Gnathostomata	ANCESTRAL SPECIES	29	ENSGT00940000157820.a.b	ENSGT00900000141103	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000008178 #22	ENSGT00940000158659 #25	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000157597	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583	ENSGT00950000183050.b.b.a	ENSGT00940000155337
Euteleostomi	ANCESTRAL SPECIES	5	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00910000147025 #17	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583	ENSGT00950000183050.b.b.a	ENSGT00940000155337	ENSGT00940000154186.a
Sarcopterygii	ANCESTRAL SPECIES	23	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000179750	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00910000147025 #17	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583	ENSGT00950000183050.b.b.a	ENSGT00940000155337	ENSGT00940000154186.a
Tetrapoda	ANCESTRAL SPECIES	15	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00910000147025 #17	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583	ENSGT00950000183050.b.b.a	ENSGT00940000155337	ENSGT00940000154186.a
Amniota	ANCESTRAL SPECIES	12	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00910000147025 #17	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT01030000236025	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583	ENSGT00950000183050.b.b.a
Sauria	ANCESTRAL SPECIES	1	ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000179750	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00910000147025 #17	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT01030000236025	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583	ENSGT00950000183050.b.b.a
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00910000147025 #17	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT01030000236025	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583	ENSGT00950000183050.b.b.a
Archosauria	ANCESTRAL SPECIES	29	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00910000147025 #17	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT01030000236025	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583	ENSGT00950000183050.b.b.a
Aves	ANCESTRAL SPECIES	35	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00910000147025 #17	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT01030000236025	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00940000161448	ENSGT00390000013444.a.b.a	ENSGT00940000155666.c	ENSGT00390000018717.b.a.a	ENSGT00940000160301	ENSGT00940000155428	ENSGT00940000156426	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00940000164908
Neognathae	ANCESTRAL SPECIES	32	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00910000147025 #17	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT01030000236025	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000167185 #23	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00940000161448	ENSGT00390000013444.a.b.a	ENSGT00940000155666.c	ENSGT00390000018717.b.a.a	ENSGT00940000160301	ENSGT00940000155428	ENSGT00940000156426	ENSGT00950000182899.A	ENSGT00940000158656
Galloanserae	ANCESTRAL SPECIES	29	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00910000147025 #17	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT01030000236025	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000167185 #23	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00940000161448	ENSGT00390000013444.a.b.a	ENSGT00940000155666.c	ENSGT00390000018717.b.a.a	ENSGT00940000160301	ENSGT00940000155428	ENSGT00940000156426	ENSGT00950000182899.A	ENSGT00940000158656
Phasianidae	ANCESTRAL SPECIES	29	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00910000147025 #17	ENSGT00940000156983.a.a.g #16	ENSGT00940000156467 #18	ENSGT00940000158732.e #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000167185 #23	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000156568 #28	ENSGT00940000155564 #30	ENSGT00940000154864.b #31	ENSGT00960000190327 #32	ENSGT00390000011103.A #33	ENSGT00390000011433 #34	ENSGT00390000007723 #35	ENSGT00940000156323.p #36	ENSGT00530000063603.B #37	ENSGT00390000003855.a	ENSGT00940000159080
Phasianidae_b	ANCESTRAL SPECIES	28	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a.g #16	ENSGT00910000147025 #17	ENSGT00940000156467 #18	ENSGT00940000158732.e #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000167185 #23	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000156568 #28	ENSGT00940000155564 #30	ENSGT00940000154864.b #31	ENSGT00960000190327 #32	ENSGT00390000011103.A #33	ENSGT00390000011433 #34	ENSGT00390000007723 #35	ENSGT00940000156323.p #36	ENSGT00530000063603.B #37	ENSGT00940000159080	ENSGT00390000003855.a
