Rodentia_A	ANCESTRAL SPECIES	18	ENSGT00940000153773.a.b.b	ENSGT00900000143156.a	ENSGT01090000260040.a.a.a.r	ENSGT00940000153773.a.b.a.b	ENSGT01090000260040.a.a.b	ENSGT00390000003465.b.b	ENSGT00940000155788 #11	ENSGT00940000158862 #12	ENSGT00390000013305.a.b #15	ENSGT00940000156357	ENSGT00440000038909 #16	ENSGT00940000159405 #17	ENSGT00950000182995.e.b #18	ENSGT00390000004263.a #19	ENSGT00390000013853 #21	ENSGT00940000158485 #22	ENSGT00390000018094 #23	ENSGT00920000149145 #24	ENSGT00390000005711 #25	ENSGT00910000147876	ENSGT00940000155236 #26	ENSGT00940000153269.b.b #27	ENSGT01030000234527.A.a.a.a #28	ENSGT00940000158307 #29	ENSGT00530000063823.b.b #30	ENSGT00940000155187.B #31	ENSGT00390000015984 #32	ENSGT00940000158117 #34	ENSGT00940000159194 #35	ENSGT00390000002661.b.w ##36	ENSGT00390000011922 #37
Hystricomorpha	ANCESTRAL SPECIES	12	ENSGT00390000017400	ENSGT00520000055667	ENSGT00940000153769.F	ENSGT00390000001515 #8	ENSGT00390000003305 #9	ENSGT00950000182863.A.b #10	ENSGT00940000155788 #11	ENSGT00940000158862 #12	ENSGT00390000013305.a.b #15	ENSGT00940000156357	ENSGT00440000038909 #16	ENSGT00940000159405 #17	ENSGT00950000182995.e.b #18	ENSGT00390000004263.a #19	ENSGT00390000013853 #21	ENSGT00940000158485 #22	ENSGT00390000018094 #23	ENSGT00920000149145 #24	ENSGT00390000005711 #25	ENSGT00940000155236 #26	ENSGT00940000153269.b.b #27	ENSGT01030000234527.A.a.a.a #28	ENSGT00940000158307 #29	ENSGT00530000063823.b.b #30	ENSGT00940000155187.B #31	ENSGT00390000015984 #32	ENSGT00940000158117 #34	ENSGT00940000159194 #35	ENSGT00390000002661.b.w ##36	ENSGT00390000011922 #37	ENSGT00530000063880.b
Naked mole-rat female	MODERN SPECIES	13	ENSHGLG00000005913 #7	MRPL13 (ENSHGLG00000036413) #8	MTBP (ENSHGLG00000008315) #9	ENSHGLG00000004847 #10	ENSHGLG00000005032 #11	ENSHGLG00000006146 #12	ENSHGLG00000007536 #13	ENSHGLG00000007855 #14	RRM2B (ENSHGLG00000008176) #15	ODF1 (ENSHGLG00000004499) #16	KLF10 (ENSHGLG00000004544) #17	Azin1 (ENSHGLG00000004640) #18	ATP6V1C1 (ENSHGLG00000004692) #19	ENSHGLG00000034928 #20	ENSHGLG00000046383 #21	FZD6 (ENSHGLG00000006472) #22	ENSHGLG00000007218 #23	SLC25A32 (ENSHGLG00000033983) #24	DCAF13 (ENSHGLG00000008862) #25	RIMS2 (ENSHGLG00000005053) #26	DCSTAMP (ENSHGLG00000010711) #27	DPYS (ENSHGLG00000011917) #28	LRP12 (ENSHGLG00000017165) #29	ZFPM2 (ENSHGLG00000015400) #30	OXR1 (ENSHGLG00000015416) #31	ABRA (ENSHGLG00000015448) #32	ENSHGLG00000015387 #33	ANGPT1 (ENSHGLG00000013880) #34	RSPO2 (ENSHGLG00000008406) #35	ENSHGLG00000008859 #36	EMC2 (ENSHGLG00000010553) #37
