Rodentia_A	ANCESTRAL SPECIES	18	ENSGT00940000153773.a.b.b #7	ENSGT00900000143156.a #8	ENSGT01090000260040.a.a.a.r #9	ENSGT00940000153773.a.b.a.b ##7	ENSGT01090000260040.a.a.b ##9	ENSGT00390000003465.b.b #10	ENSGT00940000155788 #13	ENSGT00940000158862 #14	ENSGT00390000013305.a.b #15	ENSGT00940000156357 #16	ENSGT00440000038909 #17	ENSGT00940000159405 #18	ENSGT00950000182995.e.b #19	ENSGT00390000004263.a #20	ENSGT00390000013853 #21	ENSGT00940000158485 #22	ENSGT00390000018094 #23	ENSGT00920000149145 #24	ENSGT00390000005711 #25	ENSGT00910000147876	ENSGT00940000155236 #27	ENSGT00940000153269.b.b #28	ENSGT01030000234527.A.a.a.a #29	ENSGT00940000158307 #30	ENSGT00530000063823.b.b #31	ENSGT00940000155187.B #32	ENSGT00390000015984 #33	ENSGT00940000158117 #34	ENSGT00940000159194 #35	ENSGT00390000002661.b.w #36	ENSGT00390000011922 #37
Sciuridae	ANCESTRAL SPECIES	17	ENSGT00940000153773.a.b.b #7	ENSGT00900000143156.a #8	ENSGT01090000260040.a.a.a.r #9	ENSGT00940000153773.a.b.a.b ##7	ENSGT01090000260040.a.a.b ##9	ENSGT00390000003465.b.b #10	ENSGT00940000155788 #13	ENSGT00940000158862 #14	ENSGT00390000013305.a.b #15	ENSGT00940000156357 #16	ENSGT00440000038909 #17	ENSGT00940000159405 #18	ENSGT00950000182995.e.b #19	ENSGT00390000004263.a #20	ENSGT00390000013853 #21	ENSGT00940000158485 #22	ENSGT00390000018094 #23	ENSGT00920000149145 #24	ENSGT00390000005711 #25	ENSGT00910000147876	ENSGT00940000155236 #27	ENSGT00940000153269.b.b #28	ENSGT01030000234527.A.a.a.a #29	ENSGT00940000158307 #30	ENSGT00530000063823.b.b #31	ENSGT00940000155187.B #32	ENSGT00390000015984 #33	ENSGT00940000158117 #34	ENSGT00940000159194 #35	ENSGT00390000002661.b.w #36	ENSGT00390000011922 #37
Marmotini	ANCESTRAL SPECIES	10	ENSGT00940000153773.a.b.b #7	ENSGT00900000143156.a #8	ENSGT01090000260040.a.a.a.r #9	ENSGT00940000153773.a.b.a.b ##7	ENSGT01090000260040.a.a.b ##9	ENSGT00390000003465.b.b #10	ENSGT00940000155788 #13	ENSGT00940000158862 #14	ENSGT00390000013305.a.b #15	ENSGT00940000156357 #16	ENSGT00440000038909 #17	ENSGT00940000159405 #18	ENSGT00950000182995.e.b #19	ENSGT00390000004263.a #20	ENSGT00390000013853 #21	ENSGT00940000158485 #22	ENSGT00390000018094 #23	ENSGT00920000149145 #24	ENSGT00390000005711 #25	ENSGT00940000155236 #27	ENSGT00940000153269.b.b #28	ENSGT01030000234527.A.a.a.a #29	ENSGT00940000158307 #30	ENSGT00530000063823.b.b #31	ENSGT00940000155187.B #32	ENSGT00390000015984 #33	ENSGT00940000158117 #34	ENSGT00940000159194 #35	ENSGT00390000002661.b.w #36	ENSGT00390000011922 #37	ENSGT00530000063880.b