Chicken	MODERN SPECIES	22	CCDC88A (ENSGALG00010016835) #7	ENSGALG00010019365 #8	CFAP36 (ENSGALG00010016865) #9	ENSGALG00010016882 #10	PNPT1 (ENSGALG00010019166) #11	EFEMP1 (ENSGALG00010018885) #12	CCDC85A (ENSGALG00010018897) #13	VRK2 (ENSGALG00010017065) #14	FANCL (ENSGALG00010017104) #15	BCL11A (ENSGALG00010017162) #16	ENSGALG00010017180 #17	PAPOLG (ENSGALG00010018975) #18	REL (ENSGALG00010019036) #19	PUS10 (ENSGALG00010019062) #20	PEX13 (ENSGALG00010019087) #21	KIAA1841 (ENSGALG00010019135) #22	ENSGALG00010019281 #23	AHSA2 (ENSGALG00010019287) #24	USP34 (ENSGALG00010019302) #25	XPO1 (ENSGALG00010019337) #26	ENSGALG00010016630 #27	RTN4 (ENSGALG00010016706) #28	ENSGALG00010016754 #29	EML6 (ENSGALG00010016762) #30	SPTBN1 (ENSGALG00010016896) #31	ENSGALG00010016906 #32	ACYP2 (ENSGALG00010016916) #33	PSME4 (ENSGALG00010016938) #34	GPR75 (ENSGALG00010019388) #35	TLR15 (ENSGALG00010016958) #36	ERLEC1 (ENSGALG00010016967) #37
Turkey	DUPLICATION
Turkey	MODERN SPECIES	11	ENSMGAG00000021090	KLHDC3 (ENSMGAG00000003684)	PPP2R5D (ENSMGAG00000003651)	ENSMGAG00000003608	ENSMGAG00000003550	ENSMGAG00000003527	ENSMGAG00000003494	CRNKL1 (ENSMGAG00000003452)	ENSMGAG00000003401	RALGAPA2 (ENSMGAG00000003311)	ENSMGAG00000021790	ENSMGAG00000001494 #26	ENSMGAG00000001496 #26	ENSMGAG00000001569 #24	ENSMGAG00000001527 #25	ENSMGAG00000001641 #22	ENSMGAG00000022332 #22	PEX13 (ENSMGAG00000001669) #21	ENSMGAG00000001683 #20	ENSMGAG00000001721 #19	ENSMGAG00000019858 #20	ENSMGAG00000017856 ##19	ENSMGAG00000001741 #18	ENSMGAG00000018153 #18	ENSMGAG00000017689 ##16	ENSMGAG00000013042 #16	ENSMGAG00000021235 #17	ENSMGAG00000001872 #14	ENSMGAG00000001852 #15	ENSMGAG00000001924 #13	ENSMGAG00000001940 #12
Turkey	MODERN SPECIES	11	KLHDC3 (ENSMGAG00000003684)	PPP2R5D (ENSMGAG00000003651)	ENSMGAG00000003608	ENSMGAG00000003550	ENSMGAG00000003527	ENSMGAG00000003494	CRNKL1 (ENSMGAG00000003452)	ENSMGAG00000003401	RALGAPA2 (ENSMGAG00000003311)	ENSMGAG00000021790	ENSMGAG00000001494 #26	ENSMGAG00000001496 #26	ENSMGAG00000001569 #24	ENSMGAG00000001527 #25	ENSMGAG00000001641 #22	ENSMGAG00000022332 #22	PEX13 (ENSMGAG00000001669) #21	ENSMGAG00000001683 #20	ENSMGAG00000001721 #19	ENSMGAG00000019858 #20	ENSMGAG00000017856 ##19	ENSMGAG00000001741 #18	ENSMGAG00000018153 #18	ENSMGAG00000017689 ##16	ENSMGAG00000013042 #16	ENSMGAG00000021235 #17	ENSMGAG00000001872 #14	ENSMGAG00000001852 #15	ENSMGAG00000001924 #13	ENSMGAG00000001940 #12	PNPT1 (ENSMGAG00000001952) #11
Japanese quail	MODERN SPECIES	21	ENSCJPG00005000785	ENSCJPG00005016787 #10	PNPT1 (ENSCJPG00005016570) #11	EFEMP1 (ENSCJPG00005016569) #12	CCDC85A (ENSCJPG00005016565) #13	VRK2 (ENSCJPG00005016556) #14	FANCL (ENSCJPG00005016555) #15	ENSCJPG00005016553	ENSCJPG00005016542 #17	BCL11A (ENSCJPG00005016541) #16	ENSCJPG00005016540	PAPOLG (ENSCJPG00005016294) #18	REL (ENSCJPG00005016290) #19	PUS10 (ENSCJPG00005016289) #20	PEX13 (ENSCJPG00005016288) #21	SANBR (ENSCJPG00005016286) #22	ENSCJPG00005016285 #24	USP34 (ENSCJPG00005016046) #25	XPO1 (ENSCJPG00005016017) #26	ENSCJPG00005016015 #28	EML6 (ENSCJPG00005015980) #30	SPTBN1 (ENSCJPG00005015977) #31	ENSCJPG00005015972 #32	ACYP2 (ENSCJPG00005015971) #33	PSME4 (ENSCJPG00005015921) #34	GPR75 (ENSCJPG00005015919) #35	ENSCJPG00005015918 #36	ERLEC1 (ENSCJPG00005015888) #37	CHAC2 (ENSCJPG00005015883)	ASB3 (ENSCJPG00005015881)	MALL (ENSCJPG00005015879)
Anatidae	ANCESTRAL SPECIES	45	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT01030000236025	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000167185 #23	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00940000161448	ENSGT00390000013444.a.b.a	ENSGT00940000155666.c	ENSGT00390000018717.b.a.a	ENSGT00940000160301	ENSGT00940000155428	ENSGT00940000156426	ENSGT00950000182899.A	ENSGT00940000158656
Pink-footed goose	MODERN SPECIES	255														ENSABRG00000023078	PEX13 (ENSABRG00000023077) #21	SANBR (ENSABRG00000023067) #22	ENSABRG00000023066 #23	ENSABRG00000023065 #24	USP34 (ENSABRG00000023064) #25	XPO1 (ENSABRG00000023063) #26	FAM161A (ENSABRG00000023062)	CCT4 (ENSABRG00000023061)	LRRN4 (ENSABRG00000023059)	FERMT1 (ENSABRG00000023058)	BMP2 (ENSABRG00000023056)
Duck	MODERN SPECIES	21	CCDC88A (ENSAPLG00000004375) #7	CFAP36 (ENSAPLG00000026682) #9	ENSAPLG00000003697 #10	PNPT1 (ENSAPLG00000002885) #11	EFEMP1 (ENSAPLG00000001442) #12	CCDC85A (ENSAPLG00000001419) #13	ENSAPLG00000030764	VRK2 (ENSAPLG00000016420) #14	FANCL (ENSAPLG00000016346) #15	BCL11A (ENSAPLG00000029796) #16	PAPOLG (ENSAPLG00000006813) #18	REL (ENSAPLG00000006795) #19	ENSAPLG00000006347 #20	ENSAPLG00000025470	PEX13 (ENSAPLG00000006240) #21	SANBR (ENSAPLG00000005956) #22	ENSAPLG00000005498 #24	USP34 (ENSAPLG00000004912) #25	ENSAPLG00000004008 #26	ENSAPLG00000030289 #26	FAM161A (ENSAPLG00000003944)	CCT4 (ENSAPLG00000003237)	LRRN4 (ENSAPLG00000003229)	FERMT1 (ENSAPLG00000001367)	BMP2 (ENSAPLG00000000919)	HAO1 (ENSAPLG00000012530)	TMX4 (ENSAPLG00000012866)	PLCB1 (ENSAPLG00000012885)	PLCB4 (ENSAPLG00000013577)	LAMP5 (ENSAPLG00000014591)	ENSAPLG00000017662
Neognathae_b	ANCESTRAL SPECIES	32	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.c.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00910000147025 #17	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000167185 #23	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00940000161448	ENSGT00390000013444.a.b.a	ENSGT00940000155666.c	ENSGT00390000018717.b.a.a	ENSGT00940000160301	ENSGT00940000155428	ENSGT00940000156426	ENSGT00950000182899.A	ENSGT00940000158656