Hystricomorpha_a	ANCESTRAL SPECIES	9	ENSGT00390000017400	ENSGT00520000055667	ENSGT00940000153769.F	ENSGT00390000001515 #8	ENSGT00390000003305 #9	ENSGT00950000182863.A.b #10	ENSGT00940000155788 #11	ENSGT00940000158862 #12	ENSGT00390000013305.a.b #15	ENSGT00940000156357	ENSGT00440000038909 #16	ENSGT00940000159405 #17	ENSGT00950000182995.e.b #18	ENSGT00390000004263.a #19	ENSGT00390000013853 #21	ENSGT00940000158485 #22	ENSGT00390000018094 #23	ENSGT00920000149145 #24	ENSGT00390000005711 #25	ENSGT00940000155236 #26	ENSGT00940000153269.b.b #27	ENSGT01030000234527.A.a.a.a #28	ENSGT00940000158307 #29	ENSGT00530000063823.b.b #30	ENSGT00940000155187.B #31	ENSGT00390000015984 #32	ENSGT00940000158117 #34	ENSGT00940000159194 #35	ENSGT00390000002661.b.w ##36	ENSGT00390000011922 #37	ENSGT00530000063880.b
Guinea pig	MODERN SPECIES		TAF2 (ENSCPOG00000014135)	DEPTOR (ENSCPOG00000013492)	COL14A1 (ENSCPOG00000008500)	MRPL13 (ENSCPOG00000005791) #8	MTBP (ENSCPOG00000005797) #9	SNTB1 (ENSCPOG00000005807) #10	GRHL2 (ENSCPOG00000005630) #11	NCALD (ENSCPOG00000039689) #12	RRM2B (ENSCPOG00000011429) #15	UBR5 (ENSCPOG00000009637)	ODF1 (ENSCPOG00000012742) #16	KLF10 (ENSCPOG00000011105) #17	AZIN1 (ENSCPOG00000015536) #18	ATP6V1C1 (ENSCPOG00000009966) #19	BAALC (ENSCPOG00000039194) #21	FZD6 (ENSCPOG00000012281) #22	CTHRC1 (ENSCPOG00000012284) #23	SLC25A32 (ENSCPOG00000033503) #24	DCAF13 (ENSCPOG00000012291) #25	RIMS2 (ENSCPOG00000007288) #26	DCSTAMP (ENSCPOG00000022935) #27	DPYS (ENSCPOG00000005042) #28	LRP12 (ENSCPOG00000024738) #29	ZFPM2 (ENSCPOG00000014225) #30	OXR1 (ENSCPOG00000023091) #31	ABRA (ENSCPOG00000026994) #32	ANGPT1 (ENSCPOG00000002490) #34	RSPO2 (ENSCPOG00000040689) #35	EIF3E (ENSCPOG00000006266) ##36	EMC2 (ENSCPOG00000011570) #37	TMEM74 (ENSCPOG00000040808)
Hystricomorpha_b	ANCESTRAL SPECIES	25	ENSGT00390000000420.d	ENSGT00390000017400	ENSGT00520000055667	ENSGT00940000153769.F	ENSGT00390000001515 #8	ENSGT00390000003305 #9	ENSGT00950000182863.A.b #10	ENSGT00940000155788 #11	ENSGT00940000158862 #12	ENSGT00390000013305.a.b #15	ENSGT00940000156357	ENSGT00440000038909 #16	ENSGT00940000159405 #17	ENSGT00950000182995.e.b #18	ENSGT00390000004263.a #19	ENSGT00940000158485 #22	ENSGT00390000018094 #23	ENSGT00920000149145 #24	ENSGT00390000005711 #25	ENSGT00940000155236 #26	ENSGT00940000153269.b.b #27	ENSGT01030000234527.A.a.a.a #28	ENSGT00940000158307 #29	ENSGT00530000063823.b.b #30	ENSGT00940000155187.B #31	ENSGT00390000015984 #32	ENSGT00940000158117 #34	ENSGT00940000159194 #35	ENSGT00390000002661.b.w ##36	ENSGT00390000011922 #37
