Vertebrata	ANCESTRAL SPECIES	898																ENSGT00940000158653 #22	ENSGT00940000157309
Gnathostomata	ANCESTRAL SPECIES	45	ENSGT00940000155048	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT00940000153456.b.b	ENSGT01030000234637.b.d	ENSGT00940000173126	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32
Euteleostomi	ANCESTRAL SPECIES	9	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT00940000153456.b.b	ENSGT01030000234637.b.d.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00940000173126	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00390000007605	ENSGT00940000158065	ENSGT00390000009678
Sarcopterygii	ANCESTRAL SPECIES	6	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT00940000153456.b.b	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00940000173126	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00390000011238	ENSGT00940000165309	ENSGT00730000111641 #33	ENSGT00940000159892 #34
Tetrapoda	ANCESTRAL SPECIES	14	ENSGT00940000155048	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00390000011238	ENSGT00940000165309	ENSGT00730000111641 #33	ENSGT00940000159892 #34
Amniota	ANCESTRAL SPECIES	22	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00390000011238	ENSGT00940000165309	ENSGT00730000111641 #33	ENSGT00940000159892 #34
Mammalia	ANCESTRAL SPECIES	18	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00650000094763 #35	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Theria	ANCESTRAL SPECIES	28	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00650000094763 #35	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Eutheria	ANCESTRAL SPECIES	14	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00940000164126 #7	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00650000094763 #35	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Boreoeutheria	ANCESTRAL SPECIES	2	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00940000164126 #7	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00650000094763 #35	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Euarchontoglires	ANCESTRAL SPECIES	2	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00940000164126 #7	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00650000094763 #35	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Primates	ANCESTRAL SPECIES	1	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00940000164126 #7	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00650000094763 #35	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Strepsirrhini	ANCESTRAL SPECIES	1	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00940000164126 #7	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00650000094763 #35	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Bushbaby	MODERN SPECIES	130	ENSOGAG00000030192 #7	C3orf49 (ENSOGAG00000015268) #8	THOC7 (ENSOGAG00000024865) #9	ATXN7 (ENSOGAG00000031555) #10	PSMD6 (ENSOGAG00000015279) #11	ENSOGAG00000028241 #12	PRICKLE2 (ENSOGAG00000009507) #13	ADAMTS9 (ENSOGAG00000015548) #14	MAGI1 (ENSOGAG00000000286) #15	ENSOGAG00000033711 #16	SLC25A26 (ENSOGAG00000002219) #17	ENSOGAG00000007944 #18	LRIG1 (ENSOGAG00000002220) #19	ENSOGAG00000006131 #20	ENSOGAG00000024724 #21	KBTBD8 (ENSOGAG00000024533) #22	ENSOGAG00000006190 #23	ENSOGAG00000028255 #24	TAFA4 (ENSOGAG00000012090) #25	EOGT (ENSOGAG00000012093) #26	TMF1 (ENSOGAG00000007764) #27	UBA3 (ENSOGAG00000007771) #28	ARL6IP5 (ENSOGAG00000007773) #29	LMOD3 (ENSOGAG00000002704) #30	FRMD4B (ENSOGAG00000002705) #31	MITF (ENSOGAG00000000043) #32	MDFIC2 (ENSOGAG00000030030) #33	FOXP1 (ENSOGAG00000008367) #34	ENSOGAG00000027936 #35	EIF4E3 (ENSOGAG00000014590) #36	GPR27 (ENSOGAG00000032511) #37
Lemuriformes	ANCESTRAL SPECIES	17	ENSGT00940000155048	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607
Mouse lemur	MODERN SPECIES	134									SLC10A6 (ENSMICG00000016697)	ENSMICG00000046876	ENSMICG00000028855	ENSMICG00000027340	SLC25A26 (ENSMICG00000012813) #17	LRIG1 (ENSMICG00000012819) #19	ENSMICG00000037068	KBTBD8 (ENSMICG00000014192) #22
Lemuriformes_a	ANCESTRAL SPECIES	6	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT00950000183306	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607
Coquerels sifaka	MODERN SPECIES	489																ENSPCOG00000013551 #22	ENSPCOG00000013992	ENSPCOG00000007092 #23	TAFA1 (ENSPCOG00000014547)	TAFA4 (ENSPCOG00000014705) #25
Greater bamboo lemur	MODERN SPECIES	292			SYNPR (ENSPSMG00000004928)	SNTN (ENSPSMG00000004810)	C3orf49 (ENSPSMG00000004797) #8	THOC7 (ENSPSMG00000004782) #9	ATXN7 (ENSPSMG00000004746) #10	PSMD6 (ENSPSMG00000004695) #11	ENSPSMG00000004682	ENSPSMG00000004681	PRICKLE2 (ENSPSMG00000004661) #13	ADAMTS9 (ENSPSMG00000004610) #14	MAGI1 (ENSPSMG00000004290) #15	SLC25A26 (ENSPSMG00000003855) #17	LRIG1 (ENSPSMG00000003802) #19	KBTBD8 (ENSPSMG00000003777) #22	SUCLG2 (ENSPSMG00000003680) #23	TAFA1 (ENSPSMG00000003616)
Haplorrhini	ANCESTRAL SPECIES	5	ENSGT00940000155048	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00910000146944
Simiiformes	ANCESTRAL SPECIES	1	ENSGT00940000155048	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00910000146944
Catarrhini	ANCESTRAL SPECIES	2	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00910000146882	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT01040000240967	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00530000063786.a.m	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36
Hominoidea	ANCESTRAL SPECIES	2	ENSGT00590000083094.a.a	ENSGT00860000135738	ENSGT00950000183306	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00910000146882	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT01040000240967	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00530000063786.a.m	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36
Hominidae	ANCESTRAL SPECIES	2	ENSGT00590000083094.a.a	ENSGT00860000135738	ENSGT00950000183306	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00910000146882	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT01040000240967	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00530000063786.a.m	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	2	ENSGT00860000135738	ENSGT00390000007888.d	ENSGT00950000183306	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00910000146882	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT01040000240967	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00530000063786.a.m	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36
Homo/Pan group	ANCESTRAL SPECIES	3	ENSGT00860000135738	ENSGT00390000007888.d	ENSGT00950000183306	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00910000146882	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT01040000240967	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00530000063786.a.m	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36
Pan	ANCESTRAL SPECIES	2	ENSGT00590000083094.a.a	ENSGT00860000135738	ENSGT00390000007888.d	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00910000146882	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT01040000240967	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00530000063786.a.m	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36
Bonobo	MODERN SPECIES	16	ENSPPAG00000037095	ENSPPAG00000033241	ENSPPAG00000034871	SYNPR (ENSPPAG00000037002)	ENSPPAG00000014773	C3orf49 (ENSPPAG00000044092) #8	THOC7 (ENSPPAG00000044086) #9	ATXN7 (ENSPPAG00000038542) #10	PSMD6 (ENSPPAG00000008985) #11	PRICKLE2 (ENSPPAG00000036788) #13	ADAMTS9 (ENSPPAG00000027506) #14	ENSPPAG00000023910 #15	ENSPPAG00000032911	SLC25A26 (ENSPPAG00000030070) #17	LRIG1 (ENSPPAG00000041400) #19	KBTBD8 (ENSPPAG00000041680) #22	SUCLG2 (ENSPPAG00000035499) #23	ENSPPAG00000033694	ENSPPAG00000032744	TAFA4 (ENSPPAG00000038870) #25	EOGT (ENSPPAG00000040173) #26	TMF1 (ENSPPAG00000042538) #27	UBA3 (ENSPPAG00000031816) #28	ARL6IP5 (ENSPPAG00000033634) #29	LMOD3 (ENSPPAG00000033796) #30	FRMD4B (ENSPPAG00000021170) #31	MITF (ENSPPAG00000041237) #32	ENSPPAG00000030278	MDFIC2 (ENSPPAG00000036914) #33	FOXP1 (ENSPPAG00000039148) #34	ENSPPAG00000035020 #36
Chimpanzee	MODERN SPECIES	16	CADPS (ENSPTRG00000015072)	ENSPTRG00000052322	ENSPTRG00000051485	SYNPR (ENSPTRG00000015073)	SNTN (ENSPTRG00000015074)	C3H3orf49 (ENSPTRG00000015075) #8	THOC7 (ENSPTRG00000015076) #9	ATXN7 (ENSPTRG00000015077) #10	PSMD6 (ENSPTRG00000015078) #11	PRICKLE2 (ENSPTRG00000015081) #13	ADAMTS9 (ENSPTRG00000015082) #14	MAGI1 (ENSPTRG00000015083) #15	ENSPTRG00000046672	SLC25A26 (ENSPTRG00000015084) #17	LRIG1 (ENSPTRG00000015085) #19	KBTBD8 (ENSPTRG00000015086) #22	SUCLG2 (ENSPTRG00000046048) #23	TAFA1 (ENSPTRG00000015088)	TAFA4 (ENSPTRG00000015091) #25	EOGT (ENSPTRG00000015092) #26	TMF1 (ENSPTRG00000015094) #27	UBA3 (ENSPTRG00000015095) #28	ENSPTRG00000048155	ARL6IP5 (ENSPTRG00000015096) #29	LMOD3 (ENSPTRG00000015097) #30	FRMD4B (ENSPTRG00000015098) #31	MITF (ENSPTRG00000015100) #32	ENSPTRG00000044227	MDFIC2 (ENSPTRG00000044422) #33	FOXP1 (ENSPTRG00000015101) #34	EIF4E3 (ENSPTRG00000015102) #36
Human	MODERN SPECIES	15	PTPRG (ENSG00000144724)	C3orf14 (ENSG00000114405)	FEZF2 (ENSG00000153266)	CADPS (ENSG00000163618)	SYNPR (ENSG00000163630)	SNTN (ENSG00000188817)	C3orf49 (ENSG00000163632) #8	THOC7 (ENSG00000163634) #9	ATXN7 (ENSG00000163635) #10	PSMD6 (ENSG00000163636) #11	PRICKLE2 (ENSG00000163637) #13	ADAMTS9 (ENSG00000163638) #14	MAGI1 (ENSG00000151276) #15	SLC25A26 (ENSG00000144741) #17	LRIG1 (ENSG00000144749) #19	KBTBD8 (ENSG00000163376) #22	SUCLG2 (ENSG00000172340) #23	TAFA1 (ENSG00000183662)	TAFA4 (ENSG00000163377) #25	EOGT (ENSG00000163378) #26	TMF1 (ENSG00000144747) #27	UBA3 (ENSG00000144744) #28	ARL6IP5 (ENSG00000144746) #29	LMOD3 (ENSG00000163380) #30	FRMD4B (ENSG00000114541) #31	MITF (ENSG00000187098) #32	MDFIC2 (ENSG00000242120) #33	FOXP1 (ENSG00000114861) #34	ENSG00000285708	EIF4E3 (ENSG00000163412) #36	GPR27 (ENSG00000170837) #37
Gorilla	MODERN SPECIES	16	ENSGGOG00000015194	ENSGGOG00000042564	ENSGGOG00000037389	SYNPR (ENSGGOG00000002513)	SNTN (ENSGGOG00000012870)	C3orf49 (ENSGGOG00000012760) #8	THOC7 (ENSGGOG00000024282) #9	ATXN7 (ENSGGOG00000012900) #10	PSMD6 (ENSGGOG00000004430) #11	PRICKLE2 (ENSGGOG00000006935) #13	ADAMTS9 (ENSGGOG00000015540) #14	MAGI1 (ENSGGOG00000004958) #15	ENSGGOG00000042398	ENSGGOG00000036595 #17	LRIG1 (ENSGGOG00000014317) #19	KBTBD8 (ENSGGOG00000023751) #22	SUCLG2 (ENSGGOG00000027438) #23	ENSGGOG00000042425	TAFA1 (ENSGGOG00000011732)	ENSGGOG00000012362	TAFA4 (ENSGGOG00000010868) #25	EOGT (ENSGGOG00000034885) #26	TMF1 (ENSGGOG00000006754) #27	UBA3 (ENSGGOG00000003959) #28	ENSGGOG00000036802	ARL6IP5 (ENSGGOG00000000983) #29	LMOD3 (ENSGGOG00000015200) #30	FRMD4B (ENSGGOG00000002181) #31	MITF (ENSGGOG00000024338) #32	ENSGGOG00000026201	MDFIC2 (ENSGGOG00000043971) #33
Orangutan	MODERN SPECIES	16	PTPRG (ENSPPYG00000013752)	C3orf14 (ENSPPYG00000013751)	FEZF2 (ENSPPYG00000013750)	CADPS (ENSPPYG00000013749)	SYNPR (ENSPPYG00000013748)	SNTN (ENSPPYG00000013747)	C3orf49 (ENSPPYG00000013745) #8	THOC7 (ENSPPYG00000013746) #9	ATXN7 (ENSPPYG00000013744) #10	PSMD6 (ENSPPYG00000013743) #11	PRICKLE2 (ENSPPYG00000013741) #13	ADAMTS9 (ENSPPYG00000013740) #14	MAGI1 (ENSPPYG00000013739) #15	SLC25A26 (ENSPPYG00000013738) #17	LRIG1 (ENSPPYG00000013737) #19	KBTBD8 (ENSPPYG00000038565) #22	SUCLG2 (ENSPPYG00000013735) #23	TAFA1 (ENSPPYG00000013733)	ENSPPYG00000035430 #25	EOGT (ENSPPYG00000013731) #26	TMF1 (ENSPPYG00000013730) #27	ENSPPYG00000038623	UBA3 (ENSPPYG00000013729) #28	ARL6IP5 (ENSPPYG00000013728) #29	LMOD3 (ENSPPYG00000013727) #30	FRMD4B (ENSPPYG00000013726) #31	MITF (ENSPPYG00000013725) #32	MDFIC2 (ENSPPYG00000041220) #33	FOXP1 (ENSPPYG00000013722) #34	EIF4E3 (ENSPPYG00000033784) #36	GPR27 (ENSPPYG00000013720) #37
Gibbon	MODERN SPECIES	13	ENSNLEG00000011669	ENSNLEG00000027146	SYNPR (ENSNLEG00000011741)	ENSNLEG00000011755	C3orf49 (ENSNLEG00000011759) #8	THOC7 (ENSNLEG00000011760) #9	ATXN7 (ENSNLEG00000011772) #10	PSMD6 (ENSNLEG00000011805) #11	PRICKLE2 (ENSNLEG00000011847) #13	ENSNLEG00000032900	ADAMTS9 (ENSNLEG00000011854) #14	MAGI1 (ENSNLEG00000011916) #15	ENSNLEG00000030874	ENSNLEG00000007539 #17	LRIG1 (ENSNLEG00000007544) #19	KBTBD8 (ENSNLEG00000007551) #22	ENSNLEG00000007553 #23	ENSNLEG00000018553	ENSNLEG00000001961	ENSNLEG00000001966	TAFA4 (ENSNLEG00000001971) #25	EOGT (ENSNLEG00000001976) #26	TMF1 (ENSNLEG00000002036) #27	ENSNLEG00000031694	UBA3 (ENSNLEG00000002198) #28	ARL6IP5 (ENSNLEG00000029362) #29	LMOD3 (ENSNLEG00000002236) #30	FRMD4B (ENSNLEG00000002248) #31	MITF (ENSNLEG00000002357) #32	ENSNLEG00000029106	ENSNLEG00000002490
Cercopithecidae	ANCESTRAL SPECIES	1	ENSGT00910000148224	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00910000146882	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000163880	ENSGT00390000000306.g	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a.c #29	ENSGT01040000240967	ENSGT00390000008631.a.d.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00530000063786.a.m
Cercopithecinae	ANCESTRAL SPECIES	5	ENSGT00910000148224	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00910000146882	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000163880	ENSGT00390000000306.g	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT01040000240967	ENSGT00390000008631.a.d.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00530000063786.a.m	ENSGT00730000111641 #33
Cercopithecinae_a	ANCESTRAL SPECIES	5	ENSGT00910000148224	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00910000146882	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00390000000306.g	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT01040000240967	ENSGT00390000008631.a.d.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00530000063786.a.m	ENSGT00730000111641 #33	ENSGT00940000159892 #34
Macaca	ANCESTRAL SPECIES	5	ENSGT00910000148224	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00910000146882	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT01040000240967	ENSGT00390000008631.a.d.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865.a.a #36	ENSGT00890000139436.A.a #37
Macaca_a	ANCESTRAL SPECIES	5	ENSGT00940000155048	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT01040000240967	ENSGT00390000008631.a.d.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865.a.a #36	ENSGT00890000139436.A.a #37
Crab-eating macaque	MODERN SPECIES	11	FEZF2 (ENSMFAG00000039881)	CADPS (ENSMFAG00000037884)	SYNPR (ENSMFAG00000039535)	SNTN (ENSMFAG00000041510)	C3orf49 (ENSMFAG00000014502) #8	THOC7 (ENSMFAG00000032653) #9	ATXN7 (ENSMFAG00000037665) #10	ENSMFAG00000055512	PSMD6 (ENSMFAG00000040782) #11	PRICKLE2 (ENSMFAG00000002702) #13	ADAMTS9 (ENSMFAG00000036382) #14	MAGI1 (ENSMFAG00000032287) #15	ENSMFAG00000047524	SLC25A26 (ENSMFAG00000000714) #17	LRIG1 (ENSMFAG00000033439) #19	KBTBD8 (ENSMFAG00000003507) #22	SUCLG2 (ENSMFAG00000041500) #23	TAFA1 (ENSMFAG00000034201)	TAFA4 (ENSMFAG00000020992) #25	EOGT (ENSMFAG00000041998) #26	TMF1 (ENSMFAG00000037002) #27	UBA3 (ENSMFAG00000036648) #28	ENSMFAG00000051018	ARL6IP5 (ENSMFAG00000001584) #29	LMOD3 (ENSMFAG00000044328) #30	FRMD4B (ENSMFAG00000040109) #31	MITF (ENSMFAG00000038478) #32	MDFIC2 (ENSMFAG00000042217) #33	FOXP1 (ENSMFAG00000033964) #34	EIF4E3 (ENSMFAG00000039909) #36	GPR27 (ENSMFAG00000053255) #37
Rhesus	MODERN SPECIES	11	FEZF2 (ENSMMUG00000021592)	ENSMMUG00000031902	SYNPR (ENSMMUG00000023718)	SNTN (ENSMMUG00000062888)	C2H3orf49 (ENSMMUG00000012780) #8	THOC7 (ENSMMUG00000012783) #9	ATXN7 (ENSMMUG00000001508) #10	PSMD6 (ENSMMUG00000001509) #11	PRICKLE2 (ENSMMUG00000001513) #13	ADAMTS9 (ENSMMUG00000000265) #14	MAGI1 (ENSMMUG00000017510) #15	ENSMMUG00000057539	SLC25A26 (ENSMMUG00000001529) #17	LRIG1 (ENSMMUG00000001531) #19	ENSMMUG00000054412	KBTBD8 (ENSMMUG00000049226) #22	SUCLG2 (ENSMMUG00000009693) #23	TAFA1 (ENSMMUG00000013847)	TAFA4 (ENSMMUG00000050069) #25	EOGT (ENSMMUG00000011090) #26	TMF1 (ENSMMUG00000008616) #27	UBA3 (ENSMMUG00000008620) #28	ARL6IP5 (ENSMMUG00000058373) #29	LMOD3 (ENSMMUG00000008628) #30	FRMD4B (ENSMMUG00000000387) #31	MITF (ENSMMUG00000002100) #32	MDFIC2 (ENSMMUG00000057543) #33	FOXP1 (ENSMMUG00000002889) #34	EIF4E3 (ENSMMUG00000007780) #36	GPR27 (ENSMMUG00000040565) #37	PROK2 (ENSMMUG00000018494)
Pig-tailed macaque	MODERN SPECIES	106	C3orf14 (ENSMNEG00000039569)	ENSMNEG00000027707	CADPS (ENSMNEG00000043979)	SYNPR (ENSMNEG00000037219)	SNTN (ENSMNEG00000032350)	C3orf49 (ENSMNEG00000002764) #8	THOC7 (ENSMNEG00000035012) #9	ATXN7 (ENSMNEG00000037292) #10	PSMD6 (ENSMNEG00000028262) #11	PRICKLE2 (ENSMNEG00000017820) #13	ADAMTS9 (ENSMNEG00000041827) #14	MAGI1 (ENSMNEG00000031705) #15	ENSMNEG00000032876	SLC25A26 (ENSMNEG00000036231) #17	LRIG1 (ENSMNEG00000036965) #19	KBTBD8 (ENSMNEG00000042365) #22	SUCLG2 (ENSMNEG00000041935) #23	ENSMNEG00000043216	TAFA1 (ENSMNEG00000037377)	TAFA4 (ENSMNEG00000020663) #25	EOGT (ENSMNEG00000042181) #26	TMF1 (ENSMNEG00000033820) #27	UBA3 (ENSMNEG00000038119) #28	ENSMNEG00000041449	ARL6IP5 (ENSMNEG00000044211) #29	LMOD3 (ENSMNEG00000029599) #30	FRMD4B (ENSMNEG00000041887) #31
Cercopithecinae_b	ANCESTRAL SPECIES		ENSGT00390000005214	ENSGT00940000160100	ENSGT00950000183306	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00910000146882	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00390000000306.g	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT01040000240967	ENSGT00390000008631.a.d.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00530000063786.a.m	ENSGT00730000111641 #33	ENSGT00940000159892 #34
Olive baboon	MODERN SPECIES	11	FEZF2 (ENSPANG00000015063)	ENSPANG00000042442	ENSPANG00000015659	SYNPR (ENSPANG00000021872)	ENSPANG00000041214	C3orf49 (ENSPANG00000011418) #8	THOC7 (ENSPANG00000009531) #9	ATXN7 (ENSPANG00000008978) #10	PSMD6 (ENSPANG00000014295) #11	PRICKLE2 (ENSPANG00000022790) #13	ADAMTS9 (ENSPANG00000006402) #14	MAGI1 (ENSPANG00000024536) #15	SLC25A26 (ENSPANG00000015066) #17	LRIG1 (ENSPANG00000014202) #19	ENSPANG00000045992	KBTBD8 (ENSPANG00000024439) #22	ENSPANG00000040517	ENSPANG00000048748	SUCLG2 (ENSPANG00000019945) #23	TAFA1 (ENSPANG00000021491)	TAFA4 (ENSPANG00000043583) #25	ENSPANG00000022502	EOGT (ENSPANG00000012769) #26	TMF1 (ENSPANG00000014204) #27	ENSPANG00000029557	UBA3 (ENSPANG00000021492) #28	ARL6IP5 (ENSPANG00000006554) #29	LMOD3 (ENSPANG00000011422) #30	FRMD4B (ENSPANG00000022151) #31	ENSPANG00000030680	MITF (ENSPANG00000011565) #32
Cercopithecinae_d	ANCESTRAL SPECIES	12	ENSGT00390000005214	ENSGT00940000160100	ENSGT00950000183306	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00910000146882	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00390000000306.g	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT01040000240967	ENSGT00390000008631.a.d.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00530000063786.a.m	ENSGT00730000111641 #33	ENSGT00940000159892 #34
Sooty mangabey	MODERN SPECIES	650	FEZF2 (ENSCATG00000038119)	ENSCATG00000007026	ENSCATG00000043197	SYNPR (ENSCATG00000000279)	SNTN (ENSCATG00000038530)	C3orf49 (ENSCATG00000041531) #8	THOC7 (ENSCATG00000038732) #9	ATXN7 (ENSCATG00000044553) #10	PSMD6 (ENSCATG00000030183) #11	PRICKLE2 (ENSCATG00000030722) #13	ADAMTS9 (ENSCATG00000036951) #14	MAGI1 (ENSCATG00000029406) #15	ENSCATG00000043667	SLC25A26 (ENSCATG00000041774) #17	LRIG1 (ENSCATG00000034849) #19	KBTBD8 (ENSCATG00000044556) #22	ENSCATG00000015873 #23	ENSCATG00000041909	TAFA1 (ENSCATG00000043084)	TAFA4 (ENSCATG00000041495) #25	ENSCATG00000041655	EOGT (ENSCATG00000042477) #26	TMF1 (ENSCATG00000042507) #27	UBA3 (ENSCATG00000043878) #28	ENSCATG00000029114	ARL6IP5 (ENSCATG00000029543) #29	LMOD3 (ENSCATG00000014427) #30	FRMD4B (ENSCATG00000041747) #31	MITF (ENSCATG00000036190) #32	ENSCATG00000035930	MDFIC2 (ENSCATG00000030313) #33
Drill	MODERN SPECIES	785				SYNPR (ENSMLEG00000006476)	SNTN (ENSMLEG00000038491)	C3orf49 (ENSMLEG00000003720) #8	THOC7 (ENSMLEG00000041263) #9	ATXN7 (ENSMLEG00000037048) #10	PSMD6 (ENSMLEG00000044002) #11	PRICKLE2 (ENSMLEG00000037783) #13	ADAMTS9 (ENSMLEG00000038303) #14	MAGI1 (ENSMLEG00000035281) #15	ENSMLEG00000035289	SLC25A26 (ENSMLEG00000038263) #17	LRIG1 (ENSMLEG00000026230) #19	KBTBD8 (ENSMLEG00000041169) #22	ENSMLEG00000029579 #23	ENSMLEG00000040678
Vervet Monkey	MODERN SPECIES	14	PTPRG (ENSCSAG00000012056)	C3orf14 (ENSCSAG00000012039)	FEZF2 (ENSCSAG00000012034)	ENSCSAG00000012025	SYNPR (ENSCSAG00000012010)	C3orf49 (ENSCSAG00000011999) #8	THOC7 (ENSCSAG00000011986) #9	ATXN7 (ENSCSAG00000011977) #10	PSMD6 (ENSCSAG00000011965) #11	PRICKLE2 (ENSCSAG00000011960) #13	ADAMTS9 (ENSCSAG00000011951) #14	MAGI1 (ENSCSAG00000011889) #15	ENSCSAG00000011762	SLC25A26 (ENSCSAG00000011735) #17	LRIG1 (ENSCSAG00000011724) #19	KBTBD8 (ENSCSAG00000011713) #22	SUCLG2 (ENSCSAG00000011704) #23	ENSCSAG00000011694	TAFA4 (ENSCSAG00000011689) #25	EOGT (ENSCSAG00000011678) #26	TMF1 (ENSCSAG00000011667) #27	UBA3 (ENSCSAG00000011650) #28	ARL6IP5 (ENSCSAG00000011634) #29	LMOD3 (ENSCSAG00000011626) #30	FRMD4B (ENSCSAG00000011618) #31	ENSCSAG00000018800	ENSCSAG00000011601	MITF (ENSCSAG00000011595) #32	ENSCSAG00000018802	FOXP1 (ENSCSAG00000011581) #34	ENSCSAG00000011556 #36
Rhinopithecus	ANCESTRAL SPECIES	425																ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00390000000306.g	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a.d.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000154326.a.b.b.m.a.c
Golden snub-nosed monkey	MODERN SPECIES	1017																KBTBD8 (ENSRROG00000039491) #22	ENSRROG00000035738 #23
Black snub-nosed monkey	MODERN SPECIES	1987																KBTBD8 (ENSRBIG00000039346) #22	ENSRBIG00000042558 #23	ENSRBIG00000037847	TAFA1 (ENSRBIG00000033651)	TAFA4 (ENSRBIG00000039642) #25	EOGT (ENSRBIG00000041912) #26	TMF1 (ENSRBIG00000044345) #27	UBA3 (ENSRBIG00000044270) #28	ARL6IP5 (ENSRBIG00000038228) #29	LMOD3 (ENSRBIG00000015450) #30	FRMD4B (ENSRBIG00000032228) #31	ENSRBIG00000038037
Platyrrhini	ANCESTRAL SPECIES	18	ENSGT00910000147889	ENSGT00950000183306	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000153783.b.b.c.a.a.b	ENSGT00910000146882	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.c #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
Cebidae	ANCESTRAL SPECIES	14	ENSGT00910000147889	ENSGT00950000183306	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000153783.b.b.c.a.a.b	ENSGT00910000146882	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.c #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
Cebidae_a	ANCESTRAL SPECIES	24	ENSGT00910000147889	ENSGT00950000183306	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000153783.b.b.c.a.a.b	ENSGT00910000146882	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.c #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
Bolivian squirrel monkey	MODERN SPECIES	168	CADPS (ENSSBOG00000000887)	ENSSBOG00000027535	ENSSBOG00000031871	SYNPR (ENSSBOG00000030877)	SNTN (ENSSBOG00000019708)	C3orf49 (ENSSBOG00000028558) #8	THOC7 (ENSSBOG00000021884) #9	ATXN7 (ENSSBOG00000008269) #10	PSMD6 (ENSSBOG00000003468) #11	PRICKLE2 (ENSSBOG00000026179) #13	ADAMTS9 (ENSSBOG00000029171) #14	MAGI1 (ENSSBOG00000027450) #15	ENSSBOG00000024545	SLC25A26 (ENSSBOG00000000219) #17	LRIG1 (ENSSBOG00000031804) #19	KBTBD8 (ENSSBOG00000028664) #22	SUCLG2 (ENSSBOG00000025601) #23
Capuchin	MODERN SPECIES	147														ENSCCAG00000023140 #17	LRIG1 (ENSCCAG00000033301) #19	KBTBD8 (ENSCCAG00000006761) #22	SUCLG2 (ENSCCAG00000028963) #23	TAFA1 (ENSCCAG00000026684)	TAFA4 (ENSCCAG00000024091) #25	EOGT (ENSCCAG00000025152) #26	ENSCCAG00000037451	TMF1 (ENSCCAG00000002333) #27	ENSCCAG00000003895	ENSCCAG00000023356 #28	ARL6IP5 (ENSCCAG00000022257) #29	LMOD3 (ENSCCAG00000027483) #30	FRMD4B (ENSCCAG00000033149) #31	ENSCCAG00000026482	MITF (ENSCCAG00000030554) #32	MDFIC2 (ENSCCAG00000000010) #33	FOXP1 (ENSCCAG00000032400) #34
Marmoset	MODERN SPECIES	6	ENSCJAG00000081411	ATXN7 (ENSCJAG00000019570) #10	PSMD6 (ENSCJAG00000019540) #11	ENSCJAG00000071158	PRICKLE2 (ENSCJAG00000019532) #13	ADAMTS9 (ENSCJAG00000019487) #14	ENSCJAG00000066923	MAGI1 (ENSCJAG00000019439) #15	ENSCJAG00000079349	ENSCJAG00000072067	SLC25A26 (ENSCJAG00000013660) #17	ENSCJAG00000052459	LRIG1 (ENSCJAG00000013635) #19	ENSCJAG00000070503	ENSCJAG00000073045	KBTBD8 (ENSCJAG00000044815) #22	ENSCJAG00000071204	SUCLG2 (ENSCJAG00000013610) #23	ENSCJAG00000013607	ENSCJAG00000051437	TAFA4 (ENSCJAG00000057637) #25	ENSCJAG00000077127	ENSCJAG00000083460	ENSCJAG00000080341	EOGT (ENSCJAG00000013564) #26	TMF1 (ENSCJAG00000013491) #27	UBA3 (ENSCJAG00000013395) #28	ARL6IP5 (ENSCJAG00000044302) #29	LMOD3 (ENSCJAG00000013357) #30	FRMD4B (ENSCJAG00000013312) #31	MITF (ENSCJAG00000013260) #32
Mas night monkey	MODERN SPECIES	1103	C7orf25 (ENSANAG00000029268)	GLI3 (ENSANAG00000033410)	INHBA (ENSANAG00000022627)	SUGCT (ENSANAG00000025338)	MPLKIP (ENSANAG00000035918)	CDK13 (ENSANAG00000019746)	RALA (ENSANAG00000030583)	ENSANAG00000022924	YAE1 (ENSANAG00000037569)	POU6F2 (ENSANAG00000032939)	VPS41 (ENSANAG00000027607)	ENSANAG00000001067	AMPH (ENSANAG00000023088)	SLC25A26 (ENSANAG00000034578) #17	LRIG1 (ENSANAG00000020533) #19	KBTBD8 (ENSANAG00000032012) #22	SUCLG2 (ENSANAG00000033664) #23	TAFA1 (ENSANAG00000028819)	TAFA4 (ENSANAG00000020763) #25	EOGT (ENSANAG00000030876) #26	TMF1 (ENSANAG00000037546) #27	ENSANAG00000035877 #28	ARL6IP5 (ENSANAG00000021456) #29	LMOD3 (ENSANAG00000020335) #30	FRMD4B (ENSANAG00000034952) #31	MITF (ENSANAG00000033269) #32	MDFIC2 (ENSANAG00000031584) #33	ENSANAG00000020794	ENSANAG00000017661	FOXP1 (ENSANAG00000028269) #34	EIF4E3 (ENSANAG00000031727) #36
Tarsier	MODERN SPECIES	7054												ENSTSYG00000027783	MAGI1 (ENSTSYG00000007911) #15	SLC25A26 (ENSTSYG00000032957) #17	LRIG1 (ENSTSYG00000011778) #19	KBTBD8 (ENSTSYG00000000350) #22	ENSTSYG00000002336
Euarchontoglires_A	ANCESTRAL SPECIES	2	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00940000164126 #7	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00650000094763 #35	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Tree shrew	MODERN SPECIES	3081																ENSTBEG00000010891 #22
Glires	ANCESTRAL SPECIES	2	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00940000164126 #7	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00650000094763 #35	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Lagomorpha	ANCESTRAL SPECIES	11	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00940000164126 #7	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00940000162026	ENSGT00390000013995.b.a
