT00940000164702.a	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT00940000159750	ENSGT00940000155415.lb	ENSGT00940000159601	ENSGT00940000154649.A	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00770000121400	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00940000155765.s.b	ENSGT00590000083189.d	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894
Anabantoidei	ANCESTRAL SPECIES	26	ENSGT00390000001775.B	ENSGT00940000155834.i.a	ENSGT00940000157129.f.b	ENSGT00940000164702.a	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT00940000159750	ENSGT00940000155415.lb	ENSGT00940000159601	ENSGT00940000154649.A	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00770000121400	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00940000155765.s.b	ENSGT00590000083189.d	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b
Climbing perch	MODERN SPECIES	14	phyh (ENSATEG00000004705)	cdk17 (ENSATEG00000004749)	ENSATEG00000004799	ENSATEG00000004809	ENSATEG00000004823	ENSATEG00000004848	ENSATEG00000028120	ENSATEG00000004920	ENSATEG00000005004	ENSATEG00000005022	ENSATEG00000005035	ENSATEG00000005085	SLC16A7 (ENSATEG00000005110)	ENSATEG00000005132	ATP23 (ENSATEG00000028987)	ENSATEG00000005308 #22	ENSATEG00000005324	ENSATEG00000005369	ENSATEG00000005410	ENSATEG00000029902	ENSATEG00000005420	ENSATEG00000005511	arl1 (ENSATEG00000005559)	ENSATEG00000005881	lyrm5a (ENSATEG00000005970)	dnai7 (ENSATEG00000005986)	ENSATEG00000029414	bcat1 (ENSATEG00000006183)	SOX5 (ENSATEG00000006293)	ENSATEG00000004798	ETNK1 (ENSATEG00000006364)
Siamese fighting fish	MODERN SPECIES	20	nudt5 (ENSBSLG00000004327)	fbxo18 (ENSBSLG00000004336)	ENSBSLG00000004742	rbm17 (ENSBSLG00000004842)	pfkfb3 (ENSBSLG00000005132)	ntf3 (ENSBSLG00000006284)	si:cabz01085950.1 (ENSBSLG00000006385)	TIMP3 (ENSBSLG00000006443)	SYN3 (ENSBSLG00000006719)	ENSBSLG00000007228	ETV6 (ENSBSLG00000007759)	ENSBSLG00000007843	zgc:165507 (ENSBSLG00000007871)	lrig3 (ENSBSLG00000007943)	atp23 (ENSBSLG00000008435)	rpap3 (ENSBSLG00000008505) #22	ENSBSLG00000008542	mapk12b (ENSBSLG00000008599)	mapk11 (ENSBSLG00000008811)	DENND11 (ENSBSLG00000008885)	arl1 (ENSBSLG00000008986)	UTP20 (ENSBSLG00000009067)	SLC5A8 (ENSBSLG00000009223)	lyrm5a (ENSBSLG00000009804)	dnai7 (ENSBSLG00000009820)	lrmp (ENSBSLG00000009877)	bcat1 (ENSBSLG00000010295)	sox5 (ENSBSLG00000011237)	ETNK1 (ENSBSLG00000011379)	pyroxd1 (ENSBSLG00000011396)	ENSBSLG00000011526
Zig-zag eel	MODERN SPECIES	15	cdk17 (ENSMAMG00000000817)	phyh (ENSMAMG00000000892)	ucmaa (ENSMAMG00000000958)	mcm10 (ENSMAMG00000001004)	OPTN (ENSMAMG00000001033)	ENSMAMG00000001053	ENSMAMG00000001320	ENSMAMG00000001345	TIMP3 (ENSMAMG00000024674)	ENSMAMG00000001483	ENSMAMG00000001512	TAFA2 (ENSMAMG00000001545)	SLC16A7 (ENSMAMG00000001571)	LRIG3 (ENSMAMG00000001604)	ATP23 (ENSMAMG00000001637)	ENSMAMG00000001664 #22	ENSMAMG00000001725	ENSMAMG00000001769	ENSMAMG00000001807	ENSMAMG00000001926	arl1 (ENSMAMG00000001968)	ENSMAMG00000002063	SLC5A8 (ENSMAMG00000002374)	lyrm5a (ENSMAMG00000002406)	DNAI7 (ENSMAMG00000002418)	SOX5 (ENSMAMG00000002680)	ETNK1 (ENSMAMG00000002735)	ENSMAMG00000002758	ENSMAMG00000002815	ENSMAMG00000002843	ENSMAMG00000003635
Carangaria	ANCESTRAL SPECIES	22	ENSGT00390000001775.B	ENSGT00940000155834.i.a	ENSGT00940000157129.f.b	ENSGT00940000164702.a	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT00940000159750	ENSGT00940000155415.lb	ENSGT00940000159601	ENSGT00940000154649.A	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT01100000263479.A	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00940000155765.s.b	ENSGT00590000083189.d	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b
Pleuronectoidei	ANCESTRAL SPECIES	16		ENSGT00940000155834.i.a	ENSGT00940000157129.f.b	ENSGT00940000164702.a	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT00940000159750	ENSGT00940000155415.lb	ENSGT00940000159601	ENSGT00940000154649.A	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00940000155765.s.b	ENSGT00590000083189.d	ENSGT00940000155118	ENSGT00900000143486	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894
Tongue sole	DUPLICATION
Tongue sole	MODERN SPECIES	18	ENSCSEG00000014037	IAPP (ENSCSEG00000014586)	pyroxd1 (ENSCSEG00000014598)	ETNK1 (ENSCSEG00000014633)	sox5 (ENSCSEG00000014640)	lrmp (ENSCSEG00000014668)	dnai7 (ENSCSEG00000014711)	lyrm5a (ENSCSEG00000014721)	SLC5A8 (ENSCSEG00000014725)	UTP20 (ENSCSEG00000014760)	ENSCSEG00000014803	ENSCSEG00000014808	zgc:165507 (ENSCSEG00000015578)	lrig3 (ENSCSEG00000015583)	atp23 (ENSCSEG00000015591)	rpap3 (ENSCSEG00000015598) #22	mapk12b (ENSCSEG00000015613)	ENSCSEG00000015647 #22	mapk11 (ENSCSEG00000015651)	ENSCSEG00000015678	DENND11 (ENSCSEG00000015715)	ENSCSEG00000015736	ENSCSEG00000015739	ENSCSEG00000015747	ENSCSEG00000015756	si:cabz01085950.1 (ENSCSEG00000015770)	SYN3 (ENSCSEG00000015786)	TIMP3 (ENSCSEG00000015799)	si:ch73-252i11.1 (ENSCSEG00000015804)	ENSCSEG00000015823	CEP83 (ENSCSEG00000015843)