Neognathae_c	ANCESTRAL SPECIES	35	ENSGT00900000141103	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.c.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00940000161448	ENSGT00390000013444.a.b.a	ENSGT00940000155666.c	ENSGT00390000018717.b.a.a	ENSGT00940000160301	ENSGT00940000155428	ENSGT00940000156426	ENSGT00950000182899.A	ENSGT00940000158656	ENSGT00940000164908
Golden eagle	MODERN SPECIES	24	ENSACCG00020005162	CCDC88A (ENSACCG00020005119) #7	CFAP36 (ENSACCG00020005025) #9	ENSACCG00020005011 #10	PNPT1 (ENSACCG00020004991) #11	EFEMP1 (ENSACCG00020004973) #12	CCDC85A (ENSACCG00020004961) #13	VRK2 (ENSACCG00020004949) #14	FANCL (ENSACCG00020004931) #15	BCL11A (ENSACCG00020004914) #16	ENSACCG00020004902	ENSACCG00020004851 #18	REL (ENSACCG00020004805) #19	PUS10 (ENSACCG00020004793) #20	PEX13 (ENSACCG00020008266) #21	SANBR (ENSACCG00020008247) #22	ENSACCG00020008223 #24	USP34 (ENSACCG00020007864) #25	XPO1 (ENSACCG00020007473) #26	FAM161A (ENSACCG00020007457)	CCT4 (ENSACCG00020007431)	LRRN4 (ENSACCG00020007417)	FERMT1 (ENSACCG00020007397)	BMP2 (ENSACCG00020007381)	HAO1 (ENSACCG00020007367)	TMX4 (ENSACCG00020007353)	PLCB1 (ENSACCG00020007287)	ENSACCG00020007251	PLCB4 (ENSACCG00020007217)	LAMP5 (ENSACCG00020007186)	PAK5 (ENSACCG00020007169)
Kakapo	MODERN SPECIES	23	MTIF2 (ENSSHBG00005003200)	ENSSHBG00005003192	CCDC88A (ENSSHBG00005003093) #7	CFAP36 (ENSSHBG00005003041) #9	ENSSHBG00005003024 #10	PNPT1 (ENSSHBG00005003003) #11	EFEMP1 (ENSSHBG00005002989) #12	CCDC85A (ENSSHBG00005002961) #13	VRK2 (ENSSHBG00005002936) #14	FANCL (ENSSHBG00005002913) #15	BCL11A (ENSSHBG00005002890) #16	PAPOLG (ENSSHBG00005002870) #18	REL (ENSSHBG00005002848) #19	PUS10 (ENSSHBG00005002835) #20	PEX13 (ENSSHBG00005002814) #21	SANBR (ENSSHBG00005002786) #22	ENSSHBG00005002752 #24	XPO1 (ENSSHBG00005002738) #26	FAM161A (ENSSHBG00005002710)	CCT4 (ENSSHBG00005002687)	LRRN4 (ENSSHBG00005002673)	FERMT1 (ENSSHBG00005002648)	BMP2 (ENSSHBG00005000508)	HAO1 (ENSSHBG00005000505)	TMX4 (ENSSHBG00005015981)	PLCB1 (ENSSHBG00005015973)	PLCB4 (ENSSHBG00005015924)	LAMP5 (ENSSHBG00005015899)	PAK5 (ENSSHBG00005015892)	ENSSHBG00005015884	ANKEF1 (ENSSHBG00005015878)
Passeriformes	ANCESTRAL SPECIES	31	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.c.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00910000147025 #17	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000167185 #23	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00940000161448	ENSGT00390000013444.a.b.a	ENSGT00940000155666.c	ENSGT00390000018717.b.a.a	ENSGT00940000160301	ENSGT00940000155428	ENSGT00940000156426	ENSGT00950000182899.A	ENSGT00940000158656
Great tit	MODERN SPECIES	22	CCDC88A (ENSPMJG00000014422) #7	CFAP36 (ENSPMJG00000014424) #9	ENSPMJG00000014425 #10	PNPT1 (ENSPMJG00000014426) #11	EFEMP1 (ENSPMJG00000014427) #12	CCDC85A (ENSPMJG00000014428) #13	VRK2 (ENSPMJG00000014436) #14	FANCL (ENSPMJG00000014437) #15	ENSPMJG00000014442	BCL11A (ENSPMJG00000014443) #16	ENSPMJG00000014444	PAPOLG (ENSPMJG00000014445) #18	REL (ENSPMJG00000014636) #19	PUS10 (ENSPMJG00000014637) #20	PEX13 (ENSPMJG00000014639) #21	SANBR (ENSPMJG00000014640) #22	ENSPMJG00000014641 #24	ENSPMJG00000014642	XPO1 (ENSPMJG00000014643) #26	FAM161A (ENSPMJG00000014644)	CCT4 (ENSPMJG00000014645)	LRRN4 (ENSPMJG00000000075)	FERMT1 (ENSPMJG00000000091)	BMP2 (ENSPMJG00000000169)	HAO1 (ENSPMJG00000000202)	TMX4 (ENSPMJG00000000209)	PLCB1 (ENSPMJG00000000324)	PLCB4 (ENSPMJG00000000495)	LAMP5 (ENSPMJG00000000667)	PAK5 (ENSPMJG00000000677)	ENSPMJG00000000701
Passeriformes_d	ANCESTRAL SPECIES	32	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.c.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00910000147025 #17	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000167185 #23	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00940000161448	ENSGT00390000013444.a.b.a	ENSGT00940000155666.c	ENSGT00390000018717.b.a.a	ENSGT00940000160301	ENSGT00940000155428	ENSGT00940000156426	ENSGT00950000182899.A	ENSGT00940000158656
Passeriformes_g	ANCESTRAL SPECIES	37	ENSGT00900000141103	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.c.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000167185 #23	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00940000161448	ENSGT00390000013444.a.b.a	ENSGT00940000155666.c	ENSGT00390000018717.b.a.a	ENSGT00940000160301	ENSGT00940000155428	ENSGT00940000156426	ENSGT00950000182899.A	ENSGT00940000158656
Passeroidea	ANCESTRAL SPECIES	34	ENSGT00900000141103	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.c.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000167185 #23	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00940000161448	ENSGT00390000013444.a.b.a	ENSGT00940000155666.c	ENSGT00390000018717.b.a.a	ENSGT00940000160301	ENSGT00940000155428	ENSGT00940000156426	ENSGT00950000182899.A	ENSGT00940000158656