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	20	ENSOCUG00000009991	ENSOCUG00000029641 #7	C3orf49 (ENSOCUG00000015241) #8	ENSOCUG00000021860 #9	ATXN7 (ENSOCUG00000000803) #10	PSMD6 (ENSOCUG00000025313) #11	PRICKLE2 (ENSOCUG00000000810) #13	ENSOCUG00000039298	ADAMTS9 (ENSOCUG00000000109) #14	ENSOCUG00000024307	ENSOCUG00000032881	MAGI1 (ENSOCUG00000010042) #15	SLC25A26 (ENSOCUG00000007507) #17	LRIG1 (ENSOCUG00000007510) #19	ENSOCUG00000031394	ENSOCUG00000034604 #22	ENSOCUG00000026148 #22	SUCLG2 (ENSOCUG00000012376) #23	ENSOCUG00000034053	TAFA1 (ENSOCUG00000031560)	ENSOCUG00000024623	TAFA4 (ENSOCUG00000003703) #25	ENSOCUG00000038099	ENSOCUG00000031619	EOGT (ENSOCUG00000012022) #26	ENSOCUG00000016492	TMF1 (ENSOCUG00000008154) #27	UBA3 (ENSOCUG00000008169) #28	ARL6IP5 (ENSOCUG00000008184) #29	LMOD3 (ENSOCUG00000008188) #30	FRMD4B (ENSOCUG00000002887) #31
Rabbit	MODERN SPECIES	20	ENSOCUG00000029641 #7	C3orf49 (ENSOCUG00000015241) #8	ENSOCUG00000021860 #9	ATXN7 (ENSOCUG00000000803) #10	PSMD6 (ENSOCUG00000025313) #11	PRICKLE2 (ENSOCUG00000000810) #13	ENSOCUG00000039298	ADAMTS9 (ENSOCUG00000000109) #14	ENSOCUG00000024307	ENSOCUG00000032881	MAGI1 (ENSOCUG00000010042) #15	SLC25A26 (ENSOCUG00000007507) #17	LRIG1 (ENSOCUG00000007510) #19	ENSOCUG00000031394	ENSOCUG00000034604 #22	ENSOCUG00000026148 #22	SUCLG2 (ENSOCUG00000012376) #23	ENSOCUG00000034053	TAFA1 (ENSOCUG00000031560)	ENSOCUG00000024623	TAFA4 (ENSOCUG00000003703) #25	ENSOCUG00000038099	ENSOCUG00000031619	EOGT (ENSOCUG00000012022) #26	ENSOCUG00000016492	TMF1 (ENSOCUG00000008154) #27	UBA3 (ENSOCUG00000008169) #28	ARL6IP5 (ENSOCUG00000008184) #29	LMOD3 (ENSOCUG00000008188) #30	FRMD4B (ENSOCUG00000002887) #31	ENSOCUG00000026608
Pika	MODERN SPECIES	2752																ENSOPRG00000004721 #22
Rodentia	ANCESTRAL SPECIES	2	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00940000164126 #7	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00650000094763 #35	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Rodentia_A	ANCESTRAL SPECIES	27	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00940000164126 #7	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00650000094763 #35	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Sciuridae	ANCESTRAL SPECIES	41																ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT01020000230354.A.a #31	ENSGT00940000159731 #30	ENSGT00390000008631.a #29	ENSGT00550000074831 #28	ENSGT00390000010697 #27	ENSGT00940000156493 #26	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
Marmotini	ANCESTRAL SPECIES	49																ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT01020000230354.A.a #31	ENSGT00940000159731 #30	ENSGT00390000008631.a #29	ENSGT00550000074831 #28	ENSGT00390000010697 #27	ENSGT00940000156493 #26	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
Marmotini_b	ANCESTRAL SPECIES	188																ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT01020000230354.A.a #31	ENSGT00940000159731 #30	ENSGT00390000008631.a #29	ENSGT00550000074831 #28	ENSGT00390000010697 #27	ENSGT00940000156493 #26	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026	ENSGT00390000013995.b.a
Arctic ground squirrel	MODERN SPECIES	916																KBTBD8 (ENSUPAG00010023913) #22
Squirrel	MODERN SPECIES	203																KBTBD8 (ENSSTOG00000020443) #22	SUCLG2 (ENSSTOG00000020195) #23	TAFA1 (ENSSTOG00000014757)	FRMD4B (ENSSTOG00000028861) #31	LMOD3 (ENSSTOG00000026793) #30	ARL6IP5 (ENSSTOG00000025065) #29	UBA3 (ENSSTOG00000003215) #28	TMF1 (ENSSTOG00000028312) #27	EOGT (ENSSTOG00000003163) #26	MITF (ENSSTOG00000005880) #32	MDFIC2 (ENSSTOG00000021337) #33	FOXP1 (ENSSTOG00000025624) #34	EIF4E3 (ENSSTOG00000020469) #36	PROK2 (ENSSTOG00000000976)	RYBP (ENSSTOG00000000185)	SHQ1 (ENSSTOG00000010043)
Alpin marmot	MODERN SPECIES	40															ENSMMMG00000004766	KBTBD8 (ENSMMMG00000004770) #22	SUCLG2 (ENSMMMG00000004779) #23	TAFA1 (ENSMMMG00000004799)	ENSMMMG00000004803 #25	FRMD4B (ENSMMMG00000004812) #31	LMOD3 (ENSMMMG00000004950) #30	ARL6IP5 (ENSMMMG00000004969) #29	UBA3 (ENSMMMG00000004980) #28	TMF1 (ENSMMMG00000005057) #27	EOGT (ENSMMMG00000006008) #26	MITF (ENSMMMG00000006045) #32	MDFIC2 (ENSMMMG00000006133) #33	FOXP1 (ENSMMMG00000006149) #34	ENSMMMG00000006861 #36	PROK2 (ENSMMMG00000006869)	RYBP (ENSMMMG00000006873)
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	10	ENSSVLG00005014356	ENSSVLG00005014214	ENSSVLG00005014121	ENSSVLG00005014073	ENSSVLG00005014042	ENSSVLG00005013904	ENSSVLG00005013793	ENSSVLG00005013731	ENSSVLG00005013708	ENSSVLG00005013669	ENSSVLG00005013626	ENSSVLG00005013547	ENSSVLG00005013464	ENSSVLG00005013369	ENSSVLG00005013309	ENSSVLG00005013244 #22	SUCLG2 (ENSSVLG00005013123) #23	ENSSVLG00005013072	TAFA1 (ENSSVLG00005013002)	FRMD4B (ENSSVLG00005012609) #31	LMOD3 (ENSSVLG00005012544) #30	ARL6IP5 (ENSSVLG00005012505) #29	UBA3 (ENSSVLG00005012414) #28	TMF1 (ENSSVLG00005012312) #27	EOGT (ENSSVLG00005012215) #26	MITF (ENSSVLG00005011612) #32	MDFIC2 (ENSSVLG00005011514) #33	FOXP1 (ENSSVLG00005010914) #34	EIF4E3 (ENSSVLG00005010716) #36	GPR27 (ENSSVLG00005010691) #37	PROK2 (ENSSVLG00005010626)
Eurasian red squirrel	MODERN SPECIES	14	ENSSVLG00005005267	ENSSVLG00005005284	ENSSVLG00005005304	ENSSVLG00005005323	ENSSVLG00005005346	ENSSVLG00005005368	ENSSVLG00005005388	ENSSVLG00005005410	ENSSVLG00005005432	ENSSVLG00005005463	ENSSVLG00005005494	ENSSVLG00005005516	ENSSVLG00005005545	ENSSVLG00005005564	ENSSVLG00005005586	ENSSVLG00005005608 #22	ENSSVLG00005005701	ENSSVLG00005005744	ENSSVLG00005005775	ENSSVLG00005005805	ENSSVLG00005005832	DEFB134 (ENSSVLG00005005890)	DEFB135 (ENSSVLG00005005909)	DEFB136 (ENSSVLG00005005928)	CTSB (ENSSVLG00005005958)	FDFT1 (ENSSVLG00005006025)	NEIL2 (ENSSVLG00005006127)	GATA4 (ENSSVLG00005006178)	ENSSVLG00005006271	BLK (ENSSVLG00005006299)	FAM167A (ENSSVLG00005006418)
Hystricomorpha	ANCESTRAL SPECIES	34							ENSGT00940000161154	ENSGT00390000015136	ENSGT00940000162216	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.i #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00650000094763 #35	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Hystricomorpha_a	ANCESTRAL SPECIES	45	ENSGT00950000182994.B.a.b.x	ENSGT00530000063735.b	ENSGT00940000160326	ENSGT00950000182980.a.b.a.a.b	ENSGT00940000155849	ENSGT01030000234553.b.b.d.c.b.a.a.a	ENSGT00940000161154	ENSGT00390000015136	ENSGT00940000162216	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.i #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
Guinea pig	MODERN SPECIES	16	GDI2 (ENSCPOG00000013449)	TASOR2 (ENSCPOG00000013441)	ASB13 (ENSCPOG00000037175)	CALML3 (ENSCPOG00000014283)	NET1 (ENSCPOG00000014555)	Cavporv1r602 (ENSCPOG00000035841)	CHST13 (ENSCPOG00000015174)	UROC1 (ENSCPOG00000002151)	ZXDC (ENSCPOG00000002150)	CFAP100 (ENSCPOG00000002149)	KLF15 (ENSCPOG00000005315)	ALDH1L1 (ENSCPOG00000006449)	SLC41A3 (ENSCPOG00000007303)	SLC25A26 (ENSCPOG00000002272) #17	LRIG1 (ENSCPOG00000002275) #19	KBTBD8 (ENSCPOG00000012739) #22	SUCLG2 (ENSCPOG00000013421) #23	TAFA1 (ENSCPOG00000014183)	TAFA4 (ENSCPOG00000013292) #25	EOGT (ENSCPOG00000013299) #26	TMF1 (ENSCPOG00000013302) #27	UBA3 (ENSCPOG00000030763) #28	ARL6IP5 (ENSCPOG00000033968) #29	LMOD3 (ENSCPOG00000013314) #30	FRMD4B (ENSCPOG00000037444) #31	MITF (ENSCPOG00000014963) #32	MDFIC2 (ENSCPOG00000036240) #33	FOXP1 (ENSCPOG00000003726) #34	EIF4E3 (ENSCPOG00000000391) #36	PROK2 (ENSCPOG00000033908)	RYBP (ENSCPOG00000032177)
Hystricomorpha_b	ANCESTRAL SPECIES	42	ENSGT00950000182994.B.a.b.x	ENSGT00530000063735.b	ENSGT00940000160326	ENSGT00950000182980.a.b.a.a.b	ENSGT00940000155849	ENSGT01030000234553.b.b.d.c.b.a.a.a	ENSGT00940000161154	ENSGT00390000015136	ENSGT00940000162216	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.i #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
Degu	MODERN SPECIES	71	KCNJ3 (ENSODEG00000005298)	ENSODEG00000007573	ENSODEG00000005156	CHST13 (ENSODEG00000006099)	UROC1 (ENSODEG00000006472)	ENSODEG00000019268	ZXDC (ENSODEG00000006787)	CFAP100 (ENSODEG00000006308)	KLF15 (ENSODEG00000005067)	ENSODEG00000005644	ENSODEG00000006480	SLC41A3 (ENSODEG00000006800)	SLC25A26 (ENSODEG00000006331) #17	LRIG1 (ENSODEG00000005673) #19	ENSODEG00000005664	KBTBD8 (ENSODEG00000005749) #22	ENSODEG00000005325	ENSODEG00000005791 #23	ENSODEG00000006681	TAFA1 (ENSODEG00000006092)	ENSODEG00000019577	ENSODEG00000005339	ENSODEG00000019215	TAFA4 (ENSODEG00000005744) #25	EOGT (ENSODEG00000006871) #26	TMF1 (ENSODEG00000007699) #27	ENSODEG00000007097 #28	ARL6IP5 (ENSODEG00000006820) #29	ENSODEG00000007217	LMOD3 (ENSODEG00000005409) #30	FRMD4B (ENSODEG00000005588) #31
Long-tailed chinchilla	MODERN SPECIES	128	CALML3 (ENSCLAG00000006016)	NET1 (ENSCLAG00000003970)	ENSCLAG00000003596	ENSCLAG00000003147	ENSCLAG00000006235	ENSCLAG00000005993	CHST13 (ENSCLAG00000005485)	UROC1 (ENSCLAG00000003335)	ZXDC (ENSCLAG00000007278)	CFAP100 (ENSCLAG00000015844)	KLF15 (ENSCLAG00000010869)	ALDH1L1 (ENSCLAG00000005505)	SLC41A3 (ENSCLAG00000004678)	SLC25A26 (ENSCLAG00000003949) #17	LRIG1 (ENSCLAG00000003192) #19	KBTBD8 (ENSCLAG00000013659) #22	SUCLG2 (ENSCLAG00000011578) #23	TAFA1 (ENSCLAG00000011025)	TAFA4 (ENSCLAG00000011274) #25	EOGT (ENSCLAG00000004823) #26	TMF1 (ENSCLAG00000004298) #27	UBA3 (ENSCLAG00000003651) #28	ARL6IP5 (ENSCLAG00000003471) #29	LMOD3 (ENSCLAG00000006151) #30	FRMD4B (ENSCLAG00000003792) #31	ENSCLAG00000004383	MITF (ENSCLAG00000003365) #32	MDFIC2 (ENSCLAG00000003152) #33	FOXP1 (ENSCLAG00000004963) #34	EIF4E3 (ENSCLAG00000003818) #36	PROK2 (ENSCLAG00000003618)
Naked mole-rat female	MODERN SPECIES	28	ENSHGLG00000039503	ENSHGLG00000000442	ENSHGLG00000003280	UROC1 (ENSHGLG00000003769)	ZXDC (ENSHGLG00000004088)	CCDC37 (ENSHGLG00000005326)	KLF15 (ENSHGLG00000012862)	ENSHGLG00000048152	ENSHGLG00000007673	ENSHGLG00000008631	ENSHGLG00000010661 #17	ENSHGLG00000038172	ENSHGLG00000041732	ENSHGLG00000002916 #19	ENSHGLG00000011084	KBTBD8 (ENSHGLG00000011553) #22	ENSHGLG00000021116	SUCLG2 (ENSHGLG00000006925) #23	TAFA1 (ENSHGLG00000007920)	ENSHGLG00000009657	TAFA4 (ENSHGLG00000047561) #25	EOGT (ENSHGLG00000014748) #26	TMF1 (ENSHGLG00000013960) #27	UBA3 (ENSHGLG00000019309) #28	ARL6IP5 (ENSHGLG00000039284) #29	LMOD3 (ENSHGLG00000019110) #30	FRMD4B (ENSHGLG00000003001) #31	MITF (ENSHGLG00000002575) #32	MDFIC2 (ENSHGLG00000043866) #33	FOXP1 (ENSHGLG00000002984) #34	ENSHGLG00000040329 #35
Rodentia_B	ANCESTRAL SPECIES	26	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00940000164126 #7	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
Kangaroo rat	MODERN SPECIES	331	ENSDORG00000007693	ENSDORG00000007695	Fezf2 (ENSDORG00000000030)	Cadps (ENSDORG00000006824)	Synpr (ENSDORG00000001872)	Sntn (ENSDORG00000001877)	Cdhr18 (ENSDORG00000027325) #7	ENSDORG00000028787 #9	Atxn7 (ENSDORG00000007600) #10	Psmd6 (ENSDORG00000007608) #11	Prickle2 (ENSDORG00000005850) #13	Adamts9 (ENSDORG00000001254) #14	Magi1 (ENSDORG00000012586) #15	Slc25a26 (ENSDORG00000003507) #17	Lrig1 (ENSDORG00000003508) #19	Kbtbd8 (ENSDORG00000000438) #22	Suclg2 (ENSDORG00000016563) #23	Tafa1 (ENSDORG00000008222)	Tafa4 (ENSDORG00000028398) #25	Eogt (ENSDORG00000000514) #26	Tmf1 (ENSDORG00000000515) #27	Uba3 (ENSDORG00000000516) #28	Arl6ip5 (ENSDORG00000029346) #29	Lmod3 (ENSDORG00000000518) #30	Frmd4b (ENSDORG00000002184) #31	Mitf (ENSDORG00000003336) #32	Mdfic2 (ENSDORG00000029192) #33	Foxp1 (ENSDORG00000009604) #34	Eif4e3 (ENSDORG00000006531) #36	Prok2 (ENSDORG00000006150)	Rybp (ENSDORG00000015021)
Myomorpha	ANCESTRAL SPECIES	36											ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
Lesser Egyptian jerboa	MODERN SPECIES	166			Pdhb (ENSJJAG00000015482)	Pxk (ENSJJAG00000016079)	ENSJJAG00000017703	Abhd6 (ENSJJAG00000018269)	Dnase1l3 (ENSJJAG00000018481)	ENSJJAG00000018689	Flnb (ENSJJAG00000019304)	Prickle2 (ENSJJAG00000004314) #13	Adamts9 (ENSJJAG00000010155) #14	ENSJJAG00000011743	Magi1 (ENSJJAG00000013586) #15	Slc25a26 (ENSJJAG00000019520) #17	Lrig1 (ENSJJAG00000021266) #19	Kbtbd8 (ENSJJAG00000022687) #22	Suclg2 (ENSJJAG00000023096) #23	Tafa1 (ENSJJAG00000023297)	Tafa4 (ENSJJAG00000023530) #25	Eogt (ENSJJAG00000020125) #26	Tmf1 (ENSJJAG00000021404) #27	ENSJJAG00000000648	Uba3 (ENSJJAG00000004056) #28	ENSJJAG00000023684 #29	Lmod3 (ENSJJAG00000023783) #30	Kctd6 (ENSJJAG00000023801)	Acox2 (ENSJJAG00000024029)	Fam107a (ENSJJAG00000000596)	Fam3d (ENSJJAG00000001255)	Cfap20dc (ENSJJAG00000004346)	ENSJJAG00000008056
Muroidea	ANCESTRAL SPECIES	37											ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
Upper Galilee mountains blind mole rat	MODERN SPECIES	545	ENSNGAG00000000579	Fen1 (ENSNGAG00000000449)	Fads1 (ENSNGAG00000003043)	Fads2 (ENSNGAG00000014321)	Fads3 (ENSNGAG00000015661)	ENSNGAG00000003987	ENSNGAG00000022803	ENSNGAG00000014932	Prickle2 (ENSNGAG00000020977) #13	Adamts9 (ENSNGAG00000023263) #14	ENSNGAG00000024077	Magi1 (ENSNGAG00000015704) #15	Slc25a26 (ENSNGAG00000005590) #17	Lrig1 (ENSNGAG00000012917) #19	ENSNGAG00000017225 ##12	Kbtbd8 (ENSNGAG00000023811) #22	Suclg2 (ENSNGAG00000014569) #23	Tafa1 (ENSNGAG00000017655)	Tafa4 (ENSNGAG00000020616) #25	Eogt (ENSNGAG00000015400) #26	Tmf1 (ENSNGAG00000022497) #27	Uba3 (ENSNGAG00000023328) #28	Arl6ip5 (ENSNGAG00000011599) #29	Lmod3 (ENSNGAG00000012605) #30	Frmd4b (ENSNGAG00000014412) #31	Mitf (ENSNGAG00000014658) #32	Mdfic2 (ENSNGAG00000003023) #33
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00390000013951	ENSGT00940000154583	ENSGT00940000155615	ENSGT00440000033958	ENSGT00940000153655.B	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00440000035348.l	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Murinae	ANCESTRAL SPECIES	4	ENSGT00390000013951	ENSGT00940000154583	ENSGT00940000155615	ENSGT00440000033958	ENSGT00940000153655.B	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00440000035348.l	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Mus	ANCESTRAL SPECIES	12	ENSGT00390000013951	ENSGT00940000154583	ENSGT00940000155615	ENSGT00440000033958	ENSGT00940000153655.B	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00440000035348.l	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Mus_A	ANCESTRAL SPECIES	7	ENSGT00390000013951	ENSGT00940000154583	ENSGT00940000155615	ENSGT00440000033958.c.a	ENSGT00940000153655.B	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00440000035348.l	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a.e #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Mus_B	ANCESTRAL SPECIES	15	ENSGT00390000013951	ENSGT00940000154583	ENSGT00940000155615	ENSGT00440000033958.c.a	ENSGT00940000153655.B	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00440000035348.l	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a.e #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Mus_C	ANCESTRAL SPECIES	18	ENSGT00940000155615	ENSGT00440000033958.c.a	ENSGT00940000153655.B	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00860000136292	ENSGT00860000136051	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00440000035348.l	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a.e #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Steppe mouse	MODERN SPECIES	2608													ENSMSIG00000026528 #17	Lrig1 (ENSMSIG00000026544) #19	ENSMSIG00000026678	Kbtbd8 (ENSMSIG00000026698) #22
spretus	MODERN SPECIES	15	Grip2 (MGP_SPRETEiJ_G0029683)	Ccdc174 (MGP_SPRETEiJ_G0029684)	4930590J08Rik (MGP_SPRETEiJ_G0029685)	Fgd5 (MGP_SPRETEiJ_G0029686)	Nr2c2 (MGP_SPRETEiJ_G0029687)	Mrps25 (MGP_SPRETEiJ_G0029688)	Rbsn (MGP_SPRETEiJ_G0029689)	Trh (MGP_SPRETEiJ_G0029690)	Prickle2 (MGP_SPRETEiJ_G0029691) #13	Adamts9 (MGP_SPRETEiJ_G0029692) #14	MGP_SPRETEiJ_G0029693	MGP_SPRETEiJ_G0029694	Magi1 (MGP_SPRETEiJ_G0029695) #15	Slc25a26 (MGP_SPRETEiJ_G0029696) #17	Lrig1 (MGP_SPRETEiJ_G0029697) #19	Kbtbd8 (MGP_SPRETEiJ_G0029698) #22	Suclg2 (MGP_SPRETEiJ_G0029699) #23	Tafa1 (MGP_SPRETEiJ_G0029700)	Nup50l (MGP_SPRETEiJ_G0029701)	Tafa4 (MGP_SPRETEiJ_G0029702) #25	Eogt (MGP_SPRETEiJ_G0029703) #26	Tmf1 (MGP_SPRETEiJ_G0029704) #27	Uba3 (MGP_SPRETEiJ_G0029705) #28	Arl6ip5 (MGP_SPRETEiJ_G0029706) #29	Lmod3 (MGP_SPRETEiJ_G0029707) #30	Frmd4b (MGP_SPRETEiJ_G0029708) #31	Mitf (MGP_SPRETEiJ_G0029709) #32	Mdfic2 (MGP_SPRETEiJ_G0029710) #33	Foxp1 (MGP_SPRETEiJ_G0029711) #34	MGP_SPRETEiJ_G0029712	Eif4e3 (MGP_SPRETEiJ_G0029713) #36
Mouse	MODERN SPECIES	15	Lsm3 (ENSMUSG00000034192)	Slc6a6 (ENSMUSG00000030096)	Grip2 (ENSMUSG00000030098)	Ccdc174 (ENSMUSG00000034083)	4930590J08Rik (ENSMUSG00000034063)	Fgd5 (ENSMUSG00000034037)	Nr2c2 (ENSMUSG00000005893)	Mrps25 (ENSMUSG00000014551)	Rbsn (ENSMUSG00000014550)	Trh (ENSMUSG00000005892)	Prickle2 (ENSMUSG00000030020) #13	Adamts9 (ENSMUSG00000030022) #14	Magi1 (ENSMUSG00000045095) #15	Slc25a26 (ENSMUSG00000045100) #17	Lrig1 (ENSMUSG00000030029) #19	Kbtbd8 (ENSMUSG00000030031) #22	Suclg2 (ENSMUSG00000061838) #23	Tafa1 (ENSMUSG00000059187)	Nup50l (ENSMUSG00000072878)	Tafa4 (ENSMUSG00000046500) #25	Eogt (ENSMUSG00000035245) #26	Tmf1 (ENSMUSG00000030059) #27	Uba3 (ENSMUSG00000030061) #28	Arl6ip5 (ENSMUSG00000035199) #29	Lmod3 (ENSMUSG00000044086) #30	Frmd4b (ENSMUSG00000030064) #31	Mitf (ENSMUSG00000035158) #32	Mdfic2 (ENSMUSG00000090667) #33	Foxp1 (ENSMUSG00000030067) #34	Eif4e3 (ENSMUSG00000093661) #36	Gpr27 (ENSMUSG00000072875) #37
Ryukyu mouse	MODERN SPECIES	15	Slc6a6 (MGP_CAROLIEiJ_G0028656)	MGP_CAROLIEiJ_G0028657	MGP_CAROLIEiJ_G0028658	4930590J08Rik (MGP_CAROLIEiJ_G0028659)	Fgd5 (MGP_CAROLIEiJ_G0028660)	Nr2c2 (MGP_CAROLIEiJ_G0028661)	Mrps25 (MGP_CAROLIEiJ_G0028662)	Rbsn (MGP_CAROLIEiJ_G0028663)	Trh (MGP_CAROLIEiJ_G0028664)	Prickle2 (MGP_CAROLIEiJ_G0028665) #13	Adamts9 (MGP_CAROLIEiJ_G0028666) #14	MGP_CAROLIEiJ_G0028667	Magi1 (MGP_CAROLIEiJ_G0028668) #15	Slc25a26 (MGP_CAROLIEiJ_G0028669) #17	Lrig1 (MGP_CAROLIEiJ_G0028670) #19	Kbtbd8 (MGP_CAROLIEiJ_G0028671) #22	Suclg2 (MGP_CAROLIEiJ_G0028672) #23	MGP_CAROLIEiJ_G0028673	Nup50l (MGP_CAROLIEiJ_G0028674)	MGP_CAROLIEiJ_G0028675 #25	MGP_CAROLIEiJ_G0028676 #26	MGP_CAROLIEiJ_G0028677 #27	MGP_CAROLIEiJ_G0028678	Arl6ip5 (MGP_CAROLIEiJ_G0028679) #29	MGP_CAROLIEiJ_G0028680	Mitf (MGP_CAROLIEiJ_G0028681) #32	Mdfic2 (MGP_CAROLIEiJ_G0028682) #33	Foxp1 (MGP_CAROLIEiJ_G0028683) #34	MGP_CAROLIEiJ_G0028684	Eif4e3 (MGP_CAROLIEiJ_G0028685) #36	Gpr27 (MGP_CAROLIEiJ_G0028686) #37
Shrew mouse	MODERN SPECIES	11	4930590J08Rik (MGP_PahariEiJ_G0022406)	Fgd5 (MGP_PahariEiJ_G0022407)	Nr2c2 (MGP_PahariEiJ_G0022408)	Mrps25 (MGP_PahariEiJ_G0022409)	Rbsn (MGP_PahariEiJ_G0022410)	Trh (MGP_PahariEiJ_G0022411)	Prickle2 (MGP_PahariEiJ_G0022412) #13	Adamts9 (MGP_PahariEiJ_G0022413) #14	MGP_PahariEiJ_G0022414	MGP_PahariEiJ_G0022415	MGP_PahariEiJ_G0022416	MGP_PahariEiJ_G0022417	Magi1 (MGP_PahariEiJ_G0022418) #15	Slc25a26 (MGP_PahariEiJ_G0022419) #17	Lrig1 (MGP_PahariEiJ_G0022420) #19	Kbtbd8 (MGP_PahariEiJ_G0022421) #22	Suclg2 (MGP_PahariEiJ_G0022422) #23	Tafa1 (MGP_PahariEiJ_G0022423)	Nup50l (MGP_PahariEiJ_G0022424)	Tafa4 (MGP_PahariEiJ_G0022425) #25	Eogt (MGP_PahariEiJ_G0022426) #26	Tmf1 (MGP_PahariEiJ_G0022427) #27	Uba3 (MGP_PahariEiJ_G0022428) #28	Arl6ip5 (MGP_PahariEiJ_G0022429) #29	Lmod3 (MGP_PahariEiJ_G0022430) #30	Frmd4b (MGP_PahariEiJ_G0022431) #31	Mitf (MGP_PahariEiJ_G0022432) #32	Mdfic2 (MGP_PahariEiJ_G0022433) #33	Foxp1 (MGP_PahariEiJ_G0022434) #34	MGP_PahariEiJ_G0022435	Eif4e3 (MGP_PahariEiJ_G0022436) #36
Rat	MODERN SPECIES	14	Nr2c2 (ENSRNOG00000010536)	Mrps25 (ENSRNOG00000010912)	Rbsn (ENSRNOG00000011391)	Trh (ENSRNOG00000011824)	Prickle2 (ENSRNOG00000012364) #13	Adamts9 (ENSRNOG00000023257) #14	Gm15737 (ENSRNOG00000064375)	ENSRNOG00000064824	Magi1 (ENSRNOG00000022060) #15	LOC100361920 (ENSRNOG00000052174)	ENSRNOG00000071067	Slc25a26 (ENSRNOG00000012831) #17	Lrig1 (ENSRNOG00000012952) #19	LOC687056 (ENSRNOG00000065327)	AABR07031972.1 (ENSRNOG00000046899)	Kbtbd8 (ENSRNOG00000013390) #22	Suclg2 (ENSRNOG00000005686) #23	LOC108353456 (ENSRNOG00000070575)	Nup50-ps1 (ENSRNOG00000024560)	Tafa4 (ENSRNOG00000005830) #25	Eogt (ENSRNOG00000024533) #26	Tmf1 (ENSRNOG00000056462) #27	Uba3 (ENSRNOG00000006221) #28	Arl6ip5 (ENSRNOG00000006818) #29	Lmod3 (ENSRNOG00000032443) #30	Frmd4b (ENSRNOG00000007764) #31	Mitf (ENSRNOG00000008658) #32	Mdfic2 (ENSRNOG00000064294) #33	Foxp1 (ENSRNOG00000009184) #34	Eif4e3 (ENSRNOG00000010301) #36	Gpr27 (ENSRNOG00000010880) #37
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00390000013951	ENSGT00940000154583	ENSGT00940000155615	ENSGT00440000033958.a	ENSGT00940000153655.B	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00440000035348.l	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Cricetinae	ANCESTRAL SPECIES	8	ENSGT00390000013951	ENSGT00940000154583	ENSGT00940000155615	ENSGT00440000033958.a	ENSGT00940000153655.B	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
Golden Hamster	MODERN SPECIES	643	Xpc (ENSMAUG00000019920)	Grip2 (ENSMAUG00000013630)	Ccdc174 (ENSMAUG00000010944)	4930590J08Rik (ENSMAUG00000015114)	Fgd5 (ENSMAUG00000015411)	Nr2c2 (ENSMAUG00000016840)	Rbsn (ENSMAUG00000010240)	Trh (ENSMAUG00000016316)	Prickle2 (ENSMAUG00000013569) #13	Adamts9 (ENSMAUG00000021440) #14	ENSMAUG00000010107	Magi1 (ENSMAUG00000021226) #15	ENSMAUG00000004998	Slc25a26 (ENSMAUG00000021604) #17	Lrig1 (ENSMAUG00000007470) #19	Kbtbd8 (ENSMAUG00000017081) #22	ENSMAUG00000009672	Suclg2 (ENSMAUG00000021321) #23	Tafa1 (ENSMAUG00000019067)	Tafa4 (ENSMAUG00000019968) #25	ENSMAUG00000020979	Eogt (ENSMAUG00000017534) #26	Tmf1 (ENSMAUG00000021427) #27	Uba3 (ENSMAUG00000017525) #28	Arl6ip5 (ENSMAUG00000009657) #29	Lmod3 (ENSMAUG00000010204) #30	Frmd4b (ENSMAUG00000007225) #31	Mitf (ENSMAUG00000004545) #32	Mdfic2 (ENSMAUG00000012915) #33	Foxp1 (ENSMAUG00000022171) #34	Eif4e3 (ENSMAUG00000019824) #36
Chinese hamster chok1gshd	MODERN SPECIES	144	Lsm3 (ENSCGRG00001017598)	Slc6a6 (ENSCGRG00001019005)	Grip2 (ENSCGRG00001021106)	Ccdc174 (ENSCGRG00001021754)	4930590J08Rik (ENSCGRG00001017889)	Fgd5 (ENSCGRG00001013433)	Nr2c2 (ENSCGRG00001009601)	Mrps25 (ENSCGRG00001016556)	Rbsn (ENSCGRG00001018030)	Trh (ENSCGRG00001019768)	Prickle2 (ENSCGRG00001005583) #13	Adamts9 (ENSCGRG00001014518) #14	Magi1 (ENSCGRG00001004939) #15	Slc25a26 (ENSCGRG00001000286) #17	Lrig1 (ENSCGRG00001020436) #19	Kbtbd8 (ENSCGRG00001004948) #22	ENSCGRG00001004433	Suclg2 (ENSCGRG00001011522) #23	Tafa1 (ENSCGRG00001014933)	Nup50l (ENSCGRG00001006226)	ENSCGRG00001008617	Tafa4 (ENSCGRG00001013503) #25	Eogt (ENSCGRG00001015087) #26	Tmf1 (ENSCGRG00001018858) #27	Uba3 (ENSCGRG00001022490) #28	Arl6ip5 (ENSCGRG00001018813) #29	Lmod3 (ENSCGRG00001010389) #30	Frmd4b (ENSCGRG00001020840) #31	Mitf (ENSCGRG00001011883) #32	Mdfic2 (ENSCGRG00001018361) #33	Foxp1 (ENSCGRG00001015802) #34
Cricetidae_B	ANCESTRAL SPECIES	14	ENSGT00390000013951	ENSGT00940000154583	ENSGT00940000155615	ENSGT00440000033958.a	ENSGT00940000153655.B	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00440000035348.l	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	22	ENSPEMG00000029711	Clybl (ENSPEMG00000009971)	Zic5 (ENSPEMG00000009681)	Zic2 (ENSPEMG00000007624)	ENSPEMG00000029092	Pcca (ENSPEMG00000009083)	ENSPEMG00000028700	ENSPEMG00000028267	Tmtc4 (ENSPEMG00000016034)	Nalcn (ENSPEMG00000015151)	ENSPEMG00000029599	Itgbl1 (ENSPEMG00000005341)	ENSPEMG00000029244	Fgf14 (ENSPEMG00000001132)	Slitrk5 (ENSPEMG00000025630)	ENSPEMG00000030779 #22	Slitrk6 (ENSPEMG00000019770)	Slitrk1 (ENSPEMG00000012529)	Trim52 (ENSPEMG00000026753)	Spry2 (ENSPEMG00000019411)	Ndfip2 (ENSPEMG00000019657)	Rbm26 (ENSPEMG00000019529)	Obi1 (ENSPEMG00000019512)	Pou4f1 (ENSPEMG00000019992)	Ednrb (ENSPEMG00000019481)	Slain1 (ENSPEMG00000019382)	Scel (ENSPEMG00000020065)	Mycbp2 (ENSPEMG00000019916)	Fbxl3 (ENSPEMG00000015689)	Cln5 (ENSPEMG00000026961)	Acod1 (ENSPEMG00000019858)
Northern American deer mouse	MODERN SPECIES	16	Slc6a6 (ENSPEMG00000016693)	Grip2 (ENSPEMG00000009285)	Ccdc174 (ENSPEMG00000011995)	4930590J08Rik (ENSPEMG00000016805)	Fgd5 (ENSPEMG00000005651)	Mrps25 (ENSPEMG00000015595)	Rbsn (ENSPEMG00000026045)	Trh (ENSPEMG00000027938)	Prickle2 (ENSPEMG00000008467) #13	Adamts9 (ENSPEMG00000001414) #14	Magi1 (ENSPEMG00000018842) #15	ENSPEMG00000029600	Slc25a26 (ENSPEMG00000016974) #17	Lrig1 (ENSPEMG00000013717) #19	ENSPEMG00000007390	ENSPEMG00000030152 #22	Suclg2 (ENSPEMG00000017086) #23	Tafa1 (ENSPEMG00000004313)	Nup50l (ENSPEMG00000030682)	Tafa4 (ENSPEMG00000009755) #25	Eogt (ENSPEMG00000010950) #26	Tmf1 (ENSPEMG00000012807) #27	Uba3 (ENSPEMG00000014697) #28	Arl6ip5 (ENSPEMG00000016527) #29	Lmod3 (ENSPEMG00000016784) #30	Frmd4b (ENSPEMG00000018860) #31	Mitf (ENSPEMG00000002848) #32	Mdfic2 (ENSPEMG00000002945) #33	ENSPEMG00000026818	Foxp1 (ENSPEMG00000010742) #34	Eif4e3 (ENSPEMG00000015380) #36
Prairie vole	MODERN SPECIES	84	Slc6a6 (ENSMOCG00000016250)	Grip2 (ENSMOCG00000015042)	ENSMOCG00000019764	ENSMOCG00000020723	4930590J08Rik (ENSMOCG00000001932)	Fgd5 (ENSMOCG00000018507)	Nr2c2 (ENSMOCG00000006010)	Mrps25 (ENSMOCG00000000775)	ENSMOCG00000020109	Trh (ENSMOCG00000020778)	Prickle2 (ENSMOCG00000009205) #13	Adamts9 (ENSMOCG00000020918) #14	Magi1 (ENSMOCG00000021420) #15	Slc25a26 (ENSMOCG00000012219) #17	Lrig1 (ENSMOCG00000016641) #19	Kbtbd8 (ENSMOCG00000014034) #22	ENSMOCG00000017135	Suclg2 (ENSMOCG00000019822) #23	Tafa1 (ENSMOCG00000005890)	Tafa4 (ENSMOCG00000019487) #25	Eogt (ENSMOCG00000010159) #26	Tmf1 (ENSMOCG00000021252) #27	Uba3 (ENSMOCG00000022540) #28	Arl6ip5 (ENSMOCG00000012711) #29	Lmod3 (ENSMOCG00000013878) #30	Frmd4b (ENSMOCG00000016753) #31	Mitf (ENSMOCG00000021092) #32	Mdfic2 (ENSMOCG00000007282) #33	Foxp1 (ENSMOCG00000013376) #34	Eif4e3 (ENSMOCG00000020297) #36	Gpr27 (ENSMOCG00000010723) #37
Laurasiatheria	ANCESTRAL SPECIES	2	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000163880	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00650000094763 #35	ENSGT00940000155865 #36
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000158653 #22
Common shrew	MODERN SPECIES	11215																KBTBD8 (ENSSARG00000000187) #22
Hedgehog	MODERN SPECIES	5561																KBTBD8 (ENSEEUG00000009586) #22
Laurasiatheria_a	ANCESTRAL SPECIES	3	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00650000094763 #35	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Artiodactyla	ANCESTRAL SPECIES	2	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
Suina	ANCESTRAL SPECIES	1	ENSGT00940000155048	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