Tongue sole	MODERN SPECIES	18	pyroxd1 (ENSCSEG00000014598)	ETNK1 (ENSCSEG00000014633)	sox5 (ENSCSEG00000014640)	lrmp (ENSCSEG00000014668)	dnai7 (ENSCSEG00000014711)	lyrm5a (ENSCSEG00000014721)	SLC5A8 (ENSCSEG00000014725)	UTP20 (ENSCSEG00000014760)	ENSCSEG00000014803	ENSCSEG00000014808	zgc:165507 (ENSCSEG00000015578)	lrig3 (ENSCSEG00000015583)	atp23 (ENSCSEG00000015591)	rpap3 (ENSCSEG00000015598) #22	mapk12b (ENSCSEG00000015613)	ENSCSEG00000015647 #22	mapk11 (ENSCSEG00000015651)	ENSCSEG00000015678	DENND11 (ENSCSEG00000015715)	ENSCSEG00000015736	ENSCSEG00000015739	ENSCSEG00000015747	ENSCSEG00000015756	si:cabz01085950.1 (ENSCSEG00000015770)	SYN3 (ENSCSEG00000015786)	TIMP3 (ENSCSEG00000015799)	si:ch73-252i11.1 (ENSCSEG00000015804)	ENSCSEG00000015823	CEP83 (ENSCSEG00000015843)	hcfc2 (ENSCSEG00000015862)	ELK3 (ENSCSEG00000015867)
Turbot	MODERN SPECIES	11	ENSSMAG00000031453	ENSSMAG00000035481	ENSSMAG00000014659	ENSSMAG00000030158	ENSSMAG00000014577	ENSSMAG00000014546	ENSSMAG00000014501	ENSSMAG00000014355	ENSSMAG00000021556	ENSSMAG00000014233	ENSSMAG00000014184	ENSSMAG00000031164	SLC16A7 (ENSSMAG00000011763)	ENSSMAG00000011780	ATP23 (ENSSMAG00000011866)	ENSSMAG00000011902 #22	ENSSMAG00000011946	ENSSMAG00000012001	ENSSMAG00000012024	phyh (ENSSMAG00000012047)	UCMA (ENSSMAG00000021558)	mcm10 (ENSSMAG00000012100)	optn (ENSSMAG00000012125)	ccdc3a (ENSSMAG00000012165)	camk1da (ENSSMAG00000012183)	ENSSMAG00000012250	ENSSMAG00000012271	cdc123 (ENSSMAG00000012287)	nudt5 (ENSSMAG00000012320)	FBH1 (ENSSMAG00000012330)	ENSSMAG00000012356
Carangaria_A	ANCESTRAL SPECIES	33	ENSGT00390000001775.B	ENSGT00940000155834.i.a	ENSGT00940000157129.f.b	ENSGT00940000164702.a	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT00940000159750	ENSGT00940000155415.lb	ENSGT00940000159601	ENSGT00940000154649.A	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT01100000263479.A	ENSGT00940000156189.a.b	ENSGT00940000160790
Seriola	ANCESTRAL SPECIES	9	ENSGT00940000155765.s.b	ENSGT00940000155834.i.a	ENSGT00940000157129.f.b	ENSGT00940000164702.a	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT00940000159750	ENSGT00940000155415.lb	ENSGT00940000159601	ENSGT00940000154649.A	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT01100000263479.A	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00940000158027	ENSGT00390000004586	ENSGT01050000244841.A.b.b.a.a	ENSGT00390000008099	ENSGT00510000048519.a	ENSGT00940000155728.p	ENSGT00390000001775.B	ENSGT00390000011492.a	ENSGT00390000007134	ENSGT00530000063808.b	ENSGT00390000014429.b	ENSGT00940000156776.d.b.b
Yellowtail amberjack	MODERN SPECIES	3050	ENSSLDG00000013019	cdk17 (ENSSLDG00000013087)	ELK3 (ENSSLDG00000013240)	hcfc2 (ENSSLDG00000013256)	CEP83 (ENSSLDG00000013281)	ENSSLDG00000013318	si:cabz01085950.1 (ENSSLDG00000013333)	SYN3 (ENSSLDG00000013348)	TIMP3 (ENSSLDG00000013368)	si:ch73-252i11.1 (ENSSLDG00000013415)	ETV6 (ENSSLDG00000013506)	ENSSLDG00000013540	zgc:165507 (ENSSLDG00000013556)	lrig3 (ENSSLDG00000013601)	atp23 (ENSSLDG00000013667)	rpap3 (ENSSLDG00000013698) #22	ENSSLDG00000013824	mapk12b (ENSSLDG00000013856)	mapk11 (ENSSLDG00000013911)	TMTC1 (ENSSLDG00000013960)	COG5 (ENSSLDG00000014001)	gpr22a (ENSSLDG00000014060)	ndufa5 (ENSSLDG00000014081)	aebp2 (ENSSLDG00000014098)	plekha5 (ENSSLDG00000014123)	phyh (ENSSLDG00000014176)	ucmaa (ENSSLDG00000014198)	mcm10 (ENSSLDG00000014222)	optn (ENSSLDG00000014254)	ccdc3a (ENSSLDG00000014277)	camk1da (ENSSLDG00000014303)
Greater amberjack	MODERN SPECIES	60	ENSSDUG00000013938	cdk17 (ENSSDUG00000013962)	ELK3 (ENSSDUG00000013999)	hcfc2 (ENSSDUG00000014013)	CEP83 (ENSSDUG00000014038)	ENSSDUG00000014057	si:cabz01085950.1 (ENSSDUG00000014082)	SYN3 (ENSSDUG00000014093)	TIMP3 (ENSSDUG00000014123)	si:ch73-252i11.1 (ENSSDUG00000014148)	ETV6 (ENSSDUG00000014192)	ENSSDUG00000014234	zgc:165507 (ENSSDUG00000014254)	lrig3 (ENSSDUG00000014269)	atp23 (ENSSDUG00000014295)	rpap3 (ENSSDUG00000014316) #22	mapk12b (ENSSDUG00000014372)	mapk11 (ENSSDUG00000014405)	TMTC1 (ENSSDUG00000014450)	COG5 (ENSSDUG00000014504)	gpr22a (ENSSDUG00000014575)	ndufa5 (ENSSDUG00000014591)	aebp2 (ENSSDUG00000014611)	plekha5 (ENSSDUG00000014626)	ENSSDUG00000014669	ENSSDUG00000014688	ENSSDUG00000014723	phyh (ENSSDUG00000014730)	ENSSDUG00000014737	mcm10 (ENSSDUG00000014745)	optn (ENSSDUG00000014763)
Barramundi perch	MODERN SPECIES	202							si:cabz01085950.1 (ENSLCAG00010009180)	TIMP3 (ENSLCAG00010009174)	SYN3 (ENSLCAG00010009162)	si:ch73-252i11.1 (ENSLCAG00010009153)	ETV6 (ENSLCAG00010009144)	ENSLCAG00010009140	zgc:165507 (ENSLCAG00010009137)	lrig3 (ENSLCAG00010009114)	atp23 (ENSLCAG00010009106)	rpap3 (ENSLCAG00010009099) #22	mapk12b (ENSLCAG00010009063)	mapk11 (ENSLCAG00010008943)	ENSLCAG00010008907	ENSLCAG00010008902	ENSLCAG00010008885	ENSLCAG00010008875	ENSLCAG00010008858	ENSLCAG00010008855	ENSLCAG00010008847	ENSLCAG00010008842	CNOT2 (ENSLCAG00010008796)	KCNMB4 (ENSLCAG00010008779)	PTPRB (ENSLCAG00010008739)	PTPRR (ENSLCAG00010008715)	ENSLCAG00010008705