Marmotini_b	ANCESTRAL SPECIES	6	ENSGT00940000158703	ENSGT00940000157094	ENSGT00950000183212.A	ENSGT00940000153773.a.b.b #7	ENSGT01090000260040.a.a.b ##9	ENSGT00390000003465.b.b #10	ENSGT00940000155788 #13	ENSGT00940000158862 #14	ENSGT00390000013305.a.b #15	ENSGT00940000156357 #16	ENSGT00440000038909 #17	ENSGT00940000159405 #18	ENSGT00950000182995.e.b #19	ENSGT00390000004263.a #20	ENSGT00390000013853 #21	ENSGT00940000158485 #22	ENSGT00390000018094 #23	ENSGT00920000149145 #24	ENSGT00390000005711 #25	ENSGT00910000147876	ENSGT00940000155236 #27	ENSGT00940000153269.b.b #28	ENSGT01030000234527.A.a.a.a #29	ENSGT00940000158307 #30	ENSGT00530000063823.b.b #31	ENSGT00940000155187.B #32	ENSGT00390000015984 #33	ENSGT00940000158117 #34	ENSGT00940000159194 #35	ENSGT00390000002661.b.w #36	ENSGT00390000011922 #37
Squirrel	MODERN SPECIES	70	PABPC1 (ENSSTOG00000016395) #7	ENSSTOG00000034817 #8	ENSSTOG00000023864 #9	ZNF706 (ENSSTOG00000022580) #10	ENSSTOG00000031885 #11	ENSSTOG00000030933 #12	GRHL2 (ENSSTOG00000001498) #13	NCALD (ENSSTOG00000013760) #14	RRM2B (ENSSTOG00000008543) #15	UBR5 (ENSSTOG00000005328) #16	ODF1 (ENSSTOG00000029127) #17	KLF10 (ENSSTOG00000027022) #18	Azin1 (ENSSTOG00000008823) #19	ATP6V1C1 (ENSSTOG00000028201) #20	BAALC (ENSSTOG00000031061) #21	FZD6 (ENSSTOG00000007962) #22	CTHRC1 (ENSSTOG00000007977) #23	SLC25A32 (ENSSTOG00000007983) #24	DCAF13 (ENSSTOG00000008009) #25	ENSSTOG00000010449 #26	RIMS2 (ENSSTOG00000012081) #27	DCSTAMP (ENSSTOG00000020933) #28	DPYS (ENSSTOG00000013065) #29	LRP12 (ENSSTOG00000013074) #30	ZFPM2 (ENSSTOG00000020729) #31	OXR1 (ENSSTOG00000005468) #32	ABRA (ENSSTOG00000011664) #33	ANGPT1 (ENSSTOG00000008023) #34	RSPO2 (ENSSTOG00000021427) #35	EIF3E (ENSSTOG00000008976) #36	EMC2 (ENSSTOG00000007594) #37
Arctic ground squirrel	MODERN SPECIES	1	ENSUPAG00010012795	SNX31 (ENSUPAG00010012764)	PABPC1 (ENSUPAG00010012731) #7	YWHAZ (ENSUPAG00010012698) ##9	ENSUPAG00010012678 #10	GRHL2 (ENSUPAG00010012657) #13	NCALD (ENSUPAG00010012610) #14	RRM2B (ENSUPAG00010012580) #15	UBR5 (ENSUPAG00010012476) #16	ODF1 (ENSUPAG00010012459) #17	KLF10 (ENSUPAG00010012449) #18	AZIN1 (ENSUPAG00010012419) #19	ATP6V1C1 (ENSUPAG00010012403) #20	BAALC (ENSUPAG00010012395) #21	ENSUPAG00010012386	FZD6 (ENSUPAG00010012378) #22	CTHRC1 (ENSUPAG00010012368) #23	SLC25A32 (ENSUPAG00010012365) #24	DCAF13 (ENSUPAG00010012344) #25	ENSUPAG00010012338	ENSUPAG00010012333	ENSUPAG00010012323 #27