Pig	MODERN SPECIES	4	FEZF2 (ENSSSCG00000011487)	ENSSSCG00000011489	SYNPR (ENSSSCG00000027617)	SNTN (ENSSSCG00000011492)	C3orf49 (ENSSSCG00000011490) #8	THOC7 (ENSSSCG00000011491) #9	ATXN7 (ENSSSCG00000011493) #10	PSMD6 (ENSSSCG00000011494) #11	PRICKLE2 (ENSSSCG00000011495) #13	ADAMTS9 (ENSSSCG00000011496) #14	ENSSSCG00000047543	MAGI1 (ENSSSCG00000011497) #15	SLC25A26 (ENSSSCG00000011498) #17	LRIG1 (ENSSSCG00000011499) #19	ENSSSCG00000046980	KBTBD8 (ENSSSCG00000011500) #22	SUCLG2 (ENSSSCG00000011501) #23	TAFA1 (ENSSSCG00000042118)	ENSSSCG00000036134	TAFA4 (ENSSSCG00000033199) #25	EOGT (ENSSSCG00000011504) #26	TMF1 (ENSSSCG00000011510) #27	UBA3 (ENSSSCG00000011506) #28	ARL6IP5 (ENSSSCG00000033154) #29	LMOD3 (ENSSSCG00000052599) #30	FRMD4B (ENSSSCG00000011511) #31	MITF (ENSSSCG00000011514) #32	ENSSSCG00000045079	MDFIC2 (ENSSSCG00000060340) #33	FOXP1 (ENSSSCG00000027675) #34	EIF4E3 (ENSSSCG00000011516) #36
Chacoan peccary	MODERN SPECIES	950	PTPRG (ENSCWAG00000012014)	C3orf14 (ENSCWAG00000012118)	FEZF2 (ENSCWAG00000012160)	CADPS (ENSCWAG00000012263)	SYNPR (ENSCWAG00000013911)	SNTN (ENSCWAG00000014159)	C3orf49 (ENSCWAG00000014198) #8	THOC7 (ENSCWAG00000014303) #9	ATXN7 (ENSCWAG00000014420) #10	PSMD6 (ENSCWAG00000014720) #11	PRICKLE2 (ENSCWAG00000014815) #13	ADAMTS9 (ENSCWAG00000014975) #14	MAGI1 (ENSCWAG00000015706) #15	SLC25A26 (ENSCWAG00000017276) #17	LRIG1 (ENSCWAG00000017334) #19	KBTBD8 (ENSCWAG00000017384) #22	SUCLG2 (ENSCWAG00000017444) #23	TAFA1 (ENSCWAG00000017513)	TAFA4 (ENSCWAG00000017540) #25	EOGT (ENSCWAG00000017579) #26	TMF1 (ENSCWAG00000017660) #27	UBA3 (ENSCWAG00000017763) #28	ARL6IP5 (ENSCWAG00000018288) #29	LMOD3 (ENSCWAG00000018312) #30	FRMD4B (ENSCWAG00000018343) #31	MITF (ENSCWAG00000018514) #32	MDFIC2 (ENSCWAG00000019169) #33	FOXP1 (ENSCWAG00000019255) #34	EIF4E3 (ENSCWAG00000020836) #36	GPR27 (ENSCWAG00000020855) #37	PROK2 (ENSCWAG00000020863)
Artiodactyla_a	ANCESTRAL SPECIES	18	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
Camelidae	ANCESTRAL SPECIES	7	ENSGT00940000155048	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
Alpaca	MODERN SPECIES	1516																ENSVPAG00000005676 #22	SUCLG2 (ENSVPAG00000005681) #23	TAFA1 (ENSVPAG00000005684)
Arabian camel	MODERN SPECIES	8	ENSCDRG00005020465	C3orf14 (ENSCDRG00005020482)	FEZF2 (ENSCDRG00005020488)	ENSCDRG00005020523	SYNPR (ENSCDRG00005020648)	SNTN (ENSCDRG00005020668)	C3orf49 (ENSCDRG00005020674) #8	THOC7 (ENSCDRG00005020683) #9	ATXN7 (ENSCDRG00005020697) #10	PSMD6 (ENSCDRG00005020711) #11	PRICKLE2 (ENSCDRG00005020751) #13	ADAMTS9 (ENSCDRG00005020777) #14	MAGI1 (ENSCDRG00005020840) #15	SLC25A26 (ENSCDRG00005021013) #17	LRIG1 (ENSCDRG00005021027) #19	KBTBD8 (ENSCDRG00005021054) #22	SUCLG2 (ENSCDRG00005021068) #23	TAFA1 (ENSCDRG00005021082)	TAFA4 (ENSCDRG00005021091) #25	EOGT (ENSCDRG00005021103) #26	TMF1 (ENSCDRG00005021118) #27	UBA3 (ENSCDRG00005021145) #28	ARL6IP5 (ENSCDRG00005021188) #29	LMOD3 (ENSCDRG00005003378) #30	FRMD4B (ENSCDRG00005003460) #31	MITF (ENSCDRG00005003570) #32	MDFIC2 (ENSCDRG00005003702) #33	FOXP1 (ENSCDRG00005003812) #34	EIF4E3 (ENSCDRG00005005567) #36	GPR27 (ENSCDRG00005005582) #37	PROK2 (ENSCDRG00005005609)
Artiodactyla_b	ANCESTRAL SPECIES	21	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
Cetacea	ANCESTRAL SPECIES	7	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT00950000183306	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873.z.a.a #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
Odontoceti	ANCESTRAL SPECIES	5	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT00950000183306	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873.z.a.b #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
Odontoceti_a	ANCESTRAL SPECIES	5	ENSGT00390000005214	ENSGT00940000160100	ENSGT00950000183306	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873.z.a.b #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
Odontoceti_b	ANCESTRAL SPECIES	6	ENSGT00950000183306	ENSGT00550000074840.y.a.d	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873.z.a.b #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00390000002517.a.b.b.c.b.a	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
Monodontidae	ANCESTRAL SPECIES	4	ENSGT00950000183306	ENSGT00550000074840.y.a.d	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873.z.a.b #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00390000002517.a.b.b.c.b.a	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
Beluga whale	MODERN SPECIES	28	CADPS (ENSDLEG00000013182)	ENSDLEG00000013121	SYNPR (ENSDLEG00000013106)	ENSDLEG00000013084	C3orf49 (ENSDLEG00000013067) #8	ENSDLEG00000013022 #9	ATXN7 (ENSDLEG00000012953) #10	PSMD6 (ENSDLEG00000012939) #11	PRICKLE2 (ENSDLEG00000012899) #13	ADAMTS9 (ENSDLEG00000010763) #14	MAGI1 (ENSDLEG00000008577) #15	ENSDLEG00000008167	SLC25A26 (ENSDLEG00000008090) #17	LRIG1 (ENSDLEG00000008041) #19	ENSDLEG00000008026	KBTBD8 (ENSDLEG00000008004) #22	SUCLG2 (ENSDLEG00000007909) #23	ENSDLEG00000007899	ENSDLEG00000007895	ENSDLEG00000007893	TAFA4 (ENSDLEG00000007891) #25	EOGT (ENSDLEG00000007861) #26	TMF1 (ENSDLEG00000007791) #27	UBA3 (ENSDLEG00000007767) #28	ARL6IP5 (ENSDLEG00000007750) #29	LMOD3 (ENSDLEG00000007747) #30	FRMD4B (ENSDLEG00000007734) #31	ENSDLEG00000007725	MITF (ENSDLEG00000007717) #32	MDFIC2 (ENSDLEG00000007714) #33	FOXP1 (ENSDLEG00000007703) #34
Narwhal	MODERN SPECIES	310	FEZF2 (ENSMMNG00015016721)	CADPS (ENSMMNG00015016924)	ENSMMNG00015017570	SYNPR (ENSMMNG00015017647)	ENSMMNG00015017780	C3orf49 (ENSMMNG00015017811) #8	THOC7 (ENSMMNG00015017848) #9	ATXN7 (ENSMMNG00015017959) #10	PSMD6 (ENSMMNG00015018161) #11	PRICKLE2 (ENSMMNG00015018213) #13	ADAMTS9 (ENSMMNG00015018336) #14	MAGI1 (ENSMMNG00015018757) #15	SLC25A26 (ENSMMNG00015019127) #17	LRIG1 (ENSMMNG00015019175) #19	ENSMMNG00015019238	KBTBD8 (ENSMMNG00015019270) #22	SUCLG2 (ENSMMNG00015019323) #23	TAFA1 (ENSMMNG00015019401)	TAFA4 (ENSMMNG00015019429) #25	ENSMMNG00015019447	EOGT (ENSMMNG00015019482) #26	TMF1 (ENSMMNG00015019536) #27	UBA3 (ENSMMNG00015019640) #28	ARL6IP5 (ENSMMNG00015019913) #29	LMOD3 (ENSMMNG00015019939) #30	FRMD4B (ENSMMNG00015019966) #31	MITF (ENSMMNG00015020021) #32	MDFIC2 (ENSMMNG00015020084) #33	FOXP1 (ENSMMNG00015020256) #34	ENSMMNG00015020607	EIF4E3 (ENSMMNG00015020620) #36
Vaquita	MODERN SPECIES	2	FEZF2 (ENSPSNG00000017856)	CADPS (ENSPSNG00000016609)	ENSPSNG00000016417	SYNPR (ENSPSNG00000016116)	ENSPSNG00000015956	C3orf49 (ENSPSNG00000015853) #8	THOC7 (ENSPSNG00000015780) #9	ATXN7 (ENSPSNG00000015407) #10	PSMD6 (ENSPSNG00000015223) #11	PRICKLE2 (ENSPSNG00000015122) #13	ADAMTS9 (ENSPSNG00000014985) #14	MAGI1 (ENSPSNG00000013508) #15	SLC25A26 (ENSPSNG00000013259) #17	LRIG1 (ENSPSNG00000013173) #19	ENSPSNG00000013140	KBTBD8 (ENSPSNG00000013050) #22	SUCLG2 (ENSPSNG00000012959) #23	TAFA1 (ENSPSNG00000012870)	ENSPSNG00000012855	TAFA4 (ENSPSNG00000012789) #25	EOGT (ENSPSNG00000012709) #26	TMF1 (ENSPSNG00000012619) #27	UBA3 (ENSPSNG00000012433) #28	ARL6IP5 (ENSPSNG00000012328) #29	LMOD3 (ENSPSNG00000012275) #30	ENSPSNG00000012258	FRMD4B (ENSPSNG00000012000) #31	ENSPSNG00000011964	ENSPSNG00000011931	MITF (ENSPSNG00000011317) #32	MDFIC2 (ENSPSNG00000011225) #33
Dolphin	MODERN SPECIES	3927																KBTBD8 (ENSTTRG00000012016) #22
Sperm whale	MODERN SPECIES	9	PTPRG (ENSPCTG00005016403)	C18H3orf14 (ENSPCTG00005016343)	FEZF2 (ENSPCTG00005016129)	CADPS (ENSPCTG00005014546)	SYNPR (ENSPCTG00005014237)	SNTN (ENSPCTG00005014164)	C3orf49 (ENSPCTG00005013993) #8	THOC7 (ENSPCTG00005013878) #9	ATXN7 (ENSPCTG00005013360) #10	PSMD6 (ENSPCTG00005013205) #11	PRICKLE2 (ENSPCTG00005013097) #13	ADAMTS9 (ENSPCTG00005012968) #14	MAGI1 (ENSPCTG00005011987) #15	SLC25A26 (ENSPCTG00005011855) #17	LRIG1 (ENSPCTG00005011798) #19	KBTBD8 (ENSPCTG00005011753) #22	ENSPCTG00005011712	SUCLG2 (ENSPCTG00005011614) #23	TAFA1 (ENSPCTG00005011548)	TAFA4 (ENSPCTG00005011477) #25	EOGT (ENSPCTG00005011366) #26	TMF1 (ENSPCTG00005010922) #27	UBA3 (ENSPCTG00005010435) #28	ARL6IP5 (ENSPCTG00005010327) #29	LMOD3 (ENSPCTG00005010268) #30	FRMD4B (ENSPCTG00005010026) #31	ENSPCTG00005009977	MITF (ENSPCTG00005009685) #32	MDFIC2 (ENSPCTG00005009636) #33	FOXP1 (ENSPCTG00005009284) #34	EIF4E3 (ENSPCTG00005009184) #36
Blue whale	MODERN SPECIES	2	C3orf14 (ENSBMSG00010014539)	FEZF2 (ENSBMSG00010014587)	CADPS (ENSBMSG00010014814)	SYNPR (ENSBMSG00010015614)	ENSBMSG00010015743	SNTN (ENSBMSG00010015768)	C3orf49 (ENSBMSG00010015790) #8	ENSBMSG00010015826 #9	ATXN7 (ENSBMSG00010015874) #10	PSMD6 (ENSBMSG00010015926) #11	PRICKLE2 (ENSBMSG00010015955) #13	ADAMTS9 (ENSBMSG00010016033) #14	MAGI1 (ENSBMSG00010016192) #15	SLC25A26 (ENSBMSG00010018085) #17	LRIG1 (ENSBMSG00010018168) #19	KBTBD8 (ENSBMSG00010018360) #22	SUCLG2 (ENSBMSG00010018400) #23	TAFA1 (ENSBMSG00010018438)	TAFA4 (ENSBMSG00010018478) #25	EOGT (ENSBMSG00010018516) #26	TMF1 (ENSBMSG00010018575) #27	UBA3 (ENSBMSG00010018750) #28	ARL6IP5 (ENSBMSG00010019130) #29	LMOD3 (ENSBMSG00010019153) #30	FRMD4B (ENSBMSG00010019228) #31	ENSBMSG00010019343	ENSBMSG00010019371	ENSBMSG00010019391	MITF (ENSBMSG00010019612) #32	MDFIC2 (ENSBMSG00010020784) #33	ENSBMSG00010020804
Pecora	ANCESTRAL SPECIES	17	ENSGT00940000155048	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a.p	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
Yarkand deer	MODERN SPECIES	16	FEZF2 (ENSCHYG00000014589)	ENSCHYG00000014655	ENSCHYG00000014745	SYNPR (ENSCHYG00000015063)	ENSCHYG00000015619	C3orf49 (ENSCHYG00000015763) #8	THOC7 (ENSCHYG00000016054) #9	ATXN7 (ENSCHYG00000016316) #10	PSMD6 (ENSCHYG00000016855) #11	PRICKLE2 (ENSCHYG00000016954) #13	ADAMTS9 (ENSCHYG00000017101) #14	MAGI1 (ENSCHYG00000018496) #15	ENSCHYG00000021268	SLC25A26 (ENSCHYG00000021357) #17	LRIG1 (ENSCHYG00000021539) #19	KBTBD8 (ENSCHYG00000022084) #22	SUCLG2 (ENSCHYG00000022142) #23	TAFA1 (ENSCHYG00000022393)	TAFA4 (ENSCHYG00000022432) #25	EOGT (ENSCHYG00000022524) #26	TMF1 (ENSCHYG00000022757) #27	UBA3 (ENSCHYG00000023036) #28	ARL6IP5 (ENSCHYG00000023632) #29	LMOD3 (ENSCHYG00000023655) #30	FRMD4B (ENSCHYG00000023741) #31	ENSCHYG00000024354	ENSCHYG00000024373	MITF (ENSCHYG00000024471) #32	MDFIC2 (ENSCHYG00000024686) #33	ENSCHYG00000024728	FOXP1 (ENSCHYG00000024873) #34
Percora_a	ANCESTRAL SPECIES	19	ENSGT00940000155048	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a.p	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
Bovidae	ANCESTRAL SPECIES	19	ENSGT00940000155048	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a.p	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000153886.a.a.k.b.b	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Caprinae	ANCESTRAL SPECIES	15	ENSGT00940000155048	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a.p	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000153886.a.a.k.b.b	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Goat	MODERN SPECIES	14	ENSCHIG00000016893	ENSCHIG00000019114	SYNPR (ENSCHIG00000026328)	SNTN (ENSCHIG00000013587)	C3orf49 (ENSCHIG00000024382) #8	THOC7 (ENSCHIG00000018603) #9	ATXN7 (ENSCHIG00000023713) #10	PSMD6 (ENSCHIG00000024309) #11	PRICKLE2 (ENSCHIG00000010654) #13	ADAMTS9 (ENSCHIG00000017918) #14	MAGI1 (ENSCHIG00000012723) #15	ENSCHIG00000008422	ENSCHIG00000012793	ENSCHIG00000002544 #17	LRIG1 (ENSCHIG00000012710) #19	KBTBD8 (ENSCHIG00000014682) #22	ENSCHIG00000023345	SUCLG2 (ENSCHIG00000019725) #23	TAFA4 (ENSCHIG00000013665) #25	EOGT (ENSCHIG00000014149) #26	TMF1 (ENSCHIG00000012583) #27	UBA3 (ENSCHIG00000015026) #28	ARL6IP5 (ENSCHIG00000021517) #29	LMOD3 (ENSCHIG00000017627) #30	FRMD4B (ENSCHIG00000015488) #31	ENSCHIG00000014889	MITF (ENSCHIG00000022111) #32	MDFIC2 (ENSCHIG00000017880) #33	FOXP1 (ENSCHIG00000017707) #34	EIF4E3 (ENSCHIG00000024333) #36	GPR27 (ENSCHIG00000006038) #37
Rambouillet Sheep	MODERN SPECIES	10	PTPRG (ENSOARG00020025302)	C3orf14 (ENSOARG00020025268)	FEZF2 (ENSOARG00020025251)	ENSOARG00020024987	SYNPR (ENSOARG00020024871)	SNTN (ENSOARG00020024841)	C3orf49 (ENSOARG00020024817) #8	THOC7 (ENSOARG00020024776) #9	ATXN7 (ENSOARG00020024681) #10	PSMD6 (ENSOARG00020024605) #11	PRICKLE2 (ENSOARG00020024549) #13	ADAMTS9 (ENSOARG00020024236) #14	MAGI1 (ENSOARG00020023373) #15	SLC25A26 (ENSOARG00020023224) #17	LRIG1 (ENSOARG00020023098) #19	KBTBD8 (ENSOARG00020023050) #22	ENSOARG00020023030	SUCLG2 (ENSOARG00020022864) #23	TAFA1 (ENSOARG00020022813)	EOGT (ENSOARG00020022578) #26	TMF1 (ENSOARG00020022407) #27	UBA3 (ENSOARG00020021782) #28	ARL6IP5 (ENSOARG00020021679) #29	LMOD3 (ENSOARG00020021653) #30	ENSOARG00020021609	FRMD4B (ENSOARG00020021286) #31	MITF (ENSOARG00020020821) #32	MDFIC2 (ENSOARG00020020710) #33	FOXP1 (ENSOARG00020017991) #34	GPR27 (ENSOARG00020017874) #37	PROK2 (ENSOARG00020017771)
Bovinae	ANCESTRAL SPECIES	16	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a.p	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00390000006192.nb	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000153886.a.a.k.b.b	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Bos	ANCESTRAL SPECIES	16	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a.p	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00390000006192.nb	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.a.a.a	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000153886.a.a.k.b.b	ENSGT00940000156326 #32	ENSGT00390000004856.w.a.a.b.b.a.a	ENSGT00730000111641 #33	ENSGT00940000159892 #34
Bos_b	ANCESTRAL SPECIES	17	ENSGT00590000083094.a.a.p	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT01100000263511.b.a.b.a.b.a.b.b.a.b.a.b.a.a.b.a.b	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00390000006192.nb	ENSGT00940000155820 #15	ENSGT00940000160625.k.a.b	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.a.a.a	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000153886.a.a.k.b.b	ENSGT00940000156326 #32	ENSGT00390000004856.w.a.a.b.b.a.a	ENSGT00730000111641 #33	ENSGT00940000159892 #34
Cow	MODERN SPECIES	14	SNTN (ENSBTAG00000013026)	C22H3orf49 (ENSBTAG00000039133) #8	THOC7 (ENSBTAG00000032872) #9	ATXN7 (ENSBTAG00000011287) #10	ENSBTAG00000052900	PSMD6 (ENSBTAG00000015112) #11	PRICKLE2 (ENSBTAG00000021835) #13	ADAMTS9 (ENSBTAG00000003165) #14	ENSBTAG00000019048	MAGI1 (ENSBTAG00000010581) #15	ENSBTAG00000050439	ENSBTAG00000051801	SLC25A26 (ENSBTAG00000037972) #17	ENSBTAG00000051201	LRIG1 (ENSBTAG00000010360) #19	KBTBD8 (ENSBTAG00000011081) #22	SUCLG2 (ENSBTAG00000009541) #23	ENSBTAG00000048492	TAFA1 (ENSBTAG00000019041)	ENSBTAG00000049502	TAFA4 (ENSBTAG00000003110) #25	EOGT (ENSBTAG00000022681) #26	TMF1 (ENSBTAG00000015554) #27	UBA3 (ENSBTAG00000015556) #28	ARL6IP5 (ENSBTAG00000021506) #29	LMOD3 (ENSBTAG00000021508) #30	ENSBTAG00000013059	FRMD4B (ENSBTAG00000007624) #31	MITF (ENSBTAG00000006679) #32	ENSBTAG00000009220	MDFIC2 (ENSBTAG00000048900) #33
Hybrid Bos Indicus	MODERN SPECIES	14	ENSBIXG00005030940	ENSBIXG00005030983	SYNPR (ENSBIXG00005031052)	SNTN (ENSBIXG00005031067)	THOC7 (ENSBIXG00005031087) #9	ATXN7 (ENSBIXG00005031097) #10	ENSBIXG00005031105	PRICKLE2 (ENSBIXG00005031115) #13	ADAMTS9 (ENSBIXG00005031151) #14	ENSBIXG00005031164	ENSBIXG00005031172	MAGI1 (ENSBIXG00005031190) #15	ENSBIXG00005031202	SLC25A26 (ENSBIXG00005031207) #17	LRIG1 (ENSBIXG00005031216) #19	KBTBD8 (ENSBIXG00005031227) #22	SUCLG2 (ENSBIXG00005031233) #23	ENSBIXG00005031245	TAFA1 (ENSBIXG00005031253)	TAFA4 (ENSBIXG00005031260) #25	EOGT (ENSBIXG00005031262) #26	TMF1 (ENSBIXG00005031267) #27	UBA3 (ENSBIXG00005031275) #28	ENSBIXG00005031278	ARL6IP5 (ENSBIXG00005031280) #29	LMOD3 (ENSBIXG00005031283) #30	FRMD4B (ENSBIXG00005031293) #31	ENSBIXG00005031301	ENSBIXG00005031303	MITF (ENSBIXG00005031308) #32	ENSBIXG00005031312
Bos_a	ANCESTRAL SPECIES	9	ENSGT00940000155048	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a.p	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00390000006192.nb	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000163880	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.a.a.a	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00390000004856.w.a.a.b.b.a.a	ENSGT00730000111641 #33	ENSGT00940000159892 #34
Wild yak	MODERN SPECIES	358													SLC25A26 (ENSBMUG00000011077) #17	LRIG1 (ENSBMUG00000011103) #19	ENSBMUG00000011132	KBTBD8 (ENSBMUG00000011155) #22	SUCLG2 (ENSBMUG00000011182) #23
Domestic yak	MODERN SPECIES	14	ENSBGRG00000026531	SYNPR (ENSBGRG00000026605)	SNTN (ENSBGRG00000026611)	ENSBGRG00000026614	C3orf49 (ENSBGRG00000026615) #8	THOC7 (ENSBGRG00000026618) #9	ATXN7 (ENSBGRG00000026626) #10	PRICKLE2 (ENSBGRG00000026631) #13	ADAMTS9 (ENSBGRG00000026643) #14	ENSBGRG00000010645	ENSBGRG00000010692	ENSBGRG00000010739	MAGI1 (ENSBGRG00000010872) #15	SLC25A26 (ENSBGRG00000012436) #17	LRIG1 (ENSBGRG00000012866) #19	KBTBD8 (ENSBGRG00000014548) #22	ENSBGRG00000014592	SUCLG2 (ENSBGRG00000014669) #23	TAFA1 (ENSBGRG00000015196)	ENSBGRG00000015251	TAFA4 (ENSBGRG00000015297) #25	EOGT (ENSBGRG00000015412) #26	TMF1 (ENSBGRG00000015776) #27	UBA3 (ENSBGRG00000016525) #28	ENSBGRG00000017411	ARL6IP5 (ENSBGRG00000017445) #29	LMOD3 (ENSBGRG00000017594) #30	ENSBGRG00000017643	FRMD4B (ENSBGRG00000017724) #31	MITF (ENSBGRG00000018873) #32	ENSBGRG00000019667
American bison	MODERN SPECIES	3257																ENSBBBG00000024921 #22	SUCLG2 (ENSBBBG00000024891) #23	TAFA1 (ENSBBBG00000024819)	TAFA4 (ENSBBBG00000024801) #25	ENSBBBG00000006511	GABRP (ENSBBBG00000000159)	KCNIP1 (ENSBBBG00000000215)	KCNMB1 (ENSBBBG00000008210)	LCP2 (ENSBBBG00000009034)	C5orf58 (ENSBBBG00000024487)	FOXI1 (ENSBBBG00000000270)	DOCK2 (ENSBBBG00000006373)	INSYN2B (ENSBBBG00000024274)	SPDL1 (ENSBBBG00000024260)	SLIT3 (ENSBBBG00000024241)	PANK3 (ENSBBBG00000008986)
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	1182																ENSMMSG00000022379 #22	OTOL1 (ENSMMSG00000022390)	ENSMMSG00000022397	SPTSSB (ENSMMSG00000022402)	NMD3 (ENSMMSG00000022408)	ENSMMSG00000022426	ENSMMSG00000022432	PPM1L (ENSMMSG00000022449)	ENSMMSG00000022471	KPNA4 (ENSMMSG00000009200)	TRIM59 (ENSMMSG00000009278)	SMC4 (ENSMMSG00000009327)	IFT80 (ENSMMSG00000009699)	C3orf80 (ENSMMSG00000009824)	ENSMMSG00000009838	IL12A (ENSMMSG00000009883)
Siberian musk deer	MODERN SPECIES	1222	SYNPR (ENSMMSG00000019035)	SNTN (ENSMMSG00000019427)	ENSMMSG00000019453	C3orf49 (ENSMMSG00000019471) #8	THOC7 (ENSMMSG00000019508) #9	ATXN7 (ENSMMSG00000019544) #10	PSMD6 (ENSMMSG00000019578) #11	PRICKLE2 (ENSMMSG00000019648) #13	ENSMMSG00000019702	ADAMTS9 (ENSMMSG00000019756) #14	ENSMMSG00000020165	MAGI1 (ENSMMSG00000020250) #15	SLC25A26 (ENSMMSG00000021168) #17	LRIG1 (ENSMMSG00000021235) #19	ENSMMSG00000021329	KBTBD8 (ENSMMSG00000021352) #22	ENSMMSG00000021399	SUCLG2 (ENSMMSG00000021420) #23	TAFA1 (ENSMMSG00000021464)	TAFA4 (ENSMMSG00000021498) #25	EOGT (ENSMMSG00000021538) #26	TMF1 (ENSMMSG00000013641) #27	UBA3 (ENSMMSG00000013729) #28	ARL6IP5 (ENSMMSG00000013836) #29	LMOD3 (ENSMMSG00000013861) #30	FRMD4B (ENSMMSG00000013878) #31	MITF (ENSMMSG00000013971) #32	MDFIC2 (ENSMMSG00000014534) #33	FOXP1 (ENSMMSG00000014620) #34	EIF4E3 (ENSMMSG00000015972) #36	GPR27 (ENSMMSG00000016039) #37
Laurasiatheria_b	ANCESTRAL SPECIES	2	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00650000094763 #35	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Carnivora	ANCESTRAL SPECIES	6	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00650000094763 #35	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Felidae	ANCESTRAL SPECIES	17	ENSGT00940000155048	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
Panthera	ANCESTRAL SPECIES	1	ENSGT00940000155048	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
Tiger	MODERN SPECIES	527												MAGI1 (ENSPTIG00000004210) #15	SLC25A26 (ENSPTIG00000001374) #17	LRIG1 (ENSPTIG00000000135) #19	ENSPTIG00000021661	KBTBD8 (ENSPTIG00000021601) #22	SUCLG2 (ENSPTIG00000021434) #23	TAFA1 (ENSPTIG00000021377)	TAFA4 (ENSPTIG00000021331) #25	EOGT (ENSPTIG00000021116) #26	TMF1 (ENSPTIG00000020979) #27	UBA3 (ENSPTIG00000020487) #28	ARL6IP5 (ENSPTIG00000020370) #29	LMOD3 (ENSPTIG00000020310) #30	FRMD4B (ENSPTIG00000020157) #31
Panthera_a	ANCESTRAL SPECIES		ENSGT00940000155048	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
lion	MODERN SPECIES	2	ENSPLOG00000000178	C3orf14 (ENSPLOG00000000186)	FEZF2 (ENSPLOG00000000192)	CADPS (ENSPLOG00000000293)	SYNPR (ENSPLOG00000000626)	SNTN (ENSPLOG00000000688)	C3orf49 (ENSPLOG00000000710) #8	THOC7 (ENSPLOG00000000726) #9	ATXN7 (ENSPLOG00000000770) #10	PSMD6 (ENSPLOG00000000825) #11	PRICKLE2 (ENSPLOG00000000862) #13	ADAMTS9 (ENSPLOG00000000956) #14	MAGI1 (ENSPLOG00000001257) #15	SLC25A26 (ENSPLOG00000001581) #17	LRIG1 (ENSPLOG00000001605) #19	KBTBD8 (ENSPLOG00000001624) #22	SUCLG2 (ENSPLOG00000001663) #23	TAFA1 (ENSPLOG00000001704)	TAFA4 (ENSPLOG00000001723) #25	EOGT (ENSPLOG00000001756) #26	TMF1 (ENSPLOG00000001823) #27	UBA3 (ENSPLOG00000001974) #28	ARL6IP5 (ENSPLOG00000002134) #29	LMOD3 (ENSPLOG00000002158) #30	FRMD4B (ENSPLOG00000002200) #31	MITF (ENSPLOG00000002275) #32	MDFIC2 (ENSPLOG00000002362) #33	FOXP1 (ENSPLOG00000002481) #34	EIF4E3 (ENSPLOG00000002754) #36	GPR27 (ENSPLOG00000002789) #37	PROK2 (ENSPLOG00000002807)
leopard	MODERN SPECIES	57	FEZF2 (ENSPPRG00000001538)	ENSPPRG00000002698	ENSPPRG00000003102	SYNPR (ENSPPRG00000003285)	SNTN (ENSPPRG00000003698)	C3orf49 (ENSPPRG00000003956) #8	THOC7 (ENSPPRG00000004022) #9	ENSPPRG00000004069	ATXN7 (ENSPPRG00000004611) #10	PSMD6 (ENSPPRG00000005003) #11	PRICKLE2 (ENSPPRG00000005251) #13	ADAMTS9 (ENSPPRG00000005550) #14	MAGI1 (ENSPPRG00000007510) #15	SLC25A26 (ENSPPRG00000007884) #17	LRIG1 (ENSPPRG00000008399) #19	KBTBD8 (ENSPPRG00000008562) #22	SUCLG2 (ENSPPRG00000010350) #23	TAFA1 (ENSPPRG00000010607)	TAFA4 (ENSPPRG00000010647) #25	EOGT (ENSPPRG00000011239) #26	TMF1 (ENSPPRG00000011772) #27	UBA3 (ENSPPRG00000012852) #28	ARL6IP5 (ENSPPRG00000013425) #29	LMOD3 (ENSPPRG00000013735) #30	FRMD4B (ENSPPRG00000014178) #31
Cat	MODERN SPECIES	1	ENSFCAG00000034355	C3orf14 (ENSFCAG00000045830)	FEZF2 (ENSFCAG00000012726)	CADPS (ENSFCAG00000012727)	SYNPR (ENSFCAG00000038136)	SNTN (ENSFCAG00000003859)	C3orf49 (ENSFCAG00000000570) #8	THOC7 (ENSFCAG00000023008) #9	ATXN7 (ENSFCAG00000031292) #10	PSMD6 (ENSFCAG00000000573) #11	PRICKLE2 (ENSFCAG00000012183) #13	ADAMTS9 (ENSFCAG00000001564) #14	MAGI1 (ENSFCAG00000009340) #15	SLC25A26 (ENSFCAG00000003149) #17	LRIG1 (ENSFCAG00000003151) #19	KBTBD8 (ENSFCAG00000011921) #22	SUCLG2 (ENSFCAG00000007716) #23	TAFA1 (ENSFCAG00000041196)	TAFA4 (ENSFCAG00000031787) #25	EOGT (ENSFCAG00000006082) #26	TMF1 (ENSFCAG00000027162) #27	UBA3 (ENSFCAG00000023111) #28	ARL6IP5 (ENSFCAG00000041359) #29	LMOD3 (ENSFCAG00000009020) #30	FRMD4B (ENSFCAG00000009021) #31	ENSFCAG00000034689	MITF (ENSFCAG00000024419) #32	MDFIC2 (ENSFCAG00000026251) #33	FOXP1 (ENSFCAG00000023059) #34	EIF4E3 (ENSFCAG00000025548) #36	GPR27 (ENSFCAG00000041717) #37
Caniformia	ANCESTRAL SPECIES	4	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00650000094763 #35	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Canidae	ANCESTRAL SPECIES		ENSGT00390000005214.a	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00390000005052.s.a.a.b	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000163880	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00650000094763 #35	ENSGT00940000155865 #36
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00390000005214.a	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00390000005052.s.a.a.b	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
Dingo	MODERN SPECIES	401	C3orf14 (ENSCAFG00020010549)	FEZF2 (ENSCAFG00020010552)	ENSCAFG00020010590	SYNPR (ENSCAFG00020010764)	SNTN (ENSCAFG00020010778)	C3orf49 (ENSCAFG00020010782) #8	THOC7 (ENSCAFG00020010785) #9	ATXN7 (ENSCAFG00020010789) #10	PSMD6 (ENSCAFG00020010838) #11	PRICKLE2 (ENSCAFG00020010850) #13	ADAMTS9 (ENSCAFG00020010936) #14	MAGI1 (ENSCAFG00020011230) #15	ENSCAFG00020011579	SLC25A26 (ENSCAFG00020011583) #17	LRIG1 (ENSCAFG00020011611) #19	KBTBD8 (ENSCAFG00020011839) #22	SUCLG2 (ENSCAFG00020011840) #23	ENSCAFG00020011847	TAFA4 (ENSCAFG00020011851) #25	ENSCAFG00020011853	EOGT (ENSCAFG00020011855) #26	TMF1 (ENSCAFG00020011872) #27	UBA3 (ENSCAFG00020012058) #28	ARL6IP5 (ENSCAFG00020012069) #29	LMOD3 (ENSCAFG00020012071) #30	FRMD4B (ENSCAFG00020012082) #31	MITF (ENSCAFG00020012176) #32	MDFIC2 (ENSCAFG00020012180) #33	FOXP1 (ENSCAFG00020012311) #34	EIF4E3 (ENSCAFG00020016724) #36	GPR27 (ENSCAFG00020016727) #37
Dog	MODERN SPECIES	12	PTPRG (ENSCAFG00845015120)	ENSCAFG00845015023	FEZF2 (ENSCAFG00845014997)	ENSCAFG00845014108	SYNPR (ENSCAFG00845013755)	SNTN (ENSCAFG00845013709)	C20H3orf49 (ENSCAFG00845013688) #8	THOC7 (ENSCAFG00845013663) #9	ATXN7 (ENSCAFG00845013551) #10	PSMD6 (ENSCAFG00845013485) #11	PRICKLE2 (ENSCAFG00845013396) #13	ADAMTS9 (ENSCAFG00845012850) #14	MAGI1 (ENSCAFG00845012111) #15	SLC25A26 (ENSCAFG00845011731) #17	LRIG1 (ENSCAFG00845011565) #19	KBTBD8 (ENSCAFG00845011463) #22	SUCLG2 (ENSCAFG00845011161) #23	TAFA1 (ENSCAFG00845011082)	TAFA4 (ENSCAFG00845011056) #25	EOGT (ENSCAFG00845010941) #26	TMF1 (ENSCAFG00845010825) #27	UBA3 (ENSCAFG00845010556) #28	ARL6IP5 (ENSCAFG00845010437) #29	LMOD3 (ENSCAFG00845010392) #30	FRMD4B (ENSCAFG00845010033) #31	MITF (ENSCAFG00845009666) #32	MDFIC2 (ENSCAFG00845009570) #33	FOXP1 (ENSCAFG00845008552) #34	ENSCAFG00845007732 #36	GPR27 (ENSCAFG00845007528) #37	PROK2 (ENSCAFG00845007491)
Red fox	MODERN SPECIES	5	ENSVVUG00000014819	SYNPR (ENSVVUG00000014802)	SNTN (ENSVVUG00000014798)	CUNH3orf49 (ENSVVUG00000014791) #8	ENSVVUG00000014789	THOC7 (ENSVVUG00000014787) #9	ATXN7 (ENSVVUG00000014784) #10	PSMD6 (ENSVVUG00000014782) #11	PRICKLE2 (ENSVVUG00000014773) #13	ADAMTS9 (ENSVVUG00000014705) #14	ENSVVUG00000014685	MAGI1 (ENSVVUG00000014645) #15	ENSVVUG00000014619	SLC25A26 (ENSVVUG00000014581) #17	LRIG1 (ENSVVUG00000014568) #19	KBTBD8 (ENSVVUG00000014553) #22	SUCLG2 (ENSVVUG00000014528) #23	ENSVVUG00000014499	FAM19A4 (ENSVVUG00000014489) #25	EOGT (ENSVVUG00000014456) #26	TMF1 (ENSVVUG00000014445) #27	UBA3 (ENSVVUG00000014100) #28	ARL6IP5 (ENSVVUG00000014070) #29	LMOD3 (ENSVVUG00000014067) #30	FRMD4B (ENSVVUG00000014012) #31	MITF (ENSVVUG00000013975) #32	MDFIC2 (ENSVVUG00000013970) #33	FOXP1 (ENSVVUG00000013954) #34	ENSVVUG00000013952 #35	ENSVVUG00000013947 #36	PROK2 (ENSVVUG00000013944)
Caniformia_b	ANCESTRAL SPECIES	16	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000163880	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Mustelinae	ANCESTRAL SPECIES	18	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000163880	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.b #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00910000146944