Long-tailed chinchilla	MODERN SPECIES	124	ENSCLAG00000009350	ENSCLAG00000005610	DEPTOR (ENSCLAG00000006264)	COL14A1 (ENSCLAG00000012798)	MRPL13 (ENSCLAG00000005646) #8	MTBP (ENSCLAG00000005869) #9	SNTB1 (ENSCLAG00000007591) #10	GRHL2 (ENSCLAG00000004852) #11	NCALD (ENSCLAG00000005101) #12	RRM2B (ENSCLAG00000005652) #15	UBR5 (ENSCLAG00000005604)	ODF1 (ENSCLAG00000009658) #16	KLF10 (ENSCLAG00000006194) #17	Azin1 (ENSCLAG00000006685) #18	ATP6V1C1 (ENSCLAG00000007454) #19	FZD6 (ENSCLAG00000004386) #22	ENSCLAG00000004942 #23	SLC25A32 (ENSCLAG00000005938) #24	DCAF13 (ENSCLAG00000006565) #25	RIMS2 (ENSCLAG00000011574) #26	DCSTAMP (ENSCLAG00000010026) #27	DPYS (ENSCLAG00000010295) #28	LRP12 (ENSCLAG00000005081) #29	ZFPM2 (ENSCLAG00000005797) #30	OXR1 (ENSCLAG00000006103) #31	ABRA (ENSCLAG00000006852) #32	ENSCLAG00000007287	ANGPT1 (ENSCLAG00000014625) #34	RSPO2 (ENSCLAG00000013840) #35	EIF3E (ENSCLAG00000014021) ##36	EMC2 (ENSCLAG00000004492) #37
Degu	MODERN SPECIES	189	DEPTOR (ENSODEG00000001135)	COL14A1 (ENSODEG00000000812)	ENSODEG00000001980	MRPL13 (ENSODEG00000001950) #8	MTBP (ENSODEG00000001856) #9	SNTB1 (ENSODEG00000001798) #10	GRHL2 (ENSODEG00000001720) #11	NCALD (ENSODEG00000001634) #12	ENSODEG00000001601	ENSODEG00000001583 #15	UBR5 (ENSODEG00000001200)	ODF1 (ENSODEG00000001029) #16	KLF10 (ENSODEG00000001013) #17	Azin1 (ENSODEG00000000999)	ENSODEG00000000974 #19	FZD6 (ENSODEG00000000950) #22	ENSODEG00000000941 #23	SLC25A32 (ENSODEG00000000912) #24	DCAF13 (ENSODEG00000000870) #25	ENSODEG00000000845	ENSODEG00000018633	ENSODEG00000000823	RIMS2 (ENSODEG00000001405) #26	DCSTAMP (ENSODEG00000001297) #27	DPYS (ENSODEG00000001258) #28	LRP12 (ENSODEG00000001219) #29	ENSODEG00000001195	ZFPM2 (ENSODEG00000001176) #30	ENSODEG00000001159	ENSODEG00000001148 #31	ABRA (ENSODEG00000001137) #32
Sciuridae	ANCESTRAL SPECIES	17	ENSGT00940000153773.a.b.b	ENSGT00900000143156.a	ENSGT01090000260040.a.a.a.r	ENSGT00940000153773.a.b.a.b	ENSGT01090000260040.a.a.b	ENSGT00390000003465.b.b	ENSGT00940000155788 #11	ENSGT00940000158862 #12	ENSGT00390000013305.a.b #15	ENSGT00940000156357	ENSGT00440000038909 #16	ENSGT00940000159405 #17	ENSGT00950000182995.e.b #18	ENSGT00390000004263.a #19	ENSGT00390000013853 #21	ENSGT00940000158485 #22	ENSGT00390000018094 #23	ENSGT00920000149145 #24	ENSGT00390000005711 #25	ENSGT00910000147876	ENSGT00940000155236 #26	ENSGT00940000153269.b.b #27	ENSGT01030000234527.A.a.a.a #28	ENSGT00940000158307 #29	ENSGT00530000063823.b.b #30	ENSGT00940000155187.B #31	ENSGT00390000015984 #32	ENSGT00940000158117 #34	ENSGT00940000159194 #35	ENSGT00390000002661.b.w ##36	ENSGT00390000011922 #37