Alpin marmot	MODERN SPECIES	18	ENSMMMG00000016116	ENSMMMG00000016121	RNF19A (ENSMMMG00000016129)	ANKRD46 (ENSMMMG00000016148)	SNX31 (ENSMMMG00000016151)	PABPC1 (ENSMMMG00000016183) ##7	ENSMMMG00000016188 ##9	GRHL2 (ENSMMMG00000016231) #13	NCALD (ENSMMMG00000016254) #14	RRM2B (ENSMMMG00000016263) #15	UBR5 (ENSMMMG00000016293) #16	ODF1 (ENSMMMG00000016389) #17	KLF10 (ENSMMMG00000016396) #18	AZIN1 (ENSMMMG00000016403) #19	ATP6V1C1 (ENSMMMG00000016414) #20	FZD6 (ENSMMMG00000016434) #22	CTHRC1 (ENSMMMG00000016449) #23	SLC25A32 (ENSMMMG00000016463) #24	DCAF13 (ENSMMMG00000016469) #25	RIMS2 (ENSMMMG00000016495) #27	DCSTAMP (ENSMMMG00000016596) #28	DPYS (ENSMMMG00000016604) #29	LRP12 (ENSMMMG00000016608) #30	ENSMMMG00000016628	ZFPM2 (ENSMMMG00000016650) #31	OXR1 (ENSMMMG00000016662) #32	ABRA (ENSMMMG00000016895) #33	ANGPT1 (ENSMMMG00000016901) #34	RSPO2 (ENSMMMG00000016913) #35	EIF3E (ENSMMMG00000016929) #36	EMC2 (ENSMMMG00000016935) #37
Eurasian red squirrel	MODERN SPECIES		SNX31 (ENSSVLG00005003271)	PABPC1 (ENSSVLG00005003305) #7	ENSSVLG00005003330 #9	ENSSVLG00005003357 #10	ENSSVLG00005003378	GRHL2 (ENSSVLG00005000203) #13	NCALD (ENSSVLG00005000221) #14	RRM2B (ENSSVLG00005000261) #15	ENSSVLG00005000294 #16	ODF1 (ENSSVLG00005000313) #17	KLF10 (ENSSVLG00005000329) #18	ENSSVLG00005000347	AZIN1 (ENSSVLG00005000364) #19	ATP6V1C1 (ENSSVLG00005000386) #20	BAALC (ENSSVLG00005000430) #21	FZD6 (ENSSVLG00005000456) #22	CTHRC1 (ENSSVLG00005000467) #23	ENSSVLG00005000487 #24	DCAF13 (ENSSVLG00005000508) #25	ENSSVLG00005000543 #24	ENSSVLG00005000567	RIMS2 (ENSSVLG00005000655) #27	ENSSVLG00005000780 #28	DPYS (ENSSVLG00005000796) #29	LRP12 (ENSSVLG00005000829) #30	ZFPM2 (ENSSVLG00005000863) #31	OXR1 (ENSSVLG00005000991) #32	ABRA (ENSSVLG00005001075) #33	ANGPT1 (ENSSVLG00005001092) #34	RSPO2 (ENSSVLG00005001118) #35	ENSSVLG00005001155 #36
Hystricomorpha	ANCESTRAL SPECIES	12	ENSGT00390000017400	ENSGT00520000055667	ENSGT00940000153769.F	ENSGT00390000001515	ENSGT00390000003305	ENSGT00950000182863.A.b	ENSGT00940000155788 #13	ENSGT00940000158862 #14	ENSGT00390000013305.a.b #15	ENSGT00940000156357 #16	ENSGT00440000038909 #17	ENSGT00940000159405 #18	ENSGT00950000182995.e.b #19	ENSGT00390000004263.a #20	ENSGT00390000013853 #21	ENSGT00940000158485 #22	ENSGT00390000018094 #23	ENSGT00920000149145 #24	ENSGT00390000005711 #25	ENSGT00940000155236 #27	ENSGT00940000153269.b.b #28	ENSGT01030000234527.A.a.a.a #29	ENSGT00940000158307 #30	ENSGT00530000063823.b.b #31	ENSGT00940000155187.B #32	ENSGT00390000015984 #33	ENSGT00940000158117 #34	ENSGT00940000159194 #35	ENSGT00390000002661.b.w #36	ENSGT00390000011922 #37	ENSGT00530000063880.b