Ferret	MODERN SPECIES	163	SYNPR (ENSMPUG00000016922)	SNTN (ENSMPUG00000016924)	C3orf49 (ENSMPUG00000016925) #8	THOC7 (ENSMPUG00000016928) #9	ATXN7 (ENSMPUG00000016932) #10	PSMD6 (ENSMPUG00000016933) #11	PRICKLE2 (ENSMPUG00000016934) #13	ADAMTS9 (ENSMPUG00000016936) #14	ENSMPUG00000016938	MAGI1 (ENSMPUG00000016939) #15	ENSMPUG00000016943	SLC25A26 (ENSMPUG00000016944) #17	LRIG1 (ENSMPUG00000016945) #19	ENSMPUG00000016947	ENSMPUG00000016948	KBTBD8 (ENSMPUG00000016949) #22	SUCLG2 (ENSMPUG00000016950) #23	TAFA4 (ENSMPUG00000016951) #25	EOGT (ENSMPUG00000016952) #26	TMF1 (ENSMPUG00000016957) #27	UBA3 (ENSMPUG00000016958) #28	ARL6IP5 (ENSMPUG00000016965) #29	LMOD3 (ENSMPUG00000016967) #30	FRMD4B (ENSMPUG00000016969) #31	MITF (ENSMPUG00000016972) #32	FOXP1 (ENSMPUG00000017001) #34	EIF4E3 (ENSMPUG00000017002) #36	PROK2 (ENSMPUG00000017003)	RYBP (ENSMPUG00000017004)	SHQ1 (ENSMPUG00000017006)	GXYLT2 (ENSMPUG00000017007)
American mink	MODERN SPECIES	80	PTPRG (ENSNVIG00000011803)	C3orf14 (ENSNVIG00000011751)	FEZF2 (ENSNVIG00000011725)	CADPS (ENSNVIG00000011647)	SYNPR (ENSNVIG00000011537)	SNTN (ENSNVIG00000011525)	C3orf49 (ENSNVIG00000011510) #8	THOC7 (ENSNVIG00000011462) #9	ATXN7 (ENSNVIG00000011425) #10	PSMD6 (ENSNVIG00000011381) #11	PRICKLE2 (ENSNVIG00000011360) #13	ADAMTS9 (ENSNVIG00000011223) #14	MAGI1 (ENSNVIG00000010985) #15	SAMC (ENSNVIG00000010947) #17	LRIG1 (ENSNVIG00000010896) #19	KBTB8 (ENSNVIG00000010879) #22	ENSNVIG00000010868	SUCLG2 (ENSNVIG00000010846) #23	F19A1 (ENSNVIG00000010805)	TAFA4 (ENSNVIG00000010789) #25
Ursidae	ANCESTRAL SPECIES	11	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00950000185438	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000018085.a.b.a.c.b	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a.l #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Giant Panda	MODERN SPECIES	14	FEZF2 (ENSAMEG00000029919)	CADPS (ENSAMEG00000015310)	SYNPR (ENSAMEG00000024916)	SNTN (ENSAMEG00000015296)	C3orf49 (ENSAMEG00000015295) #8	THOC7 (ENSAMEG00000015287) #9	ATXN7 (ENSAMEG00000015260) #10	PSMD6 (ENSAMEG00000015235) #11	PRICKLE2 (ENSAMEG00000007612) #13	ADAMTS9 (ENSAMEG00000007511) #14	MAGI1 (ENSAMEG00000014617) #15	ENSAMEG00000027547	ENSAMEG00000028898	SLC25A26 (ENSAMEG00000025165) #17	LRIG1 (ENSAMEG00000009584) #19	KBTBD8 (ENSAMEG00000004044) #22	ENSAMEG00000004042	SUCLG2 (ENSAMEG00000002805) #23	TAFA1 (ENSAMEG00000025281)	ENSAMEG00000028238 #25	EOGT (ENSAMEG00000010169) #26	TMF1 (ENSAMEG00000010131) #27	UBA3 (ENSAMEG00000010117) #28	ARL6IP5 (ENSAMEG00000010112) #29	LMOD3 (ENSAMEG00000010109) #30	FRMD4B (ENSAMEG00000010064) #31	MITF (ENSAMEG00000017117) #32	MDFIC2 (ENSAMEG00000025889) #33	FOXP1 (ENSAMEG00000015051) #34	EIF4E3 (ENSAMEG00000015115) #36	PROK2 (ENSAMEG00000028947)
Ursus	ANCESTRAL SPECIES	89	ENSGT00940000155048	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00950000185438	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000018085.a.b.a.c.b	ENSGT00390000010170.a.a #23	ENSGT00940000163880	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a.l #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
American black bear	MODERN SPECIES	178																ENSUAMG00000005083 #22
Polar bear	MODERN SPECIES	251	C3orf14 (ENSUMAG00000023496)	ENSUMAG00000023498	ENSUMAG00000023502	SYNPR (ENSUMAG00000023503)	SNTN (ENSUMAG00000023507)	C3orf49 (ENSUMAG00000023511) #8	ENSUMAG00000023513 #9	ENSUMAG00000023514	ATXN7 (ENSUMAG00000023518) #10	ENSUMAG00000023522 #11	ENSUMAG00000023532 #14	MAGI1 (ENSUMAG00000023561) #15	ENSUMAG00000023661	SLC25A26 (ENSUMAG00000023664) #17	LRIG1 (ENSUMAG00000023677) #19	KBTBD8 (ENSUMAG00000023807) #22	ENSUMAG00000023808	SUCLG2 (ENSUMAG00000023841) #23	ENSUMAG00000023985	TAFA4 (ENSUMAG00000023986) #25	EOGT (ENSUMAG00000023987) #26	TMF1 (ENSUMAG00000023989) #27	UBA3 (ENSUMAG00000023994) #28	ARL6IP5 (ENSUMAG00000023996) #29	LMOD3 (ENSUMAG00000023997) #30	ENSUMAG00000023998	FRMD4B (ENSUMAG00000023999) #31	MITF (ENSUMAG00000024001) #32	MDFIC2 (ENSUMAG00000024017) #33	FOXP1 (ENSUMAG00000024020) #34	EIF4E3 (ENSUMAG00000024023) #36
Laurasiatheria_c	ANCESTRAL SPECIES	2	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT00950000183306	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
Equus	ANCESTRAL SPECIES	5	ENSGT00910000148820	ENSGT00390000005214	ENSGT00940000160100	ENSGT00950000183306	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000163880	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Donkey	MODERN SPECIES	13	ENSEASG00005001443	C3orf14 (ENSEASG00005028011)	FEZF2 (ENSEASG00005001451)	CADPS (ENSEASG00005001465)	SYNPR (ENSEASG00005001493)	SNTN (ENSEASG00005033677)	C3orf49 (ENSEASG00005001501) #8	THOC7 (ENSEASG00005001507) #9	ATXN7 (ENSEASG00005001537) #10	PSMD6 (ENSEASG00005001544) #11	PRICKLE2 (ENSEASG00005001555) #13	ADAMTS9 (ENSEASG00005001635) #14	MAGI1 (ENSEASG00005001878) #15	SLC25A26 (ENSEASG00005001893) #17	LRIG1 (ENSEASG00005001905) #19	KBTBD8 (ENSEASG00005001917) #22	SUCLG2 (ENSEASG00005001928) #23	ENSEASG00005030093	TAFA4 (ENSEASG00005034543) #25	EOGT (ENSEASG00005001959) #26	TMF1 (ENSEASG00005001971) #27	UBA3 (ENSEASG00005002027) #28	ARL6IP5 (ENSEASG00005031455) #29	LMOD3 (ENSEASG00005002161) #30	FRMD4B (ENSEASG00005002162) #31	MITF (ENSEASG00005002172) #32	MDFIC2 (ENSEASG00005002178) #33	FOXP1 (ENSEASG00005002186) #34	EIF4E3 (ENSEASG00005002204) #36	GPR27 (ENSEASG00005027995) #37	PROK2 (ENSEASG00005033363)
Horse	MODERN SPECIES	7	PTPRG (ENSECAG00000007607)	C16H3orf14 (ENSECAG00000001334)	FEZF2 (ENSECAG00000021037)	CADPS (ENSECAG00000014486)	SYNPR (ENSECAG00000011166)	SNTN (ENSECAG00000049202)	C16H3orf49 (ENSECAG00000010234) #8	THOC7 (ENSECAG00000000497) #9	ATXN7 (ENSECAG00000024801) #10	PSMD6 (ENSECAG00000021193) #11	PRICKLE2 (ENSECAG00000018642) #13	ADAMTS9 (ENSECAG00000019880) #14	MAGI1 (ENSECAG00000016431) #15	SLC25A26 (ENSECAG00000015020) #17	LRIG1 (ENSECAG00000009328) #19	KBTBD8 (ENSECAG00000007088) #22	SUCLG2 (ENSECAG00000023254) #23	ENSECAG00000029066	TAFA1 (ENSECAG00000032991)	TAFA4 (ENSECAG00000038857) #25	EOGT (ENSECAG00000012398) #26	TMF1 (ENSECAG00000023300) #27	UBA3 (ENSECAG00000009659) #28	LMOD3 (ENSECAG00000008709) #30	FRMD4B (ENSECAG00000016131) #31	MITF (ENSECAG00000005360) #32	MDFIC2 (ENSECAG00000029574) #33	ENSECAG00000054670	FOXP1 (ENSECAG00000008974) #34	EIF4E3 (ENSECAG00000004471) #36	GPR27 (ENSECAG00000032664) #37
Chiroptera	ANCESTRAL SPECIES	49	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT00950000183306	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
Megabat	MODERN SPECIES	1797																KBTBD8 (ENSPVAG00000012537) #22
Microchiroptera	ANCESTRAL SPECIES	47	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT00950000183306	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
Greater horseshoe bat	MODERN SPECIES	8	FEZF2 (ENSRFEG00010010350)	ENSRFEG00010010393	CADPS (ENSRFEG00010010542)	SYNPR (ENSRFEG00010011126)	SNTN (ENSRFEG00010011418)	THOC7 (ENSRFEG00010011747) #9	ATXN7 (ENSRFEG00010011808) #10	PSMD6 (ENSRFEG00010011978) #11	PRICKLE2 (ENSRFEG00010012124) #13	ADAMTS9 (ENSRFEG00010012302) #14	MAGI1 (ENSRFEG00010012442) #15	RPL39_1 (ENSRFEG00010013864)	SLC25A26 (ENSRFEG00010013884) #17	LRIG1 (ENSRFEG00010013972) #19	ENSRFEG00010014101	KBTBD8 (ENSRFEG00010014117) #22	ENSRFEG00010014173	SUCLG2 (ENSRFEG00010014251) #23	TAFA1 (ENSRFEG00010014395)	TAFA4 (ENSRFEG00010014473) #25	EOGT (ENSRFEG00010014576) #26	TMF1 (ENSRFEG00010014693) #27	UBA3 (ENSRFEG00010015449) #28	ARL6IP5 (ENSRFEG00010015607) #29	LMOD3 (ENSRFEG00010015673) #30	FRMD4B (ENSRFEG00010015709) #31	MITF (ENSRFEG00010015864) #32	MDFIC2 (ENSRFEG00010016226) #33	FOXP1 (ENSRFEG00010016312) #34	ENSRFEG00010016733	EIF4E3 (ENSRFEG00010016785) #36
Microbat	MODERN SPECIES	992	ENSMLUG00000007649	ENSMLUG00000024127	SYNPR (ENSMLUG00000005177)	SNTN (ENSMLUG00000005191)	ENSMLUG00000025810 #7	ENSMLUG00000005523	C3orf49 (ENSMLUG00000012051) #8	ENSMLUG00000012060 #9	ATXN7 (ENSMLUG00000014221) #10	PSMD6 (ENSMLUG00000014226) #11	PRICKLE2 (ENSMLUG00000026532) #13	ADAMTS9 (ENSMLUG00000014168) #14	MAGI1 (ENSMLUG00000000633) #15	SLC25A26 (ENSMLUG00000002678) #17	LRIG1 (ENSMLUG00000002683) #19	KBTBD8 (ENSMLUG00000010372) #22
Atlantogenata	ANCESTRAL SPECIES	34														ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00390000013995.b.a	ENSGT00390000007605
Xenarthra	ANCESTRAL SPECIES	1310														ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22
Sloth	MODERN SPECIES	4960																KBTBD8 (ENSCHOG00000010973) #22
Armadillo	MODERN SPECIES	683														SLC25A26 (ENSDNOG00000030960) #17	LRIG1 (ENSDNOG00000014083) #19	KBTBD8 (ENSDNOG00000039699) #22
Afrotheria	ANCESTRAL SPECIES	32														ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00390000013995.b.a	ENSGT00390000007605	ENSGT00940000158065
Afrotheria_a	ANCESTRAL SPECIES	32														ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00390000013995.b.a	ENSGT00390000007605	ENSGT00940000158065
Elephant	MODERN SPECIES	49	TMUB1 (ENSLAFG00000032444)	FASTK (ENSLAFG00000008796)	SLC4A2 (ENSLAFG00000008790)	CDK5 (ENSLAFG00000008785)	ASIC3 (ENSLAFG00000020597)	ABCB8 (ENSLAFG00000008773)	ATG9B (ENSLAFG00000026645)	NOS3 (ENSLAFG00000007006)	KCNH2 (ENSLAFG00000003073)	ENSLAFG00000014523	ENSLAFG00000029554	ENSLAFG00000027480	ENSLAFG00000007076	SLC25A26 (ENSLAFG00000013666) #17	ENSLAFG00000013671 #19	KBTBD8 (ENSLAFG00000002923) #22	SUCLG2 (ENSLAFG00000015283) #23	TAFA4 (ENSLAFG00000004079) #25	EOGT (ENSLAFG00000004080) #26	TMF1 (ENSLAFG00000004084) #27	UBA3 (ENSLAFG00000004088) #28	ARL6IP5 (ENSLAFG00000004092) #29	LMOD3 (ENSLAFG00000032473) #30	FRMD4B (ENSLAFG00000001441) #31	MITF (ENSLAFG00000023153) #32	FOXP1 (ENSLAFG00000008006) #34	EIF4E3 (ENSLAFG00000001998) #36	GPR27 (ENSLAFG00000015911) #37	RYBP (ENSLAFG00000003133)	ENSLAFG00000017601	GXYLT2 (ENSLAFG00000017357)
Hyrax	MODERN SPECIES	4588																KBTBD8 (ENSPCAG00000014074) #22
Tenrec	MODERN SPECIES	16366																KBTBD8 (ENSETEG00000007937) #22
Marsupialia	ANCESTRAL SPECIES	14	ENSGT00940000155048	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873.c #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000163880	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
Marsupialia_b	ANCESTRAL SPECIES	14	ENSGT00940000155048	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873.c #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000163880	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
Diprotodontia	ANCESTRAL SPECIES	12	ENSGT00940000155048	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873.c #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000163880	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
Diprotodontia_a	ANCESTRAL SPECIES	10	ENSGT00940000155048	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873.c #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000163880	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00940000162026
koala	MODERN SPECIES	122																KBTBD8 (ENSPCIG00000017120) #22	SUCLG2 (ENSPCIG00000017113) #23	ENSPCIG00000009129	ENSPCIG00000036876	ENSPCIG00000035890	TAFA4 (ENSPCIG00000009587) #25	EOGT (ENSPCIG00000010307) #26	TMF1 (ENSPCIG00000010308) #27	UBA3 (ENSPCIG00000010311) #28	ARL6IP5 (ENSPCIG00000011806) #29	LMOD3 (ENSPCIG00000011808) #30	FRMD4B (ENSPCIG00000011810) #31	MITF (ENSPCIG00000011814) #32	MDFIC2 (ENSPCIG00000011815) #33	FOXP1 (ENSPCIG00000011818) #34	EIF4E3 (ENSPCIG00000011825) #36
Common wonbat	MODERN SPECIES	1012	ENSVURG00010004992	FEZF2 (ENSVURG00010005007)	ENSVURG00010005137	SYNPR (ENSVURG00010005907)	SNTN (ENSVURG00010005958)	C3orf49 (ENSVURG00010005993) #8	ENSVURG00010006017 #9	ATXN7 (ENSVURG00010006027) #10	PSMD6 (ENSVURG00010006048) #11	PRICKLE2 (ENSVURG00010006134) #13	ADAMTS9 (ENSVURG00010006187) #14	MAGI1 (ENSVURG00010006288) #15	ENSVURG00010006497	SLC25A26 (ENSVURG00010006536) #17	LRIG1 (ENSVURG00010006601) #19	KBTBD8 (ENSVURG00010007548) #22	SUCLG2 (ENSVURG00010007574) #23	ENSVURG00010007597	TAFA1 (ENSVURG00010007612)	TAFA4 (ENSVURG00010007643) #25	EOGT (ENSVURG00010007661) #26	TMF1 (ENSVURG00010007723) #27	UBA3 (ENSVURG00010007758) #28	ARL6IP5 (ENSVURG00010007801) #29	LMOD3 (ENSVURG00010007809) #30	FRMD4B (ENSVURG00010007860) #31	MITF (ENSVURG00010007937) #32	MDFIC2 (ENSVURG00010008101) #33	FOXP1 (ENSVURG00010008144) #34	EIF4E3 (ENSVURG00010008277) #36	ENSVURG00010008289
Tasmanian devil	MODERN SPECIES		PTPRG (ENSSHAG00000017902)	ENSSHAG00000018343	FEZF2 (ENSSHAG00000027636)	ENSSHAG00000018442	SYNPR (ENSSHAG00000030353)	SNTN (ENSSHAG00000009729)	C3orf49 (ENSSHAG00000011430) #8	THOC7 (ENSSHAG00000011615) #9	ATXN7 (ENSSHAG00000012231) #10	PSMD6 (ENSSHAG00000012357) #11	PRICKLE2 (ENSSHAG00000013056) #13	ADAMTS9 (ENSSHAG00000014822) #14	MAGI1 (ENSSHAG00000017371) #15	SLC25A26 (ENSSHAG00000024838) #17	LRIG1 (ENSSHAG00000011408) #19	KBTBD8 (ENSSHAG00000032152) #22	SUCLG2 (ENSSHAG00000029903) #23	ENSSHAG00000025563	TAFA4 (ENSSHAG00000024690) #25	EOGT (ENSSHAG00000016174) #26	UBA3 (ENSSHAG00000016367) #28	TMF1 (ENSSHAG00000016301) #27	ARL6IP5 (ENSSHAG00000029654) #29	LMOD3 (ENSSHAG00000016539) #30	FRMD4B (ENSSHAG00000013729) #31	MITF (ENSSHAG00000017522) #32	MDFIC2 (ENSSHAG00000030086) #33	FOXP1 (ENSSHAG00000026979) #34	EIF4E3 (ENSSHAG00000008775) #36	GPR27 (ENSSHAG00000022511) #37	ENSSHAG00000031144
Opossum	MODERN SPECIES	5	SNTN (ENSMODG00000050561)	C3orf49 (ENSMODG00000002989) #8	ENSMODG00000003009 #9	ATXN7 (ENSMODG00000025517) #10	PSMD6 (ENSMODG00000003074) #11	PRICKLE2 (ENSMODG00000003090) #13	ADAMTS9 (ENSMODG00000003140) #14	ENSMODG00000038875	MAGI1 (ENSMODG00000003153) #15	ENSMODG00000027650	ENSMODG00000027350	ENSMODG00000051446	ENSMODG00000038114	SLC25A26 (ENSMODG00000003248) #17	LRIG1 (ENSMODG00000003264) #19	KBTBD8 (ENSMODG00000003276) #22	SUCLG2 (ENSMODG00000003294) #23	ENSMODG00000003405	TAFA4 (ENSMODG00000029617) #25	ENSMODG00000003450 #26	TMF1 (ENSMODG00000003468) #27	UBA3 (ENSMODG00000003622) #28	ARL6IP5 (ENSMODG00000049779) #29	LMOD3 (ENSMODG00000003639) #30	FRMD4B (ENSMODG00000003688) #31	MITF (ENSMODG00000003754) #32	ENSMODG00000039201	ENSMODG00000028024	MDFIC2 (ENSMODG00000028056) #33	ENSMODG00000027781	FOXP1 (ENSMODG00000003884) #34
Platypus	MODERN SPECIES	84	ENSOANG00000050573	PTPRG (ENSOANG00000006011)	ENSOANG00000043273	FEZF2 (ENSOANG00000006012)	ENSOANG00000006013	SYNPR (ENSOANG00000001762)	C3orf49 (ENSOANG00000000242) #8	THOC7 (ENSOANG00000050840) #9	ATXN7 (ENSOANG00000044322) #10	PRICKLE2 (ENSOANG00000011930) #13	ADAMTS9 (ENSOANG00000002273) #14	MAGI1 (ENSOANG00000030734) #15	SLC25A26 (ENSOANG00000021347) #17	ENSOANG00000012850	LRIG1 (ENSOANG00000012379) #19	KBTBD8 (ENSOANG00000005913) #22	SUCLG2 (ENSOANG00000001375) #23	ENSOANG00000011749	TAFA4 (ENSOANG00000049725) #25	EOGT (ENSOANG00000000498) #26	TMF1 (ENSOANG00000000495) #27	UBA3 (ENSOANG00000000489) #28	ARL6IP5 (ENSOANG00000000488) #29	FRMD4B (ENSOANG00000000486) #31	MITF (ENSOANG00000012406) #32	MDFIC2 (ENSOANG00000051152) #33	FOXP1 (ENSOANG00000013093) #34	ENSOANG00000013094 #36	GPR27 (ENSOANG00000005763) #37	ENSOANG00000050666	ENSOANG00000050965
Sauria	ANCESTRAL SPECIES	13	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00940000173126	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00390000011238	ENSGT00940000165309	ENSGT00730000111641 #33	ENSGT00940000159892 #34
Archelosauria	ANCESTRAL SPECIES	17	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00940000173126	ENSGT00390000002873 #9	ENSGT00950000185997	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00390000011238	ENSGT00940000165309	ENSGT00730000111641 #33	ENSGT00940000159892 #34
Archosauria	ANCESTRAL SPECIES	24	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000002873 #9	ENSGT00950000185997	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00940000165309	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36
Aves	ANCESTRAL SPECIES	29	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000002873 #9	ENSGT00950000185997	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00940000165309	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36
Neognathae	ANCESTRAL SPECIES	27	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000002873 #9	ENSGT00950000185997	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00940000165309	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36
Galloanserae	ANCESTRAL SPECIES	26	ENSGT00510000047967	ENSGT00940000155048	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303	ENSGT00390000010170.a.a #23	ENSGT00940000163880	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00940000165309	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36
Anatidae	ANCESTRAL SPECIES	41	ENSGT00510000047967	ENSGT00940000155048	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303	ENSGT00390000010170.a.a #23	ENSGT00940000163880	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00940000165309	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36
Pink-footed goose	MODERN SPECIES	91	PTPRG (ENSABRG00000001987)	C3orf14 (ENSABRG00000002287)	FEZF2 (ENSABRG00000002354)	ENSABRG00000002463	SYNPR (ENSABRG00000002616)	SNTN (ENSABRG00000002685)	THOC7 (ENSABRG00000002714) #9	ATXN7 (ENSABRG00000002852) #10	PSMD6 (ENSABRG00000002968) #11	PRICKLE2 (ENSABRG00000003016) #13	ADAMTS9 (ENSABRG00000003094) #14	MAGI1 (ENSABRG00000003972) #15	ENSABRG00000004110	SLC25A26 (ENSABRG00000004131) #17	LRIG1 (ENSABRG00000004189) #19	KBTBD8 (ENSABRG00000005059) #22	ENSABRG00000005112
Duck	MODERN SPECIES	4	PTPRG (ENSAPLG00000012378)	C3orf14 (ENSAPLG00000013146)	FEZF2 (ENSAPLG00000020979)	ENSAPLG00000002031	SYNPR (ENSAPLG00000003065)	SNTN (ENSAPLG00000003311)	THOC7 (ENSAPLG00000003317) #9	ATXN7 (ENSAPLG00000003397) #10	PSMD6 (ENSAPLG00000003464) #11	PRICKLE2 (ENSAPLG00000003962) #13	ADAMTS9 (ENSAPLG00000005973) #14	ENSAPLG00000027785	MAGI1 (ENSAPLG00000015151) #15	SLC25A26 (ENSAPLG00000015089) #17	LRIG1 (ENSAPLG00000014836) #19	KBTBD8 (ENSAPLG00000014724) #22	ENSAPLG00000014560	SUCLG2 (ENSAPLG00000014378) #23	ENSAPLG00000014295	TAFA4 (ENSAPLG00000014143) #25	EOGT (ENSAPLG00000013712) #26	TMF1 (ENSAPLG00000013459) #27	UBA3 (ENSAPLG00000013254) #28	ARL6IP5 (ENSAPLG00000017744) #29	LMOD3 (ENSAPLG00000013202) #30	FRMD4B (ENSAPLG00000012468) #31	MITF (ENSAPLG00000011965) #32	ENSAPLG00000011893	MDFIC2 (ENSAPLG00000023736) #33	FOXP1 (ENSAPLG00000011828) #34	EIF4E3 (ENSAPLG00000023114) #36
Phasianidae	ANCESTRAL SPECIES	16	ENSGT00510000047967	ENSGT00940000155048	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000163880	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00940000165309	ENSGT00730000111641 #33	ENSGT00940000159892 #34
Phasianidae_b	ANCESTRAL SPECIES	16	ENSGT00510000047967	ENSGT00940000155048	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00940000165309	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36
Turkey	MODERN SPECIES	5	CFAP20DC (ENSMGAG00000008832)	ENSMGAG00000021099	PTPRG (ENSMGAG00000008850)	C3orf14 (ENSMGAG00000008896)	ENSMGAG00000008911	SYNPR (ENSMGAG00000009030)	SNTN (ENSMGAG00000009047)	THOC7 (ENSMGAG00000009059) #9	ATXN7 (ENSMGAG00000009100) #10	PSMD6 (ENSMGAG00000009125) #11	PRICKLE2 (ENSMGAG00000009081) #13	ADAMTS9 (ENSMGAG00000009150) #14	MAGI1 (ENSMGAG00000009228) #15	SLC25A26 (ENSMGAG00000009255) #17	LRIG1 (ENSMGAG00000009269) #19	KBTBD8 (ENSMGAG00000022009) #22	ENSMGAG00000009302	SUCLG2 (ENSMGAG00000009310) #23	ENSMGAG00000009329	TAFA4 (ENSMGAG00000009332) #25	EOGT (ENSMGAG00000009335) #26	TMF1 (ENSMGAG00000009372) #27	UBA3 (ENSMGAG00000009393) #28	ARL6IP5 (ENSMGAG00000009453) #29	LMOD3 (ENSMGAG00000009459) #30	FRMD4B (ENSMGAG00000009466) #31	MITF (ENSMGAG00000009507) #32	ENSMGAG00000009539	MDFIC2 (ENSMGAG00000009545) #33	FOXP1 (ENSMGAG00000009549) #34	EIF4E3 (ENSMGAG00000009619) #36
Chicken	MODERN SPECIES	3	FHIT (ENSGALG00010021016)	PTPRG (ENSGALG00010021043)	C12H3orf14 (ENSGALG00010021052)	FEZF2 (ENSGALG00010021054)	ENSGALG00010021078	SYP (ENSGALG00010021113)	SNTN (ENSGALG00010021119)	THOC7 (ENSGALG00010020141) #9	ATXN7 (ENSGALG00010020152) #10	PSMD6 (ENSGALG00010020179) #11	PRICKLE2 (ENSGALG00010020194) #13	ADAMTS9 (ENSGALG00010020246) #14	MAGI1 (ENSGALG00010020282) #15	SLC25A26 (ENSGALG00010019297) #17	LRIG1 (ENSGALG00010019323) #19	KBTBD8 (ENSGALG00010019650) #22	ENSGALG00010019696	SUCLG2 (ENSGALG00010019767) #23	TAFA1 (ENSGALG00010019871)	TAFA4 (ENSGALG00010019938) #25	EOGT (ENSGALG00010020005) #26	TMF1 (ENSGALG00010020036) #27	UBA3 (ENSGALG00010020061) #28	ARL6IP5 (ENSGALG00010020070) #29	LMOD3 (ENSGALG00010020088) #30	FRMD4B (ENSGALG00010020127) #31	MITF (ENSGALG00010022062) #32	ENSGALG00010022077	MDFIC2 (ENSGALG00010022083) #33	FOXP1 (ENSGALG00010022171) #34	EIF4E3 (ENSGALG00010022219) #36
Japanese quail	MODERN SPECIES	3	ENSCJPG00005016819	PTPRG (ENSCJPG00005016823)	C3orf14 (ENSCJPG00005016824)	FEZF2 (ENSCJPG00005016825)	ENSCJPG00005016828	SYNPR (ENSCJPG00005018030)	SNTN (ENSCJPG00005018031)	THOC7 (ENSCJPG00005018032) #9	ATXN7 (ENSCJPG00005018034) #10	PSMD6 (ENSCJPG00005018035) #11	PRICKLE2 (ENSCJPG00005018037) #13	ADAMTS9 (ENSCJPG00005018038) #14	MAGI1 (ENSCJPG00005018045) #15	SLC25A26 (ENSCJPG00005018055) #17	LRIG1 (ENSCJPG00005018060) #19	KBTBD8 (ENSCJPG00005018067) #22	ENSCJPG00005018069	SUCLG2 (ENSCJPG00005018075) #23	ENSCJPG00005018085	ENSCJPG00005018090	TAFA4 (ENSCJPG00005018097) #25	EOGT (ENSCJPG00005018101) #26	TMF1 (ENSCJPG00005018103) #27	UBA3 (ENSCJPG00005018109) #28	ARL6IP5 (ENSCJPG00005018138) #29	LMOD3 (ENSCJPG00005018140) #30	FRMD4B (ENSCJPG00005018142) #31	MITF (ENSCJPG00005018152) #32	ENSCJPG00005018160	ENSCJPG00005018162	MDFIC2 (ENSCJPG00005018163) #33
Neognathae_b	ANCESTRAL SPECIES	18	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000002873 #9	ENSGT00950000185997	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00940000165309	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36
Neognathae_c	ANCESTRAL SPECIES	21	ENSGT00940000163977	ENSGT00940000155048	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Golden eagle	MODERN SPECIES	12	ENSACCG00020013179	PTPRG (ENSACCG00020014073)	C3orf14 (ENSACCG00020014772)	FEZF2 (ENSACCG00020014787)	ENSACCG00020016282	SYNPR (ENSACCG00020016617)	SNTN (ENSACCG00020016624)	THOC7 (ENSACCG00020016628) #9	ATXN7 (ENSACCG00020016632) #10	PSMD6 (ENSACCG00020016638) #11	PRICKLE2 (ENSACCG00020016643) #13	ADAMTS9 (ENSACCG00020016650) #14	MAGI1 (ENSACCG00020016667) #15	SLC25A26 (ENSACCG00020016695) #17	LRIG1 (ENSACCG00020016703) #19	KBTBD8 (ENSACCG00020016709) #22	ENSACCG00020016712	SUCLG2 (ENSACCG00020008064) #23	TAFA1 (ENSACCG00020008077)	TAFA4 (ENSACCG00020008089) #25	EOGT (ENSACCG00020008102) #26	TMF1 (ENSACCG00020008119) #27	UBA3 (ENSACCG00020008140) #28	ARL6IP5 (ENSACCG00020008195) #29	LMOD3 (ENSACCG00020008206) #30	FRMD4B (ENSACCG00020008222) #31	MITF (ENSACCG00020008257) #32	MDFIC2 (ENSACCG00020008280) #33	FOXP1 (ENSACCG00020008422) #34	EIF4E3 (ENSACCG00020008519) #36	GPR27 (ENSACCG00020008536) #37
Kakapo	MODERN SPECIES	3	ENSSHBG00005016057	PTPRG (ENSSHBG00005016050)	C3orf14 (ENSSHBG00005016035)	FEZF2 (ENSSHBG00005016024)	ENSSHBG00005015047	SYNPR (ENSSHBG00005014888)	SNTN (ENSSHBG00005014875)	THOC7 (ENSSHBG00005014867) #9	ATXN7 (ENSSHBG00005014850) #10	PSMD6 (ENSSHBG00005014829) #11	PRICKLE2 (ENSSHBG00005014821) #13	ADAMTS9 (ENSSHBG00005014460) #14	MAGI1 (ENSSHBG00005014282) #15	SLC25A26 (ENSSHBG00005014260) #17	LRIG1 (ENSSHBG00005014201) #19	KBTBD8 (ENSSHBG00005014161) #22	ENSSHBG00005014152	SUCLG2 (ENSSHBG00005011649) #23	TAFA4 (ENSSHBG00005011455) #25	EOGT (ENSSHBG00005011329) #26	TMF1 (ENSSHBG00005011258) #27	UBA3 (ENSSHBG00005011214) #28	ARL6IP5 (ENSSHBG00005011174) #29	LMOD3 (ENSSHBG00005011123) #30	FRMD4B (ENSSHBG00005011065) #31	ENSSHBG00005011012	ENSSHBG00005010991	ENSSHBG00005010965	MDFIC2 (ENSSHBG00005010924) #33	FOXP1 (ENSSHBG00005010885) #34	EIF4E3 (ENSSHBG00005010834) #36
Passeriformes	ANCESTRAL SPECIES	16	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000002873 #9	ENSGT00950000185997	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00940000165309	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36
Passeriformes_d	ANCESTRAL SPECIES	16	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000002873 #9	ENSGT00950000185997	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00940000165309	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36
Flycatcher	MODERN SPECIES	3	PTPRG (ENSFALG00000013214)	C3orf14 (ENSFALG00000013220)	FEZF2 (ENSFALG00000013225)	ENSFALG00000013227	SYNPR (ENSFALG00000013235)	ENSFALG00000024803	THOC7 (ENSFALG00000013245) #9	ATXN7 (ENSFALG00000013254) #10	PSMD6 (ENSFALG00000013261) #11	PRICKLE2 (ENSFALG00000013263) #13	ADAMTS9 (ENSFALG00000013265) #14	MAGI1 (ENSFALG00000013283) #15	ENSFALG00000023566	SLC25A26 (ENSFALG00000013315) #17	LRIG1 (ENSFALG00000013324) #19	KBTBD8 (ENSFALG00000013332) #22	ENSFALG00000013341	SUCLG2 (ENSFALG00000013349) #23	TAFA1 (ENSFALG00000013355)	TAFA4 (ENSFALG00000013356) #25	EOGT (ENSFALG00000026269) #26	TMF1 (ENSFALG00000013361) #27	UBA3 (ENSFALG00000013365) #28	ARL6IP5 (ENSFALG00000028538) #29	LMOD3 (ENSFALG00000013370) #30	FRMD4B (ENSFALG00000013372) #31	MITF (ENSFALG00000026731) #32	ENSFALG00000013396	MDFIC2 (ENSFALG00000013397) #33	FOXP1 (ENSFALG00000013404) #34	EIF4E3 (ENSFALG00000028480) #36
Passeriformes_g	ANCESTRAL SPECIES	16	ENSGT00940000155048	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000002873 #9	ENSGT00950000185997	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00940000165309	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36
Passeroidea	ANCESTRAL SPECIES	16	ENSGT00940000155048	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000002873 #9	ENSGT00950000185997	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00940000165309	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36
Common canary	MODERN SPECIES	15	PTPRG (ENSSCAG00000006226)	C3orf14 (ENSSCAG00000006240)	FEZF2 (ENSSCAG00000006244)	ENSSCAG00000006382	SYNPR (ENSSCAG00000007215)	SNTN (ENSSCAG00000007220)	THOC7 (ENSSCAG00000007223) #9	ENSSCAG00000007232	ATXN7 (ENSSCAG00000007233) #10	PSMD6 (ENSSCAG00000007252) #11	PRICKLE2 (ENSSCAG00000007292) #13	ADAMTS9 (ENSSCAG00000007307) #14	MAGI1 (ENSSCAG00000007368) #15	SLC25A26 (ENSSCAG00000007630) #17	LRIG1 (ENSSCAG00000007642) #19	KBTBD8 (ENSSCAG00000007691) #22	ENSSCAG00000007694	SUCLG2 (ENSSCAG00000007715) #23	TAFA1 (ENSSCAG00000007834)	TAFA4 (ENSSCAG00000007848) #25	EOGT (ENSSCAG00000007882) #26	TMF1 (ENSSCAG00000007954) #27	UBA3 (ENSSCAG00000007959) #28	ARL6IP5 (ENSSCAG00000007962) #29	LMOD3 (ENSSCAG00000007965) #30	FRMD4B (ENSSCAG00000007970) #31	MITF (ENSSCAG00000008001) #32	ENSSCAG00000008018	ENSSCAG00000008022	MDFIC2 (ENSSCAG00000008028) #33	FOXP1 (ENSSCAG00000008063) #34