Marmotini	ANCESTRAL SPECIES	10	ENSGT00940000153773.a.b.b	ENSGT00900000143156.a	ENSGT01090000260040.a.a.a.r	ENSGT00940000153773.a.b.a.b	ENSGT01090000260040.a.a.b	ENSGT00390000003465.b.b	ENSGT00940000155788 #11	ENSGT00940000158862 #12	ENSGT00390000013305.a.b #15	ENSGT00940000156357	ENSGT00440000038909 #16	ENSGT00940000159405 #17	ENSGT00950000182995.e.b #18	ENSGT00390000004263.a #19	ENSGT00390000013853 #21	ENSGT00940000158485 #22	ENSGT00390000018094 #23	ENSGT00920000149145 #24	ENSGT00390000005711 #25	ENSGT00940000155236 #26	ENSGT00940000153269.b.b #27	ENSGT01030000234527.A.a.a.a #28	ENSGT00940000158307 #29	ENSGT00530000063823.b.b #30	ENSGT00940000155187.B #31	ENSGT00390000015984 #32	ENSGT00940000158117 #34	ENSGT00940000159194 #35	ENSGT00390000002661.b.w ##36	ENSGT00390000011922 #37	ENSGT00530000063880.b
Marmotini_b	ANCESTRAL SPECIES	6	ENSGT00940000158703	ENSGT00940000157094	ENSGT00950000183212.A	ENSGT00940000153773.a.b.b	ENSGT01090000260040.a.a.b	ENSGT00390000003465.b.b	ENSGT00940000155788 #11	ENSGT00940000158862 #12	ENSGT00390000013305.a.b #15	ENSGT00940000156357	ENSGT00440000038909 #16	ENSGT00940000159405 #17	ENSGT00950000182995.e.b #18	ENSGT00390000004263.a #19	ENSGT00390000013853 #21	ENSGT00940000158485 #22	ENSGT00390000018094 #23	ENSGT00920000149145 #24	ENSGT00390000005711 #25	ENSGT00910000147876	ENSGT00940000155236 #26	ENSGT00940000153269.b.b #27	ENSGT01030000234527.A.a.a.a #28	ENSGT00940000158307 #29	ENSGT00530000063823.b.b #30	ENSGT00940000155187.B #31	ENSGT00390000015984 #32	ENSGT00940000158117 #34	ENSGT00940000159194 #35	ENSGT00390000002661.b.w ##36	ENSGT00390000011922 #37
Arctic ground squirrel	MODERN SPECIES	1	ENSUPAG00010012795	SNX31 (ENSUPAG00010012764)	PABPC1 (ENSUPAG00010012731)	YWHAZ (ENSUPAG00010012698)	ENSUPAG00010012678	GRHL2 (ENSUPAG00010012657) #11	NCALD (ENSUPAG00010012610) #12	RRM2B (ENSUPAG00010012580) #15	UBR5 (ENSUPAG00010012476)	ODF1 (ENSUPAG00010012459) #16	KLF10 (ENSUPAG00010012449) #17	AZIN1 (ENSUPAG00010012419) #18	ATP6V1C1 (ENSUPAG00010012403) #19	BAALC (ENSUPAG00010012395) #21	ENSUPAG00010012386	FZD6 (ENSUPAG00010012378) #22	CTHRC1 (ENSUPAG00010012368) #23	SLC25A32 (ENSUPAG00010012365) #24	DCAF13 (ENSUPAG00010012344) #25	ENSUPAG00010012338	ENSUPAG00010012333	ENSUPAG00010012323 #26