Ovalentaria	ANCESTRAL SPECIES	22	ENSGT00940000157129.f.b	ENSGT00940000164702.a	ENSGT00940000154003.A	ENSGT01050000244850.C.b.v	ENSGT00940000159750	ENSGT00940000155415.lb	ENSGT00940000159601	ENSGT00940000155415.kb.a	ENSGT00940000154649.A	ENSGT01030000234982	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00770000121400	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00940000155765.s.b	ENSGT00590000083189.d	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b
Ovalentaria_B	ANCESTRAL SPECIES	23					ENSGT00940000159750	ENSGT00940000155415.lb	ENSGT00940000159601	ENSGT00940000155415.kb.a	ENSGT00940000154649.A	ENSGT01030000234982	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00770000121400	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00940000155765.s.b	ENSGT00590000083189.d	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b
Cichlidae	ANCESTRAL SPECIES	24						ENSGT00940000159750	ENSGT00940000155415.lb	ENSGT00940000159601	ENSGT00940000154649.A	ENSGT01030000234982	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00940000155765.s.b	ENSGT00590000083189.d	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o.d	ENSGT00940000155166.A.o.c	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	21	ENSGT00940000163701.b.a.a.a.b.c.a.q.b.a	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT01100000263473.a.b.g.a.a.b.a.b.a.a.a.a	ENSGT00900000141362.a.b.c.a	ENSGT00940000159750	ENSGT00940000155415.lb	ENSGT00940000159601	ENSGT01030000234982	ENSGT00940000154649.A.j.b	ENSGT00940000154649.A.j.a	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00940000155765.s.b	ENSGT00590000083189.d	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o.d	ENSGT00940000155166.A.o.c	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b
Nile tilapia	MODERN SPECIES	8	ENSONIG00000009980	ENSONIG00000042889	ENSONIG00000034224	si:cabz01085950.1 (ENSONIG00000009978)	SYN3 (ENSONIG00000009968)	ENSONIG00000030943	TIMP3 (ENSONIG00000009976)	si:ch73-252i11.1 (ENSONIG00000009963)	ETV6 (ENSONIG00000009962)	ENSONIG00000042621	ENSONIG00000034150	zgc:165507 (ENSONIG00000009955)	ENSONIG00000033768	lrig3 (ENSONIG00000009948)	atp23 (ENSONIG00000009946)	rpap3 (ENSONIG00000009942) #22	mapk12b (ENSONIG00000009937)	mapk11 (ENSONIG00000009933)	ENSONIG00000009926	DENND11 (ENSONIG00000009925)	arl1 (ENSONIG00000009921)	UTP20 (ENSONIG00000009910)	SLC5A8 (ENSONIG00000009903)	SLC5A8 (ENSONIG00000033955)	SLC5A8 (ENSONIG00000009901)	lyrm5a (ENSONIG00000042487)	dnai7 (ENSONIG00000009899)	lrmp (ENSONIG00000033143)	bcat1 (ENSONIG00000009889)	sox5 (ENSONIG00000009878)	ETNK1 (ENSONIG00000009876)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	10	ENSGT00900000141362.a.b.c.a	ENSGT00940000163701.b.a.a.a.b.c.a.r	ENSGT00940000159750	ENSGT00940000155415.kb.b	ENSGT00940000159601	ENSGT00940000155415.lb	ENSGT00940000154649.A.j.b	ENSGT00940000154649.A.i	ENSGT01030000234982	ENSGT00940000154649.A.j.a.a	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00940000155765.s.b	ENSGT00590000083189.d	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o.d	ENSGT00940000155166.A.o.c	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b
Haplochromini	ANCESTRAL SPECIES	9	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT01100000263473.a.b.g.a.a.b.a.b.a.a.a.a	ENSGT00900000141362.a.b.c.a	ENSGT00940000163701.b.a.a.a.b.c.a.r	ENSGT00940000159750	ENSGT00940000159601	ENSGT00940000155415.lb	ENSGT00940000154649.A.j.b	ENSGT00940000154649.A.j.a.a	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000154829.i.b.f.b	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00940000155765.s.b	ENSGT00590000083189.d	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o.d	ENSGT00940000155166.A.o.c	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b
Haplochromini_A	ANCESTRAL SPECIES	9	ENSGT00900000141362.a.b.c.a	ENSGT00940000163701.b.a.a.a.b.c.a.r	ENSGT00940000159750	ENSGT00940000159601	ENSGT00940000155415.lb	ENSGT01030000234982.a	ENSGT00940000154649.A.j.b	ENSGT00940000154649.A.i	ENSGT01030000234982.b	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000154829.i.b.f.b	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00940000155765.s.b	ENSGT00590000083189.d	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o.d	ENSGT00940000155166.A.o.c	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b
Haplochromini_B	ANCESTRAL SPECIES	11	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT01100000263473.a.b.g.a.a.b.a.b.a.a.a.a	ENSGT00900000141362.a.b.c.a	ENSGT00940000163701.b.a.a.a.b.c.a.r	ENSGT00940000159750	ENSGT00940000159601	ENSGT00940000155415.lb	ENSGT00940000154649.A.j.b	ENSGT00940000154649.A.j.a.a	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000154829.i.b.f.b	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00940000155765.s.b	ENSGT00590000083189.d	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o.d	ENSGT00940000155166.A.o.c.c.a.a	ENSGT00940000155166.A.o.c.c.a.b	ENSGT00940000155166.A.o.c.d	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a