Zebra finch	MODERN SPECIES	3	ENSTGUG00000026510	PTPRG (ENSTGUG00000009280)	FEZF2 (ENSTGUG00000021940)	C3orf14 (ENSTGUG00000026142)	ENSTGUG00000009352	SYNPR (ENSTGUG00000018356)	SNTN (ENSTGUG00000009426)	THOC7 (ENSTGUG00000009431) #9	ATXN7 (ENSTGUG00000009416) #10	PSMD6 (ENSTGUG00000009442) #11	PRICKLE2 (ENSTGUG00000009461) #13	ADAMTS9 (ENSTGUG00000009483) #14	MAGI1 (ENSTGUG00000009560) #15	SLC25A26 (ENSTGUG00000009590) #17	LRIG1 (ENSTGUG00000009604) #19	KBTBD8 (ENSTGUG00000009627) #22	ENSTGUG00000009630	SUCLG2 (ENSTGUG00000009643) #23	TAFA1 (ENSTGUG00000009669)	TAFA4 (ENSTGUG00000024581) #25	EOGT (ENSTGUG00000009683) #26	TMF1 (ENSTGUG00000009717) #27	UBA3 (ENSTGUG00000009733) #28	ARL6IP5 (ENSTGUG00000009784) #29	LMOD3 (ENSTGUG00000009788) #30	FRMD4B (ENSTGUG00000009791) #31	MITF (ENSTGUG00000009847) #32	ENSTGUG00000009864	MDFIC2 (ENSTGUG00000022276) #33	FOXP1 (ENSTGUG00000009872) #34	EIF4E3 (ENSTGUG00000009923) #36
Medium ground finch	MODERN SPECIES	20	CFAP20DC (ENSGFOG00000004941)	ENSGFOG00000009016	PTPRG (ENSGFOG00000008759)	C3orf14 (ENSGFOG00000008730)	ENSGFOG00000006121	SYNPR (ENSGFOG00000006020)	SNTN (ENSGFOG00000006009)	THOC7 (ENSGFOG00000006002) #9	ATXN7 (ENSGFOG00000005996) #10	PSMD6 (ENSGFOG00000005991) #11	PRICKLE2 (ENSGFOG00000005985) #13	ADAMTS9 (ENSGFOG00000005699) #14	MAGI1 (ENSGFOG00000005601) #15	SLC25A26 (ENSGFOG00000005568) #17	LRIG1 (ENSGFOG00000005456) #19	KBTBD8 (ENSGFOG00000005432) #22	ENSGFOG00000005424	SUCLG2 (ENSGFOG00000005343) #23	TAFA1 (ENSGFOG00000005327)	TAFA4 (ENSGFOG00000005317) #25	EOGT (ENSGFOG00000005298) #26	TMF1 (ENSGFOG00000004844) #27	UBA3 (ENSGFOG00000004801) #28	ARL6IP5 (ENSGFOG00000004791) #29	LMOD3 (ENSGFOG00000004784) #30	FRMD4B (ENSGFOG00000004734) #31	MITF (ENSGFOG00000004714) #32	ENSGFOG00000004688	ENSGFOG00000004645	MDFIC2 (ENSGFOG00000004631) #33	FOXP1 (ENSGFOG00000004570) #34
Great tit	MODERN SPECIES	3	ENSPMJG00000005008	PTPRG (ENSPMJG00000005009)	C3orf14 (ENSPMJG00000005013)	FEZF2 (ENSPMJG00000005019)	ENSPMJG00000005031	SYNPR (ENSPMJG00000005050)	SNTN (ENSPMJG00000005070)	THOC7 (ENSPMJG00000005073) #9	ATXN7 (ENSPMJG00000005075) #10	PSMD6 (ENSPMJG00000005080) #11	PRICKLE2 (ENSPMJG00000005105) #13	ADAMTS9 (ENSPMJG00000005116) #14	MAGI1 (ENSPMJG00000005138) #15	SLC25A26 (ENSPMJG00000005179) #17	LRIG1 (ENSPMJG00000005189) #19	KBTBD8 (ENSPMJG00000005200) #22	ENSPMJG00000005202	SUCLG2 (ENSPMJG00000005212) #23	TAFA1 (ENSPMJG00000005221)	TAFA4 (ENSPMJG00000005234) #25	EOGT (ENSPMJG00000005244) #26	TMF1 (ENSPMJG00000005253) #27	UBA3 (ENSPMJG00000005263) #28	ARL6IP5 (ENSPMJG00000005544) #29	LMOD3 (ENSPMJG00000005547) #30	FRMD4B (ENSPMJG00000005549) #31	MITF (ENSPMJG00000005557) #32	ENSPMJG00000005560	MDFIC2 (ENSPMJG00000005566) #33	FOXP1 (ENSPMJG00000005573) #34	EIF4E3 (ENSPMJG00000005596) #36
African ostrich	MODERN SPECIES	756			PTPRG (ENSSCUG00000010481)	C3orf14 (ENSSCUG00000010488)	ENSSCUG00000010504	SYNPR (ENSSCUG00000010579)	SNTN (ENSSCUG00000010581)	THOC7 (ENSSCUG00000010585) #9	ATXN7 (ENSSCUG00000010590) #10	PSMD6 (ENSSCUG00000010593) #11	PRICKLE2 (ENSSCUG00000010599) #13	ADAMTS9 (ENSSCUG00000010695) #14	MAGI1 (ENSSCUG00000010757) #15	SLC25A26 (ENSSCUG00000010771) #17	LRIG1 (ENSSCUG00000010808) #19	KBTBD8 (ENSSCUG00000010827) #22	ENSSCUG00000010829	SUCLG2 (ENSSCUG00000010832) #23	TAFA1 (ENSSCUG00000010835)	TAFA4 (ENSSCUG00000010838) #25	EOGT (ENSSCUG00000010841) #26	TMF1 (ENSSCUG00000010866) #27	UBA3 (ENSSCUG00000010888) #28	ENSSCUG00000010895
Australian saltwater crocodile	MODERN SPECIES	37	PTPRG (ENSCPRG00005016446)	C3orf14 (ENSCPRG00005016434)	ENSCPRG00005016336	SYNPR (ENSCPRG00005016305)	SNTN (ENSCPRG00005016304)	THOC7 (ENSCPRG00005016300) #9	ATXN7 (ENSCPRG00005016288) #10	PSMD6 (ENSCPRG00005016279) #11	ENSCPRG00005016274	PRICKLE2 (ENSCPRG00005016258) #13	ADAMTS9 (ENSCPRG00005016132) #14	MAGI1 (ENSCPRG00005015934) #15	ENSCPRG00005015898	SLC25A26 (ENSCPRG00005015895) #17	LRIG1 (ENSCPRG00005015894) #19	KBTBD8 (ENSCPRG00005015890) #22	ENSCPRG00005015888	SUCLG2 (ENSCPRG00005015887) #23	ENSCPRG00005015885	ENSCPRG00005015882	TAFA4 (ENSCPRG00005015878) #25	EOGT (ENSCPRG00005015876) #26	TMF1 (ENSCPRG00005015874) #27	UBA3 (ENSCPRG00005015868) #28	ARL6IP5 (ENSCPRG00005015865) #29	LMOD3 (ENSCPRG00005015864) #30	FRMD4B (ENSCPRG00005015846) #31	MITF (ENSCPRG00005015838) #32	MDFIC2 (ENSCPRG00005015832) #33	FOXP1 (ENSCPRG00005015769) #34	EIF4E3 (ENSCPRG00005015751) #36
Cryptodira	ANCESTRAL SPECIES	17	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00940000173126	ENSGT00390000002873 #9	ENSGT00950000185997	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303	ENSGT00390000010170.a.a #23	ENSGT00940000163880	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00390000011238	ENSGT00940000165309	ENSGT00730000111641 #33	ENSGT00940000159892 #34
Testudinoidea	ANCESTRAL SPECIES	2	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00940000173126	ENSGT00390000002873 #9	ENSGT00950000185997	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303	ENSGT00390000010170.a.a #23	ENSGT00940000163880	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00940000165309	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00650000094763 #35
Emydidae	ANCESTRAL SPECIES	13	ENSGT00940000155048.w	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303	ENSGT00390000010170.a.a #23	ENSGT00940000163880	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00940000165309	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36
Three-toed box turtle	MODERN SPECIES	33	C3orf14 (ENSTMTG00000014098)	FEZF2 (ENSTMTG00000014109)	ENSTMTG00000014120	ENSTMTG00000014140	SYNPR (ENSTMTG00000014199)	SNTN (ENSTMTG00000014239)	THOC7 (ENSTMTG00000014251) #9	ATXN7 (ENSTMTG00000014272) #10	PSMD6 (ENSTMTG00000014295) #11	PRICKLE2 (ENSTMTG00000014312) #13	ADAMTS9 (ENSTMTG00000014575) #14	MAGI1 (ENSTMTG00000016802) #15	ENSTMTG00000016884	SLC25A26 (ENSTMTG00000016891) #17	LRIG1 (ENSTMTG00000016908) #19	KBTBD8 (ENSTMTG00000016948) #22	ENSTMTG00000016963	SUCLG2 (ENSTMTG00000016973) #23	ENSTMTG00000016997	TAFA4 (ENSTMTG00000017005) #25	EOGT (ENSTMTG00000017077) #26	TMF1 (ENSTMTG00000017529) #27	UBA3 (ENSTMTG00000017592) #28	ARL6IP5 (ENSTMTG00000017618) #29	ENSTMTG00000017624	LMOD3 (ENSTMTG00000017636) #30	FRMD4B (ENSTMTG00000017669) #31	MITF (ENSTMTG00000017748) #32	ENSTMTG00000017806	ENSTMTG00000017820	MDFIC2 (ENSTMTG00000017833) #33
painted turtle	MODERN SPECIES	2383	FEZF2 (ENSCPBG00000025918)	ENSCPBG00000025971	SYNPR (ENSCPBG00000026830)	SNTN (ENSCPBG00000026833)	THOC7 (ENSCPBG00000026834) #9	ENSCPBG00000026835	ATXN7 (ENSCPBG00000026836) #10	PSMD6 (ENSCPBG00000026839) #11	PRICKLE2 (ENSCPBG00000026844) #13	ENSCPBG00000026851 #14	ENSCPBG00000026862 #14	MAGI1 (ENSCPBG00000026871) #15	ENSCPBG00000026876	SLC25A26 (ENSCPBG00000026877) #17	LRIG1 (ENSCPBG00000026879) #19	KBTBD8 (ENSCPBG00000026884) #22	ENSCPBG00000026885	SUCLG2 (ENSCPBG00000026891) #23	ENSCPBG00000026898	ENSCPBG00000026901	ENSCPBG00000000182	TAFA4 (ENSCPBG00000000202) #25	EOGT (ENSCPBG00000000226) #26	TMF1 (ENSCPBG00000000268) #27	UBA3 (ENSCPBG00000000357) #28	ARL6IP5 (ENSCPBG00000000384) #29	LMOD3 (ENSCPBG00000000394) #30	FRMD4B (ENSCPBG00000000426) #31	MITF (ENSCPBG00000000513) #32	ENSCPBG00000000573	ENSCPBG00000000607
Testudinidae	ANCESTRAL SPECIES	5	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00940000173126	ENSGT00390000002873 #9	ENSGT00950000185997	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303	ENSGT00390000010170.a.a #23	ENSGT00940000163880	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00940000165309	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00650000094763 #35
Goode s thornscrub tortoise	MODERN SPECIES	21	FEZF2 (ENSGEVG00005007428)	ENSGEVG00005007389	ENSGEVG00005007302	SYNPR (ENSGEVG00005007208)	ENSGEVG00005007182	ENSGEVG00005007158	THOC7 (ENSGEVG00005007138) #9	ATXN7 (ENSGEVG00005007114) #10	PSMD6 (ENSGEVG00005007090) #11	PRICKLE2 (ENSGEVG00005007020) #13	ADAMTS9 (ENSGEVG00005006238) #14	MAGI1 (ENSGEVG00005004948) #15	ENSGEVG00005004516	SLC25A26 (ENSGEVG00005004455) #17	LRIG1 (ENSGEVG00005004250) #19	KBTBD8 (ENSGEVG00005004176) #22	ENSGEVG00005004158	SUCLG2 (ENSGEVG00005004135) #23	ENSGEVG00005004121	TAFA4 (ENSGEVG00005004105) #25	EOGT (ENSGEVG00005004061) #26	TMF1 (ENSGEVG00005004020) #27	UBA3 (ENSGEVG00005004001) #28	ARL6IP5 (ENSGEVG00005019026) #29	LMOD3 (ENSGEVG00005019002) #30	FRMD4B (ENSGEVG00005018987) #31	MITF (ENSGEVG00005018917) #32	ENSGEVG00005018889	MDFIC2 (ENSGEVG00005018869) #33	FOXP1 (ENSGEVG00005018847) #34	ENSGEVG00005018834 #35
Abingdon island giant tortoise	MODERN SPECIES	440														SLC25A26 (ENSCABG00000020435) #17	LRIG1 (ENSCABG00000020462) #19	KBTBD8 (ENSCABG00000020464) #22	ENSCABG00000020466	SUCLG2 (ENSCABG00000020470) #23
Chinese turtle	MODERN SPECIES	839	TECPR2 (ENSPSIG00000016695)	CINP (ENSPSIG00000016922)	ENSPSIG00000017093	MOK (ENSPSIG00000017309)	WDR20 (ENSPSIG00000017674)	HSP90AA1 (ENSPSIG00000017943)	DYNC1H1 (ENSPSIG00000006748)	PPP2R5C (ENSPSIG00000012083)	ENSPSIG00000001467	ENSPSIG00000001483	ENSPSIG00000001502	DLK1 (ENSPSIG00000013018)	ENSPSIG00000000073	SLC25A26 (ENSPSIG00000013022) #17	LRIG1 (ENSPSIG00000013027) #19	KBTBD8 (ENSPSIG00000013563) #22	ENSPSIG00000013570	SUCLG2 (ENSPSIG00000013610) #23	ENSPSIG00000013999	ENSPSIG00000000074	TAFA4 (ENSPSIG00000014008) #25	EOGT (ENSPSIG00000014016) #26	TMF1 (ENSPSIG00000015293) #27	UBA3 (ENSPSIG00000015303) #28	ARL6IP5 (ENSPSIG00000016018) #29	LMOD3 (ENSPSIG00000016985) #30	FRMD4B (ENSPSIG00000017130) #31	MITF (ENSPSIG00000012120) #32	ENSPSIG00000006822	ENSPSIG00000007253	MDFIC2 (ENSPSIG00000008400) #33
Lepidosauria	ANCESTRAL SPECIES	14	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00940000173126	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303	ENSGT00390000010170.a.a #23	ENSGT00940000163880	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00940000165309	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36
Episquamata	ANCESTRAL SPECIES	4	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00940000173126	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303	ENSGT00390000010170.a.a #23	ENSGT00940000163880	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00940000165309	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36
Laterata	ANCESTRAL SPECIES	1	ENSGT00940000155048	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303	ENSGT00390000010170.a.a #23	ENSGT00940000163880	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00940000165309	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36
Common wall lizard	MODERN SPECIES	10	C3orf49 (ENSPMRG00000013360) #8	ENSPMRG00000013351 #9	ATXN7 (ENSPMRG00000013343) #10	PSMD6 (ENSPMRG00000013339) #11	PRICKLE2 (ENSPMRG00000013321) #13	ADAMTS9 (ENSPMRG00000013103) #14	ENSPMRG00000013047	MAGI1 (ENSPMRG00000012579) #15	ENSPMRG00000012519	ENSPMRG00000012518	ENSPMRG00000012517	SLC25A26 (ENSPMRG00000015542) #17	ENSPMRG00000015538	LRIG1 (ENSPMRG00000015530) #19	ENSPMRG00000015524	KBTBD8 (ENSPMRG00000015522) #22	ENSPMRG00000015518	SUCLG2 (ENSPMRG00000015512) #23	ENSPMRG00000015505	TAFA4 (ENSPMRG00000015501) #25	EOGT (ENSPMRG00000015468) #26	TMF1 (ENSPMRG00000015455) #27	UBA3 (ENSPMRG00000015448) #28	ARL6IP5 (ENSPMRG00000015419) #29	LMOD3 (ENSPMRG00000015415) #30	FRMD4B (ENSPMRG00000015388) #31	ENSPMRG00000015381	MITF (ENSPMRG00000015352) #32	ENSPMRG00000015341	MDFIC2 (ENSPMRG00000015336) #33	FOXP1 (ENSPMRG00000015325) #34
Argentine black and white tegu	MODERN SPECIES	30	PTPRG (ENSSMRG00000017361)	C3orf14 (ENSSMRG00000017365)	FEZF2 (ENSSMRG00000017366)	ENSSMRG00000017371	SYNPR (ENSSMRG00000017386)	SNTN (ENSSMRG00000017390)	THOC7 (ENSSMRG00000017403) #9	ATXN7 (ENSSMRG00000017404) #10	PSMD6 (ENSSMRG00000017409) #11	PRICKLE2 (ENSSMRG00000000017) #13	ADAMTS9 (ENSSMRG00000000159) #14	MAGI1 (ENSSMRG00000000667) #15	ENSSMRG00000000733	SLC25A26 (ENSSMRG00000000770) #17	LRIG1 (ENSSMRG00000000805) #19	KBTBD8 (ENSSMRG00000000879) #22	ENSSMRG00000000887	SUCLG2 (ENSSMRG00000000921) #23	ENSSMRG00000000981	ENSSMRG00000000996	TAFA4 (ENSSMRG00000001030) #25	EOGT (ENSSMRG00000001044) #26	TMF1 (ENSSMRG00000002507) #27	UBA3 (ENSSMRG00000002519) #28	ARL6IP5 (ENSSMRG00000002565) #29	LMOD3 (ENSSMRG00000002566) #30	FRMD4B (ENSSMRG00000002580) #31	MITF (ENSSMRG00000002637) #32	MDFIC2 (ENSSMRG00000002664) #33	FOXP1 (ENSSMRG00000002823) #34	ENSSMRG00000002882
Toxicofera	ANCESTRAL SPECIES	3	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00940000173126	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303	ENSGT00390000010170.a.a #23	ENSGT00940000163880	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Elapidae	ANCESTRAL SPECIES	2	ENSGT00940000155048	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303	ENSGT00390000010170.a.a #23	ENSGT00940000163880	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Elapidae_a	ANCESTRAL SPECIES	8	ENSGT00940000155048	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303	ENSGT00390000010170.a.a #23	ENSGT00940000163880	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Blue-lipped sea krait	MODERN SPECIES	287																KBTBD8 (ENSLLTG00000003294) #22
Acanthophiinae	ANCESTRAL SPECIES	10	ENSGT00940000155048	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00940000166512	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303	ENSGT00390000010170.a.a #23	ENSGT00940000163880	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37
Eastern brown snake	MODERN SPECIES	3	C3orf14 (ENSPTXG00000002472)	FEZF2 (ENSPTXG00000002474)	ENSPTXG00000002475	ENSPTXG00000002477	SYNPR (ENSPTXG00000002481)	SNTN (ENSPTXG00000002496)	THOC7 (ENSPTXG00000002499) #9	ATXN7 (ENSPTXG00000002502) #10	PSMD6 (ENSPTXG00000002506) #11	PRICKLE2 (ENSPTXG00000002510) #13	ENSPTXG00000002518 #14	ENSPTXG00000002527 #14	MAGI1 (ENSPTXG00000002562) #15	SLC25A26 (ENSPTXG00000002815) #17	LRIG1 (ENSPTXG00000002859) #19	KBTBD8 (ENSPTXG00000002860) #22	ENSPTXG00000002861	SUCLG2 (ENSPTXG00000002863) #23	ENSPTXG00000002864	TAFA4 (ENSPTXG00000002865) #25	EOGT (ENSPTXG00000002866) #26	TMF1 (ENSPTXG00000002867) #27	UBA3 (ENSPTXG00000002868) #28	ARL6IP5 (ENSPTXG00000002869) #29	LMOD3 (ENSPTXG00000002870) #30	FRMD4B (ENSPTXG00000002871) #31	MITF (ENSPTXG00000002872) #32	MDFIC2 (ENSPTXG00000002874) #33	FOXP1 (ENSPTXG00000002890) #34	EIF4E3 (ENSPTXG00000004035) #36	GPR27 (ENSPTXG00000004036) #37
Mainland tiger snake	MODERN SPECIES	2	FEZF2 (ENSNSUG00000007753)	ENSNSUG00000007664	ENSNSUG00000007659	SYNPR (ENSNSUG00000007657)	SNTN (ENSNSUG00000007655)	THOC7 (ENSNSUG00000007653) #9	ENSNSUG00000007652 #10	ENSNSUG00000007649 #10	PSMD6 (ENSNSUG00000007645) #11	PRICKLE2 (ENSNSUG00000007643) #13	ADAMTS9 (ENSNSUG00000007617) #14	MAGI1 (ENSNSUG00000007343) #15	ENSNSUG00000007339	SLC25A26 (ENSNSUG00000007291) #17	LRIG1 (ENSNSUG00000007277) #19	KBTBD8 (ENSNSUG00000007230) #22	ENSNSUG00000007229	SUCLG2 (ENSNSUG00000007228) #23	ENSNSUG00000007227	TAFA4 (ENSNSUG00000007226) #25	EOGT (ENSNSUG00000007219) #26	TMF1 (ENSNSUG00000007216) #27	UBA3 (ENSNSUG00000007215) #28	ENSNSUG00000007214	ARL6IP5 (ENSNSUG00000007213) #29	LMOD3 (ENSNSUG00000007212) #30	FRMD4B (ENSNSUG00000007211) #31	MITF (ENSNSUG00000007126) #32	FOXP1 (ENSNSUG00000007011) #34	EIF4E3 (ENSNSUG00000007010) #36	GPR27 (ENSNSUG00000007008) #37
Indian cobra	MODERN SPECIES	1	PTPRG (ENSNNAG00000003369)	C3orf14 (ENSNNAG00000003478)	FEZF2 (ENSNNAG00000003488)	ENSNNAG00000003563	SYNPR (ENSNNAG00000004217)	SNTN (ENSNNAG00000004265)	THOC7 (ENSNNAG00000004290) #9	ATXN7 (ENSNNAG00000004394) #10	PSMD6 (ENSNNAG00000004451) #11	PRICKLE2 (ENSNNAG00000004484) #13	ADAMTS9 (ENSNNAG00000004589) #14	MAGI1 (ENSNNAG00000004958) #15	ENSNNAG00000005526	SLC25A26 (ENSNNAG00000005554) #17	ENSNNAG00000005679 #19	KBTBD8 (ENSNNAG00000005697) #22	ENSNNAG00000005715	SUCLG2 (ENSNNAG00000005733) #23	ENSNNAG00000005763	TAFA4 (ENSNNAG00000005772) #25	EOGT (ENSNNAG00000005800) #26	TMF1 (ENSNNAG00000005900) #27	UBA3 (ENSNNAG00000006386) #28	ARL6IP5 (ENSNNAG00000006448) #29	LMOD3 (ENSNNAG00000006462) #30	FRMD4B (ENSNNAG00000006495) #31	ENSNNAG00000000263	MITF (ENSNNAG00000000297) #32	MDFIC2 (ENSNNAG00000000344) #33	FOXP1 (ENSNNAG00000000627) #34	EIF4E3 (ENSNNAG00000001669) #36
Lizard	MODERN SPECIES	1	CFAP20DC (ENSACAG00000011335)	ENSACAG00000036917	ENSACAG00000042705	ENSACAG00000044057	ENSACAG00000039580	ENSACAG00000036364	ENSACAG00000009205	ENSACAG00000038848	ENSACAG00000038408	ENSACAG00000040654	ENSACAG00000041637	ENSACAG00000038697	SLC25A26 (ENSACAG00000002472) #17	ENSACAG00000039409	LRIG1 (ENSACAG00000002482) #19	KBTBD8 (ENSACAG00000015104) #22	ENSACAG00000015111	SUCLG2 (ENSACAG00000015144) #23	ENSACAG00000038998	ENSACAG00000040759	ENSACAG00000039146	ENSACAG00000041722	ENSACAG00000036765	ENSACAG00000045320	ENSACAG00000036987	ENSACAG00000035340	ENSACAG00000044038	TAFA4 (ENSACAG00000029595) #25	EOGT (ENSACAG00000015231) #26	TMF1 (ENSACAG00000015244) #27	UBA3 (ENSACAG00000015287) #28
tuatara	MODERN SPECIES	839				MDFIC2 (ENSSPUG00000012307) #33	ENSSPUG00000012252	ENSSPUG00000012211 #32	ENSSPUG00000012190 #32	FRMD4B (ENSSPUG00000012173) #31	ARL6IP5 (ENSSPUG00000012126) #29	UBA3 (ENSSPUG00000012110) #28	TMF1 (ENSSPUG00000012051) #27	EOGT (ENSSPUG00000012017) #26	TAFA4 (ENSSPUG00000011995) #25	ENSSPUG00000011992	SUCLG2 (ENSSPUG00000011973) #23	KBTBD8 (ENSSPUG00000011960) #22	ENSSPUG00000011940	LRIG1 (ENSSPUG00000011880) #19	SLC25A26 (ENSSPUG00000011849) #17	MAGI1 (ENSSPUG00000011816) #15	ADAMTS9 (ENSSPUG00000011629) #14	PRICKLE2 (ENSSPUG00000011565) #13	PSMD6 (ENSSPUG00000011548) #11	ATXN7 (ENSSPUG00000011533) #10	ENSSPUG00000011528 #10	THOC7 (ENSSPUG00000011505) #9	SNTN (ENSSPUG00000011498)	SYNPR (ENSSPUG00000011487)	ENSSPUG00000011479	ENSSPUG00000011473	ENSSPUG00000011469
Anura	ANCESTRAL SPECIES	52	ENSGT00590000083094.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00980000202009	ENSGT01010000229997	ENSGT00940000164126 #7	ENSGT00390000007318 #8	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00940000165309	ENSGT00730000111641 #33	ENSGT00940000159892 #34	ENSGT00940000155865 #36
Frog	MODERN SPECIES	4	sntn (ENSXETG00000047790)	c3orf49 (ENSXETG00000006540) #8	thoc7 (ENSXETG00000006539) #9	mapk15 (ENSXETG00000006538) #10	psmd6 (ENSXETG00000006537) #11	prickle2 (ENSXETG00000006535) #13	ENSXETG00000042079	ENSXETG00000047063	adamts9 (ENSXETG00000013147) #14	ENSXETG00000049414	ENSXETG00000046573	magi1 (ENSXETG00000013130) #15	ENSXETG00000039347	slc25a26 (ENSXETG00000026858) #17	lrig1 (ENSXETG00000002515) #19	kbtbd8 (ENSXETG00000002518) #22	ENSXETG00000031632	suclg2 (ENSXETG00000002522) #23	tafa1 (ENSXETG00000047202)	ENSXETG00000048185	ENSXETG00000047023	tafa4 (ENSXETG00000035258) #25	eogt (ENSXETG00000016165) #26	ENSXETG00000042531	tmf1 (ENSXETG00000016166) #27	uba3 (ENSXETG00000016167) #28	ENSXETG00000040947	ENSXETG00000040721	arl6ip5 (ENSXETG00000036732) #29	lmod3 (ENSXETG00000043756) #30	frmd4b (ENSXETG00000016169) #31
Leishan spiny toad	MODERN SPECIES	11	C3orf49 (ENSLLEG00000017436) #8	ENSLLEG00000017334	ENSLLEG00000016992 #7	THOC7 (ENSLLEG00000016877) #9	ENSLLEG00000016808	ENSLLEG00000016767	ATXN7 (ENSLLEG00000016583) #10	PSMD6 (ENSLLEG00000016415) #11	PRICKLE2 (ENSLLEG00000016058) #13	ADAMTS9 (ENSLLEG00000015663) #14	ENSLLEG00000015559	ENSLLEG00000015534	MAGI1 (ENSLLEG00000014998) #15	SLC25A26 (ENSLLEG00000030302) #17	LRIG1 (ENSLLEG00000030257) #19	KBTBD8 (ENSLLEG00000030246) #22	ENSLLEG00000030238	ENSLLEG00000030227	ENSLLEG00000030217	ENSLLEG00000030210	SUCLG2 (ENSLLEG00000030179) #23	ENSLLEG00000030151	ENSLLEG00000030140	ENSLLEG00000030130	ENSLLEG00000030119	ENSLLEG00000030114	TAFA4 (ENSLLEG00000030074) #25	EOGT (ENSLLEG00000030010) #26	ENSLLEG00000029988	TMF1 (ENSLLEG00000029962) #27	UBA3 (ENSLLEG00000029864) #28
Coelacanth	MODERN SPECIES	976														SLC25A26 (ENSLACG00000003541) #17	LRIG1 (ENSLACG00000007055) #19	KBTBD8 (ENSLACG00000011196) #22	slc16a7 (ENSLACG00000011481)	SUCLG2 (ENSLACG00000013378) #23
Actinopterygii	ANCESTRAL SPECIES	14	ENSGT00940000160100	ENSGT00590000083094.a.a	ENSGT00940000153456.b.b	ENSGT01030000234637.b.d.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00940000173126	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00940000155865 #36	ENSGT00890000139436.A.a #37	ENSGT00390000013995.b.a
Reedfish	MODERN SPECIES	9	fancd2 (ENSECRG00000016630)	tex264a (ENSECRG00000016593)	grm2b (ENSECRG00000016569)	rrp9 (ENSECRG00000016528)	parp3 (ENSECRG00000016494)	parp3 (ENSECRG00000016445)	ENSECRG00000016428	cav3 (ENSECRG00000016409)	oxtrb (ENSECRG00000016399)	rad18 (ENSECRG00000016329)	SRGAP3 (ENSECRG00000016246)	thumpd3 (ENSECRG00000016210)	cntn4 (ENSECRG00000016063)	slc25a26 (ENSECRG00000016011) #17	LRIG1 (ENSECRG00000015968) #19	kbtbd8 (ENSECRG00000015950) #22	slc16a7 (ENSECRG00000015935)	suclg2 (ENSECRG00000015909) #23	ENSECRG00000015870	EOGT (ENSECRG00000015812) #26	tmf1 (ENSECRG00000015721) #27	magi1b (ENSECRG00000015537) #15	ADAMTS9 (ENSECRG00000015323) #14	prickle2b (ENSECRG00000015265) #13	psmd6 (ENSECRG00000015115) #11	ATXN7 (ENSECRG00000015061) #10	thoc7 (ENSECRG00000014809) #9	ENSECRG00000014753	SNTN (ENSECRG00000014716)	SYNPR (ENSECRG00000014669)	nampt2 (ENSECRG00000014617)
Neopterygii	ANCESTRAL SPECIES	59	ENSGT00940000153456.b.b	ENSGT01030000234637.b.d.a.a	ENSGT01030000234637.b.d.b	ENSGT00390000003322	ENSGT00940000173126	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a #13	ENSGT00940000156409 #14	ENSGT01030000234549.a.a.a.a.a.b.b.a	ENSGT00940000155820 #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303	ENSGT00390000010170.a.a #23	ENSGT00940000162607	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831 #28	ENSGT00390000008631.a #29	ENSGT00940000159731 #30	ENSGT01020000230354.A.a #31	ENSGT00940000156326 #32	ENSGT00730000111641 #33	ENSGT00390000011238	ENSGT00940000165309	ENSGT00940000165920.b
Osteoglossocephalai	ANCESTRAL SPECIES	85	ENSGT00940000160100	ENSGT00590000083094.a.a.c.a	ENSGT00940000153456.b.b	ENSGT01030000234637.b.d.a.a	ENSGT00940000173126	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT01030000234549.a.a.a.a.a.b.b.a	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00390000008631.a.o.a #29	ENSGT01020000230354.A.a.a #31	ENSGT00940000156326.a.b #32	ENSGT00940000165309	ENSGT00940000165920.b	ENSGT00940000155865.c.b #36	ENSGT00890000139436.A.a #37	ENSGT00940000167138
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	54	ENSGT00940000160100	ENSGT00590000083094.a.a.c.a	ENSGT00940000153456.b.b	ENSGT01030000234637.b.d.a.a.a	ENSGT00940000173126	ENSGT00390000002873 #9	ENSGT00940000157279.i #10	ENSGT00510000046608.B.s #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT01030000234549.a.a.a.a.a.b.b.a	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653.i #22	ENSGT00940000158653.j #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000159882 #25	ENSGT00940000159508.a	ENSGT00940000165407	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00390000008631.a.o.a #29	ENSGT01020000230354.A.a.a #31	ENSGT00940000156326.a.b #32	ENSGT00940000165309	ENSGT00730000111641 #33
P. kingsleyae	MODERN SPECIES	49	C3orf14 (ENSPKIG00000023719)	fezf2 (ENSPKIG00000023711)	ENSPKIG00000023698	ENSPKIG00000023548	nampt2 (ENSPKIG00000023445)	SYNPR (ENSPKIG00000023412)	ENSPKIG00000023394	thoc7 (ENSPKIG00000023365) #9	ATXN7 (ENSPKIG00000023335) #10	psmd6 (ENSPKIG00000023314) #11	prickle2b (ENSPKIG00000023283) #13	ADAMTS9 (ENSPKIG00000023235) #14	magi1b (ENSPKIG00000022734) #15	ENSPKIG00000022646 #17	LRIG1 (ENSPKIG00000022604) #19	kbtbd8 (ENSPKIG00000022588) #22	ENSPKIG00000022563	ENSPKIG00000022546	suclg2 (ENSPKIG00000022512) #23	TAFA1 (ENSPKIG00000022479)	TAFA4 (ENSPKIG00000022452) #25	EOGT (ENSPKIG00000022411) #26	tmf1 (ENSPKIG00000022370) #27	uba3 (ENSPKIG00000022293) #28	FRMD4B (ENSPKIG00000022214) #31	mitfa (ENSPKIG00000021897) #32	MDFIC2 (ENSPKIG00000021752) #33	foxp1b (ENSPKIG00000021659)	EIF4E3 (ENSPKIG00000021599) #36	gpr27 (ENSPKIG00000021581) #37	prok2 (ENSPKIG00000021574)
Asian bonytongue	MODERN SPECIES	11	cse1l (ENSSFOG00015021428)	PBRM1 (ENSSFOG00015021273)	gnl3 (ENSSFOG00015021228)	nek4 (ENSSFOG00015021215)	CAMK1 (ENSSFOG00015021178)	ENSSFOG00015021144	ENSSFOG00015031702	PTPRG (ENSSFOG00015021117)	ENSSFOG00015020968	SYNPR (ENSSFOG00015020917)	ATXN7 (ENSSFOG00015020910) #10	ENSSFOG00015025196	prickle2a (ENSSFOG00015029054) #13	MAGI1 (ENSSFOG00015020854) #15	ENSSFOG00015028939	kbtbd8 (ENSSFOG00015026870) #22	slc16a7 (ENSSFOG00015020802)	TAFA1 (ENSSFOG00015020770)	tafa4b (ENSSFOG00015020753)	UBA3 (ENSSFOG00015020666) #28	arl6ip5b (ENSSFOG00015026174) #29	LMOD3 (ENSSFOG00015020628) #30	ENSSFOG00015028695	MITF (ENSSFOG00015026327) #32	ENSSFOG00015020554	eif4e3 (ENSSFOG00015029780) #36	rybpb (ENSSFOG00015025246)	ppp4r2a (ENSSFOG00015020511)	PDZRN3 (ENSSFOG00015024646)	CNTN4 (ENSSFOG00015020161)	ENSSFOG00015019983
Osteoglossiformes	ANCESTRAL SPECIES	54	ENSGT00590000083094.a.a.c.a	ENSGT00940000153456.b.b	ENSGT01030000234637.b.d.a.a.a	ENSGT00940000173126	ENSGT00390000002873 #9	ENSGT00940000157279.i #10	ENSGT00510000046608.B.s #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT01030000234549.a.a.a.a.a.b.b.a	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653.i #22	ENSGT00940000158653.j #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000159882 #25	ENSGT00940000159508.a	ENSGT00940000165407	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00390000008631.a.o.a #29	ENSGT01020000230354.A.a.a #31	ENSGT00940000156326.a.b #32	ENSGT00940000165309	ENSGT00730000111641 #33	ENSGT00940000165920.b
Asian bonytongue	MODERN SPECIES	14	ENSSFOG00015018799	fezf2 (ENSSFOG00015018740)	ENSSFOG00015018359	nampt2 (ENSSFOG00015018243)	SYNPR (ENSSFOG00015018227)	thoc7 (ENSSFOG00015018204) #9	ATXN7 (ENSSFOG00015018162) #10	psmd6 (ENSSFOG00015018135) #11	slc2a9l1 (ENSSFOG00015018103)	prickle2b (ENSSFOG00015030418) #13	ADAMTS9 (ENSSFOG00015017953) #14	rho (ENSSFOG00015017939)	magi1b (ENSSFOG00015017375) #15	slc25a26 (ENSSFOG00015017281) #17	LRIG1 (ENSSFOG00015017174) #19	kbtbd8 (ENSSFOG00015032441) #22	ENSSFOG00015017078	suclg2 (ENSSFOG00015017035) #23	TAFA1 (ENSSFOG00015017007)	tafa4b (ENSSFOG00015016988)	EOGT (ENSSFOG00015016943) #26	tmf1 (ENSSFOG00015016904) #27	uba3 (ENSSFOG00015016867) #28	arl6ip5a (ENSSFOG00015025753) #29	FRMD4B (ENSSFOG00015016690) #31	mitfa (ENSSFOG00015016521) #32	zgc:113054 (ENSSFOG00015016449)	mdfic2 (ENSSFOG00015016439) #33	foxp1b (ENSSFOG00015016318)	EIF4E3 (ENSSFOG00015016279) #36	gpr27 (ENSSFOG00015030628) #37
Clupeocephala	ANCESTRAL SPECIES	95	ENSGT00940000155048.d.a	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a.c.a	ENSGT00940000153456.b.b	ENSGT01030000234637.b.d.a.a	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a	ENSGT00940000156315.e.b	ENSGT00390000009630