Common canary	MODERN SPECIES	23	ENSSCAG00000014168	CCDC88A (ENSSCAG00000014138) #7	CFAP36 (ENSSCAG00000014124) #9	ENSSCAG00000014117 #10	PNPT1 (ENSSCAG00000014095) #11	EFEMP1 (ENSSCAG00000014079) #12	CCDC85A (ENSSCAG00000014069) #13	VRK2 (ENSSCAG00000014061) #14	FANCL (ENSSCAG00000014056) #15	ENSSCAG00000014050	BCL11A (ENSSCAG00000014043) #16	PAPOLG (ENSSCAG00000014037) #18	REL (ENSSCAG00000014030) #19	PUS10 (ENSSCAG00000014021) #20	PEX13 (ENSSCAG00000014014) #21	SANBR (ENSSCAG00000014007) #22	ENSSCAG00000014004 #23	ENSSCAG00000013998 #24	USP34 (ENSSCAG00000013613) #25	XPO1 (ENSSCAG00000013488) #26	FAM161A (ENSSCAG00000013480)	CCT4 (ENSSCAG00000013477)	LRRN4 (ENSSCAG00000013475)	FERMT1 (ENSSCAG00000013472)	BMP2 (ENSSCAG00000013470)	HAO1 (ENSSCAG00000013465)	TMX4 (ENSSCAG00000013460)	PLCB1 (ENSSCAG00000012853)	PLCB4 (ENSSCAG00000012730)	LAMP5 (ENSSCAG00000012713)	PAK5 (ENSSCAG00000012709)
Zebra finch	MODERN SPECIES	23	MTIF2 (ENSTGUG00000007064)	ENSTGUG00000007062	CCDC88A (ENSTGUG00000007001) #7	CFAP36 (ENSTGUG00000006976) #9	ENSTGUG00000006962 #10	PNPT1 (ENSTGUG00000006908) #11	EFEMP1 (ENSTGUG00000006870) #12	CCDC85A (ENSTGUG00000006863) #13	VRK2 (ENSTGUG00000006838) #14	FANCL (ENSTGUG00000006799) #15	BCL11A (ENSTGUG00000006790) #16	PAPOLG (ENSTGUG00000006762) #18	REL (ENSTGUG00000006743) #19	PUS10 (ENSTGUG00000006727) #20	ENSTGUG00000006723	SANBR (ENSTGUG00000006710) #22	AHSA2P (ENSTGUG00000026266) #24	USP34 (ENSTGUG00000006553) #25	XPO1 (ENSTGUG00000006512) #26	FAM161A (ENSTGUG00000006509)	CCT4 (ENSTGUG00000006478)	LRRN4 (ENSTGUG00000006475)	FERMT1 (ENSTGUG00000006448)	BMP2 (ENSTGUG00000018981)	HAO1 (ENSTGUG00000006420)	TMX4 (ENSTGUG00000019958)	PLCB1 (ENSTGUG00000006294)	PLCB4 (ENSTGUG00000006214)	LAMP5 (ENSTGUG00000006211)	PAK5 (ENSTGUG00000006182)	ENSTGUG00000006175
Medium ground finch	MODERN SPECIES	44	RTN4 (ENSGFOG00000004434) #28	RPS27A (ENSGFOG00000004423)	ENSGFOG00000004412	CCDC88A (ENSGFOG00000004260) #7	ENSGFOG00000004210 #10	PNPT1 (ENSGFOG00000004186) #11	EFEMP1 (ENSGFOG00000004174) #12	CCDC85A (ENSGFOG00000004151) #13	VRK2 (ENSGFOG00000004135) #14	FANCL (ENSGFOG00000004095) #15	ENSGFOG00000004073 #16	PAPOLG (ENSGFOG00000004051) #18	REL (ENSGFOG00000003734) #19	PUS10 (ENSGFOG00000003695) #20	PEX13 (ENSGFOG00000003677) #21	SANBR (ENSGFOG00000003643) #22	ENSGFOG00000003636 #23	ENSGFOG00000003593 #24	XPO1 (ENSGFOG00000003256) #26	FAM161A (ENSGFOG00000003218)	CCT4 (ENSGFOG00000002763)	LRRN4 (ENSGFOG00000002686)	FERMT1 (ENSGFOG00000002667)	BMP2 (ENSGFOG00000002651)	ENSGFOG00000002625	HAO1 (ENSGFOG00000002607)	PLCB1 (ENSGFOG00000001832)	PLCB4 (ENSGFOG00000001705)	LAMP5 (ENSGFOG00000001679)	PAK5 (ENSGFOG00000001667)	ENSGFOG00000001657
Flycatcher	MODERN SPECIES	21	CCDC88A (ENSFALG00000011240) #7	CFAP36 (ENSFALG00000023619) #9	ENSFALG00000011223 #10	PNPT1 (ENSFALG00000011214) #11	EFEMP1 (ENSFALG00000011207) #12	CCDC85A (ENSFALG00000011197) #13	VRK2 (ENSFALG00000011171) #14	FANCL (ENSFALG00000011139) #15	ENSFALG00000023233	BCL11A (ENSFALG00000011123) #16	ENSFALG00000025162 #17	PAPOLG (ENSFALG00000011079) #18	REL (ENSFALG00000011066) #19	PUS10 (ENSFALG00000011063) #20	PEX13 (ENSFALG00000025219) #21	SANBR (ENSFALG00000011044) #22	ENSFALG00000011014 #24	USP34 (ENSFALG00000010997) #25	XPO1 (ENSFALG00000010989) #26	FAM161A (ENSFALG00000010985)	CCT4 (ENSFALG00000010978)	LRRN4 (ENSFALG00000025370)	ENSFALG00000010970	BMP2 (ENSFALG00000010964)	PLCB1 (ENSFALG00000010955)	ENSFALG00000026862	HAO1 (ENSFALG00000010925)	PLCB4 (ENSFALG00000011105)	LAMP5 (ENSFALG00000011091)	PAK5 (ENSFALG00000011074)	ENSFALG00000024936
African ostrich	MODERN SPECIES	570	ENSSCUG00000011080	SNRPB2 (ENSSCUG00000011093)	OTOR (ENSSCUG00000011095)	PCSK2 (ENSSCUG00000011104)	BFSP1 (ENSSCUG00000011117)	ENSSCUG00000011118	CCDC85A (ENSSCUG00000011119) #13	VRK2 (ENSSCUG00000011123) #14	FANCL (ENSSCUG00000011125) #15	ENSSCUG00000011144 #16	PAPOLG (ENSSCUG00000011148) #18	REL (ENSSCUG00000011150) #19	ENSSCUG00000011153 #20	ENSSCUG00000011155 #20	PEX13 (ENSSCUG00000011156) #21	SANBR (ENSSCUG00000011159) #22	ENSSCUG00000011161 #24	USP34 (ENSSCUG00000011183) #25	XPO1 (ENSSCUG00000011211) #26	FAM161A (ENSSCUG00000011227)	CCT4 (ENSSCUG00000011231)	ENSSCUG00000011237	ENSSCUG00000011239	FERMT1 (ENSSCUG00000011241)	BMP2 (ENSSCUG00000011252)	HAO1 (ENSSCUG00000011268)	TMX4 (ENSSCUG00000011271)	PLCB1 (ENSSCUG00000011274)	PLCB4 (ENSSCUG00000011288)	LAMP5 (ENSSCUG00000011302)	PAK5 (ENSSCUG00000011305)
Australian saltwater crocodile	MODERN SPECIES	60	MTIF2 (ENSCPRG00005013913)	ENSCPRG00005013901	CCDC88A (ENSCPRG00005013865) #7	CFAP36 (ENSCPRG00005013847) #9	ENSCPRG00005013835 #10	PNPT1 (ENSCPRG00005013815) #11	EFEMP1 (ENSCPRG00005013804) #12	CCDC85A (ENSCPRG00005013778) #13	VRK2 (ENSCPRG00005013767) #14	FANCL (ENSCPRG00005013752) #15	BCL11A (ENSCPRG00005013718) #16	PAPOLG (ENSCPRG00005013702) #18	REL (ENSCPRG00005013695) #19	PUS10 (ENSCPRG00005013684) #20	PEX13 (ENSCPRG00005013679) #21	SANBR (ENSCPRG00005013668) #22	ENSCPRG00005013659 #24	USP34 (ENSCPRG00005013436) #25	XPO1 (ENSCPRG00005013231) #26	ENSCPRG00005013195	FAM161A (ENSCPRG00005013180)	CCT4 (ENSCPRG00005013168)	COMMD1 (ENSCPRG00005013164)	TMEM17 (ENSCPRG00005013145)	EHBP1 (ENSCPRG00005013126)	ENSCPRG00005013108	WDPCP (ENSCPRG00005013098)	MDH1 (ENSCPRG00005013087)	UGP2 (ENSCPRG00005013070)	VPS54 (ENSCPRG00005013060)	PELI1 (ENSCPRG00005013051)