Hystricomorpha_a	ANCESTRAL SPECIES	9	ENSGT00390000017400	ENSGT00520000055667	ENSGT00940000153769.F	ENSGT00390000001515	ENSGT00390000003305	ENSGT00950000182863.A.b	ENSGT00940000155788 #13	ENSGT00940000158862 #14	ENSGT00390000013305.a.b #15	ENSGT00940000156357 #16	ENSGT00440000038909 #17	ENSGT00940000159405 #18	ENSGT00950000182995.e.b #19	ENSGT00390000004263.a #20	ENSGT00390000013853 #21	ENSGT00940000158485 #22	ENSGT00390000018094 #23	ENSGT00920000149145 #24	ENSGT00390000005711 #25	ENSGT00940000155236 #27	ENSGT00940000153269.b.b #28	ENSGT01030000234527.A.a.a.a #29	ENSGT00940000158307 #30	ENSGT00530000063823.b.b #31	ENSGT00940000155187.B #32	ENSGT00390000015984 #33	ENSGT00940000158117 #34	ENSGT00940000159194 #35	ENSGT00390000002661.b.w #36	ENSGT00390000011922 #37	ENSGT00530000063880.b
Guinea pig	MODERN SPECIES		TAF2 (ENSCPOG00000014135)	DEPTOR (ENSCPOG00000013492)	COL14A1 (ENSCPOG00000008500)	MRPL13 (ENSCPOG00000005791)	MTBP (ENSCPOG00000005797)	SNTB1 (ENSCPOG00000005807)	GRHL2 (ENSCPOG00000005630) #13	NCALD (ENSCPOG00000039689) #14	RRM2B (ENSCPOG00000011429) #15	UBR5 (ENSCPOG00000009637) #16	ODF1 (ENSCPOG00000012742) #17	KLF10 (ENSCPOG00000011105) #18	AZIN1 (ENSCPOG00000015536) #19	ATP6V1C1 (ENSCPOG00000009966) #20	BAALC (ENSCPOG00000039194) #21	FZD6 (ENSCPOG00000012281) #22	CTHRC1 (ENSCPOG00000012284) #23	SLC25A32 (ENSCPOG00000033503) #24	DCAF13 (ENSCPOG00000012291) #25	RIMS2 (ENSCPOG00000007288) #27	DCSTAMP (ENSCPOG00000022935) #28	DPYS (ENSCPOG00000005042) #29	LRP12 (ENSCPOG00000024738) #30	ZFPM2 (ENSCPOG00000014225) #31	OXR1 (ENSCPOG00000023091) #32	ABRA (ENSCPOG00000026994) #33	ANGPT1 (ENSCPOG00000002490) #34	RSPO2 (ENSCPOG00000040689) #35	EIF3E (ENSCPOG00000006266) #36	EMC2 (ENSCPOG00000011570) #37	TMEM74 (ENSCPOG00000040808)
Hystricomorpha_b	ANCESTRAL SPECIES	25	ENSGT00390000000420.d	ENSGT00390000017400	ENSGT00520000055667	ENSGT00940000153769.F	ENSGT00390000001515	ENSGT00390000003305	ENSGT00950000182863.A.b	ENSGT00940000155788 #13	ENSGT00940000158862 #14	ENSGT00390000013305.a.b #15	ENSGT00940000156357 #16	ENSGT00440000038909 #17	ENSGT00940000159405 #18	ENSGT00950000182995.e.b #19	ENSGT00390000004263.a #20	ENSGT00940000158485 #22	ENSGT00390000018094 #23	ENSGT00920000149145 #24	ENSGT00390000005711 #25	ENSGT00940000155236 #27	ENSGT00940000153269.b.b #28	ENSGT01030000234527.A.a.a.a #29	ENSGT00940000158307 #30	ENSGT00530000063823.b.b #31	ENSGT00940000155187.B #32	ENSGT00390000015984 #33	ENSGT00940000158117 #34	ENSGT00940000159194 #35	ENSGT00390000002661.b.w #36	ENSGT00390000011922 #37