Eastern happy	MODERN SPECIES	8	ENSACLG00000009183	ENSACLG00000009173	ENSACLG00000009139	si:cabz01085950.1 (ENSACLG00000009103)	TIMP3 (ENSACLG00000009070)	ENSACLG00000009064	SYN3 (ENSACLG00000009025)	ENSACLG00000008412	ENSACLG00000008401	ENSACLG00000008377	ETV6 (ENSACLG00000008352)	ENSACLG00000008346	zgc:165507 (ENSACLG00000008342)	lrig3 (ENSACLG00000008332)	atp23 (ENSACLG00000008323)	rpap3 (ENSACLG00000008312) #22	mapk12b (ENSACLG00000008294)	mapk11 (ENSACLG00000008281)	ENSACLG00000008205	DENND11 (ENSACLG00000008193)	arl1 (ENSACLG00000008188)	UTP20 (ENSACLG00000008064)	SLC5A8 (ENSACLG00000008041)	SLC5A8 (ENSACLG00000008011)	SLC5A8 (ENSACLG00000007984)	SLC5A8 (ENSACLG00000007962)	SLC5A8 (ENSACLG00000007949)	lyrm5a (ENSACLG00000007939)	dnai7 (ENSACLG00000007911)	lrmp (ENSACLG00000007736)	bcat1 (ENSACLG00000007695)
Zebra mbuna	MODERN SPECIES	1099	si:cabz01085950.1 (ENSMZEG00005018287)	TIMP3 (ENSMZEG00005018280)	SYN3 (ENSMZEG00005018271)	ENSMZEG00005018268	ENSMZEG00005018262	ENSMZEG00005018261	ENSMZEG00005018251	ENSMZEG00005018239	ETV6 (ENSMZEG00005018226)	ENSMZEG00005018225	ENSMZEG00005018213	zgc:165507 (ENSMZEG00005018207)	ENSMZEG00005018198	lrig3 (ENSMZEG00005018194)	atp23 (ENSMZEG00005018191)	rpap3 (ENSMZEG00005018183) #22	mapk12b (ENSMZEG00005018174)	mapk11 (ENSMZEG00005018169)	ENSMZEG00005018142	DENND11 (ENSMZEG00005018139)	arl1 (ENSMZEG00005018136)	UTP20 (ENSMZEG00005018123)	SLC5A8 (ENSMZEG00005018112)	ENSMZEG00005018105	SLC5A8 (ENSMZEG00005018094)	SLC5A8 (ENSMZEG00005018085)	SLC5A8 (ENSMZEG00005018078)	SLC5A8 (ENSMZEG00005018056)	SLC5A8 (ENSMZEG00005018045)	lyrm5a (ENSMZEG00005018039)	dnai7 (ENSMZEG00005018035)
P. nyererei	MODERN SPECIES	345	ENSPNYG00000012443	ENSPNYG00000012430	ENSPNYG00000012407	si:cabz01085950.1 (ENSPNYG00000012389)	TIMP3 (ENSPNYG00000012365)	SYN3 (ENSPNYG00000012315)	ENSPNYG00000012276	ENSPNYG00000012196	ENSPNYG00000012131	ENSPNYG00000012109	ETV6 (ENSPNYG00000012059)	ENSPNYG00000012029	zgc:165507 (ENSPNYG00000012002)	lrig3 (ENSPNYG00000011974)	atp23 (ENSPNYG00000011953)	rpap3 (ENSPNYG00000011935) #22	mapk12b (ENSPNYG00000011897)	mapk11 (ENSPNYG00000011822)	ENSPNYG00000011738	DENND11 (ENSPNYG00000011693)	arl1 (ENSPNYG00000011671)	UTP20 (ENSPNYG00000011561)	SLC5A8 (ENSPNYG00000011507)	SLC5A8 (ENSPNYG00000011396)
Burton s mouthbrooder	MODERN SPECIES	532						si:cabz01085950.1 (ENSHBUG00000011397)	SYN3 (ENSHBUG00000011386)	TIMP3 (ENSHBUG00000011366)	si:ch73-252i11.1 (ENSHBUG00000011345)	ETV6 (ENSHBUG00000011311)	ENSHBUG00000011257	zgc:165507 (ENSHBUG00000011242)	ENSHBUG00000011207	lrig3 (ENSHBUG00000011178)	atp23 (ENSHBUG00000011166)	rpap3 (ENSHBUG00000011144) #22	mapk12b (ENSHBUG00000011105)	mapk11 (ENSHBUG00000011066)	ENSHBUG00000010989	DENND11 (ENSHBUG00000010664)	arl1 (ENSHBUG00000010636)	UTP20 (ENSHBUG00000010613)	SLC5A8 (ENSHBUG00000010331)	SLC5A8 (ENSHBUG00000010281)
Lyretail cichlid	MODERN SPECIES	356	ENSNBRG00000020255	ENSNBRG00000020239	ENSNBRG00000020224	ENSNBRG00000020212	si:cabz01085950.1 (ENSNBRG00000020197)	ENSNBRG00000020186	TIMP3 (ENSNBRG00000020168)	ENSNBRG00000020156	ENSNBRG00000020150	si:ch73-252i11.1 (ENSNBRG00000020115)	ETV6 (ENSNBRG00000020085)	TAFA2 (ENSNBRG00000020067)	zgc:165507 (ENSNBRG00000020055)	lrig3 (ENSNBRG00000020017)	atp23 (ENSNBRG00000019993)	rpap3 (ENSNBRG00000019925) #22	mapk12b (ENSNBRG00000019865)	mapk11 (ENSNBRG00000019845)	ENSNBRG00000019820	DENND11 (ENSNBRG00000019799)	arl1 (ENSNBRG00000019783)	UTP20 (ENSNBRG00000019464)	SLC5A8 (ENSNBRG00000019340)
Midas cichlid	MODERN SPECIES	1703			si:cabz01085950.1 (ENSACIG00000007197)	SYN3 (ENSACIG00000007222)	TIMP3 (ENSACIG00000007403)	ENSACIG00000007422	ENSACIG00000007451	ENSACIG00000007478	ENSACIG00000007539	ENSACIG00000007569	ETV6 (ENSACIG00000007643)	ENSACIG00000007666	zgc:165507 (ENSACIG00000007684)	lrig3 (ENSACIG00000007694)	atp23 (ENSACIG00000007717)	rpap3 (ENSACIG00000007746) #22	mapk12b (ENSACIG00000007843)	mapk11 (ENSACIG00000007879)	ENSACIG00000007905	DENND11 (ENSACIG00000007932)	arl1 (ENSACIG00000007953)	UTP20 (ENSACIG00000007987)	ENSACIG00000008097	SLC5A8 (ENSACIG00000008113)	SLC5A8 (ENSACIG00000008155)	SLC5A8 (ENSACIG00000008193)	SLC5A8 (ENSACIG00000008229)	lyrm5a (ENSACIG00000008296)	dnai7 (ENSACIG00000008311)
Pomacentridae	ANCESTRAL SPECIES	40						ENSGT00940000159750	ENSGT00940000155415.lb	ENSGT00940000159601	ENSGT00940000155415.kb.a	ENSGT00940000154649.A	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00770000121400	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00940000155765.s.b	ENSGT00590000083189.d	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b
Pomacentridae_A	ANCESTRAL SPECIES	23	ENSGT00940000158123	ENSGT00940000157638	ENSGT00940000159226	ENSGT00940000158420	ENSGT00440000039984.b	ENSGT00940000159750	ENSGT00940000155415.lb	ENSGT00940000159601	ENSGT00940000155415.kb.a	ENSGT00940000154649.A	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00770000121400	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00540000070023.c.b.j	ENSGT00940000155210.a.b	ENSGT00940000158677	ENSGT00950000182839.B.a.a.k	ENSGT00400000022326.b.a.a	ENSGT00940000164289.b.d	ENSGT00390000001969.b.e.b	ENSGT00390000007283.a	ENSGT00390000011648.a	ENSGT00940000156451	ENSGT00940000157617	ENSGT00940000159857.a.a