Cryptodira	ANCESTRAL SPECIES	49	ENSGT00910000144152.a	ENSGT00900000141103	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000007046.b.a.a	ENSGT00950000182767.b.a.b.b.a	ENSGT00940000156965	ENSGT00390000016976	ENSGT00940000154544	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c
Testudinoidea	ANCESTRAL SPECIES		ENSGT00910000144152.a	ENSGT00900000141103	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000157344.b #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000007046.b.a.a	ENSGT00950000182767.b.a.b.b.a	ENSGT00940000156965	ENSGT00390000016976	ENSGT00940000154544	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c
Emydidae	ANCESTRAL SPECIES	41	ENSGT00900000141103	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00950000185057.B	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000157344.b #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000007046.b.a.a	ENSGT00950000182767.b.a.b.b.a	ENSGT00940000156965	ENSGT00390000016976	ENSGT00940000154544	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c
Three-toed box turtle	MODERN SPECIES	62	CCDC88A (ENSTMTG00000014882) #7	ENSTMTG00000014736	CFAP36 (ENSTMTG00000014715) #9	ENSTMTG00000014685 #10	PNPT1 (ENSTMTG00000014598) #11	EFEMP1 (ENSTMTG00000014569) #12	CCDC85A (ENSTMTG00000014512) #13	VRK2 (ENSTMTG00000014267) #14	FANCL (ENSTMTG00000014230) #15	ENSTMTG00000014208	BCL11A (ENSTMTG00000014200) #16	PAPOLG (ENSTMTG00000014141) #18	REL (ENSTMTG00000014049) #19	PUS10 (ENSTMTG00000013983) #20	PEX13 (ENSTMTG00000013969) #21	SANBR (ENSTMTG00000013882) #22	ENSTMTG00000013867 #24	USP34 (ENSTMTG00000012814) #25	XPO1 (ENSTMTG00000012677) #26	FAM161A (ENSTMTG00000012663)	ENSTMTG00000012654	CCT4 (ENSTMTG00000012621)	SNRPB2 (ENSTMTG00000012597)	OTOR (ENSTMTG00000012579)	PCSK2 (ENSTMTG00000012469)	BFSP1 (ENSTMTG00000012375)	ENSTMTG00000012352	ENSTMTG00000012328	FBXO48 (ENSTMTG00000012318)	PLEK (ENSTMTG00000012307)	CNRIP1 (ENSTMTG00000012284)
painted turtle	MODERN SPECIES	2375						ENSCPBG00000026122	ENSCPBG00000026124	VRK2 (ENSCPBG00000026126) #14	FANCL (ENSCPBG00000026128) #15	ENSCPBG00000026130	BCL11A (ENSCPBG00000026142) #16	PAPOLG (ENSCPBG00000026150) #18	REL (ENSCPBG00000026152) #19	PUS10 (ENSCPBG00000026155) #20	PEX13 (ENSCPBG00000026158) #21	SANBR (ENSCPBG00000026159) #22	ENSCPBG00000026169 #24	ENSCPBG00000026170 #24	USP34 (ENSCPBG00000026178) #25	XPO1 (ENSCPBG00000026239) #26	FAM161A (ENSCPBG00000026249)	CCT4 (ENSCPBG00000026253)	SNRPB2 (ENSCPBG00000026255)	OTOR (ENSCPBG00000026256)
Testudinidae	DUPLICATION
Testudinidae	ANCESTRAL SPECIES	6	ENSGT00910000144152.a	ENSGT00900000141103	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178.c #22	ENSGT00940000157344.a #24	ENSGT00390000008178.d #22	ENSGT00940000157344.b #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000007046.b.a.a	ENSGT00950000182767.b.a.b.b.a	ENSGT00940000156965	ENSGT00390000016976	ENSGT00940000154544	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885
Abingdon island giant tortoise	MODERN SPECIES	2576										ENSCABG00000006659 #16	PAPOLG (ENSCABG00000006660) #18	ENSCABG00000006661	REL (ENSCABG00000006662) #19	PUS10 (ENSCABG00000006676) #20	PEX13 (ENSCABG00000006693) #21	SANBR (ENSCABG00000006696) #22	ENSCABG00000006734 #24
Goode s thornscrub tortoise	MODERN SPECIES	17	ENSGEVG00005002006	ENSGEVG00005002037	CCDC88A (ENSGEVG00005002288) #7	CFAP36 (ENSGEVG00005002807) #9	ENSGEVG00005002841 #10	PNPT1 (ENSGEVG00005002898) #11	EFEMP1 (ENSGEVG00005002929) #12	CCDC85A (ENSGEVG00005002960) #13	VRK2 (ENSGEVG00005002982) #14	FANCL (ENSGEVG00005003009) #15	BCL11A (ENSGEVG00005003042) #16	PAPOLG (ENSGEVG00005003061) #18	REL (ENSGEVG00005003074) #19	PUS10 (ENSGEVG00005003095) #20	PEX13 (ENSGEVG00005003121) #21	ENSGEVG00005003127 #22	ENSGEVG00005003145 #22	ENSGEVG00005003166 #24	USP34 (ENSGEVG00005003276) #25	ENSGEVG00005003515	XPO1 (ENSGEVG00005003539) #26	FAM161A (ENSGEVG00005003560)	CCT4 (ENSGEVG00005003573)	SNRPB2 (ENSGEVG00005003591)	OTOR (ENSGEVG00005003604)	PCSK2 (ENSGEVG00005003616)	BFSP1 (ENSGEVG00005003651)	ENSGEVG00005003685	APLF (ENSGEVG00005003695)	FBXO48 (ENSGEVG00005003719)	PLEK (ENSGEVG00005003733)
Testudinidae	ANCESTRAL SPECIES	6	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178.c #22	ENSGT00940000157344.a #24	ENSGT00390000008178.d #22	ENSGT00940000157344.b #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000007046.b.a.a	ENSGT00950000182767.b.a.b.b.a	ENSGT00940000156965	ENSGT00390000016976	ENSGT00940000154544	ENSGT00390000010591	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c