Long-tailed chinchilla	MODERN SPECIES	124	ENSCLAG00000009350	ENSCLAG00000005610	DEPTOR (ENSCLAG00000006264)	COL14A1 (ENSCLAG00000012798)	MRPL13 (ENSCLAG00000005646)	MTBP (ENSCLAG00000005869)	SNTB1 (ENSCLAG00000007591)	GRHL2 (ENSCLAG00000004852) #13	NCALD (ENSCLAG00000005101) #14	RRM2B (ENSCLAG00000005652) #15	UBR5 (ENSCLAG00000005604) #16	ODF1 (ENSCLAG00000009658) #17	KLF10 (ENSCLAG00000006194) #18	Azin1 (ENSCLAG00000006685) #19	ATP6V1C1 (ENSCLAG00000007454) #20	FZD6 (ENSCLAG00000004386) #22	ENSCLAG00000004942 #23	SLC25A32 (ENSCLAG00000005938) #24	DCAF13 (ENSCLAG00000006565) #25	RIMS2 (ENSCLAG00000011574) #27	DCSTAMP (ENSCLAG00000010026) #28	DPYS (ENSCLAG00000010295) #29	LRP12 (ENSCLAG00000005081) #30	ZFPM2 (ENSCLAG00000005797) #31	OXR1 (ENSCLAG00000006103) #32	ABRA (ENSCLAG00000006852) #33	ENSCLAG00000007287	ANGPT1 (ENSCLAG00000014625) #34	RSPO2 (ENSCLAG00000013840) #35	EIF3E (ENSCLAG00000014021) #36	EMC2 (ENSCLAG00000004492) #37
Degu	MODERN SPECIES	189	DEPTOR (ENSODEG00000001135)	COL14A1 (ENSODEG00000000812)	ENSODEG00000001980	MRPL13 (ENSODEG00000001950)	MTBP (ENSODEG00000001856)	SNTB1 (ENSODEG00000001798)	GRHL2 (ENSODEG00000001720) #13	NCALD (ENSODEG00000001634) #14	ENSODEG00000001601	ENSODEG00000001583 #15	UBR5 (ENSODEG00000001200) #16	ODF1 (ENSODEG00000001029) #17	KLF10 (ENSODEG00000001013) #18	Azin1 (ENSODEG00000000999)	ENSODEG00000000974 #20	FZD6 (ENSODEG00000000950) #22	ENSODEG00000000941 #23	SLC25A32 (ENSODEG00000000912) #24	DCAF13 (ENSODEG00000000870) #25	ENSODEG00000000845	ENSODEG00000018633	ENSODEG00000000823	RIMS2 (ENSODEG00000001405) #27	DCSTAMP (ENSODEG00000001297) #28	DPYS (ENSODEG00000001258) #29	LRP12 (ENSODEG00000001219) #30	ENSODEG00000001195	ZFPM2 (ENSODEG00000001176) #31	ENSODEG00000001159	ENSODEG00000001148 #32	ABRA (ENSODEG00000001137) #33
Naked mole-rat female	MODERN SPECIES	13	ENSHGLG00000005913	MRPL13 (ENSHGLG00000036413)	MTBP (ENSHGLG00000008315)	ENSHGLG00000004847	ENSHGLG00000005032 #13	ENSHGLG00000006146 #14	ENSHGLG00000007536	ENSHGLG00000007855	RRM2B (ENSHGLG00000008176) #15	ODF1 (ENSHGLG00000004499) #17	KLF10 (ENSHGLG00000004544) #18	Azin1 (ENSHGLG00000004640) #19	ATP6V1C1 (ENSHGLG00000004692) #20	ENSHGLG00000034928	ENSHGLG00000046383 #21	FZD6 (ENSHGLG00000006472) #22	ENSHGLG00000007218 #23	SLC25A32 (ENSHGLG00000033983) #24	DCAF13 (ENSHGLG00000008862) #25	RIMS2 (ENSHGLG00000005053) #27	DCSTAMP (ENSHGLG00000010711) #28	DPYS (ENSHGLG00000011917) #29	LRP12 (ENSHGLG00000017165) #30	ZFPM2 (ENSHGLG00000015400) #31	OXR1 (ENSHGLG00000015416) #32	ABRA (ENSHGLG00000015448) #33	ENSHGLG00000015387	ANGPT1 (ENSHGLG00000013880) #34	RSPO2 (ENSHGLG00000008406) #35	ENSHGLG00000008859 ##36	EMC2 (ENSHGLG00000010553) #37