Amphiprion	ANCESTRAL SPECIES	53												ENSGT00940000153438.b	ENSGT00390000006485.c.sc	ENSGT00940000153678.a.a	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00770000121400	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00540000070023.c.b.j	ENSGT00940000155210.a.b	ENSGT00940000158677	ENSGT00950000182839.B.a.a.k	ENSGT00400000022326.b.a.a	ENSGT00940000164289.b.d	ENSGT00390000001969.b.e.b	ENSGT00390000007283.a	ENSGT00390000011648.a	ENSGT00940000156451	ENSGT00940000157617	ENSGT00940000159857.a.a
Clown anemonefish	MODERN SPECIES	617											TMTC1 (ENSAOCG00000012954)	caprin2 (ENSAOCG00000013014)	SINHCAF (ENSAOCG00000013051)	dennd5b (ENSAOCG00000013211)	atp23 (ENSAOCG00000013228)	rpap3 (ENSAOCG00000013245) #22	mapk12b (ENSAOCG00000013274)	mapk11 (ENSAOCG00000013319)	UBE2N (ENSAOCG00000013335)	nudt4b (ENSAOCG00000013366)	pkp2 (ENSAOCG00000013382)	rassf8b (ENSAOCG00000013413)	ENSAOCG00000013466	ENSAOCG00000013503	RSBN1L (ENSAOCG00000013529)	TMEM60 (ENSAOCG00000013537)	phtf2 (ENSAOCG00000013658)	adipor2 (ENSAOCG00000013697)
Orange clownfish	MODERN SPECIES	13	ENSAPEG00000002100	ENSAPEG00000002124	ENSAPEG00000002183	plekha5 (ENSAPEG00000002215)	aebp2 (ENSAPEG00000002227)	ndufa5 (ENSAPEG00000002237)	COG5 (ENSAPEG00000002269)	gpr22a (ENSAPEG00000002352)	ipo8 (ENSAPEG00000002396)	TMTC1 (ENSAPEG00000002517)	ENSAPEG00000002572	ENSAPEG00000002586	sinhcaf (ENSAPEG00000002609)	dennd5b (ENSAPEG00000002641)	atp23 (ENSAPEG00000002714)	rpap3 (ENSAPEG00000002745) #22	ENSAPEG00000002781	mapk12b (ENSAPEG00000002803)	mapk11 (ENSAPEG00000002863)	UBE2N (ENSAPEG00000002936)	nudt4b (ENSAPEG00000002958)	ENSAPEG00000002986	pkp2 (ENSAPEG00000003017)	rassf8b (ENSAPEG00000003044)	tpte (ENSAPEG00000003092)	ENSAPEG00000003126	ENSAPEG00000003213	ENSAPEG00000003319	RSBN1L (ENSAPEG00000003432)	TMEM60 (ENSAPEG00000003441)	phtf2 (ENSAPEG00000003463)
Spiny chromis	MODERN SPECIES	61								TIMP3 (ENSAPOG00000015366)	ENSAPOG00000015338	si:ch73-252i11.1 (ENSAPOG00000015327)	ENSAPOG00000015305	ENSAPOG00000015299	zgc:165507 (ENSAPOG00000015289)	lrig3 (ENSAPOG00000015255)	atp23 (ENSAPOG00000015193)	rpap3 (ENSAPOG00000015160) #22	mapk12b (ENSAPOG00000015128)	mapk11 (ENSAPOG00000015032)	UBE2N (ENSAPOG00000014955)	nudt4b (ENSAPOG00000014940)	OTUB2 (ENSAPOG00000014898)	DDX24 (ENSAPOG00000014909)	SERPINA10 (ENSAPOG00000014859)	atxn3 (ENSAPOG00000000414)	UBR1 (ENSAPOG00000014822)	ENSAPOG00000014624	TMEM179 (ENSAPOG00000014604)	ENSAPOG00000014581	KIF26A (ENSAPOG00000014528)	aspg (ENSAPOG00000014512)	arf6b (ENSAPOG00000014406)
Bicolor damselfish	MODERN SPECIES	596														lrig3 (ENSSPAG00000014348)	atp23 (ENSSPAG00000014418)	rpap3 (ENSSPAG00000014446) #22	mapk12b (ENSSPAG00000014478)	mapk11 (ENSSPAG00000014521)	ENSSPAG00000014579	DENND11 (ENSSPAG00000014609)	arl1 (ENSSPAG00000014633)	UTP20 (ENSSPAG00000014674)	SLC5A8 (ENSSPAG00000014763)	SLC5A8 (ENSSPAG00000014808)	lyrm5a (ENSSPAG00000014907)	dnai7 (ENSSPAG00000014929)	IRAG2 (ENSSPAG00000015012)	bcat1 (ENSSPAG00000015020)
Atherinomorphae	ANCESTRAL SPECIES	21	ENSGT00940000157129.f.b	ENSGT00940000164702.a	ENSGT00940000154003.A	ENSGT01050000244850.C.b.v	ENSGT00940000159750	ENSGT00940000155415.lb	ENSGT00940000159601	ENSGT00940000155415.kb.a	ENSGT00940000154649.A	ENSGT01030000234982	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00940000155765.s.b	ENSGT00590000083189.d	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671
Oryzias	ANCESTRAL SPECIES	20	ENSGT00390000001775.B	ENSGT00940000155834.i.a	ENSGT00940000157129.f.b	ENSGT00940000164702.a.c	ENSGT00940000154003.A	ENSGT00940000159750.l	ENSGT00940000155415.kb.b	ENSGT00940000159601	ENSGT00940000155415.lb	ENSGT00940000154649.A	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00940000155765.s.b	ENSGT00590000083189.d	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671
Oryzias_b	ANCESTRAL SPECIES	66						ENSGT00940000159750.l	ENSGT00940000155415.kb.b	ENSGT00940000159601	ENSGT00940000155415.lb	ENSGT00940000154649.A	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00940000155765.s.b	ENSGT00590000083189.d	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671
Javanese ricefish	MODERN SPECIES	15	aebp2 (ENSOJAG00000007860)	plekha5 (ENSOJAG00000007757)	ENSOJAG00000007730	ENSOJAG00000007718	ENSOJAG00000007707	ENSOJAG00000007692	si:cabz01085950.1 (ENSOJAG00000007672)	TIMP3 (ENSOJAG00000007651)	SYN3 (ENSOJAG00000007403)	si:ch73-252i11.1 (ENSOJAG00000007386)	ETV6 (ENSOJAG00000007372)	ENSOJAG00000007362	zgc:165507 (ENSOJAG00000007346)	lrig3 (ENSOJAG00000007182)	atp23 (ENSOJAG00000007149)	rpap3 (ENSOJAG00000006998) #22	mapk12b (ENSOJAG00000006783)	mapk11 (ENSOJAG00000005708)	ENSOJAG00000005440	DENND11 (ENSOJAG00000005231)	arl1 (ENSOJAG00000005169)	ENSOJAG00000003651	lyrm5a (ENSOJAG00000023744)	dnai7 (ENSOJAG00000023740)	lrmp (ENSOJAG00000023728)	ENSOJAG00000023722	sox5 (ENSOJAG00000023569)	ETNK1 (ENSOJAG00000023499)	pyroxd1 (ENSOJAG00000023493)	ENSOJAG00000023491	ENSOJAG00000023346