Euteleosteomorpha	ANCESTRAL SPECIES	5	ENSGT00940000160100	ENSGT00590000083094.a.a.c.a	ENSGT00940000153456.b.b	ENSGT01030000234637.b.d.a.a	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a	ENSGT00940000156315.e.b	ENSGT00390000009630
Protacanthopterygii	ANCESTRAL SPECIES	3	ENSGT00590000083094.a.a.c.a	ENSGT00940000153456.b.b	ENSGT01030000234637.b.d.a.a	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT01030000234549.a.a.a.a.a.b.b.a.b	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000163880	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a	ENSGT00940000156315.e.b	ENSGT00390000009630	ENSGT00940000155864.a.b	ENSGT00390000018439
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	300						ENSGT01030000234637.b.d.a.a.f	ENSGT00390000002873 #9	ENSGT00940000157279.l #10	ENSGT00510000046608.B.q #11	ENSGT00940000153629.a.a.b.c #13	ENSGT00940000156409.e #14	ENSGT00940000155820.a.f.a #15	ENSGT00940000155820.a.e #15	ENSGT00550000074950.b #17	ENSGT00940000158502.e #19	ENSGT00940000158653.k #22	ENSGT00940000164303.b.a.a	ENSGT00390000010170.a.a.a #23	ENSGT00940000163880	ENSGT00940000155644.b.a.a	ENSGT00940000162607.b	ENSGT00940000159882.l #25	ENSGT00940000156493.e #26	ENSGT00390000010697.e #27	ENSGT00940000157922.b.e.b	ENSGT00940000155327.g.a	ENSGT00940000157363.i.b	ENSGT00940000153920.b.d	ENSGT00990000213681	ENSGT00940000154554.a.m.b	ENSGT00940000156315.e.b.b
Huchen	MODERN SPECIES	618												ENSHHUG00000038044 #15	slc25a26 (ENSHHUG00000038051) #17	ENSHHUG00000038067	LRIG1 (ENSHHUG00000038084) #19	kbtbd8 (ENSHHUG00000038345) #22	ENSHHUG00000038358	suclg2 (ENSHHUG00000038360) #23
Salmoninae_a	ANCESTRAL SPECIES	25	ENSGT00390000011228.b.a.e.a.f	ENSGT00990000212636	ENSGT00990000210161	ENSGT00940000155048.d.a.a	ENSGT00940000160100.c	ENSGT00590000083094.a.a.c.a.m	ENSGT01030000234637.b.d.a.a.f	ENSGT00390000002873.fb.b #9	ENSGT00940000157279.l #10	ENSGT00510000046608.B.q #11	ENSGT00940000153629.a.a.b.c #13	ENSGT00940000156409.e #14	ENSGT00940000155820.a.f.a #15	ENSGT00550000074950.b #17	ENSGT00940000158502.e #19	ENSGT00940000158653.k #22	ENSGT00940000164303.b.a.a	ENSGT00390000010170.a.a.a #23	ENSGT00940000163880	ENSGT00940000159882.l #25	ENSGT00940000156493.f #26	ENSGT00390000010697.f #27	ENSGT00940000158616.l	ENSGT00550000074831.k #28	ENSGT00940000157922.b.e.a	ENSGT00940000155327.g.b	ENSGT00940000157363.i.a	ENSGT00940000153920.b.c	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.m.a	ENSGT00940000156315.e.b.a
Salmo	ANCESTRAL SPECIES	6	ENSGT00390000011228.b.a.e.a.f	ENSGT00990000212636	ENSGT00990000210161	ENSGT00940000155048.d.a.a	ENSGT00940000160100.c	ENSGT00590000083094.a.a.c.a.m	ENSGT01030000234637.b.d.a.a.f	ENSGT00390000002873.fb.b #9	ENSGT00940000157279.l #10	ENSGT00510000046608.B.q #11	ENSGT00940000153629.a.a.b.c #13	ENSGT00940000156409.e #14	ENSGT00940000155820.a.f.a #15	ENSGT00550000074950.b #17	ENSGT00940000158502.e #19	ENSGT00940000158653.k #22	ENSGT00940000164303.b.a.a	ENSGT00390000010170.a.a.a #23	ENSGT00940000162607.b.d	ENSGT00940000159882.l.f.b #25	ENSGT00940000156493.f #26	ENSGT00390000010697.f #27	ENSGT00940000158616.l	ENSGT00550000074831.k #28	ENSGT00940000157922.b.e.a	ENSGT00940000155327.g.b	ENSGT00940000157363.i.a	ENSGT00940000153920.b.c	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.m.a	ENSGT00990000206890.a
River trout	MODERN SPECIES	7	ENSSTUG00000007418	ENSSTUG00000007672	ENSSTUG00000008451	ptprga (ENSSTUG00000009135)	fezf2 (ENSSTUG00000012873)	ENSSTUG00000012971	ENSSTUG00000015515	thoc7 (ENSSTUG00000015525) #9	ATXN7 (ENSSTUG00000015589) #10	psmd6 (ENSSTUG00000015628) #11	prickle2b (ENSSTUG00000015678) #13	ADAMTS9 (ENSSTUG00000015796) #14	magi1b (ENSSTUG00000017998) #15	slc25a26 (ENSSTUG00000018269) #17	LRIG1 (ENSSTUG00000018388) #19	kbtbd8 (ENSSTUG00000018803) #22	ENSSTUG00000018826	suclg2 (ENSSTUG00000018838) #23	ENSSTUG00000019110	ENSSTUG00000019114	TAFA4 (ENSSTUG00000019129) #25	EOGT (ENSSTUG00000019152) #26	tmf1 (ENSSTUG00000019400) #27	SLC9A3 (ENSSTUG00000019431)	ENSSTUG00000019787	PRKCD (ENSSTUG00000019832)	SFMBT1 (ENSSTUG00000020157)	stimate (ENSSTUG00000020532)	mustn1b (ENSSTUG00000020551)	ENSSTUG00000020569	ENSSTUG00000021003
Atlantic salmon	MODERN SPECIES	14	ENSSSAG00000091093	ENSSSAG00000077929	ptprga (ENSSSAG00000076977)	FEZF2 (ENSSSAG00000103036)	ENSSSAG00000116955	ENSSSAG00000070239	SYNPR (ENSSSAG00000069971)	thoc7 (ENSSSAG00000069963) #9	ATXN7 (ENSSSAG00000116622) #10	psmd6 (ENSSSAG00000069956) #11	prickle2b (ENSSSAG00000069924) #13	ADAMTS9 (ENSSSAG00000069386) #14	magi1b (ENSSSAG00000066736) #15	slc25a26 (ENSSSAG00000107083) #17	LRIG1 (ENSSSAG00000065112) #19	kbtbd8 (ENSSSAG00000065048) #22	suclg2 (ENSSSAG00000064004) #23	TAFA1 (ENSSSAG00000113299)	TAFA4 (ENSSSAG00000063971) #25	EOGT (ENSSSAG00000061166) #26	ENSSSAG00000111857	tmf1 (ENSSSAG00000060460) #27	ENSSSAG00000055297	uba3 (ENSSSAG00000052563) #28	ENSSSAG00000052450	ENSSSAG00000051846	ENSSSAG00000051403	stimate (ENSSSAG00000051348)	ENSSSAG00000051261	ENSSSAG00000104145	ENSSSAG00000012000
Oncorhynchus	ANCESTRAL SPECIES	5	ENSGT00390000014429.a.f	ENSGT00390000011228.b.a.e.a.f	ENSGT00990000212636	ENSGT00990000210161	ENSGT00940000155048.d.a.a	ENSGT00940000160100.c	ENSGT00590000083094.a.a.c.a.m	ENSGT01030000234637.b.d.a.a.f	ENSGT00390000002873.fb.a #9	ENSGT00940000157279.l #10	ENSGT00510000046608.B.q #11	ENSGT00940000153629.a.a.b.c #13	ENSGT00940000156409.e #14	ENSGT00940000155820.a.f.a #15	ENSGT00940000158502.e #19	ENSGT00940000158653.k #22	ENSGT00940000164303.b.a.a	ENSGT00390000010170.a.a.a #23	ENSGT00940000163880	ENSGT00940000159882.l #25	ENSGT00940000156493.f #26	ENSGT00390000010697.f #27	ENSGT00940000158616.l	ENSGT00550000074831.k #28	ENSGT00940000157922.b.e.a	ENSGT00940000155327.g.b	ENSGT00940000157363.i.a	ENSGT00940000153920.b.c	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.m.a	ENSGT00940000156315.e.b.a
Oncorhynchus_a	ANCESTRAL SPECIES	4	ENSGT00990000212636	ENSGT00990000210161	ENSGT00940000155048.d.a.a	ENSGT00940000160100.c	ENSGT00590000083094.a.a.c.a.m	ENSGT01030000234637.b.d.a.a.f	ENSGT00390000002873.fb.a #9	ENSGT00940000157279.l #10	ENSGT00510000046608.B.q #11	ENSGT00940000153629.a.a.b.c #13	ENSGT00940000156409.e #14	ENSGT01050000247977	ENSGT00940000155820.a.f.a #15	ENSGT01000000220281	ENSGT00940000158502.e #19	ENSGT00940000158653.k #22	ENSGT00940000164303.b.a.a	ENSGT00390000010170.a.a.a #23	ENSGT00940000163880	ENSGT00940000159882.l #25	ENSGT00940000156493.f #26	ENSGT00390000010697.f #27	ENSGT00940000158616.l	ENSGT00550000074831.k #28	ENSGT00940000157922.b.e.a	ENSGT00940000155327.g.b	ENSGT00940000157363.i.a	ENSGT00940000153920.b.c	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.m.a	ENSGT00940000156315.e.b.a
Coho salmon	MODERN SPECIES	25	ptprga (ENSOKIG00005026994)	fezf2 (ENSOKIG00005026932)	ENSOKIG00005026910	ENSOKIG00005026107	SYNPR (ENSOKIG00005026015)	thoc7 (ENSOKIG00005025990) #9	ATXN7 (ENSOKIG00005025974) #10	psmd6 (ENSOKIG00005025959) #11	ENSOKIG00005025947	prickle2b (ENSOKIG00005025920) #13	ADAMTS9 (ENSOKIG00005022360) #14	ENSOKIG00005022116	magi1b (ENSOKIG00005022063) #15	ENSOKIG00005020090	LRIG1 (ENSOKIG00005019137) #19	kbtbd8 (ENSOKIG00005019002) #22	ENSOKIG00005018991	suclg2 (ENSOKIG00005018836) #23	ENSOKIG00005018811	TAFA4 (ENSOKIG00005018785) #25	ENSOKIG00005018767 #26	tmf1 (ENSOKIG00005018685) #27	SLC9A3 (ENSOKIG00005018521)	ENSOKIG00005018495	uba3 (ENSOKIG00005018391) #28	ENSOKIG00005018359	PRKCD (ENSOKIG00005018195)	SFMBT1 (ENSOKIG00005017966)	stimate (ENSOKIG00005017889)	mustn1b (ENSOKIG00005017881)	ENSOKIG00005017762
Chinook salmon	MODERN SPECIES	31	ENSOTSG00005047400	ptprga (ENSOTSG00005047161)	fezf2 (ENSOTSG00005047159)	ENSOTSG00005047158	ENSOTSG00005043562	SYNPR (ENSOTSG00005043546)	thoc7 (ENSOTSG00005043545) #9	ATXN7 (ENSOTSG00005043544) #10	psmd6 (ENSOTSG00005043543) #11	prickle2b (ENSOTSG00005043542) #13	ADAMTS9 (ENSOTSG00005043173) #14	ENSOTSG00005043165	magi1b (ENSOTSG00005043163) #15	ENSOTSG00005043161	LRIG1 (ENSOTSG00005042391) #19	kbtbd8 (ENSOTSG00005042384) #22	ENSOTSG00005042383	suclg2 (ENSOTSG00005042264) #23	ENSOTSG00005042262	TAFA4 (ENSOTSG00005042261) #25	EOGT (ENSOTSG00005042260) #26	SLC9A3 (ENSOTSG00005039463)	uba3 (ENSOTSG00005038990) #28	ENSOTSG00005038971	ENSOTSG00005038967	ENSOTSG00005038963	PRKCD (ENSOTSG00005038959)	SFMBT1 (ENSOTSG00005038902)	stimate (ENSOTSG00005038898)	mustn1b (ENSOTSG00005038896)	ENSOTSG00005038266
Rainbow trout	MODERN SPECIES	28	ENSOMYG00000014752	ENSOMYG00000014726	ptprga (ENSOMYG00000009393)	ENSOMYG00000051363	FEZF2 (ENSOMYG00000007850)	ENSOMYG00000007302	ENSOMYG00000068906	SYNPR (ENSOMYG00000006415)	thoc7 (ENSOMYG00000006372) #9	ATXN7 (ENSOMYG00000006294) #10	psd6 (ENSOMYG00000006222) #11	prickle2b (ENSOMYG00000006067) #13	ADAMTS9 (ENSOMYG00000005611) #14	magi1b (ENSOMYG00000004634) #15	LRIG1 (ENSOMYG00000004475) #19	kbtbd8 (ENSOMYG00000004447) #22	ENSOMYG00000004410	suclg2 (ENSOMYG00000004187) #23	ENSOMYG00000003673	TAFA4 (ENSOMYG00000003645) #25	EOGT (ENSOMYG00000003468) #26	tmf1 (ENSOMYG00000003278) #27	nhe3 (ENSOMYG00000002865)	ENSOMYG00000055843	uba3 (ENSOMYG00000002232) #28	ENSOMYG00000001952	ENSOMYG00000001891	SFMBT1 (ENSOMYG00000001696)	stimate (ENSOMYG00000001567)	mustn1b (ENSOMYG00000001536)	ENSOMYG00000024768
Salmoninae	ANCESTRAL SPECIES	1023														ENSGT00550000074950.a #17	ENSGT00940000158502.f #19	ENSGT00940000158653.l #22	ENSGT00940000164303.b.a.b	ENSGT00390000010170.a.a.b #23
Salmoninae_a	ANCESTRAL SPECIES	29	ENSGT00590000083094.a.a.c.a.n	ENSGT00940000153456.b.b	ENSGT01030000234637.b.d.a.a.e	ENSGT00940000164201.c.a.s	ENSGT00940000155686	ENSGT00390000002873.fb.a #9	ENSGT00940000157279.k #10	ENSGT00510000046608.B.r #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b.d #13	ENSGT00940000156409.f #14	ENSGT01030000234549.a.a.a.a.a.b.b.a.b	ENSGT00940000155820.a.f.b #15	ENSGT00550000074950.a #17	ENSGT00940000158502.f #19	ENSGT00940000158653.l #22	ENSGT00940000164303.b.a.b	ENSGT00390000010170.a.a.b #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493.e #26	ENSGT00390000010697.e #27	ENSGT00940000157922.b.e.b	ENSGT00940000155327.g.a	ENSGT00940000157363.i.b	ENSGT00940000153920.b.d	ENSGT00990000213681	ENSGT00940000154554.a.m.b	ENSGT00940000156315.e.b.b	ENSGT00390000009630.t	ENSGT00940000155864.a.b.d
Oncorhynchus	ANCESTRAL SPECIES	1	ENSGT00390000005214	ENSGT00940000160100.d	ENSGT00590000083094.a.a.c.a.n	ENSGT00940000153456.b.b	ENSGT01030000234637.b.d.a.a.e	ENSGT00940000164201.c.a.s	ENSGT00950000185997	ENSGT00940000157279.k #10	ENSGT00510000046608.B.r #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b.d #13	ENSGT00940000156409.f #14	ENSGT00940000155820.a.f.b #15	ENSGT00550000074950.a #17	ENSGT00940000158502.f #19	ENSGT00940000158653.l #22	ENSGT00940000164303.b.a.b	ENSGT00390000010170.a.a.b #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493.e #26	ENSGT00390000010697.e #27	ENSGT00940000157922.b.e.b	ENSGT00940000155327.g.a	ENSGT00940000157363.i.b	ENSGT00940000153920.b.d	ENSGT00940000154554.a.m.b	ENSGT00940000156315.e.b.b	ENSGT00390000009630.t	ENSGT00940000155864.a.b.d	ENSGT00990000212083
Oncorhynchus_a	ANCESTRAL SPECIES	3	ENSGT00940000155048.d.a.b	ENSGT00390000005214	ENSGT00940000160100.d	ENSGT00590000083094.a.a.c.a.n	ENSGT00940000153456.b.b	ENSGT01030000234637.b.d.a.a.e	ENSGT00940000164201.c.a.s	ENSGT00940000157279.k #10	ENSGT00510000046608.B.r #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b.d #13	ENSGT00940000156409.f #14	ENSGT00940000155820.a.f.b #15	ENSGT00550000074950.a #17	ENSGT00940000158502.f #19	ENSGT00940000158653.l #22	ENSGT00940000164303.b.a.b	ENSGT00390000010170.a.a.b #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493.e #26	ENSGT00390000010697.e #27	ENSGT00940000157922.b.e.b	ENSGT00940000155327.g.a	ENSGT00940000157363.i.b	ENSGT00940000153920.b.d	ENSGT00940000154554.a.m.b	ENSGT00940000156315.e.b.b	ENSGT00390000009630.t	ENSGT00940000155864.a.b.d	ENSGT00990000212083
Coho salmon	MODERN SPECIES		ENSOKIG00005030784	ENSOKIG00005029666	nampt2 (ENSOKIG00005029530)	SYNPR (ENSOKIG00005029514)	ENSOKIG00005029506	mxa (ENSOKIG00005029032)	ATXN7 (ENSOKIG00005028979) #10	psmd6 (ENSOKIG00005028894) #11	slc2a9l1 (ENSOKIG00005028854)	prickle2b (ENSOKIG00005028847) #13	ADAMTS9 (ENSOKIG00005028063) #14	magi1b (ENSOKIG00005027755) #15	ENSOKIG00005027707	slc25a26 (ENSOKIG00005027618) #17	LRIG1 (ENSOKIG00005026777) #19	kbtbd8 (ENSOKIG00005026707) #22	ENSOKIG00005026699	suclg2 (ENSOKIG00005025777) #23	TAFA1 (ENSOKIG00005025701)	tafa4b (ENSOKIG00005025679)	EOGT (ENSOKIG00005025401) #26	tmf1 (ENSOKIG00005025037) #27	ENSOKIG00005024989	PRKCD (ENSOKIG00005023828)	SFMBT1 (ENSOKIG00005023565)	stimate (ENSOKIG00005023538)	ENSOKIG00005023518	ITIH3 (ENSOKIG00005023207)	GATA2 (ENSOKIG00005023154)	RPN1 (ENSOKIG00005022986)	RAB7A (ENSOKIG00005022886)
Chinook salmon	MODERN SPECIES	11	ccdc3b (ENSOTSG00005004252)	FAM107A (ENSOTSG00005004254)	fhit (ENSOTSG00005004255)	ptprga (ENSOTSG00005004286)	C3orf14 (ENSOTSG00005007640)	fezf2 (ENSOTSG00005007641)	ENSOTSG00005007644	nampt2 (ENSOTSG00005010666)	SYNPR (ENSOTSG00005010667)	prickle2b (ENSOTSG00005010669) #13	ADAMTS9 (ENSOTSG00005010671) #14	ENSOTSG00005010709	magi1b (ENSOTSG00005010710) #15	ENSOTSG00005010741	LRIG1 (ENSOTSG00005010745) #19	kbtbd8 (ENSOTSG00005011597) #22	ENSOTSG00005011598	suclg2 (ENSOTSG00005011599) #23	TAFA1 (ENSOTSG00005012208)	TAFA4 (ENSOTSG00005012209) #25	EOGT (ENSOTSG00005012210) #26	tmf1 (ENSOTSG00005012220) #27	FGD5 (ENSOTSG00005012226)	PRKCD (ENSOTSG00005012264)	SFMBT1 (ENSOTSG00005014791)	stimate (ENSOTSG00005014824)	ITIH3 (ENSOTSG00005014825)	gata2a (ENSOTSG00005014838)	rpn1 (ENSOTSG00005014841)	rab7a (ENSOTSG00005015548)	ENSOTSG00005015549
Rainbow trout	MODERN SPECIES	8	ENSOMYG00000035992	nampt2 (ENSOMYG00000038345)	SYNPR (ENSOMYG00000038398)	mx (ENSOMYG00000038725)	ENSOMYG00000039416	ATXN7 (ENSOMYG00000039430) #10	psmd6 (ENSOMYG00000039477) #11	slc2a9l1 (ENSOMYG00000039507)	prickle2b (ENSOMYG00000039526) #13	ADAMTS9 (ENSOMYG00000039854) #14	ENSOMYG00000064509	ENSOMYG00000040100	magi1b (ENSOMYG00000040244) #15	slc25a26 (ENSOMYG00000040359) #17	LRIG1 (ENSOMYG00000040365) #19	kbtbd8 (ENSOMYG00000040387) #22	ENSOMYG00000040394	suclg2 (ENSOMYG00000040429) #23	ENSOMYG00000040447	ENSOMYG00000073737	EOGT (ENSOMYG00000075266) #26	tmf1 (ENSOMYG00000040456) #27	ENSOMYG00000040466	ENSOMYG00000051566	ENSOMYG00000051694	ENSOMYG00000047997	ENSOMYG00000040618	ENSOMYG00000041413	stimate (ENSOMYG00000041521)	ENSOMYG00000041533	GATA2 (ENSOMYG00000041565)
Salmo	ANCESTRAL SPECIES	33	ENSGT00590000083094.a.a.c.a.n	ENSGT00940000153456.b.b	ENSGT01030000234637.b.d.a.a.e	ENSGT00940000164201.c.a.s	ENSGT00940000155686	ENSGT00390000002873.fb.a #9	ENSGT00940000157279.k #10	ENSGT00510000046608.B.r #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b.d #13	ENSGT00940000156409.f #14	ENSGT01030000234549.a.a.a.a.a.b.b.a.b	ENSGT00940000155820.a.f.b #15	ENSGT00550000074950.a #17	ENSGT00940000158502.f #19	ENSGT00940000158653.l #22	ENSGT00940000164303.b.a.b	ENSGT00390000010170.a.a.b #23	ENSGT00940000162607.b.c	ENSGT00940000159882.l.f.a #25	ENSGT00940000156493.e #26	ENSGT00390000010697.e #27	ENSGT01060000253495	ENSGT00940000157922.b.e.b	ENSGT00940000155327.g.a	ENSGT00940000157363.i.b	ENSGT00940000153920.b.d	ENSGT00990000213681	ENSGT00940000154554.a.m.b	ENSGT00940000156315.e.b.b	ENSGT00390000009630.t
Atlantic salmon	MODERN SPECIES	3	nampt2 (ENSSSAG00000077480)	synpr (ENSSSAG00000085340)	mx2 (ENSSSAG00000077530)	ENSSSAG00000098558	thoc7 (ENSSSAG00000077684) #9	atxn7 (ENSSSAG00000077698) #10	psmd6 (ENSSSAG00000077709) #11	slc2a9l1 (ENSSSAG00000077730)	prickle2b (ENSSSAG00000077734) #13	ADAMTS9 (ENSSSAG00000077769) #14	ENSSSAG00000077893	magi1b (ENSSSAG00000078077) #15	SAMC (ENSSSAG00000078485) #17	LRIG1 (ENSSSAG00000078515) #19	ENSSSAG00000087561	kbtbd8 (ENSSSAG00000078589) #22	ENSSSAG00000078595	suclg2 (ENSSSAG00000078618) #23	TAFA1 (ENSSSAG00000078671)	tafa4b (ENSSSAG00000121989)	EOGT (ENSSSAG00000078690) #26	tmf1 (ENSSSAG00000111964) #27	ENSSSAG00000100253	ENSSSAG00000078755	ENSSSAG00000078795	ENSSSAG00000079512	stimate (ENSSSAG00000113593)	ENSSSAG00000079583	GATA2 (ENSSSAG00000079702)	ENSSSAG00000079722	RAB7A (ENSSSAG00000079952)
River trout	MODERN SPECIES	5	fezf2 (ENSSTUG00000048682)	ENSSTUG00000047683	nampt2 (ENSSTUG00000047600)	ENSSTUG00000047594	mxa (ENSSTUG00000046959)	ENSSTUG00000046924	ATXN7 (ENSSTUG00000046907) #10	psmd6 (ENSSTUG00000046866) #11	slc2a9l1 (ENSSTUG00000046802)	prickle2b (ENSSTUG00000046785) #13	ADAMTS9 (ENSSTUG00000045845) #14	RHO (ENSSTUG00000045775)	magi1b (ENSSTUG00000045570) #15	slc25a26 (ENSSTUG00000045459) #17	LRIG1 (ENSSTUG00000045194) #19	kbtbd8 (ENSSTUG00000045170) #22	ENSSTUG00000045152	suclg2 (ENSSTUG00000044590) #23	TAFA1 (ENSSTUG00000044557)	TAFA4 (ENSSTUG00000044548) #25	EOGT (ENSSTUG00000044445) #26	tmf1 (ENSSTUG00000044281) #27	ENSSTUG00000044270	ENSSTUG00000044246	PRKCD (ENSSTUG00000044077)	SFMBT1 (ENSSTUG00000043856)	stimate (ENSSTUG00000043841)	ENSSTUG00000043831	ITIH3 (ENSSTUG00000042535)	ENSSTUG00000042443	gata2a (ENSSTUG00000042412)
Huchen	MODERN SPECIES	2122																kbtbd8 (ENSHHUG00000024213) #22	ENSHHUG00000024229	suclg2 (ENSHHUG00000024247) #23
Northern pike	MODERN SPECIES	16	nampt2 (ENSELUG00000008096)	SYNPR (ENSELUG00000008054)	thoc7 (ENSELUG00000033135) #9	MX1 (ENSELUG00000007988)	MX1 (ENSELUG00000033975)	thoc7 (ENSELUG00000007905) #9	ATXN7 (ENSELUG00000007854) #10	psmd6 (ENSELUG00000007816) #11	slc2a9l1 (ENSELUG00000007779)	prickle2b (ENSELUG00000000278) #13	ADAMTS9 (ENSELUG00000007560) #14	magi1b (ENSELUG00000007399) #15	ENSELUG00000026979	slc25a26 (ENSELUG00000007227) #17	LRIG1 (ENSELUG00000007164) #19	kbtbd8 (ENSELUG00000007096) #22	ENSELUG00000007090	suclg2 (ENSELUG00000007029) #23	ENSELUG00000025067	ENSELUG00000032254	TAFA1 (ENSELUG00000000237)	tafa4b (ENSELUG00000006946)	EOGT (ENSELUG00000006927) #26	tmf1 (ENSELUG00000006874) #27	ENSELUG00000006822	PRKCD (ENSELUG00000016499)	SFMBT1 (ENSELUG00000006763)	stimate (ENSELUG00000006648)	mustn1b (ENSELUG00000034425)	itih3a.1 (ENSELUG00000006609)	gata2a (ENSELUG00000006579)
Acanthomorphata	ANCESTRAL SPECIES	32	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a	ENSGT00940000156315.e.b	ENSGT00390000009630
Euacanthomorphacea	ANCESTRAL SPECIES	1	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a	ENSGT00940000156315.e.b	ENSGT00390000009630
Pinecone sodierfish	MODERN SPECIES	19	zbtb49 (ENSMMDG00005004438)	SYNPR (ENSMMDG00005004471)	ENSMMDG00005004968	ENSMMDG00005010504	ENSMMDG00005010509	thoc7 (ENSMMDG00005010524) #9	ENSMMDG00005010525 #10	ENSMMDG00005010528 #10	psmd6 (ENSMMDG00005010533) #11	slc2a9l1 (ENSMMDG00005010543)	prickle2b (ENSMMDG00005010548) #13	ADAMTS9 (ENSMMDG00005010550) #14	magi1b (ENSMMDG00005010567) #15	slc25a26 (ENSMMDG00005010577) #17	LRIG1 (ENSMMDG00005010605) #19	kbtbd8 (ENSMMDG00005010621) #22	ENSMMDG00005010626	suclg2 (ENSMMDG00005010811) #23	TAFA1 (ENSMMDG00005011455)	tafa4b (ENSMMDG00005011457)	EOGT (ENSMMDG00005011461) #26	tmf1 (ENSMMDG00005011474) #27	uba3 (ENSMMDG00005011730) #28	ENSMMDG00005012330	PRKCD (ENSMMDG00005012353)	SFMBT1 (ENSMMDG00005013319)	stimate (ENSMMDG00005013860)	mustn1b (ENSMMDG00005013862)	ITIH3 (ENSMMDG00005013874)	ITIH3 (ENSMMDG00005013974)	ITIH3 (ENSMMDG00005014078)
Percomorphaceae	ANCESTRAL SPECIES	1	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000154554.a.k.b	ENSGT00940000156315.e.b
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	MODERN SPECIES	510	ZMYND8 (ENSHCOG00000005670)	ARPC4 (ENSHCOG00000005642)	tada3l (ENSHCOG00000005625)	RBM38 (ENSHCOG00000005622)	rae1 (ENSHCOG00000005616)	BMP7 (ENSHCOG00000005555)	ENSHCOG00000004876	LSM14B (ENSHCOG00000004867)	ENSHCOG00000004862	ENSHCOG00000004847	cdh4 (ENSHCOG00000004825)	ENSHCOG00000004773	slc25a26 (ENSHCOG00000004718) #17	ENSHCOG00000004706	LRIG1 (ENSHCOG00000004691) #19	kbtbd8 (ENSHCOG00000004650) #22	ENSHCOG00000004623	suclg2 (ENSHCOG00000004615) #23	ENSHCOG00000004607	tafa4b (ENSHCOG00000004598)	EOGT (ENSHCOG00000004579) #26	tmf1 (ENSHCOG00000004533) #27	ENSHCOG00000000829	PRKCD (ENSHCOG00000004336)
Tiger tail seahorse	MODERN SPECIES	728																ENSHCOG00000009250 #22
Percomorphaceae_B	ANCESTRAL SPECIES	3	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT01100000263491.a.b.a.a.a.a.b	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000154554.a.k.b	ENSGT00940000156315.e.b
Ovalentaria	ANCESTRAL SPECIES	2	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000154554.a.k.b	ENSGT00940000156315.e.b
Ovalentaria_B	ANCESTRAL SPECIES	5	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000154554.a.k.b	ENSGT00940000156315.e.b
Pomacentridae	ANCESTRAL SPECIES	3	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000154554.a.k.b	ENSGT00940000156315.e.b
Pomacentridae_A	ANCESTRAL SPECIES	2	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000154554.a.k.b	ENSGT00940000156315.e.b
Amphiprion	ANCESTRAL SPECIES	38	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000154554.a.k.b	ENSGT00940000156315.e.b
Orange clownfish	MODERN SPECIES	20	TMEM128 (ENSAPEG00000001861)	lyar (ENSAPEG00000001848)	zbtb49 (ENSAPEG00000001834)	SYNPR (ENSAPEG00000001767)	mxb (ENSAPEG00000001712)	MX1 (ENSAPEG00000001694)	thoc7 (ENSAPEG00000001653) #9	ATXN7 (ENSAPEG00000001638) #10	psmd6 (ENSAPEG00000001602) #11	slc2a9l1 (ENSAPEG00000001561)	prickle2b (ENSAPEG00000001516) #13	ADAMTS9 (ENSAPEG00000001392) #14	magi1b (ENSAPEG00000001295) #15	slc25a26 (ENSAPEG00000001243) #17	LRIG1 (ENSAPEG00000001232) #19	kbtbd8 (ENSAPEG00000001190) #22	ENSAPEG00000001166	suclg2 (ENSAPEG00000001127) #23	TAFA1 (ENSAPEG00000001086)	tafa4b (ENSAPEG00000001066)	EOGT (ENSAPEG00000001000) #26	tmf1 (ENSAPEG00000000919) #27	uba3 (ENSAPEG00000000785) #28	ENSAPEG00000000705	PRKCD (ENSAPEG00000000644)	SFMBT1 (ENSAPEG00000000504)	stimate (ENSAPEG00000000470)	mustn1b (ENSAPEG00000000453)	itih3a.1 (ENSAPEG00000000445)	gata2a (ENSAPEG00000000399)	rpn1 (ENSAPEG00000000349)
Clown anemonefish	MODERN SPECIES	561	dcdc2b (ENSAOCG00000005983)	tmem234 (ENSAOCG00000005998)	si:dkey-221l4.10 (ENSAOCG00000006012)	rcan3 (ENSAOCG00000006030)	nipal3 (ENSAOCG00000006051)	ENSAOCG00000006071	ENSAOCG00000006082	cnksr1 (ENSAOCG00000006108)	rps6ka1 (ENSAOCG00000006222)	ENSAOCG00000006246	prickle2b (ENSAOCG00000006270) #13	ADAMTS9 (ENSAOCG00000006398) #14	magi1b (ENSAOCG00000006499) #15	slc25a26 (ENSAOCG00000006535) #17	LRIG1 (ENSAOCG00000006617) #19	kbtbd8 (ENSAOCG00000006639) #22	ENSAOCG00000006663
Spiny chromis	MODERN SPECIES	45														slc25a26 (ENSAPOG00000020612) #17	LRIG1 (ENSAPOG00000020628) #19	kbtbd8 (ENSAPOG00000020652) #22	ENSAPOG00000020659	ptger4b (ENSAPOG00000020665)	MAP1B (ENSAPOG00000020677)	ptcd2 (ENSAPOG00000020682)	CACFD1 (ENSAPOG00000020689)	ENSAPOG00000020748	garnl3 (ENSAPOG00000020817)	ptges (ENSAPOG00000020828)	usp20 (ENSAPOG00000020941)	ENSAPOG00000020979	RPL7A (ENSAPOG00000020989)	surf1 (ENSAPOG00000021001)	surf6 (ENSAPOG00000021015)	kyat1 (ENSAPOG00000021062)	spout1 (ENSAPOG00000021073)
Bicolor damselfish	MODERN SPECIES	418												ENSSPAG00000003079 #15	ENSSPAG00000003084	slc25a26 (ENSSPAG00000003100) #17	LRIG1 (ENSSPAG00000003138) #19	kbtbd8 (ENSSPAG00000003170) #22	ENSSPAG00000003183	suclg2 (ENSSPAG00000003198) #23	TAFA1 (ENSSPAG00000003232)
Cichlidae	ANCESTRAL SPECIES	1	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000154554.a.k.b	ENSGT00940000156315.e.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	4	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a.a.a	ENSGT00940000154554.a.k.a.a.b	ENSGT00940000154554.a.k.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	2	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173.f	ENSGT00940000166173.e	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a.a.a	ENSGT00940000154554.a.k.a.a.b	ENSGT00940000154554.a.k.b
Haplochromini	ANCESTRAL SPECIES	1	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT00940000164201.c.a	ENSGT00940000155686.nb.a	ENSGT00940000155686.ob	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173.f	ENSGT00940000166173.e	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a.a.a	ENSGT00940000154554.a.k.a.a.b	ENSGT00940000154554.a.k.b
Haplochromini_A	ANCESTRAL SPECIES		ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT00940000155686.nb.a	ENSGT00940000164201.c.a	ENSGT00940000155686.ob	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173.f	ENSGT00940000166173.e	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a.a.a	ENSGT00940000154554.a.k.a.a.b	ENSGT00940000154554.a.k.b
Haplochromini_B	ANCESTRAL SPECIES		ENSGT01030000234637.b.d.a.a	ENSGT00940000164201.c.a.j.a	ENSGT00940000164201.c.a.j.b	ENSGT00940000155686.nb.a	ENSGT00940000164201.c.a.i	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173.f	ENSGT00940000166173.e	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a.a.a	ENSGT00940000154554.a.k.a.a.b	ENSGT00940000154554.a.k.b
Zebra mbuna	MODERN SPECIES	1108	ENSMZEG00005026819	ENSMZEG00005026758	ENSMZEG00005026755	ENSMZEG00005012472	ENSMZEG00005012013	thoc7 (ENSMZEG00005011996) #9	ATXN7 (ENSMZEG00005011973) #10	psmd6 (ENSMZEG00005011958) #11	ENSMZEG00005011943	slc2a9l1 (ENSMZEG00005011909)	prickle2b (ENSMZEG00005011873) #13	ADAMTS9 (ENSMZEG00005011834) #14	magi1b (ENSMZEG00005011757) #15	slc25a26 (ENSMZEG00005011715) #17	LRIG1 (ENSMZEG00005011649) #19	kbtbd8 (ENSMZEG00005011624) #22	ENSMZEG00005011611	suclg2 (ENSMZEG00005011598) #23	TAFA1 (ENSMZEG00005011576)	tafa4b (ENSMZEG00005011559)	EOGT (ENSMZEG00005011540) #26	tmf1 (ENSMZEG00005011491) #27	uba3 (ENSMZEG00005011443) #28	ENSMZEG00005011417	PRKCD (ENSMZEG00005011360)	SFMBT1 (ENSMZEG00005011290)	stimate (ENSMZEG00005011255)	mustn1b (ENSMZEG00005011247)	ENSMZEG00005011228	ENSMZEG00005011066	gata2a (ENSMZEG00005011012)
Eastern happy	MODERN SPECIES	17	MX1 (ENSACLG00000015278)	ENSACLG00000015375	thoc7 (ENSACLG00000015413) #9	ENSACLG00000015452	ENSACLG00000015465 #10	ATXN7 (ENSACLG00000015481) #10	psmd6 (ENSACLG00000015495) #11	slc2a9l1 (ENSACLG00000015529)	slc2a9l1 (ENSACLG00000015697)	ENSACLG00000015747	prickle2b (ENSACLG00000015836) #13	ADAMTS9 (ENSACLG00000015936) #14	magi1b (ENSACLG00000016182) #15	slc25a26 (ENSACLG00000016974) #17	LRIG1 (ENSACLG00000017004) #19	kbtbd8 (ENSACLG00000017047) #22	ENSACLG00000017125	suclg2 (ENSACLG00000017134) #23	ENSACLG00000017195	TAFA1 (ENSACLG00000017236)	tafa4b (ENSACLG00000017248)	EOGT (ENSACLG00000017274) #26	tmf1 (ENSACLG00000017338) #27	uba3 (ENSACLG00000017463) #28	ENSACLG00000017602	PRKCD (ENSACLG00000017651)	SFMBT1 (ENSACLG00000017739)	stimate (ENSACLG00000017837)	mustn1b (ENSACLG00000017872)	ITIH3 (ENSACLG00000017933)	ITIH3 (ENSACLG00000017994)