Goode s thornscrub tortoise	MODERN SPECIES	17	ENSGEVG00005002037	CCDC88A (ENSGEVG00005002288) #7	CFAP36 (ENSGEVG00005002807) #9	ENSGEVG00005002841 #10	PNPT1 (ENSGEVG00005002898) #11	EFEMP1 (ENSGEVG00005002929) #12	CCDC85A (ENSGEVG00005002960) #13	VRK2 (ENSGEVG00005002982) #14	FANCL (ENSGEVG00005003009) #15	BCL11A (ENSGEVG00005003042) #16	PAPOLG (ENSGEVG00005003061) #18	REL (ENSGEVG00005003074) #19	PUS10 (ENSGEVG00005003095) #20	PEX13 (ENSGEVG00005003121) #21	ENSGEVG00005003127 #22	ENSGEVG00005003145 #22	ENSGEVG00005003166 #24	USP34 (ENSGEVG00005003276) #25	ENSGEVG00005003515	XPO1 (ENSGEVG00005003539) #26	FAM161A (ENSGEVG00005003560)	CCT4 (ENSGEVG00005003573)	SNRPB2 (ENSGEVG00005003591)	OTOR (ENSGEVG00005003604)	PCSK2 (ENSGEVG00005003616)	BFSP1 (ENSGEVG00005003651)	ENSGEVG00005003685	APLF (ENSGEVG00005003695)	FBXO48 (ENSGEVG00005003719)	PLEK (ENSGEVG00005003733)	CNRIP1 (ENSGEVG00005003746)
Chinese turtle	MODERN SPECIES	1011	ENSPSIG00000013017	ENSPSIG00000013025	ENSPSIG00000013034 #10	PNPT1 (ENSPSIG00000013120) #11	EFEMP1 (ENSPSIG00000013324) #12	CCDC85A (ENSPSIG00000013466) #13	ENSPSIG00000013487	VRK2 (ENSPSIG00000013499) #14	FANCL (ENSPSIG00000013510) #15	ENSPSIG00000001863	BCL11A (ENSPSIG00000013644) #16	PAPOLG (ENSPSIG00000013663) #18	REL (ENSPSIG00000013860) #19	PUS10 (ENSPSIG00000013924) #20	PEX13 (ENSPSIG00000014046) #21	SANBR (ENSPSIG00000014050) #22	ENSPSIG00000014058 #24	USP34 (ENSPSIG00000014068) #25	XPO1 (ENSPSIG00000014457) #26	FAM161A (ENSPSIG00000014573)	CCT4 (ENSPSIG00000014582)	SNRPB2 (ENSPSIG00000014724)	OTOR (ENSPSIG00000014783)
Lepidosauria	ANCESTRAL SPECIES		ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000179750	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT01030000236025	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26
Episquamata	ANCESTRAL SPECIES		ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000179750	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT01030000236025	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00990000211423	ENSGT01050000246300	ENSGT00940000158680	ENSGT00390000016034	ENSGT00940000153230.B	ENSGT00940000158349	ENSGT00940000159864	ENSGT00940000159097.c	ENSGT00390000014037	ENSGT00940000157818	ENSGT01070000253766.C	ENSGT00450000040279	ENSGT00940000161092
Toxicofera	ANCESTRAL SPECIES		ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000179750	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT01030000236025	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00990000211423	ENSGT01050000246300	ENSGT00940000158680	ENSGT00390000016034	ENSGT00940000153230.B	ENSGT00940000158349	ENSGT00940000159864	ENSGT00940000159097.c	ENSGT00390000014037	ENSGT00940000157818	ENSGT01070000253766.C	ENSGT00450000040279	ENSGT00940000161092
Elapidae	ANCESTRAL SPECIES		ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000179750	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT01030000236025	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00960000190579	ENSGT01050000246300	ENSGT00940000158680	ENSGT00390000016034	ENSGT00940000153230.B	ENSGT00940000158349.b	ENSGT00940000159864	ENSGT00940000159097.c	ENSGT00390000014037	ENSGT00940000157818	ENSGT01040000240952.B	ENSGT01070000253766.C	ENSGT00450000040279
Indian cobra	MODERN SPECIES		ENSNNAG00000002759	CCDC88A (ENSNNAG00000002738) #7	CFAP36 (ENSNNAG00000002728) #9	ENSNNAG00000002696 #10	PNPT1 (ENSNNAG00000002669) #11	EFEMP1 (ENSNNAG00000002658) #12	CCDC85A (ENSNNAG00000002643) #13	VRK2 (ENSNNAG00000002625) #14	FANCL (ENSNNAG00000002617) #15	ENSNNAG00000002607 #16	PAPOLG (ENSNNAG00000002579) #18	ENSNNAG00000002553 #19	ENSNNAG00000002541 #19	PUS10 (ENSNNAG00000002496) #20	PEX13 (ENSNNAG00000002484) #21	SANBR (ENSNNAG00000002474) #22	USP34 (ENSNNAG00000001951) #25	XPO1 (ENSNNAG00000001820) #26	ENSNNAG00000001811	ENSNNAG00000001804	ENSNNAG00000001794	ENSNNAG00000001789	CTSB (ENSNNAG00000001771)	FDFT1 (ENSNNAG00000001754)	NEIL2 (ENSNNAG00000001739)	GATA4 (ENSNNAG00000001728)	BLK (ENSNNAG00000001709)	FAM167A (ENSNNAG00000001698)	ENSNNAG00000001690	ENSNNAG00000001681	MTMR9 (ENSNNAG00000001664)
Elapidae_a	ANCESTRAL SPECIES	2	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000179750	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT01030000236025	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000158659 #25	ENSGT00940000153408.B #26
Acanthophiinae	ANCESTRAL SPECIES	3	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000179750	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT01030000236025	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000158659 #25	ENSGT00940000153408.B #26
Eastern brown snake	MODERN SPECIES	5	MTIF2 (ENSPTXG00000008389)	ENSPTXG00000008391	CCDC88A (ENSPTXG00000008398) #7	CFAP36 (ENSPTXG00000008734) #9	ENSPTXG00000008735 #10	PNPT1 (ENSPTXG00000008740) #11	EFEMP1 (ENSPTXG00000009396) #12	CCDC85A (ENSPTXG00000009398) #13	VRK2 (ENSPTXG00000009399) #14	FANCL (ENSPTXG00000009400) #15	ENSPTXG00000009402 #16	PAPOLG (ENSPTXG00000009404) #18	REL (ENSPTXG00000009405) #19	PUS10 (ENSPTXG00000009406) #20	PEX13 (ENSPTXG00000009407) #21	ENSPTXG00000009408 #22	USP34 (ENSPTXG00000009409) #25	XPO1 (ENSPTXG00000009410) #26
Mainland tiger snake	MODERN SPECIES	85	CFAP36 (ENSNSUG00000015380) #9	ENSNSUG00000015384 #10	PNPT1 (ENSNSUG00000015422) #11	EFEMP1 (ENSNSUG00000015645) #12	ENSNSUG00000015655	CCDC85A (ENSNSUG00000015658) #13	ENSNSUG00000015660	VRK2 (ENSNSUG00000015661) #14	FANCL (ENSNSUG00000015662) #15	ENSNSUG00000015665 #16	PAPOLG (ENSNSUG00000015668) #18	REL (ENSNSUG00000015671) #19	ENSNSUG00000015682 #20	ENSNSUG00000015683	PEX13 (ENSNSUG00000015684) #21	SANBR (ENSNSUG00000015686) #22	USP34 (ENSNSUG00000015689) #25	XPO1 (ENSNSUG00000015814) #26