Squirrel	MODERN SPECIES	70	PABPC1 (ENSSTOG00000016395)	ENSSTOG00000034817	ENSSTOG00000023864	ZNF706 (ENSSTOG00000022580)	ENSSTOG00000031885	ENSSTOG00000030933	GRHL2 (ENSSTOG00000001498) #11	NCALD (ENSSTOG00000013760) #12	RRM2B (ENSSTOG00000008543) #15	UBR5 (ENSSTOG00000005328)	ODF1 (ENSSTOG00000029127) #16	KLF10 (ENSSTOG00000027022) #17	Azin1 (ENSSTOG00000008823) #18	ATP6V1C1 (ENSSTOG00000028201) #19	BAALC (ENSSTOG00000031061) #21	FZD6 (ENSSTOG00000007962) #22	CTHRC1 (ENSSTOG00000007977) #23	SLC25A32 (ENSSTOG00000007983) #24	DCAF13 (ENSSTOG00000008009) #25	ENSSTOG00000010449	RIMS2 (ENSSTOG00000012081) #26	DCSTAMP (ENSSTOG00000020933) #27	DPYS (ENSSTOG00000013065) #28	LRP12 (ENSSTOG00000013074) #29	ZFPM2 (ENSSTOG00000020729) #30	OXR1 (ENSSTOG00000005468) #31	ABRA (ENSSTOG00000011664) #32	ANGPT1 (ENSSTOG00000008023) #34	RSPO2 (ENSSTOG00000021427) #35	EIF3E (ENSSTOG00000008976) ##36	EMC2 (ENSSTOG00000007594) #37
Alpin marmot	MODERN SPECIES	18	ENSMMMG00000016116	ENSMMMG00000016121	RNF19A (ENSMMMG00000016129)	ANKRD46 (ENSMMMG00000016148)	SNX31 (ENSMMMG00000016151)	PABPC1 (ENSMMMG00000016183)	ENSMMMG00000016188	GRHL2 (ENSMMMG00000016231) #11	NCALD (ENSMMMG00000016254) #12	RRM2B (ENSMMMG00000016263) #15	UBR5 (ENSMMMG00000016293)	ODF1 (ENSMMMG00000016389) #16	KLF10 (ENSMMMG00000016396) #17	AZIN1 (ENSMMMG00000016403) #18	ATP6V1C1 (ENSMMMG00000016414) #19	FZD6 (ENSMMMG00000016434) #22	CTHRC1 (ENSMMMG00000016449) #23	SLC25A32 (ENSMMMG00000016463) #24	DCAF13 (ENSMMMG00000016469) #25	RIMS2 (ENSMMMG00000016495) #26	DCSTAMP (ENSMMMG00000016596) #27	DPYS (ENSMMMG00000016604) #28	LRP12 (ENSMMMG00000016608) #29	ENSMMMG00000016628	ZFPM2 (ENSMMMG00000016650) #30	OXR1 (ENSMMMG00000016662) #31	ABRA (ENSMMMG00000016895) #32	ANGPT1 (ENSMMMG00000016901) #34	RSPO2 (ENSMMMG00000016913) #35	EIF3E (ENSMMMG00000016929) ##36	EMC2 (ENSMMMG00000016935) #37
Eurasian red squirrel	MODERN SPECIES		SNX31 (ENSSVLG00005003271)	PABPC1 (ENSSVLG00005003305)	ENSSVLG00005003330	ENSSVLG00005003357	ENSSVLG00005003378	GRHL2 (ENSSVLG00005000203) #11	NCALD (ENSSVLG00005000221) #12	RRM2B (ENSSVLG00005000261) #15	ENSSVLG00005000294	ODF1 (ENSSVLG00005000313) #16	KLF10 (ENSSVLG00005000329) #17	ENSSVLG00005000347	AZIN1 (ENSSVLG00005000364) #18	ATP6V1C1 (ENSSVLG00005000386) #19	BAALC (ENSSVLG00005000430) #21	FZD6 (ENSSVLG00005000456) #22	CTHRC1 (ENSSVLG00005000467) #23	ENSSVLG00005000487 #24	DCAF13 (ENSSVLG00005000508) #25	ENSSVLG00005000543 #24	ENSSVLG00005000567	RIMS2 (ENSSVLG00005000655) #26	ENSSVLG00005000780 #27	DPYS (ENSSVLG00005000796) #28	LRP12 (ENSSVLG00005000829) #29	ZFPM2 (ENSSVLG00005000863) #30	OXR1 (ENSSVLG00005000991) #31	ABRA (ENSSVLG00005001075) #32	ANGPT1 (ENSSVLG00005001092) #34	RSPO2 (ENSSVLG00005001118) #35	ENSSVLG00005001155 ##36