P. nyererei	MODERN SPECIES	337	zbtb49 (ENSPNYG00000002658)	SYNPR (ENSPNYG00000002615)	ENSPNYG00000002581	ENSPNYG00000002563	ENSPNYG00000001452	ENSPNYG00000001309	thoc7 (ENSPNYG00000001260) #9	ATXN7 (ENSPNYG00000001227) #10	psmd6 (ENSPNYG00000001181) #11	prickle2b (ENSPNYG00000001146) #13	ADAMTS9 (ENSPNYG00000000891) #14	magi1b (ENSPNYG00000000799) #15	slc25a26 (ENSPNYG00000000752) #17	ENSPNYG00000000735	LRIG1 (ENSPNYG00000000727) #19	kbtbd8 (ENSPNYG00000000699) #22	ENSPNYG00000000696	suclg2 (ENSPNYG00000000650) #23	ENSPNYG00000000630	tafa4b (ENSPNYG00000000620)	EOGT (ENSPNYG00000000573) #26
Burton s mouthbrooder	MODERN SPECIES	580										slc2a9l1 (ENSHBUG00000006102)	prickle2b (ENSHBUG00000006087) #13	ADAMTS9 (ENSHBUG00000006062) #14	magi1b (ENSHBUG00000006012) #15	slc25a26 (ENSHBUG00000005881) #17	LRIG1 (ENSHBUG00000005818) #19	kbtbd8 (ENSHBUG00000005797) #22	ENSHBUG00000005767	suclg2 (ENSHBUG00000005756) #23
Lyretail cichlid	MODERN SPECIES	296	SYNPR (ENSNBRG00000019513)	ENSNBRG00000019556	ENSNBRG00000019722	ENSNBRG00000020639	thoc7 (ENSNBRG00000020675) #9	ENSNBRG00000020699 #10	ATXN7 (ENSNBRG00000020719) #10	psmd6 (ENSNBRG00000020732) #11	ENSNBRG00000020759	prickle2b (ENSNBRG00000020774) #13	ADAMTS9 (ENSNBRG00000020819) #14	magi1b (ENSNBRG00000021043) #15	slc25a26 (ENSNBRG00000021089) #17	LRIG1 (ENSNBRG00000021115) #19	ENSNBRG00000021200	kbtbd8 (ENSNBRG00000021214) #22	ENSNBRG00000021225	suclg2 (ENSNBRG00000021241) #23	ENSNBRG00000021293	tafa4b (ENSNBRG00000021329)	EOGT (ENSNBRG00000021343) #26	tmf1 (ENSNBRG00000021377) #27	uba3 (ENSNBRG00000021442) #28	ENSNBRG00000021491	PRKCD (ENSNBRG00000021535)	SFMBT1 (ENSNBRG00000021570)	stimate (ENSNBRG00000021623)	mustn1b (ENSNBRG00000021660)	ENSNBRG00000021672	ENSNBRG00000021697	ENSNBRG00000021739
Nile tilapia	MODERN SPECIES	17	TMEM128 (ENSONIG00000020367)	lyar (ENSONIG00000020366)	zbtb49 (ENSONIG00000020365)	SYNPR (ENSONIG00000038686)	ENSONIG00000034461	mxa (ENSONIG00000020362)	thoc7 (ENSONIG00000020361) #9	ATXN7 (ENSONIG00000020360) #10	psmd6 (ENSONIG00000020359) #11	slc2a9l1 (ENSONIG00000020358)	prickle2b (ENSONIG00000020357) #13	ADAMTS9 (ENSONIG00000020356) #14	magi1b (ENSONIG00000020355) #15	slc25a26 (ENSONIG00000020354) #17	LRIG1 (ENSONIG00000020353) #19	kbtbd8 (ENSONIG00000020352) #22	ENSONIG00000033409	suclg2 (ENSONIG00000020350) #23	TAFA1 (ENSONIG00000020349)	tafa4b (ENSONIG00000009959)	EOGT (ENSONIG00000020347) #26	tmf1 (ENSONIG00000020346) #27	uba3 (ENSONIG00000020345) #28	ENSONIG00000020344	PRKCD (ENSONIG00000020343)	SFMBT1 (ENSONIG00000020342)	stimate (ENSONIG00000020341)	mustn1b (ENSONIG00000038112)	ENSONIG00000040174	ENSONIG00000028182	ENSONIG00000028472
Midas cichlid	MODERN SPECIES	1324	ubap1 (ENSACIG00000004088)	dcaf12 (ENSACIG00000004159)	ENSACIG00000004207	ENSACIG00000004365	mxa (ENSACIG00000007486)	thoc7 (ENSACIG00000008742) #9	ATXN7 (ENSACIG00000008769) #10	psmd6 (ENSACIG00000008819) #11	slc2a9l1 (ENSACIG00000008854)	ENSACIG00000008955	prickle2b (ENSACIG00000008965) #13	ADAMTS9 (ENSACIG00000009002) #14	magi1b (ENSACIG00000009102) #15	slc25a26 (ENSACIG00000009152) #17	LRIG1 (ENSACIG00000009235) #19	kbtbd8 (ENSACIG00000009272) #22	ENSACIG00000009280	suclg2 (ENSACIG00000009305) #23	TAFA1 (ENSACIG00000009330)	tafa4b (ENSACIG00000009359)	EOGT (ENSACIG00000009375) #26	tmf1 (ENSACIG00000009419) #27	uba3 (ENSACIG00000009459) #28	ENSACIG00000009507	PRKCD (ENSACIG00000009624)	SFMBT1 (ENSACIG00000009660)	stimate (ENSACIG00000009697)	mustn1b (ENSACIG00000009722)	ENSACIG00000009769
Atherinomorphae	ANCESTRAL SPECIES	2	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000154554.a.k.b	ENSGT00940000156315.e.b
Cyprinodontiformes	ANCESTRAL SPECIES	2	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000154554.a.k.b	ENSGT00940000156315.e.b
Aplocheiloidei	ANCESTRAL SPECIES	12	ENSGT00940000157037.a.c.a	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000156315.e.b	ENSGT00390000009630
Mangrove rivulus	MODERN SPECIES	130	zbtb49 (ENSKMAG00000009855)	SYNPR (ENSKMAG00000009837)	MX1 (ENSKMAG00000009819)	papola (ENSKMAG00000009731)	ENSKMAG00000009699	ENSKMAG00000009687	thoc7 (ENSKMAG00000009670) #9	ATXN7 (ENSKMAG00000009651) #10	psmd6 (ENSKMAG00000009599) #11	slc2a9l1 (ENSKMAG00000009534)	prickle2b (ENSKMAG00000009469) #13	ADAMTS9 (ENSKMAG00000009305) #14	magi1b (ENSKMAG00000009105) #15	slc25a26 (ENSKMAG00000009025) #17	LRIG1 (ENSKMAG00000009007) #19	kbtbd8 (ENSKMAG00000008982) #22	ENSKMAG00000008959	suclg2 (ENSKMAG00000008923) #23	TAFA1 (ENSKMAG00000008898)	tafa4b (ENSKMAG00000008871)	EOGT (ENSKMAG00000008825) #26
Turquoise killifish	MODERN SPECIES	1619	SYNPR (ENSNFUG00015023960)	THOC7 (ENSNFUG00015023941) #9	ENSNFUG00015023937 #10	ATXN7 (ENSNFUG00015023931) #10	psmd6 (ENSNFUG00015023918) #11	slc2a9l1 (ENSNFUG00015023900)	prickle2b (ENSNFUG00015023892) #13	ENSNFUG00015023885	ADAMTS9 (ENSNFUG00015023332) #14	ENSNFUG00015023297	magi1b (ENSNFUG00015023276) #15	ENSNFUG00015023273	slc25a26 (ENSNFUG00015023260) #17	ENSNFUG00015023255	LRIG1 (ENSNFUG00015023223) #19	KBTBD8 (ENSNFUG00015023204) #22	ENSNFUG00015023197	SUCLG2 (ENSNFUG00015022912) #23	ENSNFUG00015022886	TAFA1 (ENSNFUG00015022878)	tafa4b (ENSNFUG00015022874)	EOGT (ENSNFUG00015022713) #26	TMF1 (ENSNFUG00015022278) #27	UBA3 (ENSNFUG00015022204) #28	FGD5 (ENSNFUG00015022195)	PRKCD (ENSNFUG00015021984)	SFMBT1 (ENSNFUG00015021843)	stimate (ENSNFUG00015021830)	mustn1b (ENSNFUG00015021826)	ITIH1 (ENSNFUG00015021065)	gata2a (ENSNFUG00015021019)
Cyprinodontoidei	ANCESTRAL SPECIES	4	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000154554.a.k.b	ENSGT00940000156315.e.b
NAME_4	ANCESTRAL SPECIES	96	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000154554.a.k.b	ENSGT00940000156315.e.b
Sheepshead minnow	MODERN SPECIES	447				pcsk1 (ENSCVAG00000018251)	ENSCVAG00000018193	ENSCVAG00000018181	ENSCVAG00000018156	ENSCVAG00000018048	ENSCVAG00000018034	gnrh2 (ENSCVAG00000018017)	prickle2b (ENSCVAG00000017999) #13	ADAMTS9 (ENSCVAG00000017976) #14	magi1b (ENSCVAG00000017863) #15	slc25a26 (ENSCVAG00000017582) #17	LRIG1 (ENSCVAG00000000643) #19	kbtbd8 (ENSCVAG00000017208) #22	ENSCVAG00000017191
Mummichog	MODERN SPECIES	2193	TMEM128 (ENSFHEG00000004286)	lyar (ENSFHEG00000004298)	zbtb49 (ENSFHEG00000004314)	SYNPR (ENSFHEG00000004371)	mxb (ENSFHEG00000004383)	MX1 (ENSFHEG00000004441)	thoc7 (ENSFHEG00000004406) #9	ATXN7 (ENSFHEG00000000111) #10	psmd6 (ENSFHEG00000004507) #11	slc2a9l1 (ENSFHEG00000004557)	prickle2b (ENSFHEG00000004574) #13	ADAMTS9 (ENSFHEG00000004663) #14	magi1b (ENSFHEG00000004730) #15	slc25a26 (ENSFHEG00000004767) #17	LRIG1 (ENSFHEG00000004781) #19	kbtbd8 (ENSFHEG00000004817) #22	ENSFHEG00000004830	suclg2 (ENSFHEG00000004870) #23	TAFA1 (ENSFHEG00000004881)	tafa4b (ENSFHEG00000004894)	EOGT (ENSFHEG00000004939) #26	tmf1 (ENSFHEG00000005025) #27	uba3 (ENSFHEG00000005137) #28	ENSFHEG00000005159	PRKCD (ENSFHEG00000005191)	SFMBT1 (ENSFHEG00000005237)	stimate (ENSFHEG00000005244)	ENSFHEG00000005262	ENSFHEG00000005311	ENSFHEG00000005465	gata2a (ENSFHEG00000005511)
Poeciliinae	ANCESTRAL SPECIES	4	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT00940000164201.c.a	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000154554.a.k.b	ENSGT00940000156315.e.b
Poecilia	ANCESTRAL SPECIES	20	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT00940000164201.c.a	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000163880	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000154554.a.k.b	ENSGT00940000156315.e.b
NAME_6	ANCESTRAL SPECIES	559																ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23
Amazon molly	MODERN SPECIES	584											ENSPFOG00000011433	tafa4b (ENSPFOG00000011426)	EOGT (ENSPFOG00000011338) #26	tmf1 (ENSPFOG00000011219) #27	uba3 (ENSPFOG00000010943) #28	kbtbd8 (ENSPFOG00000010885) #22	ENSPFOG00000010830	suclg2 (ENSPFOG00000010716) #23
Sailfin molly	MODERN SPECIES	871																kbtbd8 (ENSPLAG00000003833) #22	ENSPLAG00000003841	suclg2 (ENSPLAG00000003860) #23
Guppy	MODERN SPECIES	457	TMEM128 (ENSPREG00000019618)	lyar (ENSPREG00000019599)	zbtb49 (ENSPREG00000019585)	ENSPREG00000019545	ENSPREG00000018941	ENSPREG00000018802	thoc7 (ENSPREG00000018772) #9	ATXN7 (ENSPREG00000018749) #10	psmd6 (ENSPREG00000018726) #11	slc2a9l1 (ENSPREG00000018703)	prickle2b (ENSPREG00000018672) #13	ADAMTS9 (ENSPREG00000018605) #14	magi1b (ENSPREG00000018445) #15	slc25a26 (ENSPREG00000018367) #17	LRIG1 (ENSPREG00000018329) #19	kbtbd8 (ENSPREG00000018317) #22	ENSPREG00000018305	suclg2 (ENSPREG00000018268) #23	ENSPREG00000018226	tafa4b (ENSPREG00000018200)	EOGT (ENSPREG00000018162) #26	tmf1 (ENSPREG00000018090) #27	uba3 (ENSPREG00000018026) #28	ENSPREG00000017995	PRKCD (ENSPREG00000017949)	SFMBT1 (ENSPREG00000017887)	stimate (ENSPREG00000017863)	mustn1b (ENSPREG00000017854)	itih3a.1 (ENSPREG00000017803)	gata2a (ENSPREG00000017783)	rpn1 (ENSPREG00000017767)
Platyfish	MODERN SPECIES	12	TMEM128 (ENSXMAG00000026106)	lyar (ENSXMAG00000002067)	zbtb49 (ENSXMAG00000021595)	SYNPR (ENSXMAG00000021931)	MX1 (ENSXMAG00000002020)	thoc7 (ENSXMAG00000002014) #9	ATXN7 (ENSXMAG00000002005) #10	psmd6 (ENSXMAG00000001995) #11	slc2a9l1 (ENSXMAG00000001965)	ENSXMAG00000027570	prickle2b (ENSXMAG00000001960) #13	ADAMTS9 (ENSXMAG00000008746) #14	magi1b (ENSXMAG00000000336) #15	slc25a26 (ENSXMAG00000004145) #17	LRIG1 (ENSXMAG00000004120) #19	kbtbd8 (ENSXMAG00000023748) #22	ENSXMAG00000006854	suclg2 (ENSXMAG00000010534) #23	TAFA1 (ENSXMAG00000010521)	tafa4b (ENSXMAG00000028946)	EOGT (ENSXMAG00000010501) #26	tmf1 (ENSXMAG00000010496) #27	uba3 (ENSXMAG00000010468) #28	ENSXMAG00000022847	PRKCD (ENSXMAG00000010429)	SFMBT1 (ENSXMAG00000010399)	stimate (ENSXMAG00000026864)	itih3a.1 (ENSXMAG00000010303)	gata2a (ENSXMAG00000028204)	rpn1 (ENSXMAG00000018896)	rab7a (ENSXMAG00000023285)
Oryzias	ANCESTRAL SPECIES	1	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g.d	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000156315.e.b	ENSGT00390000009630
Oryzias_b	ANCESTRAL SPECIES	3	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g.d	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000156315.e.b	ENSGT00390000009630
Indian medaka	MODERN SPECIES	8	TMEM128 (ENSOMEG00000002915)	zbtb49 (ENSOMEG00000002926)	LYAR (ENSOMEG00000000062)	SYNPR (ENSOMEG00000002964)	mxb (ENSOMEG00000005098)	thoc7 (ENSOMEG00000005739) #9	ENSOMEG00000008446	ATXN7 (ENSOMEG00000009422) #10	psmd6 (ENSOMEG00000009462) #11	slc2a9l1 (ENSOMEG00000009496)	prickle2b (ENSOMEG00000009562) #13	ADAMTS9 (ENSOMEG00000009684) #14	magi1b (ENSOMEG00000009890) #15	slc25a26 (ENSOMEG00000009973) #17	LRIG1 (ENSOMEG00000010010) #19	kbtbd8 (ENSOMEG00000010033) #22	ENSOMEG00000010045	suclg2 (ENSOMEG00000010077) #23	TAFA1 (ENSOMEG00000010112)	tafa4b (ENSOMEG00000010127)	EOGT (ENSOMEG00000010140) #26	tmf1 (ENSOMEG00000010214) #27	uba3 (ENSOMEG00000010249) #28	ENSOMEG00000010289	PRKCD (ENSOMEG00000010377)	SFMBT1 (ENSOMEG00000010503)	stimate (ENSOMEG00000010589)	mustn1b (ENSOMEG00000010596)	itih3a.1 (ENSOMEG00000010716)	gata2a (ENSOMEG00000000819)	rpn1 (ENSOMEG00000010845)
Javanese ricefish	MODERN SPECIES	19	zbtb49 (ENSOJAG00000003194)	LYAR (ENSOJAG00000003213)	ENSOJAG00000003303	SYNPR (ENSOJAG00000003311)	mxb (ENSOJAG00000003398)	thoc7 (ENSOJAG00000004065) #9	ATXN7 (ENSOJAG00000004116) #10	psmd6 (ENSOJAG00000004152) #11	slc2a9l1 (ENSOJAG00000004230)	prickle2b (ENSOJAG00000004320) #13	ADAMTS9 (ENSOJAG00000004664) #14	magi1b (ENSOJAG00000006252) #15	ENSOJAG00000006805	slc25a26 (ENSOJAG00000006839) #17	LRIG1 (ENSOJAG00000006895) #19	kbtbd8 (ENSOJAG00000007096) #22	ENSOJAG00000007144	SUCLG2 (ENSOJAG00000007219) #23	TAFA1 (ENSOJAG00000008093)	EOGT (ENSOJAG00000008117) #26	tmf1 (ENSOJAG00000008296) #27	uba3 (ENSOJAG00000008862) #28	ENSOJAG00000009067	PRKCD (ENSOJAG00000009178)	SFMBT1 (ENSOJAG00000010061)	stimate (ENSOJAG00000010232)	mustn1b (ENSOJAG00000010248)	itih3a.1 (ENSOJAG00000010338)	gata2a (ENSOJAG00000010852)	rpn1 (ENSOJAG00000011032)	ora1 (ENSOJAG00000011398)
Oryzias_a	ANCESTRAL SPECIES	5	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g.d	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000156315.e.b	ENSGT00390000009630
Japanese Medaka HdrR	MODERN SPECIES	19	ENSORLG00000027268	SYNPR (ENSORLG00000008244)	mxb (ENSORLG00000015481)	ENSORLG00000023387	ENSORLG00000008233	thoc7 (ENSORLG00000008192) #9	ENSORLG00000024342	ATXN7 (ENSORLG00000008174) #10	psmd6 (ENSORLG00000008157) #11	slc2a9l1 (ENSORLG00000008143)	prickle2b (ENSORLG00000008127) #13	ADAMTS9 (ENSORLG00000008082) #14	magi1b (ENSORLG00000008073) #15	slc25a26 (ENSORLG00000008045) #17	LRIG1 (ENSORLG00000024221) #19	kbtbd8 (ENSORLG00000008029) #22	ENSORLG00000008023	suclg2 (ENSORLG00000008000) #23	TAFA1 (ENSORLG00000007990)	tafa4b (ENSORLG00000007985)	EOGT (ENSORLG00000007980) #26	tmf1 (ENSORLG00000007962) #27	uba3 (ENSORLG00000007945) #28	ENSORLG00000007888	ENSORLG00000007871	SFMBT1 (ENSORLG00000007813)	stimate (ENSORLG00000007776)	mustn1b (ENSORLG00000007763)	ENSORLG00000026650	itih3a.1 (ENSORLG00000007760)	gata2a (ENSORLG00000007736)
Chinese medaka	MODERN SPECIES	957	OTOP1 (ENSOSIG00000021147)	TMEM128 (ENSOSIG00000021146)	lyar (ENSOSIG00000021143)	zbtb49 (ENSOSIG00000021141)	ENSOSIG00000021138	thoc7 (ENSOSIG00000021130) #9	ATXN7 (ENSOSIG00000021124) #10	psmd6 (ENSOSIG00000021116) #11	slc2a9l1 (ENSOSIG00000021110)	prickle2b (ENSOSIG00000021106) #13	ADAMTS9 (ENSOSIG00000021064) #14	ENSOSIG00000021037	magi1b (ENSOSIG00000021023) #15	slc25a26 (ENSOSIG00000020990) #17	LRIG1 (ENSOSIG00000020972) #19	kbtbd8 (ENSOSIG00000020959) #22	ENSOSIG00000020958	suclg2 (ENSOSIG00000020933) #23	ENSOSIG00000020915	tafa4b (ENSOSIG00000020912)	EOGT (ENSOSIG00000020904) #26	tmf1 (ENSOSIG00000020881) #27	uba3 (ENSOSIG00000020806) #28	ENSOSIG00000020796	PRKCD (ENSOSIG00000020168)	SFMBT1 (ENSOSIG00000020118)	stimate (ENSOSIG00000020106)	mustn1b (ENSOSIG00000020103)	itih3a.1 (ENSOSIG00000020024)	gata2a (ENSOSIG00000020004)	rpn1 (ENSOSIG00000020002)
Percomorphaceae_C	ANCESTRAL SPECIES	1	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT01100000263491.a.b.a.a.a.a.b.t	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000154554.a.k.b	ENSGT00940000156315.e.b
Eupercaria	ANCESTRAL SPECIES		ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000154554.a.k.b	ENSGT00940000156315.e.b
Tetraodontidae	ANCESTRAL SPECIES	1	ENSGT00940000154089.a.c	ENSGT00940000166464	ENSGT00390000013132.b.a	ENSGT00390000003721.d.a.g.a	ENSGT00940000156310.p	ENSGT00940000164201.c.a	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000154554.a.k.b	ENSGT00940000156315.e.b	ENSGT00390000009630	ENSGT00940000155864.a.b
Fugu	MODERN SPECIES	10	mapkapk3 (ENSTRUG00000010458)	ENSTRUG00000010374	chchd4a (ENSTRUG00000025793)	SEC61A1 (ENSTRUG00000010155)	ip6k2a (ENSTRUG00000020006)	mxa (ENSTRUG00000009739)	thoc7 (ENSTRUG00000029292) #9	ATXN7 (ENSTRUG00000009469) #10	psmd6 (ENSTRUG00000009312) #11	slc2a9l1 (ENSTRUG00000008778)	prickle2b (ENSTRUG00000008566) #13	ADAMTS9 (ENSTRUG00000008084) #14	magi1b (ENSTRUG00000007355) #15	slc25a26 (ENSTRUG00000007169) #17	LRIG1 (ENSTRUG00000006913) #19	kbtbd8 (ENSTRUG00000006769) #22	ENSTRUG00000006560	suclg2 (ENSTRUG00000006212) #23	TAFA1 (ENSTRUG00000006186)	tafa4b (ENSTRUG00000032427)	EOGT (ENSTRUG00000006076) #26	tmf1 (ENSTRUG00000005884) #27	ENSTRUG00000020470	PRKCD (ENSTRUG00000005119)	SFMBT1 (ENSTRUG00000004422)	stimate (ENSTRUG00000023269)	mustn1b (ENSTRUG00000033232)	ITIH3 (ENSTRUG00000002488)	ITIH3 (ENSTRUG00000002666)	ENSTRUG00000013337	gata2a (ENSTRUG00000013693)
Tetraodon	MODERN SPECIES	2	pfkfb4a (ENSTNIG00000007096)	mapkapk3 (ENSTNIG00000007097)	chchd4a (ENSTNIG00000007098)	SEC61A1 (ENSTNIG00000007099)	ip6k2a (ENSTNIG00000007100)	MX1 (ENSTNIG00000006682)	thoc7 (ENSTNIG00000006681) #9	ATXN7 (ENSTNIG00000011140) #10	psmd6 (ENSTNIG00000011139) #11	slc2a9l1 (ENSTNIG00000011138)	prickle2b (ENSTNIG00000011137) #13	ADAMTS9 (ENSTNIG00000011136) #14	magi1b (ENSTNIG00000011135) #15	slc25a26 (ENSTNIG00000011134) #17	LRIG1 (ENSTNIG00000011133) #19	kbtbd8 (ENSTNIG00000011132) #22	ENSTNIG00000011131	suclg2 (ENSTNIG00000011130) #23	ENSTNIG00000011129	tafa4b (ENSTNIG00000011128)	EOGT (ENSTNIG00000011127) #26	tmf1 (ENSTNIG00000011126) #27	ENSTNIG00000011125	ENSTNIG00000011124	FGD5 (ENSTNIG00000011123)	PRKCD (ENSTNIG00000011122)	SFMBT1 (ENSTNIG00000011121)	ENSTNIG00000011120	ENSTNIG00000000590	ITIH3 (ENSTNIG00000011119)	ENSTNIG00000011118
Eupecaria_A	ANCESTRAL SPECIES		ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000154554.a.k.b	ENSGT00940000156315.e.b
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	54				ENSLBEG00000025489	ENSLBEG00000025564	mxa (ENSLBEG00000025587)	thoc7 (ENSLBEG00000025612) #9	ATXN7 (ENSLBEG00000025644) #10	psmd6 (ENSLBEG00000025681) #11	slc2a9l1 (ENSLBEG00000025704)	prickle2b (ENSLBEG00000025745) #13	ADAMTS9 (ENSLBEG00000025778) #14	magi1b (ENSLBEG00000025837) #15	slc25a26 (ENSLBEG00000025867) #17	LRIG1 (ENSLBEG00000025883) #19	kbtbd8 (ENSLBEG00000025909) #22	ENSLBEG00000025920	suclg2 (ENSLBEG00000025933) #23	ENSLBEG00000025959	TAFA1 (ENSLBEG00000025996)	tafa4b (ENSLBEG00000026034)	EOGT (ENSLBEG00000026059) #26	tmf1 (ENSLBEG00000026101) #27	uba3 (ENSLBEG00000026172) #28	ENSLBEG00000026230	PRKCD (ENSLBEG00000026270)	SFMBT1 (ENSLBEG00000026332)	stimate (ENSLBEG00000026380)	mustn1b (ENSLBEG00000026395)	ITIH3 (ENSLBEG00000026409)	ENSLBEG00000026440
Ballan wrasse	MODERN SPECIES	3222																ENSLBEG00000015559 #22
Eupecaria_B	ANCESTRAL SPECIES	2	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000154554.a.k.b	ENSGT00940000156315.e.b
Eupecaria_C	ANCESTRAL SPECIES		ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000154554.a.k.b	ENSGT00940000156315.e.b
Gilthead seabream	MODERN SPECIES	20	TMEM128 (ENSSAUG00010006699)	lyar (ENSSAUG00010006700)	zbtb49 (ENSSAUG00010006703)	SYNPR (ENSSAUG00010006707)	ENSSAUG00010006708	thoc7 (ENSSAUG00010006710) #9	Mx1 (ENSSAUG00010006718)	ATXN7 (ENSSAUG00010006989) #10	psmd6 (ENSSAUG00010006993) #11	slc2a9l1 (ENSSAUG00010007003)	prickle2b (ENSSAUG00010007008) #13	ADAMTS9 (ENSSAUG00010007036) #14	magi1b (ENSSAUG00010007220) #15	slc25a26 (ENSSAUG00010007221) #17	LRIG1 (ENSSAUG00010007230) #19	kbtbd8 (ENSSAUG00010007914) #22	ENSSAUG00010007915	suclg2 (ENSSAUG00010007929) #23	TAFA1 (ENSSAUG00010008998)	tafa4b (ENSSAUG00010008999)	EOGT (ENSSAUG00010009003) #26	tmf1 (ENSSAUG00010009056) #27	uba3 (ENSSAUG00010009768) #28	ENSSAUG00010009853	PRKCD (ENSSAUG00010009880)	SFMBT1 (ENSSAUG00010010215)	stimate (ENSSAUG00010010324)	mustn1b (ENSSAUG00010010325)	itih3a.1 (ENSSAUG00010010335)	gata2a (ENSSAUG00010010683)	rpn1 (ENSSAUG00010010688)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES		ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000154554.a.k.b	ENSGT00940000156315.e.b
Large yellow croaker	MODERN SPECIES	478	OTOP1 (ENSLCRG00005001980)	TMEM128 (ENSLCRG00005001985)	lyar (ENSLCRG00005001987)	zbtb49 (ENSLCRG00005001990)	SYNPR (ENSLCRG00005001996)	ENSLCRG00005002050	thoc7 (ENSLCRG00005002898) #9	ATXN7 (ENSLCRG00005002904) #10	psmd6 (ENSLCRG00005002914) #11	slc2a9l1 (ENSLCRG00005002927)	prickle2b (ENSLCRG00005002939) #13	ADAMTS9 (ENSLCRG00005002990) #14	magi1b (ENSLCRG00005003976) #15	slc25a26 (ENSLCRG00005004628) #17	LRIG1 (ENSLCRG00005004636) #19	kbtbd8 (ENSLCRG00005005261) #22	ENSLCRG00005005262	suclg2 (ENSLCRG00005005270) #23	TAFA1 (ENSLCRG00005006575)	tafa4b (ENSLCRG00005006576)	EOGT (ENSLCRG00005006581) #26	tmf1 (ENSLCRG00005006704) #27	uba3 (ENSLCRG00005008199) #28	ENSLCRG00005009008	ENSLCRG00005009009	PRKCD (ENSLCRG00005009015)	SFMBT1 (ENSLCRG00005009119)	stimate (ENSLCRG00005009125)	mustn1b (ENSLCRG00005009127)	ITIH3 (ENSLCRG00005009178)	ENSLCRG00005012230
European seabass	MODERN SPECIES	10	TMEM128 (ENSDLAG00005027843)	LYAR (ENSDLAG00005030766)	zbtb49 (ENSDLAG00005023551)	ENSDLAG00005023545	ENSDLAG00005023253	ENSDLAG00005016371	thoc7 (ENSDLAG00005023228) #9	PSD6 (ENSDLAG00005023211) #11	slc2a9l1 (ENSDLAG00005023203)	ATXN7 (ENSDLAG00005023222) #10	prickle2b (ENSDLAG00005023200) #13	ADAMTS9 (ENSDLAG00005022620) #14	magi1b (ENSDLAG00005022108) #15	slc25a26 (ENSDLAG00005022064) #17	LRIG1 (ENSDLAG00005021860) #19	KBTBD8 (ENSDLAG00005021838) #22	ENSDLAG00005021791	suclg2 (ENSDLAG00005021457) #23	TAFA1 (ENSDLAG00005021432)	tafa4b (ENSDLAG00005021428)	EOGT (ENSDLAG00005021344) #26	tmf1 (ENSDLAG00005021112) #27	uba3 (ENSDLAG00005020948) #28	ENSDLAG00005020928	ENSDLAG00005020646	ENSDLAG00005027702	ENSDLAG00005031831	ENSDLAG00005020549	ENSDLAG00005020411	GATA2 (ENSDLAG00005020389)	ENSDLAG00005020251
Perciformes	ANCESTRAL SPECIES		ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750.d	ENSGT01030000234637.b.d.a.a	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000154554.a.k.b	ENSGT00940000156315.e.b
Perciformes_a	ANCESTRAL SPECIES	5	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750.d	ENSGT01030000234637.b.d.a.a	ENSGT00940000155686	ENSGT00940000164201.c.a	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000156315.e.b	ENSGT00390000009630
Channel bull blenny	MODERN SPECIES	19	ENSCGOG00000001086	ENSCGOG00000001084	SYNPR (ENSCGOG00000001068)	ENSCGOG00000001065	mxa (ENSCGOG00000000943)	thoc7 (ENSCGOG00000000925) #9	ENSCGOG00000000923 #10	ENSCGOG00000000922 #10	psmd6 (ENSCGOG00000000886) #11	slc2a9l1 (ENSCGOG00000000879)	prickle2b (ENSCGOG00000000875) #13	ADAMTS9 (ENSCGOG00000000708) #14	magi1b (ENSCGOG00000000530) #15	slc25a26 (ENSCGOG00000019976) #17	LRIG1 (ENSCGOG00000019814) #19	kbtbd8 (ENSCGOG00000019810) #22	ENSCGOG00000019807	suclg2 (ENSCGOG00000019800) #23	TAFA1 (ENSCGOG00000019795)	tafa4b (ENSCGOG00000019793)	EOGT (ENSCGOG00000019748) #26	tmf1 (ENSCGOG00000019726) #27	uba3 (ENSCGOG00000019237) #28	ENSCGOG00000019221	PRKCD (ENSCGOG00000017875)	SFMBT1 (ENSCGOG00000017730)	stimate (ENSCGOG00000017708)	mustn1b (ENSCGOG00000017706)	ENSCGOG00000017701	ITIH3 (ENSCGOG00000017697)	gata2a (ENSCGOG00000017693)
Pike perch	MODERN SPECIES	11	zbtb49 (ENSSLUG00000011538)	ENSSLUG00000011546	SYNPR (ENSSLUG00000011557)	ENSSLUG00000011598	ENSSLUG00000011634	mxa (ENSSLUG00000005077)	thoc7 (ENSSLUG00000005129) #9	ATXN7 (ENSSLUG00000005151) #10	psmd6 (ENSSLUG00000005162) #11	slc2a9l1 (ENSSLUG00000005213)	prickle2b (ENSSLUG00000005258) #13	ADAMTS9 (ENSSLUG00000005372) #14	magi1b (ENSSLUG00000005496) #15	slc25a26 (ENSSLUG00000005509) #17	LRIG1 (ENSSLUG00000005628) #19	kbtbd8 (ENSSLUG00000006665) #22	ENSSLUG00000006678	suclg2 (ENSSLUG00000006766) #23	TAFA1 (ENSSLUG00000007994)	ENSSLUG00000008000	tafa4b (ENSSLUG00000008005)	EOGT (ENSSLUG00000008029) #26	tmf1 (ENSSLUG00000008284) #27	uba3 (ENSSLUG00000008376) #28	ENSSLUG00000009081	PRKCD (ENSSLUG00000009198)	SFMBT1 (ENSSLUG00000010306)	stimate (ENSSLUG00000010332)	mustn1b (ENSSLUG00000010336)	itih3a.1 (ENSSLUG00000010519)	gata2a (ENSSLUG00000014217)
Cottioidei	ANCESTRAL SPECIES		ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750.d	ENSGT01030000234637.b.d.a.a	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000163880	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000154554.a.k.b
Stickleback	MODERN SPECIES	17	lyar (ENSGACG00000009164)	zbtb49 (ENSGACG00000009172)	SYNPR (ENSGACG00000009183)	mxb (ENSGACG00000009188)	MX1 (ENSGACG00000009200)	thoc7 (ENSGACG00000009218) #9	ATXN7 (ENSGACG00000009237) #10	psmd6 (ENSGACG00000009250) #11	slc2a9l1 (ENSGACG00000009268)	slc2a9l1 (ENSGACG00000009292)	prickle2b (ENSGACG00000009306) #13	ADAMTS9 (ENSGACG00000009317) #14	magi1b (ENSGACG00000009341) #15	slc25a26 (ENSGACG00000009348) #17	LRIG1 (ENSGACG00000009360) #19	kbtbd8 (ENSGACG00000009376) #22	ENSGACG00000009380	suclg2 (ENSGACG00000009387) #23	TAFA1 (ENSGACG00000009393)	EOGT (ENSGACG00000009400) #26	tmf1 (ENSGACG00000009434) #27	uba3 (ENSGACG00000009440) #28	ENSGACG00000009496	PRKCD (ENSGACG00000009511)	SFMBT1 (ENSGACG00000009541)	stimate (ENSGACG00000009563)	mustn1b (ENSGACG00000009579)	ENSGACG00000009583	ENSGACG00000009592	ENSGACG00000009596	gata2a (ENSGACG00000009608)
Lumpfish	MODERN SPECIES	20	ENSCLMG00005000519	bhlhe40 (ENSCLMG00005003585)	ENSCLMG00005003609	MX1 (ENSCLMG00005007189)	thoc7 (ENSCLMG00005007730) #9	ATXN7 (ENSCLMG00005007731) #10	psmd6 (ENSCLMG00005007733) #11	slc2a9l1 (ENSCLMG00005007738)	prickle2b (ENSCLMG00005007739) #13	ADAMTS9 (ENSCLMG00005007866) #14	magi1b (ENSCLMG00005007870) #15	slc25a26 (ENSCLMG00005007874) #17	ENSCLMG00005007876	ENSCLMG00005007877	LRIG1 (ENSCLMG00005007878) #19	kbtbd8 (ENSCLMG00005007999) #22	ENSCLMG00005008001	suclg2 (ENSCLMG00005008011) #23	ENSCLMG00005009018	ENSCLMG00005009020	tafa4b (ENSCLMG00005009021)	EOGT (ENSCLMG00005009022) #26	tmf1 (ENSCLMG00005009081) #27	uba3 (ENSCLMG00005009933) #28	FGD5 (ENSCLMG00005009966)	PRKCD (ENSCLMG00005009981)	SFMBT1 (ENSCLMG00005012763)	stimate (ENSCLMG00005012771)	mustn1b (ENSCLMG00005012780)	ITIH3 (ENSCLMG00005012785)	ENSCLMG00005013586
Percomorphaceae_D	ANCESTRAL SPECIES	3	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT01100000263491.a.b.a.a.a.a.b.t	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000154554.a.k.b	ENSGT00940000156315.e.b
Anabantaria	ANCESTRAL SPECIES		ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT01100000263491.a.b.a.a.a.a.b.t	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000154554.a.k.b	ENSGT00940000156315.e.b
Anabantoidei	ANCESTRAL SPECIES	1	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT01100000263491.a.b.a.a.a.a.b.t	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000154554.a.k.b	ENSGT00940000156315.e.b
Climbing perch	MODERN SPECIES	18	OTOP1 (ENSATEG00000023527)	TMEM128 (ENSATEG00000023524)	lyar (ENSATEG00000023521)	SYNPR (ENSATEG00000023510)	zbtb49 (ENSATEG00000023519)	ENSATEG00000018869	thoc7 (ENSATEG00000018422) #9	ATXN7 (ENSATEG00000018399) #10	psmd6 (ENSATEG00000018373) #11	slc2a9l1 (ENSATEG00000018337)	prickle2b (ENSATEG00000018253) #13	ADAMTS9 (ENSATEG00000018196) #14	magi1b (ENSATEG00000018063) #15	slc25a26 (ENSATEG00000018010) #17	LRIG1 (ENSATEG00000017968) #19	kbtbd8 (ENSATEG00000017944) #22	ENSATEG00000017919	suclg2 (ENSATEG00000017907) #23	TAFA1 (ENSATEG00000017883)	tafa4b (ENSATEG00000017871)	EOGT (ENSATEG00000017825) #26	tmf1 (ENSATEG00000017737) #27	uba3 (ENSATEG00000017630) #28	ENSATEG00000017594	ENSATEG00000017519	SFMBT1 (ENSATEG00000017482)	stimate (ENSATEG00000017445)	mustn1b (ENSATEG00000017431)	ENSATEG00000017410	ENSATEG00000028492	ENSATEG00000026725