Blue-lipped sea krait	MODERN SPECIES	9629																SANBR (ENSLLTG00000014030) #22
Lizard	MODERN SPECIES	1135													REL (ENSACAG00000003030) #19	PUS10 (ENSACAG00000002947) #20	PEX13 (ENSACAG00000002926) #21	SANBR (ENSACAG00000002834) #22	ENSACAG00000028963	USP34 (ENSACAG00000002606) #25	XPO1 (ENSACAG00000002501) #26	ENSACAG00000037193
Laterata	ANCESTRAL SPECIES	4	ENSGT00900000141103	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00990000211423	ENSGT01050000246300	ENSGT00940000158680	ENSGT00390000016034	ENSGT00940000153230.B	ENSGT00940000158349	ENSGT00940000159864	ENSGT00940000159097.d	ENSGT00940000159097.c	ENSGT00390000014037	ENSGT00940000157818	ENSGT01070000253766.C	ENSGT00450000040279
Argentine black and white tegu	MODERN SPECIES	7	CFAP36 (ENSSMRG00000014756) #9	ENSSMRG00000014755 #10	PNPT1 (ENSSMRG00000014754) #11	EFEMP1 (ENSSMRG00000014753) #12	CCDC85A (ENSSMRG00000014750) #13	ENSSMRG00000014749	VRK2 (ENSSMRG00000014748) #14	FANCL (ENSSMRG00000014747) #15	ENSSMRG00000014742 #16	ENSSMRG00000014741 #16	ENSSMRG00000014703 #18	ENSSMRG00000014701 #18	REL (ENSSMRG00000014695) #19	PUS10 (ENSSMRG00000014691) #20	PEX13 (ENSSMRG00000014690) #21	SANBR (ENSSMRG00000014681) #22	USP34 (ENSSMRG00000014173) #25	XPO1 (ENSSMRG00000013644) #26	ENSSMRG00000013643	ENSSMRG00000013642	ENSSMRG00000013641	ENSSMRG00000013640	ENSSMRG00000013638
Common wall lizard	MODERN SPECIES	11	CFAP36 (ENSPMRG00000004247) #9	ENSPMRG00000004261 #10	PNPT1 (ENSPMRG00000004382) #11	ENSPMRG00000004843	EFEMP1 (ENSPMRG00000004850) #12	CCDC85A (ENSPMRG00000004865) #13	VRK2 (ENSPMRG00000004881) #14	FANCL (ENSPMRG00000004896) #15	BCL11A (ENSPMRG00000004920) #16	PAPOLG (ENSPMRG00000004932) #18	ENSPMRG00000004937	ENSPMRG00000004943 #19	ENSPMRG00000004950 #19	PUS10 (ENSPMRG00000004971) #20	PEX13 (ENSPMRG00000005019) #21	SANBR (ENSPMRG00000005027) #22	ENSPMRG00000005052	USP34 (ENSPMRG00000005148) #25	XPO1 (ENSPMRG00000005679) #26	ENSPMRG00000005694	ENSPMRG00000005704	ENSPMRG00000005712	ENSPMRG00000005716	ENSPMRG00000005721	ENSPMRG00000005733	ENSPMRG00000005742	ENSPMRG00000005748	ENSPMRG00000005759	ENSPMRG00000005768	ENSPMRG00000005776	ENSPMRG00000000220
tuatara	MODERN SPECIES	1669											BCL11A (ENSSPUG00000007479) #16	PAPOLG (ENSSPUG00000007491) #18	REL (ENSSPUG00000007514) #19	PUS10 (ENSSPUG00000007530) #20	PEX13 (ENSSPUG00000007550) #21	SANBR (ENSSPUG00000007563) #22	ENSSPUG00000007593 #24	USP34 (ENSSPUG00000007844) #25	XPO1 (ENSSPUG00000009057) #26
Mammalia	ANCESTRAL SPECIES	22	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00910000147025 #17	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT01030000236025	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583	ENSGT00950000183050.b.b.a
Theria	ANCESTRAL SPECIES	13	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00910000147025 #17	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT01030000236025	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583
Eutheria	ANCESTRAL SPECIES	2	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00910000147025 #17	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT01030000236025	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583
Boreoeutheria	ANCESTRAL SPECIES	15	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00910000147025 #17	ENSGT00940000156983.a.a #16	ENSGT00950000185458	ENSGT00800000125307	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT01030000236025	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583
Euarchontoglires	ANCESTRAL SPECIES	15	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00910000147025 #17	ENSGT00940000156983.a.a #16	ENSGT00950000185458	ENSGT00800000125307	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583
Primates	ANCESTRAL SPECIES	14	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00910000147025 #17	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a.h	ENSGT00940000153464.B	ENSGT00390000000583
Haplorrhini	ANCESTRAL SPECIES	15	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00910000147025 #17	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a.h	ENSGT00940000153464.B	ENSGT00390000000583
Simiiformes	ANCESTRAL SPECIES	14	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001.a #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00910000147025 #17	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a.h	ENSGT00940000153464.B	ENSGT00390000000583
Catarrhini	ANCESTRAL SPECIES	17	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001.a #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00910000147025 #17	ENSGT00940000156983.a.a #16	ENSGT01030000234579.A.b.w	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000018318.u.b.a.b.a.a.a	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a.h	ENSGT00940000153464.B	ENSGT00390000000583