Indian medaka	MODERN SPECIES	25	ENSOMEG00000023219	ENSOMEG00000023232	ENSOMEG00000023248	hcfc2 (ENSOMEG00000023260)	ELK3 (ENSOMEG00000023277)	cdk17 (ENSOMEG00000023314)	ENSOMEG00000023334	ENSOMEG00000023346	si:ch73-252i11.1 (ENSOMEG00000023360)	ETV6 (ENSOMEG00000023372)	ENSOMEG00000023376	ENSOMEG00000023392	zgc:165507 (ENSOMEG00000023409)	lrig3 (ENSOMEG00000023429)	atp23 (ENSOMEG00000023435)	ENSOMEG00000023440 #22	mapk12b (ENSOMEG00000023455)	mapk11 (ENSOMEG00000023468)	ENSOMEG00000023481	DENND11 (ENSOMEG00000023488)	arl1 (ENSOMEG00000023497)	UTP20 (ENSOMEG00000023583)	ENSOMEG00000023603	ENSOMEG00000023620	HACD3 (ENSOMEG00000023636)	SLC5A8 (ENSOMEG00000001611)	ENSOMEG00000001652	lyrm5a (ENSOMEG00000001658)	dnai7 (ENSOMEG00000001668)	lrmp (ENSOMEG00000001741)	ENSOMEG00000001760
Oryzias_a	ANCESTRAL SPECIES	53	ENSGT00940000157129.f.b	ENSGT00940000164702.a.d	ENSGT00940000164702.a.c	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT00940000159750.k	ENSGT00940000159750.l	ENSGT00940000159601	ENSGT00940000155415.lb	ENSGT00940000154649.A	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00940000155765.s.b	ENSGT00590000083189.d	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p.a	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671
Chinese medaka	MODERN SPECIES	552														lrig3 (ENSOSIG00000016286)	atp23 (ENSOSIG00000016357)	ENSOSIG00000016359 #22	mapk12b (ENSOSIG00000016361)	mapk11 (ENSOSIG00000016364)	arl1 (ENSOSIG00000016375)	ENSOSIG00000016412
Japanese Medaka HdrR	MODERN SPECIES	15	ENSORLG00000009298	hcfc2 (ENSORLG00000009281)	ENSORLG00000009264	ENSORLG00000009233	ENSORLG00000029311	si:cabz01085950.1 (ENSORLG00000009225)	ENSORLG00000030440	timp3 (ENSORLG00000009218)	ENSORLG00000009203	si:ch73-252i11.1 (ENSORLG00000009167)	ETV6 (ENSORLG00000009151)	ENSORLG00000009142	zgc:165507 (ENSORLG00000009131)	lrig3 (ENSORLG00000009105)	atp23 (ENSORLG00000009089)	rpap3 (ENSORLG00000009077) #22	mapk12b (ENSORLG00000009012)	mapk11 (ENSORLG00000008944)	ENSORLG00000008939	ENSORLG00000008925	arl1 (ENSORLG00000008909)	UTP20 (ENSORLG00000008900)	SLC5A8 (ENSORLG00000008860)	SLC5A8 (ENSORLG00000029005)	lyrm5a (ENSORLG00000022261)	dnai7 (ENSORLG00000026876)	lrmp (ENSORLG00000030083)	sox5 (ENSORLG00000008803)	ETNK1 (ENSORLG00000008790)	pyroxd1 (ENSORLG00000008764)	ENSORLG00000008741
Cyprinodontiformes	ANCESTRAL SPECIES	19	ENSGT00940000157129.f.b	ENSGT00940000164702.a	ENSGT00940000154003.A	ENSGT01050000244850.C.b.v	ENSGT00940000159750	ENSGT00940000155415.lb	ENSGT00940000159601	ENSGT00940000155415.kb.a	ENSGT00940000154649.A	ENSGT01030000234982	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00940000155765.s.b	ENSGT00590000083189.d	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o	ENSGT00390000009532.A.d.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671	ENSGT01080000257336.b.e.a.a	ENSGT01080000257336.b.e.a.b
Aplocheiloidei	ANCESTRAL SPECIES	14	ENSGT00390000001775.B	ENSGT00940000155834.i.a	ENSGT00940000157129.f.b	ENSGT00940000164702.a	ENSGT00940000154003.A	ENSGT01050000244850.C.b.v	ENSGT00940000159750	ENSGT00940000159601	ENSGT00940000155415.lb	ENSGT00940000154649.A	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT00940000155765.s.b	ENSGT00590000083189.d	ENSGT00940000155118	ENSGT00390000016813	ENSGT00940000155166.A.p	ENSGT00940000155166.A.o	ENSGT00390000001810.b	ENSGT00390000004708	ENSGT00530000063722.a	ENSGT00940000156122	ENSGT00950000182939.b.a.b	ENSGT00390000014894	ENSGT00510000048671
Mangrove rivulus	MODERN SPECIES	728															atp23 (ENSKMAG00000007633)	rpap3 (ENSKMAG00000007611) #22	mapk12b (ENSKMAG00000007576)	mapk11 (ENSKMAG00000007550)	ENSKMAG00000007507	DENND11 (ENSKMAG00000007477)
Turquoise killifish	MODERN SPECIES	177														net1 (ENSNFUG00015014304)	ENSNFUG00015015329	RPAP3 (ENSNFUG00015015353) #22	MAPK12B (ENSNFUG00015015504)	mapk11 (ENSNFUG00015015627)
Cyprinodontoidei	ANCESTRAL SPECIES	42					ENSGT00940000159750	ENSGT00940000155415.lb	ENSGT00940000159601	ENSGT00940000155415.kb.a	ENSGT00940000154649.A	ENSGT01030000234982	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT01070000253775.a.d.a.a.a.b.g.b	ENSGT01070000253775.a.d.a.a.a.b.g.a	ENSGT00510000047522	ENSGT00940000153185.a.a.a	ENSGT00390000011355.b	ENSGT00940000158018	ENSGT00940000165155	ENSGT00950000183042.a.b.a	ENSGT00940000159167	ENSGT00940000154917	ENSGT00730000111314	ENSGT00390000001702	ENSGT00940000155849.h
NAME_4	ANCESTRAL SPECIES	235						ENSGT00940000159750	ENSGT00940000155415.lb	ENSGT00940000159601	ENSGT00940000154649.A	ENSGT01030000234982	ENSGT00940000159508	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT01070000253775.a.d.a.a.a.b.g.b	ENSGT01070000253775.a.d.a.a.a.b.g.a	ENSGT00510000047522	ENSGT00940000153185.a.a.a	ENSGT00940000178178