Siamese fighting fish	MODERN SPECIES	16			ENSBSLG00000004672	ENSBSLG00000004676	MX1 (ENSBSLG00000000726)	thoc7 (ENSBSLG00000000951) #9	ATXN7 (ENSBSLG00000000957) #10	psmd6 (ENSBSLG00000000958) #11	slc2a9l1 (ENSBSLG00000000960)	prickle2b (ENSBSLG00000001200) #13	ADAMTS9 (ENSBSLG00000001304) #14	magi1b (ENSBSLG00000001468) #15	ENSBSLG00000001535	slc25a26 (ENSBSLG00000001549) #17	LRIG1 (ENSBSLG00000001608) #19	kbtbd8 (ENSBSLG00000001822) #22	ENSBSLG00000002129	suclg2 (ENSBSLG00000002390) #23	TAFA1 (ENSBSLG00000002902)	tafa4b (ENSBSLG00000002908)	EOGT (ENSBSLG00000002919) #26	tmf1 (ENSBSLG00000003020) #27	uba3 (ENSBSLG00000003082) #28	ENSBSLG00000003107	FGD5 (ENSBSLG00000003607)	PRKCD (ENSBSLG00000003954)	SFMBT1 (ENSBSLG00000004995)	stimate (ENSBSLG00000005839)	mustn1b (ENSBSLG00000005853)	itih3a.1 (ENSBSLG00000005866)	gata2a (ENSBSLG00000006314)
Zig-zag eel	MODERN SPECIES	19	lyar (ENSMAMG00000024606)	zbtb49 (ENSMAMG00000019729)	SYNPR (ENSMAMG00000025832)	ENSMAMG00000024806	ENSMAMG00000019747	ENSMAMG00000019780	thoc7 (ENSMAMG00000019803) #9	ATXN7 (ENSMAMG00000019815) #10	psmd6 (ENSMAMG00000019820) #11	slc2a9l1 (ENSMAMG00000019837)	prickle2b (ENSMAMG00000019865) #13	ADAMTS9 (ENSMAMG00000019879) #14	magi1b (ENSMAMG00000019949) #15	slc25a26 (ENSMAMG00000019983) #17	LRIG1 (ENSMAMG00000020003) #19	kbtbd8 (ENSMAMG00000020018) #22	ENSMAMG00000020029	suclg2 (ENSMAMG00000020040) #23	TAFA1 (ENSMAMG00000020067)	tafa4b (ENSMAMG00000020075)	EOGT (ENSMAMG00000020081) #26	tmf1 (ENSMAMG00000020093) #27	uba3 (ENSMAMG00000020130) #28	ENSMAMG00000020151	ENSMAMG00000020157	SFMBT1 (ENSMAMG00000020171)	stimate (ENSMAMG00000020190)	mustn1b (ENSMAMG00000020204)	ENSMAMG00000020218	GATA2 (ENSMAMG00000020223)	ENSMAMG00000020229
Carangaria	ANCESTRAL SPECIES	3	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000154554.a.k.b	ENSGT00940000156315.e.b
Carangaria_A	ANCESTRAL SPECIES	7	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT00940000164201.c.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000154554.a.k.b	ENSGT00940000156315.e.b
Seriola	ANCESTRAL SPECIES	10	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT01100000263491.a.b.a.a.a.a.b.t	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00970000193630.d	ENSGT00940000163880	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000154554.a.k.b
Greater amberjack	MODERN SPECIES	37	lyar (ENSSDUG00000022180)	zbtb49 (ENSSDUG00000022170)	SYNPR (ENSSDUG00000022166)	ENSSDUG00000022162	ENSSDUG00000022155	MX1 (ENSSDUG00000022139)	thoc7 (ENSSDUG00000022145) #9	ATXN7 (ENSSDUG00000022123) #10	psmd6 (ENSSDUG00000022109) #11	slc2a9l1 (ENSSDUG00000022098)	prickle2b (ENSSDUG00000022091) #13	ADAMTS9 (ENSSDUG00000022055) #14	magi1b (ENSSDUG00000021994) #15	slc25a26 (ENSSDUG00000021974) #17	LRIG1 (ENSSDUG00000021962) #19	kbtbd8 (ENSSDUG00000021957) #22	ENSSDUG00000021953	suclg2 (ENSSDUG00000021938) #23	ENSSDUG00000021933	ENSSDUG00000021928	TAFA1 (ENSSDUG00000021920)	tafa4b (ENSSDUG00000021913)	EOGT (ENSSDUG00000021898) #26	tmf1 (ENSSDUG00000021866) #27	uba3 (ENSSDUG00000021827) #28	ENSSDUG00000021815	PRKCD (ENSSDUG00000021793)	SFMBT1 (ENSSDUG00000021756)	stimate (ENSSDUG00000021729)	mustn1b (ENSSDUG00000021718)	ENSSDUG00000021699
Yellowtail amberjack	MODERN SPECIES	3158	zbtb49 (ENSSLDG00000016931)	ENSSLDG00000016913	SYNPR (ENSSLDG00000016896)	ENSSLDG00000016879	ENSSLDG00000014433	MX1 (ENSSLDG00000013748)	thoc7 (ENSSLDG00000013770) #9	ATXN7 (ENSSLDG00000013722) #10	psmd6 (ENSSLDG00000013692) #11	slc2a9l1 (ENSSLDG00000013660)	prickle2b (ENSSLDG00000013632) #13	ADAMTS9 (ENSSLDG00000013574) #14	magi1b (ENSSLDG00000013429) #15	slc25a26 (ENSSLDG00000013343) #17	LRIG1 (ENSSLDG00000013307) #19	kbtbd8 (ENSSLDG00000013287) #22	ENSSLDG00000013272	suclg2 (ENSSLDG00000013251) #23	ENSSLDG00000013234	ENSSLDG00000013213	tafa4b (ENSSLDG00000013185)	EOGT (ENSSLDG00000013143) #26	tmf1 (ENSSLDG00000013065) #27	uba3 (ENSSLDG00000012976) #28	ENSSLDG00000012898	PRKCD (ENSSLDG00000012823)	SFMBT1 (ENSSLDG00000012738)	stimate (ENSSLDG00000012697)	mustn1b (ENSSLDG00000012688)	ITIH3 (ENSSLDG00000012654)	ITIH3 (ENSSLDG00000012548)
Barramundi perch	MODERN SPECIES	93												ENSLCAG00010022765 #14	magi1b (ENSLCAG00010022710) #15	slc25a26 (ENSLCAG00010022697) #17	LRIG1 (ENSLCAG00010022679) #19	kbtbd8 (ENSLCAG00010022674) #22	ENSLCAG00010022647	suclg2 (ENSLCAG00010022632) #23	ENSLCAG00010022625	TAFA1 (ENSLCAG00010022622)	tafa4b (ENSLCAG00010022618)	EOGT (ENSLCAG00010022611) #26	tmf1 (ENSLCAG00010022584) #27	uba3 (ENSLCAG00010022525) #28	ENSLCAG00010022516	ENSLCAG00010022514	PRKCD (ENSLCAG00010022511)	SFMBT1 (ENSLCAG00010022507)	stimate (ENSLCAG00010022505)	mustn1b (ENSLCAG00010022504)	ENSLCAG00010022450
Pleuronectoidei	ANCESTRAL SPECIES	4	ENSGT00940000159350	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT01030000234637.b.d.a.a	ENSGT00940000155686	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a.k.a	ENSGT00940000154554.a.k.b	ENSGT00940000156315.e.b
Turbot	MODERN SPECIES	18	OTOP1 (ENSSMAG00000010308)	TMEM128 (ENSSMAG00000026173)	lyar (ENSSMAG00000010347)	zbtb49 (ENSSMAG00000010370)	SYNPR (ENSSMAG00000026930)	ENSSMAG00000010402	thoc7 (ENSSMAG00000010488) #9	ATXN7 (ENSSMAG00000010499) #10	psmd6 (ENSSMAG00000010518) #11	slc2a9l1 (ENSSMAG00000010535)	prickle2b (ENSSMAG00000010565) #13	ADAMTS9 (ENSSMAG00000010606) #14	magi1b (ENSSMAG00000010678) #15	slc25a26 (ENSSMAG00000010811) #17	LRIG1 (ENSSMAG00000010839) #19	kbtbd8 (ENSSMAG00000010873) #22	ENSSMAG00000010889	suclg2 (ENSSMAG00000010896) #23	TAFA1 (ENSSMAG00000010946)	tafa4b (ENSSMAG00000010986)	EOGT (ENSSMAG00000011001) #26	tmf1 (ENSSMAG00000011077) #27	uba3 (ENSSMAG00000011137) #28	ENSSMAG00000011211	ENSSMAG00000011254	SFMBT1 (ENSSMAG00000011338)	stimate (ENSSMAG00000011411)	mustn1b (ENSSMAG00000011457)	ENSSMAG00000011486	GATA2 (ENSSMAG00000011558)	ENSSMAG00000011567
Tongue sole	MODERN SPECIES	2	MX1 (ENSCSEG00000005684)	uqcc1 (ENSCSEG00000005670)	GDF5 (ENSCSEG00000005659)	sdc4 (ENSCSEG00000005655)	ENSCSEG00000005648	manf (ENSCSEG00000005638)	thoc7 (ENSCSEG00000005643) #9	ATXN7 (ENSCSEG00000005630) #10	psmd6 (ENSCSEG00000005618) #11	slc2a9l1 (ENSCSEG00000005612)	prickle2b (ENSCSEG00000005598) #13	ADAMTS9 (ENSCSEG00000005567) #14	magi1b (ENSCSEG00000005521) #15	slc25a26 (ENSCSEG00000005495) #17	LRIG1 (ENSCSEG00000005477) #19	kbtbd8 (ENSCSEG00000005469) #22	ENSCSEG00000005466	suclg2 (ENSCSEG00000005450) #23	mxra8a (ENSCSEG00000005443)	tada3l (ENSCSEG00000005436)	ARPC4 (ENSCSEG00000005433)	pfkfb4a (ENSCSEG00000005418)	mapkapk3 (ENSCSEG00000005414)	ENSCSEG00000005410	chchd4a (ENSCSEG00000005407)	SEC61A1 (ENSCSEG00000005399)	ip6k2a (ENSCSEG00000005395)	ENSCSEG00000005393	cidec (ENSCSEG00000005380)	ENSCSEG00000005374	uqcrc1 (ENSCSEG00000005366)
Cod	MODERN SPECIES	4	ENSGMOG00000019864	OTOP1 (ENSGMOG00000029771)	TMEM128 (ENSGMOG00000009074)	lyar (ENSGMOG00000009080)	zbtb49 (ENSGMOG00000031795)	SYNPR (ENSGMOG00000009105)	thoc7 (ENSGMOG00000009111) #9	ATXN7 (ENSGMOG00000009122) #10	psmd6 (ENSGMOG00000009151) #11	slc2a9l1 (ENSGMOG00000009166)	prickle2b (ENSGMOG00000009212) #13	ADAMTS9 (ENSGMOG00000009226) #14	magi1b (ENSGMOG00000009267) #15	slc25a26 (ENSGMOG00000009285) #17	LRIG1 (ENSGMOG00000009299) #19	kbtbd8 (ENSGMOG00000002300) #22	ENSGMOG00000002319	suclg2 (ENSGMOG00000002340) #23	TAFA1 (ENSGMOG00000002369)	TAFA4 (ENSGMOG00000030694) #25	EOGT (ENSGMOG00000014301) #26	ENSGMOG00000030700	ENSGMOG00000036171	ENSGMOG00000030108	APCDD1L (ENSGMOG00000016908)	vapb (ENSGMOG00000026642)	ENSGMOG00000029988	rab22a (ENSGMOG00000013070)	ENSGMOG00000013081	ENSGMOG00000013101	ENSGMOG00000027548
Otomorpha	ANCESTRAL SPECIES	142	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a.c.a	ENSGT00940000153456.b.b	ENSGT01030000234637.b.d.a.a	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT01030000234549.a.a.a.a.a.b.b.a.c	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a	ENSGT00940000156315.e.b	ENSGT00390000009630
Otophysi	ANCESTRAL SPECIES	262	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a.c.a	ENSGT00940000153456.b.b	ENSGT01030000234637.b.d.a.a	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT01030000234549.a.a.a.a.a.b.b.a.c	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28
Characiphysae	ANCESTRAL SPECIES	29	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a.c.a	ENSGT00940000153456.b.b	ENSGT01030000234637.b.d.a.a	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT01030000234549.a.a.a.a.a.b.b.a.c	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000155864.a.b	ENSGT00390000018439	ENSGT00390000008947	ENSGT00390000016233.e.b	ENSGT00950000182835.c.d.c.a	ENSGT00940000154089.a.c	ENSGT00940000154791	ENSGT00940000166464
Channel catfish	MODERN SPECIES	13	c21h3orf14 (ENSIPUG00000023563)	fezf2 (ENSIPUG00000023562)	cadps (ENSIPUG00000023525)	nampt2 (ENSIPUG00000023511)	synpr (ENSIPUG00000023506)	thoc7 (ENSIPUG00000023494) #9	atxn7 (ENSIPUG00000023487) #10	psmd6 (ENSIPUG00000023471) #11	slc2a9l1 (ENSIPUG00000023460)	prickle2 (ENSIPUG00000023453) #13	ADAMTS9 (ENSIPUG00000023410) #14	rhol (ENSIPUG00000022715)	magi1 (ENSIPUG00000022691) #15	slc25a26 (ENSIPUG00000022658) #17	LRIG1 (ENSIPUG00000022644) #19	kbtbd8 (ENSIPUG00000022640) #22	ENSIPUG00000022630	ENSIPUG00000022626	suclg2 (ENSIPUG00000022597) #23	TAFA1 (ENSIPUG00000022567)	FAM19A4 (ENSIPUG00000022548) #25	eogt (ENSIPUG00000022513) #26	tmf1 (ENSIPUG00000022461) #27	rab7a (ENSIPUG00000022445)	hmces (ENSIPUG00000022435)	tada3 (ENSIPUG00000022423)	arpc4l (ENSIPUG00000022412)	pfkfb4a (ENSIPUG00000022330)	mapkapk3 (ENSIPUG00000022315)	DNAH1 (ENSIPUG00000022259)	ENSIPUG00000022245
Characiphysae_b	ANCESTRAL SPECIES	26	ENSGT00390000005214	ENSGT00940000160100	ENSGT00590000083094.a.a.c.a	ENSGT00940000153456.b.b	ENSGT01030000234637.b.d.a.a	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT01030000234549.a.a.a.a.a.b.b.a.c	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000155864.a.b	ENSGT00390000018439	ENSGT00390000008947	ENSGT00390000016233.e.b	ENSGT00950000182835.c.d.c.a	ENSGT00940000154089.a.c	ENSGT00940000154791	ENSGT00940000166464
Electric eel	MODERN SPECIES	242								ENSEEEG00000011192	ENSEEEG00000011240	SPHK1 (ENSEEEG00000011242)	ENSEEEG00000011244	rhol (ENSEEEG00000011249)	magi1b (ENSEEEG00000011377) #15	slc25a26 (ENSEEEG00000011400) #17	LRIG1 (ENSEEEG00000011403) #19	kbtbd8 (ENSEEEG00000011407) #22	ENSEEEG00000011409	suclg2 (ENSEEEG00000011449) #23	TAFA1 (ENSEEEG00000011454)	tafa4b (ENSEEEG00000011467)	EOGT (ENSEEEG00000011470) #26	tmf1 (ENSEEEG00000011481) #27
Characoidei	ANCESTRAL SPECIES	15	ENSGT00940000160100	ENSGT00590000083094.a.a.c.a	ENSGT00940000153456.b.b	ENSGT01030000234637.b.d.a.a	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173.h	ENSGT00940000166173.g	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT01030000234549.a.a.a.a.a.b.b.a.c	ENSGT00940000155820.a #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000163880	ENSGT00940000159882 #25	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000155864.a.b	ENSGT00390000018439	ENSGT00390000008947	ENSGT00390000016233.e.b	ENSGT00950000182835.c.d.c.a	ENSGT00940000154089.a.c	ENSGT00940000154791	ENSGT00940000166464
Mexicana tetra	MODERN SPECIES	14	aadacl4 (ENSAMXG00000009976)	dhrs3b (ENSAMXG00000011601)	ENSAMXG00000038188	ENSAMXG00000026462	ENSAMXG00000031698	ENSAMXG00000012618	ENSAMXG00000039829	ENSAMXG00000014125	ENSAMXG00000043424	ENSAMXG00000039218	gria2b (ENSAMXG00000031292)	ENSAMXG00000038275	ENSAMXG00000030562	slc25a26 (ENSAMXG00000009195) #17	LRIG1 (ENSAMXG00000009190) #19	kbtbd8 (ENSAMXG00000009186) #22	ENSAMXG00000030907	suclg2 (ENSAMXG00000034435) #23	ENSAMXG00000041504	TAFA4 (ENSAMXG00000042579) #25	EOGT (ENSAMXG00000009177) #26	tmf1 (ENSAMXG00000009172) #27	rab7a (ENSAMXG00000032027)	hmces (ENSAMXG00000009158)	tada3l (ENSAMXG00000009165)	ENSAMXG00000032789	pfkfb4a (ENSAMXG00000009144)	mapkapk3 (ENSAMXG00000036931)	ENSAMXG00000006588	ENSAMXG00000043148	ENSAMXG00000006617
Red-bellied piranha	MODERN SPECIES	6	thoc7 (ENSPNAG00000003038) #9	ATXN7 (ENSPNAG00000014199) #10	psmd6 (ENSPNAG00000003057) #11	slc2a9l1 (ENSPNAG00000014276)	slc2a9l1 (ENSPNAG00000014307)	slc2a9l1 (ENSPNAG00000014345)	slc2a9l1 (ENSPNAG00000014380)	ENSPNAG00000014405	prickle2b (ENSPNAG00000014453) #13	ADAMTS9 (ENSPNAG00000014476) #14	rhol (ENSPNAG00000014670)	magi1b (ENSPNAG00000014718) #15	slc25a26 (ENSPNAG00000014744) #17	LRIG1 (ENSPNAG00000014762) #19	ENSPNAG00000014775	kbtbd8 (ENSPNAG00000007189) #22	ENSPNAG00000014813	suclg2 (ENSPNAG00000014836) #23	ENSPNAG00000003282	ENSPNAG00000003293	TAFA4 (ENSPNAG00000003303) #25	EOGT (ENSPNAG00000006724) #26	tmf1 (ENSPNAG00000015005) #27	uba3 (ENSPNAG00000015103) #28	rab7a (ENSPNAG00000015164)	hmces (ENSPNAG00000005410)	tada3l (ENSPNAG00000015228)	ENSPNAG00000015281	pfkfb4a (ENSPNAG00000015324)	mapkapk3 (ENSPNAG00000015721)	DNAH1 (ENSPNAG00000015978)
Cyprinoidei	ANCESTRAL SPECIES	23											ENSGT00390000008947	ENSGT00390000018439	ENSGT00940000155864.a.b	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157392.o.b	ENSGT00530000063868.a.b	ENSGT00940000158436	ENSGT00940000155241.d	ENSGT00730000111360.b	ENSGT01030000234812	ENSGT00940000155189.pb.a	ENSGT00940000153920.a.b.b	ENSGT00940000153920.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	374		ENSGT00940000161734.m.b	ENSGT00940000159676.a.a	ENSGT00940000156299.ab	ENSGT00390000015332.b	ENSGT00940000155789.i	ENSGT01030000234598.a.b.b	ENSGT00940000153421.a.a.b.a	ENSGT00950000183039.B.b.c.b	ENSGT00390000016233.f.a.b	ENSGT00390000008947.d	ENSGT00390000018439.b	ENSGT00940000155864.a.b.g	ENSGT00550000074950.c #17	ENSGT00940000158502.d #19	ENSGT00940000158653.q #22	ENSGT00390000010170.a.a.c #23	ENSGT00940000162607.b.b	ENSGT00940000155644.b.a.a.a	ENSGT00940000156493.d #26	ENSGT00390000010697.d #27	ENSGT00550000074831.k.b #28	ENSGT00940000157392.o.b.c	ENSGT00530000063868.a.b.d	ENSGT00940000158436	ENSGT00940000155241.d.d	ENSGT00730000111360.b.b	ENSGT00940000155241.d.c	ENSGT00730000111360.b.a	ENSGT01030000234812.d	ENSGT00940000155189.pb.a.d.b
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	2	hmces (ENSCARG00000067270)	tada3l (ENSCARG00000067281)	arpc4l (ENSCARG00000067293)	ENSCARG00000067305	tbl1xr1a (ENSCARG00000067314)	tada3l (ENSCARG00000067338)	arpc4l (ENSCARG00000067348)	ENSCARG00000067366	lgsn (ENSCARG00000067372)	myom2a (ENSCARG00000067424)	LY75 (ENSCARG00000067714)	ENSCARG00000068225	ITGB6 (ENSCARG00000068311)	nlgn1 (ENSCARG00000068331)	ENSCARG00000068341	kbtbd8 (ENSCARG00000068362) #22	suclg2 (ENSCARG00000068395) #23	TAFA1 (ENSCARG00000068763)	tafa4b (ENSCARG00000068766)	EOGT (ENSCARG00000001980) #26	tmf1 (ENSCARG00000002265) #27	uba3 (ENSCARG00000002838) #28	cishb (ENSCARG00000003156)	twf2b (ENSCARG00000003166)	rpusd4 (ENSCARG00000003191)	qrich1 (ENSCARG00000003204)	ENSCARG00000003209	ENSCARG00000003275	fezf2 (ENSCARG00000004002)	ENSCARG00000004023	ENSCARG00000004046
Goldfish	MODERN SPECIES	2734																kbtbd8 (ENSCARG00000068250) #22
Cyprininae_a	ANCESTRAL SPECIES	3	ENSGT00940000156972.d.d	ENSGT00940000161734.m.b	ENSGT00940000159676.a.a	ENSGT00940000156299.ab	ENSGT00390000015332.b	ENSGT00940000155789.i	ENSGT01030000234598.a.b.b	ENSGT00940000153421.a.a.b.a	ENSGT00950000183039.B.b.c.b	ENSGT00390000016233.f.a.b	ENSGT00390000008947.d	ENSGT00390000018439.b	ENSGT00940000155864.a.b.g	ENSGT00550000074950.c #17	ENSGT00940000158502.d #19	ENSGT00940000158653.q #22	ENSGT00390000010170.a.a.c #23	ENSGT00940000162607.b.b	ENSGT00940000155644.b.a.a.a	ENSGT00940000156493.d #26	ENSGT00390000010697.d #27	ENSGT00550000074831.k.b #28	ENSGT00940000157392.o.b.c	ENSGT00530000063868.a.b.d	ENSGT00940000158436	ENSGT00940000155241.d.c	ENSGT00730000111360.b.a	ENSGT01030000234812.d	ENSGT00940000155189.pb.a.d.b	ENSGT00940000163969.A.c.b	ENSGT00940000153920.b.f
Golden-line barbel	MODERN SPECIES	280						ENSSGRG00000052091	tbl1xr1a (ENSSGRG00000052100)	ENSSGRG00000052530	arpc4l (ENSSGRG00000052535)	tada3l (ENSSGRG00000052536)	ENSSGRG00000052537	hmces (ENSSGRG00000052539)	rab7a (ENSSGRG00000052540)	slc25a26 (ENSSGRG00000052541) #17	LRIG1 (ENSSGRG00000052543) #19	kbtbd8 (ENSSGRG00000052682) #22	suclg2 (ENSSGRG00000052684) #23	TAFA1 (ENSSGRG00000052686)	tafa4b (ENSSGRG00000052687)	EOGT (ENSSGRG00000052689) #26	tmf1 (ENSSGRG00000052691) #27	uba3 (ENSSGRG00000052706) #28	cishb (ENSSGRG00000053026)	twf2b (ENSSGRG00000053028)	rpusd4 (ENSSGRG00000053031)	qrich1 (ENSSGRG00000053035)	tmcc1b (ENSSGRG00000001179)	ENSSGRG00000001196	stimate (ENSSGRG00000001205)	SFMBT1 (ENSSGRG00000001339)	PRKCD (ENSSGRG00000002049)
Common carp reference	MODERN SPECIES	13	ENSCCRG00000058392	b3gnt5a (ENSCCRG00000023764)	ect2 (ENSCCRG00000023632)	SPATA16 (ENSCCRG00000044546)	nlgn1 (ENSCCRG00000071343)	NAALADL2 (ENSCCRG00000014762)	ENSCCRG00000060333	tbl1xr1a (ENSCCRG00000015707)	ENSCCRG00000027217	arpc4l (ENSCCRG00000027232)	tada3l (ENSCCRG00000027248)	hmces (ENSCCRG00000027256)	rab7a (ENSCCRG00000034789)	slc25a26 (ENSCCRG00000081486) #17	LRIG1 (ENSCCRG00000031338) #19	kbtbd8 (ENSCCRG00000036400) #22	suclg2 (ENSCCRG00000064595) #23	TAFA1 (ENSCCRG00000055523)	tafa4b (ENSCCRG00000038567)	EOGT (ENSCCRG00000038591) #26	tmf1 (ENSCCRG00000040682) #27	uba3 (ENSCCRG00000040713) #28	cishb (ENSCCRG00000042469)	twf2b (ENSCCRG00000042478)	rpusd4 (ENSCCRG00000042501)	qrich1 (ENSCCRG00000042531)	ENSCCRG00000060106	tmcc1b (ENSCCRG00000042756)	ENSCCRG00000081254	stimate (ENSCCRG00000049974)	ENSCCRG00000049981
Cyprininae	ANCESTRAL SPECIES	834										ENSGT00390000016233.f.a.a	ENSGT00390000008947.c	ENSGT00390000018439.a	ENSGT00940000155864.a.b.h	ENSGT00550000074950.d #17	ENSGT00940000158502.c #19	ENSGT00940000158653.r #22	ENSGT00390000010170.a.a.d #23
Cyprininae_a	ANCESTRAL SPECIES	85	ENSGT00940000159676.a.b	ENSGT00940000156299.`b	ENSGT00390000015332.a	ENSGT00940000155789.j	ENSGT00940000160807	ENSGT01030000234598.a.b.a	ENSGT01030000234812.c.b	ENSGT00940000153421.a.a.b.b	ENSGT00940000179131	ENSGT00390000016233.f.a.a	ENSGT00390000008947.c	ENSGT00390000018439.a	ENSGT00940000155864.a.b.h	ENSGT00550000074950.d #17	ENSGT00940000158502.c #19	ENSGT00940000158653.r #22	ENSGT00390000010170.a.a.d #23	ENSGT00940000162607.b.a	ENSGT00940000155644.b.a.a.b	ENSGT00940000156493.c #26	ENSGT00390000010697.c #27	ENSGT00550000074831.k.a #28	ENSGT00940000157392.o.b.d	ENSGT00530000063868.a.b.c
Common carp reference	MODERN SPECIES	42	SPATA16 (ENSCCRG00000068267)	ENSCCRG00000074320	nlgn1 (ENSCCRG00000065438)	ENSCCRG00000065771	NAALADL2 (ENSCCRG00000072267)	ENSCCRG00000026908	tbl1xr1a (ENSCCRG00000022725)	ENSCCRG00000027328	arpc4l (ENSCCRG00000027321)	tada3l (ENSCCRG00000027317)	hmces (ENSCCRG00000074021)	rab7a (ENSCCRG00000027229)	slc25a26 (ENSCCRG00000034778) #17	LRIG1 (ENSCCRG00000020318) #19	ENSCCRG00000058315	kbtbd8 (ENSCCRG00000036688) #22	suclg2 (ENSCCRG00000061561) #23	TAFA1 (ENSCCRG00000063403)	tafa4b (ENSCCRG00000042785)	EOGT (ENSCCRG00000042858) #26	tmf1 (ENSCCRG00000046070) #27	uba3 (ENSCCRG00000046141) #28	twf2b (ENSCCRG00000046374)	qrich1 (ENSCCRG00000038540)	ENSCCRG00000038550	ENSCCRG00000038555	tmcc1b (ENSCCRG00000040271)	ENSCCRG00000069966	stimate (ENSCCRG00000040283)	ENSCCRG00000040306	ENSCCRG00000041610
Golden-line barbel	MODERN SPECIES	618							ENSSGRG00000035328	tbl1xr1a (ENSSGRG00000034886)	ENSSGRG00000034868	arpc4l (ENSSGRG00000034855)	tada3l (ENSSGRG00000034854)	hmces (ENSSGRG00000034853)	rab7a (ENSSGRG00000034717)	slc25a26 (ENSSGRG00000034712) #17	LRIG1 (ENSSGRG00000034422) #19	kbtbd8 (ENSSGRG00000034399) #22	ENSSGRG00000034397	suclg2 (ENSSGRG00000034200) #23
Goldfish	MODERN SPECIES	29	rnpep (ENSCARG00000009961)	cyb5r1 (ENSCARG00000009711)	adipor1a (ENSCARG00000009644)	rabif (ENSCARG00000009636)	kdm5ba (ENSCARG00000009486)	ipo9 (ENSCARG00000009059)	shisa4 (ENSCARG00000009025)	LMOD1 (ENSCARG00000009015)	timm17a (ENSCARG00000008998)	sulf2a (ENSCARG00000008362)	arpc4l (ENSCARG00000008278)	tada3l (ENSCARG00000008264)	rab7a (ENSCARG00000008208)	slc25a26 (ENSCARG00000008169) #17	LRIG1 (ENSCARG00000007107) #19	kbtbd8 (ENSCARG00000007045) #22	suclg2 (ENSCARG00000006982) #23	elovl1b (ENSCARG00000006968)	btf3l4 (ENSCARG00000006913)	ptgfr (ENSCARG00000006897)	chrna4b (ENSCARG00000006885)	ENSCARG00000006864	zgpat (ENSCARG00000006852)	txlng (ENSCARG00000006819)	rbb4l (ENSCARG00000006691)	ZRSR2 (ENSCARG00000006659)	ap1s2 (ENSCARG00000006644)	ENSCARG00000006614	ENSCARG00000006514	klhl26 (ENSCARG00000006442)	ddx49 (ENSCARG00000006404)
Zebrafish	MODERN SPECIES	2	rap1ab (ENSDARG00000087346)	PANK4 (ENSDARG00000098453)	draxina (ENSDARG00000058256)	zgc:173544 (ENSDARG00000070714)	agtrap (ENSDARG00000077082)	ctbs (ENSDARG00000100002)	SPATA1 (ENSDARG00000094327)	rpf1 (ENSDARG00000005738)	ENSDARG00000058683	arpc4l (ENSDARG00000058225)	tada3l (ENSDARG00000058220)	hmces (ENSDARG00000077471)	rab7a (ENSDARG00000020497)	slc25a26 (ENSDARG00000058208) #17	LRIG1 (ENSDARG00000075625) #19	kbtbd8 (ENSDARG00000070698) #22	suclg2 (ENSDARG00000044914) #23	tafa4b (ENSDARG00000062471)	EOGT (ENSDARG00000022853) #26	tmf1 (ENSDARG00000057997) #27	uba3 (ENSDARG00000057987) #28	cishb (ENSDARG00000016773)	rpusd4 (ENSDARG00000012674)	twf2b (ENSDARG00000009727)	qrich1 (ENSDARG00000019797)	ENSDARG00000097323	ENSDARG00000077741	zgc:175135 (ENSDARG00000105499)	ENSDARG00000079534	zgc:173545 (ENSDARG00000092026)	ENSDARG00000113425
Clupeiformes	ANCESTRAL SPECIES	27	ENSGT00940000160100	ENSGT00590000083094.a.a.c.a	ENSGT00940000153456.b.b	ENSGT01030000234637.b.d.a.a	ENSGT00390000002873 #9	ENSGT00940000157279 #10	ENSGT00510000046608.B #11	ENSGT00940000166173	ENSGT00940000153629.a.a.b #13	ENSGT00940000156409 #14	ENSGT00940000155820.a.a #15	ENSGT01030000234549.a.a.a.a.a.b.b.a.c	ENSGT00940000155820.a.b #15	ENSGT00550000074950 #17	ENSGT00940000158502 #19	ENSGT00940000158653 #22	ENSGT00940000164303.b.a	ENSGT00390000010170.a.a #23	ENSGT00940000162607.b	ENSGT00940000155644.b.a.a	ENSGT00940000156493 #26	ENSGT00390000010697 #27	ENSGT00550000074831.k #28	ENSGT00940000157922.b	ENSGT00940000155327.g	ENSGT00940000157363	ENSGT00940000153920.b	ENSGT00940000153920.a.b.b	ENSGT00940000154554.a	ENSGT00940000156315.e.b	ENSGT00390000009630
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	3	ip6k2a (ENSDCDG00000016955)	chchd4a (ENSDCDG00000016958)	per3 (ENSDCDG00000016973)	ENSDCDG00000017341	vamp3 (ENSDCDG00000017344)	CAMTA1 (ENSDCDG00000017360)	ENSDCDG00000017368	DNAJC11 (ENSDCDG00000017373)	PHF13 (ENSDCDG00000017397)	fbxo2 (ENSDCDG00000017403)	fbxo2 (ENSDCDG00000017407)	svbp (ENSDCDG00000017411)	ENSDCDG00000017416 #15	slc25a26 (ENSDCDG00000017426) #17	LRIG1 (ENSDCDG00000017464) #19	kbtbd8 (ENSDCDG00000017968) #22	ENSDCDG00000017975	suclg2 (ENSDCDG00000018000) #23	TAFA1 (ENSDCDG00000018057)	tafa4b (ENSDCDG00000018063)	TAFA4 (ENSDCDG00000018068) #25	tmf1 (ENSDCDG00000018095) #27	FGD5 (ENSDCDG00000018174)	tmf1 (ENSDCDG00000018182) #27	FGD5 (ENSDCDG00000018201)	PRKCD (ENSDCDG00000018207)	SFMBT1 (ENSDCDG00000018279)	stimate (ENSDCDG00000018377)	mustn1b (ENSDCDG00000018378)	ENSDCDG00000018380	ENSDCDG00000018382
Denticle herring	MODERN SPECIES	286	PHF13 (ENSDCDG00000016115)	fbxo2 (ENSDCDG00000016118)	fbxo2 (ENSDCDG00000016120)	svbp (ENSDCDG00000016122)	wnt4 (ENSDCDG00000016128)	ENSDCDG00000016194	ap5b1 (ENSDCDG00000016226)	zgc:112255 (ENSDCDG00000016234)	P3H1 (ENSDCDG00000016270)	cldn19 (ENSDCDG00000016449)	nucks1a (ENSDCDG00000016460)	ADAMTS9 (ENSDCDG00000018607) #14	MAGI1 (ENSDCDG00000018682) #15	slc25a26 (ENSDCDG00000018714) #17	LRIG1 (ENSDCDG00000018783) #19	kbtbd8 (ENSDCDG00000019331) #22	ENSDCDG00000019334	MAGI1 (ENSDCDG00000019404) #15	fbxl22 (ENSDCDG00000019482)	ENSDCDG00000019485	ENSDCDG00000019488	ENSDCDG00000019492	ENSDCDG00000019499
Spotted gar	MODERN SPECIES	671	nampt2 (ENSLOCG00000010385)	SYNPR (ENSLOCG00000010367)	SNTN (ENSLOCG00000010361)	ENSLOCG00000010350	thoc7 (ENSLOCG00000010342) #9	ATXN7 (ENSLOCG00000010319) #10	psmd6 (ENSLOCG00000010311) #11	slc2a9l1 (ENSLOCG00000010306)	prickle2b (ENSLOCG00000010297) #13	ADAMTS9 (ENSLOCG00000010273) #14	rho (ENSLOCG00000018246)	magi1b (ENSLOCG00000010248) #15	slc25a26 (ENSLOCG00000010233) #17	LRIG1 (ENSLOCG00000010211) #19	ENSLOCG00000010198	kbtbd8 (ENSLOCG00000010195) #22	slc16a7 (ENSLOCG00000010177)	suclg2 (ENSLOCG00000010157) #23	ENSLOCG00000010154	TAFA4 (ENSLOCG00000010139) #25	EOGT (ENSLOCG00000010125) #26	tmf1 (ENSLOCG00000010119) #27	uba3 (ENSLOCG00000010113) #28	arl6ip5b (ENSLOCG00000010101) #29	LMOD3 (ENSLOCG00000010083) #30	FRMD4B (ENSLOCG00000010065) #31	mitfb (ENSLOCG00000010058) #32	ENSLOCG00000010050	zgc:113054 (ENSLOCG00000010041)	mdfic2 (ENSLOCG00000010038) #33	foxp1b (ENSLOCG00000010009)
Elephant shark	MODERN SPECIES	1523	ptprga (ENSCMIG00000004939)	ENSCMIG00000005665	fezf2 (ENSCMIG00000005676)	ENSCMIG00000005879	nampt2 (ENSCMIG00000006309)	synprb (ENSCMIG00000006509)	ENSCMIG00000006510	thoc7 (ENSCMIG00000006513) #9	ATXN7 (ENSCMIG00000006518) #10	psmd6 (ENSCMIG00000006524) #11	prickle2b (ENSCMIG00000006543) #13	ADAMTS9 (ENSCMIG00000006593) #14	magi1b (ENSCMIG00000006716) #15	slc25a26 (ENSCMIG00000006796) #17	LRIG1 (ENSCMIG00000006843) #19	kbtbd8 (ENSCMIG00000006920) #22	ENSCMIG00000006922	suclg2 (ENSCMIG00000006945) #23	TAFA1 (ENSCMIG00000006997)	TAFA4 (ENSCMIG00000007000) #25	EOGT (ENSCMIG00000007011) #26	tmf1 (ENSCMIG00000007054) #27	uba3 (ENSCMIG00000007150) #28	arl6ip5b (ENSCMIG00000007190) #29	LMOD3 (ENSCMIG00000007192) #30	FRMD4B (ENSCMIG00000007196) #31	mitfb (ENSCMIG00000007207) #32	flot1b (ENSCMIG00000007219)	FOXP1 (ENSCMIG00000007232) #34	CNTN4 (ENSCMIG00000007260)	pdzrn3b (ENSCMIG00000007350)
Cyclostomata	ANCESTRAL SPECIES	1035																ENSGT00940000158653 #22	ENSGT00940000157309.lb
Lamprey	MODERN SPECIES	3148												BAP1 (ENSPMAG00000000365)	ENSPMAG00000000367	dhx34 (ENSPMAG00000000368)	asl (ENSPMAG00000000373)	kbtbd8 (ENSPMAG00000000396) #22	zgc:165507 (ENSPMAG00000000400)	ENSPMAG00000000416
Hagfish	MODERN SPECIES	621	erp44 (ENSEBUG00000010820)	ENSEBUG00000005243	ENSEBUG00000006344	glipr2l (ENSEBUG00000016701)	bbs5 (ENSEBUG00000009203)	ENSEBUG00000002743	ENSEBUG00000014582	ENSEBUG00000010654	CMC1 (ENSEBUG00000007968)	ndufa5 (ENSEBUG00000011275)	ENSEBUG00000015473	ENSEBUG00000001120	ENSEBUG00000002888	ENSEBUG00000009274	ENSEBUG00000009640	kbtbd8 (ENSEBUG00000010000) #22	zgc:86609 (ENSEBUG00000008308)	twf2a (ENSEBUG00000012584)	ENSEBUG00000004186	ENSEBUG00000011409	ENSEBUG00000008671	ENSEBUG00000013190	ENSEBUG00000002207	ENSEBUG00000006551	ENSEBUG00000005945	sh3bp5b (ENSEBUG00000015803)	ENSEBUG00000005045	ndufa12 (ENSEBUG00000009823)	ENSEBUG00000007970	ahcyl2b (ENSEBUG00000012203)	BRK1 (ENSEBUG00000013980)