Mummichog	MODERN SPECIES	2243						si:cabz01085950.1 (ENSFHEG00000016504)	SYN3 (ENSFHEG00000016491)	TIMP3 (ENSFHEG00000016459)	si:ch73-252i11.1 (ENSFHEG00000016439)	ENSFHEG00000016433	ETV6 (ENSFHEG00000016422)	ENSFHEG00000016388	slc16a7 (ENSFHEG00000016379)	lrig3 (ENSFHEG00000016359)	atp23 (ENSFHEG00000016351)	rpap3 (ENSFHEG00000016331) #22	mapk12b (ENSFHEG00000016284)	mapk11 (ENSFHEG00000016243)	SLC26A3 (ENSFHEG00000016173)	SLC26A3 (ENSFHEG00000015615)	cbll1 (ENSFHEG00000015604)	scube1 (ENSFHEG00000015553)	ENSFHEG00000015493	ALDH1L2 (ENSFHEG00000015472)	ENSFHEG00000015276	SLC41A2 (ENSFHEG00000015258)	ENSFHEG00000015178	nopchap1 (ENSFHEG00000015160)	chst11 (ENSFHEG00000015147)	nfybb (ENSFHEG00000015128)	podxl (ENSFHEG00000015096)
Sheepshead minnow	MODERN SPECIES	1181														lrig3 (ENSCVAG00000013272)	atp23 (ENSCVAG00000013192)	rpap3 (ENSCVAG00000013157) #22	mapk12b (ENSCVAG00000013137)	MAPK11 (ENSCVAG00000013003)	ENSCVAG00000012900	SLC26A3 (ENSCVAG00000012189)
Poeciliinae	ANCESTRAL SPECIES	19	ENSGT00550000075141	ENSGT00940000160597	ENSGT00740000116948	ENSGT00940000159750	ENSGT00940000155415.lb	ENSGT00940000159601	ENSGT00940000155415.kb.a	ENSGT00940000154649.A	ENSGT01030000234982	ENSGT00940000159508	ENSGT00940000159882	ENSGT00510000047886.b.`b	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT01070000253775.a.d.a.a.a.b.g.b	ENSGT00510000047522	ENSGT00940000153185.a.a.a	ENSGT00390000011355.b	ENSGT00940000158018	ENSGT00940000165155	ENSGT00950000183042.a.b.a	ENSGT00940000159167	ENSGT00940000154917	ENSGT00730000111314	ENSGT00390000001702	ENSGT00940000155849.h	ENSGT00940000165059.B.b
Poecilia	ANCESTRAL SPECIES	47	ENSGT00550000075141	ENSGT00940000160597	ENSGT00740000116948	ENSGT00940000159750	ENSGT00940000155415.lb	ENSGT00940000159601	ENSGT00940000155415.kb.a	ENSGT00940000154649.A	ENSGT01030000234982	ENSGT00940000159508	ENSGT00510000047886.b.`b	ENSGT00940000159882	ENSGT00940000157309	ENSGT00940000157098	ENSGT00390000010948	ENSGT00940000156749 #22	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT01070000253775.a.d.a.a.a.b.g.b	ENSGT00510000047522	ENSGT00940000153185.a.a.a	ENSGT00390000011355.b	ENSGT00940000158018	ENSGT00940000165155	ENSGT00950000183042.a.b.a	ENSGT00940000159167	ENSGT00940000154917.`b	ENSGT00730000111314	ENSGT00390000001702	ENSGT00940000155849.h	ENSGT00940000165059.B.b
NAME_6	ANCESTRAL SPECIES	162															ENSGT00390000010948.n	ENSGT00940000156749 #22	ENSGT00940000156189.a.b	ENSGT00940000160790	ENSGT01070000253775.a.d.a.a.a.b.g.b	ENSGT00510000047522	ENSGT00940000153185.a.a.a	ENSGT00390000011355.b	ENSGT00940000158018	ENSGT00940000165155	ENSGT00950000183042.a.b.a	ENSGT00940000159167	ENSGT00940000154917.`b	ENSGT00730000111314	ENSGT00390000001702	ENSGT00940000155849.h	ENSGT00940000165059.B.b
Amazon molly	DUPLICATION
Amazon molly	MODERN SPECIES	542															atp23 (ENSPFOG00000002317)	rpap3 (ENSPFOG00000002377) #22	mapk12b (ENSPFOG00000002543)	mapk11 (ENSPFOG00000002929)	slc26a3.1 (ENSPFOG00000003042)	cbll1 (ENSPFOG00000003354)	scube1 (ENSPFOG00000003476)	samm50l (ENSPFOG00000004188)	ALDH1L2 (ENSPFOG00000004387)	nopchap1 (ENSPFOG00000004728)	SLC41A2 (ENSPFOG00000004763)	chst11 (ENSPFOG00000005076)	nfybb (ENSPFOG00000005143)	podxl (ENSPFOG00000005256)	mkln1 (ENSPFOG00000005263)	net1 (ENSPFOG00000005276)	ENSPFOG00000005399
Amazon molly	MODERN SPECIES	568	ENSPFOG00000024240	ENSPFOG00000023530	ddx51 (ENSPFOG00000008508)	ENSPFOG00000008613	si:cabz01085950.1 (ENSPFOG00000008678)	SYN3 (ENSPFOG00000008733)	TIMP3 (ENSPFOG00000008932)	ENSPFOG00000009053	ENSPFOG00000009078	ETV6 (ENSPFOG00000009294)	ENSPFOG00000009359	ENSPFOG00000009362	zgc:165507 (ENSPFOG00000009405)	lrig3 (ENSPFOG00000009468)	atp23 (ENSPFOG00000009839)	rpap3 (ENSPFOG00000009898) #22	mapk12b (ENSPFOG00000010049)
Sailfin molly	DUPLICATION
Sailfin molly	MODERN SPECIES	3932																rpap3 (ENSPLAG00000018352) #22	mapk12b (ENSPLAG00000018305)
Sailfin molly	MODERN SPECIES	4002																rpap3 (ENSPLAG00000010568) #22	mapk12b (ENSPLAG00000010527)
Guppy	MODERN SPECIES	454	ENSPREG00000015966	ddx51 (ENSPREG00000015992)	ENSPREG00000016029	ENSPREG00000016048	si:cabz01085950.1 (ENSPREG00000016066)	SYN3 (ENSPREG00000016081)	TIMP3 (ENSPREG00000016092)	ENSPREG00000016110	ENSPREG00000016134	ETV6 (ENSPREG00000016146)	ENSPREG00000016161	ENSPREG00000016177	zgc:165507 (ENSPREG00000016199)	lrig3 (ENSPREG00000016215)	atp23 (ENSPREG00000016239)	rpap3 (ENSPREG00000016272) #22	mapk12b (ENSPREG00000016317)	mapk11 (ENSPREG00000016381)	slc26a3.1 (ENSPREG00000016565)	cbll1 (ENSPREG00000016614)	ENSPREG00000016638	scube1 (ENSPREG00000016657)	samm50l (ENSPREG00000016729)	ALDH1L2 (ENSPREG00000016776)	nopchap1 (ENSPREG00000016857)	SLC41A2 (ENSPREG00000016873)	chst11 (ENSPREG00000016896)	nfybb (ENSPREG00000016909)	podxl (ENSPREG00000016939)	mkln1 (ENSPREG00000016965)	net1 (ENSPREG00000017022)
Platyfish	MODERN SPECIES	8	ddx51 (ENSXMAG00000010009)	ENSXMAG00000026205	si:cabz01085950.1 (ENSXMAG00000024024)	ENSXMAG00000029704	SYN3 (ENSXMAG00000022471)	TIMP3 (ENSXMAG00000021060)	si:ch73-252i11.1 (ENSXMAG00000024405)	ENSXMAG00000027753	ENSXMAG00000027513	ENSXMAG00000027777	ENSXMAG00000021341	ENSXMAG00000030003	zgc:165507 (ENSXMAG00000010168)	lrig3 (ENSXMAG00000010178)	atp23 (ENSXMAG00000010196)	rpap3 (ENSXMAG00000010207) #22	mapk12b (ENSXMAG00000010228)	mapk11 (ENSXMAG00000010248)	slc26a3.1 (ENSXMAG00000005706)	ENSXMAG00000028438	cbll1 (ENSXMAG00000021110)	scube1 (ENSXMAG00000005343)	samm50l (ENSXMAG00000005313)	ALDH1L2 (ENSXMAG00000005276)	nopchap1 (ENSXMAG00000020873)	SLC41A2 (ENSXMAG00000005250)	chst11 (ENSXMAG00000023984)	nfybb (ENSXMAG00000005234)	podxl (ENSXMAG00000026090)	mkln1 (ENSXMAG00000005201)	net1 (ENSXMAG00000005187)
Pinecone sodierfish	MODERN SPECIES	15	ENSMMDG00005002776	ENSMMDG00005002742	ENSMMDG00005002726	ENSMMDG00005002717	ETV6 (ENSMMDG00005002706)	ENSMMDG00005002667	ENSMMDG00005002649	zgc:165507 (ENSMMDG00005002638)	lrig3 (ENSMMDG00005002555)	ENSMMDG00005024096	ENSMMDG00005024093	ENSMMDG00005024092	ENSMMDG00005024086	ENSMMDG00005024083	atp23 (ENSMMDG00005024080)	rpap3 (ENSMMDG00005024074) #22	mapk12b (ENSMMDG00005024069)	mapk11 (ENSMMDG00005024064)	slc13a4 (ENSMMDG00005024059)	zgc:162331 (ENSMMDG00005024056)	ENSMMDG00005024053	ENSMMDG00005024050	ENSMMDG00005024048	BMAL2 (ENSMMDG00005024042)	stk38l (ENSMMDG00005024036)	med21 (ENSMMDG00005024030)	fgfr1op2 (ENSMMDG00005024027)	TM7SF3 (ENSMMDG00005024025)	ENSMMDG00005024022	gas2l3 (ENSMMDG00005024020)	arid2 (ENSMMDG00005023798) #29
Cod	MODERN SPECIES	17	ENSGMOG00000007114	ENSGMOG00000001297	ENSGMOG00000001313	ENSGMOG00000032875	ENSGMOG00000005375	ENSGMOG00000031647	ENSGMOG00000034855	ENSGMOG00000026640	ENSGMOG00000001273	ENSGMOG00000023534	ENSGMOG00000010741	ENSGMOG00000023029	ENSGMOG00000008321	ENSGMOG00000003237	ENSGMOG00000023139	ENSGMOG00000006944 #22	ENSGMOG00000025053	ENSGMOG00000006914	ENSGMOG00000006902	slc26a4 (ENSGMOG00000022277)	ENSGMOG00000013150	ENSGMOG00000013133	cbll1 (ENSGMOG00000035715)	ENSGMOG00000013098	ENSGMOG00000013054	ENSGMOG00000013052	ccdc3a (ENSGMOG00000018708)	ENSGMOG00000025256	ENSGMOG00000010575	nudt5 (ENSGMOG00000010585)	FBH1 (ENSGMOG00000010594)
Spotted gar	MODERN SPECIES	674	ribc2 (ENSLOCG00000016576)	ENSLOCG00000016571	pex26 (ENSLOCG00000016568)	ENSLOCG00000016564	itfg2 (ENSLOCG00000016560)	nrip2 (ENSLOCG00000016559)	foxm1 (ENSLOCG00000016556)	RHNO1 (ENSLOCG00000016554)	TULP3 (ENSLOCG00000016553)	ENSLOCG00000016551	ptn (ENSLOCG00000016549)	chrm2a (ENSLOCG00000017918)	zgc:165507 (ENSLOCG00000016547)	lrig3 (ENSLOCG00000016545)	atp23 (ENSLOCG00000016543)	rpap3 (ENSLOCG00000016541) #22	ENSLOCG00000017917	ARHGAP8 (ENSLOCG00000016538)	ENSLOCG00000016534	nup50 (ENSLOCG00000016533)	kiaa0930 (ENSLOCG00000016527)	ENSLOCG00000016525	fbxo7 (ENSLOCG00000016522)	rtcb (ENSLOCG00000016515)	xpot (ENSLOCG00000016512)	rpl18a (ENSLOCG00000016509)	ENSLOCG00000016507	pthlha (ENSLOCG00000016505)	ENSLOCG00000016504	C11orf98 (ENSLOCG00000016502)	ENSLOCG00000016500
Reedfish	MODERN SPECIES		ENSECRG00000000607	cntn1b (ENSECRG00000000640)	nrcama (ENSECRG00000000759)	PNPLA8 (ENSECRG00000001102)	ENSECRG00000001519	ENSECRG00000001560	ENSECRG00000001580	dnajb9a (ENSECRG00000001591)	ENSECRG00000001600	ENSECRG00000001610	immp2l (ENSECRG00000001686)	LRRN3 (ENSECRG00000001825)	ENSECRG00000001834	dock4b (ENSECRG00000001878)	ENSECRG00000001965	ENSECRG00000001981 #22	tmem168a (ENSECRG00000001997)	bmt2 (ENSECRG00000002008)	gpr85 (ENSECRG00000002023)	ENSECRG00000002031	ENSECRG00000002056	ENSECRG00000002090	ENSECRG00000002108	mdfic (ENSECRG00000002128)	tfec (ENSECRG00000002146)	cpa4 (ENSECRG00000002181)	tmem209 (ENSECRG00000002204)	ahcyl2a (ENSECRG00000002269)	STRIP2 (ENSECRG00000002413)	ENSECRG00000002472	nrf1 (ENSECRG00000002488)
Elephant shark	MODERN SPECIES	1489	ENSCMIG00000016600	ENSCMIG00000016597	ENSCMIG00000016592	slc6a3 (ENSCMIG00000016555)	lpcat1 (ENSCMIG00000016500)	mrpl36 (ENSCMIG00000016477)	ndufs6 (ENSCMIG00000016474)	irx4a (ENSCMIG00000016471)	ENSCMIG00000016467	irx2a (ENSCMIG00000016464)	irx1a (ENSCMIG00000016459)	ENSCMIG00000016457	zgc:165507 (ENSCMIG00000016455)	lrig3 (ENSCMIG00000016441)	atp23 (ENSCMIG00000016428)	rpap3 (ENSCMIG00000016417) #22	ENSCMIG00000016414	AMIGO2 (ENSCMIG00000016412) #24	slc38a4 (ENSCMIG00000016279) #25	slc38a2 (ENSCMIG00000016090) #26	SLC38A1 (ENSCMIG00000016025) #27	ENSCMIG00000016010 #28	arid2 (ENSCMIG00000016002) #29	ENSCMIG00000015992	ANO6 (ENSCMIG00000015910) #30	ENSCMIG00000015848 #31	NELL2 (ENSCMIG00000015661) #32	tenm4 (ENSCMIG00000015412)	ENSCMIG00000015338	prcp (ENSCMIG00000015317)	ENSCMIG00000015306
Cyclostomata	ANCESTRAL SPECIES	474															ENSGT00390000010948	ENSGT00940000156749 #22
Lamprey	MODERN SPECIES	1892																ENSPMAG00000005227 #22	GPR62 (ENSPMAG00000005221)
Hagfish	MODERN SPECIES	439													ENSEBUG00000006814	gpkow (ENSEBUG00000001912)	atp23 (ENSEBUG00000009712)	ENSEBUG00000011618 #22	ENSEBUG00000009368	amt (ENSEBUG00000011512)	slc35e3 (ENSEBUG00000011431)	ENSEBUG00000008633	ENSEBUG00000015948	ENSEBUG00000002147	dhtkd1 (ENSEBUG00000004593)	nudt21 (ENSEBUG00000002498)	akr1b1.1 (ENSEBUG00000011693)	ENSEBUG00000008880	ENSEBUG00000010708	ENSEBUG00000002824	vbp1 (ENSEBUG00000009230)	pik3cg (ENSEBUG00000016177)	napepld (ENSEBUG00000016721)