Hominoidea	ANCESTRAL SPECIES	18	ENSGT00390000014001.a #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00910000147599	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000153727.b.n	ENSGT00910000147025 #17	ENSGT00940000156983.a.a #16	ENSGT01030000234579.A.b.w	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000018318.u.b.a.b.a.a.a	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a.h	ENSGT00940000153464.B	ENSGT00390000000583
Hominidae	ANCESTRAL SPECIES	19	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001.a #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00910000147599	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000153727.b.n	ENSGT00910000147025 #17	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000018318.u.b.a.b.a.a.a	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00950000183099.u.a.d.b.c.a.b.b	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a.h	ENSGT00940000153464.B
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	18	ENSGT00390000014001.a #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00910000147599	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000153727.b.n	ENSGT00910000147025 #17	ENSGT00940000156983.a.a #16	ENSGT01030000234579.A.b.x.b	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000018318.u.b.a.b.a.a.a	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00950000183099.u.a.d.b.c.a.b.b	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a.h	ENSGT00390000010721.a.a.a.b
Homo/Pan group	ANCESTRAL SPECIES	14	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001.a #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00910000147599	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000153727.b.n	ENSGT00940000156983.a.a #16	ENSGT01030000234579.A.b.x.b	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000018318.u.b.a.b.a.a.a	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a.h	ENSGT00390000010721.a.a.a.b	ENSGT00940000153464.B
Pan	ANCESTRAL SPECIES	17	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001.a #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00910000147599	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000153727.b.n	ENSGT00940000156983.a.a #16	ENSGT01030000234579.A.b.x.b	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000018318.u.b.a.b.a.a.a	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a.h	ENSGT00390000010721.a.a.a.b	ENSGT00940000153464.B
Bonobo	MODERN SPECIES	14	PNPT1 (ENSPPAG00000024705) #11	EFEMP1 (ENSPPAG00000032517) #12	CCDC85A (ENSPPAG00000031213) #13	ENSPPAG00000028192	VRK2 (ENSPPAG00000033421) #14	FANCL (ENSPPAG00000031399) #15	ENSPPAG00000034116	ENSPPAG00000040673	BCL11A (ENSPPAG00000034227) #16	ENSPPAG00000040162	PAPOLG (ENSPPAG00000019917) #18	REL (ENSPPAG00000027755) #19	ENSPPAG00000036115	PUS10 (ENSPPAG00000026137) #20	PEX13 (ENSPPAG00000028208) #21	SANBR (ENSPPAG00000028445) #22	C2orf74 (ENSPPAG00000027440)	ENSPPAG00000038853 #24	ENSPPAG00000040060 #24	USP34 (ENSPPAG00000031846) #25	XPO1 (ENSPPAG00000029699) #26	FAM161A (ENSPPAG00000037442)	CCT4 (ENSPPAG00000036821)	COMMD1 (ENSPPAG00000043574)	B3GNT2 (ENSPPAG00000024510)	TMEM17 (ENSPPAG00000011687)	EHBP1 (ENSPPAG00000043965)	OTX1 (ENSPPAG00000028464)	WDPCP (ENSPPAG00000032819)	MDH1 (ENSPPAG00000042469)	ENSPPAG00000032238
Chimpanzee	MODERN SPECIES	14	PPP4R3B (ENSPTRG00000011933) #10	PNPT1 (ENSPTRG00000011934) #11	EFEMP1 (ENSPTRG00000042961) #12	CCDC85A (ENSPTRG00000011940) #13	ENSPTRG00000047509	VRK2 (ENSPTRG00000011941) #14	FANCL (ENSPTRG00000011942) #15	ENSPTRG00000049455	BCL11A (ENSPTRG00000011944) #16	ENSPTRG00000051789	PAPOLG (ENSPTRG00000011948) #18	REL (ENSPTRG00000011949) #19	ENSPTRG00000048311	PUS10 (ENSPTRG00000011951) #20	PEX13 (ENSPTRG00000011952) #21	SANBR (ENSPTRG00000011954) #22	C2AH2orf74 (ENSPTRG00000033941)	ENSPTRG00000023268 #24	ENSPTRG00000050629 #24	USP34 (ENSPTRG00000011959) #25	XPO1 (ENSPTRG00000011962) #26	FAM161A (ENSPTRG00000011964)	CCT4 (ENSPTRG00000011965)	COMMD1 (ENSPTRG00000011966)	ENSPTRG00000045695	B3GNT2 (ENSPTRG00000051560)	TMEM17 (ENSPTRG00000011968)	EHBP1 (ENSPTRG00000011969)	OTX1 (ENSPTRG00000011972)	WDPCP (ENSPTRG00000024270)	MDH1 (ENSPTRG00000011974)
Human	MODERN SPECIES	11	RPS27A (ENSG00000143947)	MTIF2 (ENSG00000085760)	CCDC88A (ENSG00000115355) #7	CFAP36 (ENSG00000163001) #9	PPP4R3B (ENSG00000275052) #10	PNPT1 (ENSG00000138035) #11	EFEMP1 (ENSG00000115380) #12	CCDC85A (ENSG00000055813) #13	VRK2 (ENSG00000028116) #14	FANCL (ENSG00000115392) #15	BCL11A (ENSG00000119866) #16	PAPOLG (ENSG00000115421) #18	REL (ENSG00000162924) #19	PUS10 (ENSG00000162927) #20	PEX13 (ENSG00000162928) #21	SANBR (ENSG00000162929) #22	C2orf74 (ENSG00000237651)	USP34 (ENSG00000115464) #25	XPO1 (ENSG00000082898) #26	FAM161A (ENSG00000170264)	CCT4 (ENSG00000115484)	COMMD1 (ENSG00000173163)	B3GNT2 (ENSG00000170340)	TMEM17 (ENSG00000186889)	EHBP1 (ENSG00000115504)	OTX1 (ENSG00000115507)	WDPCP (ENSG00000143951)	MDH1 (ENSG00000014641)	UGP2 (ENSG00000169764)	VPS54 (ENSG00000143952)	PELI1 (ENSG00000197329)
Gorilla	MODERN SPECIES	14	PPP4R3B (ENSGGOG00000014676) #10	PNPT1 (ENSGGOG00000006867) #11	EFEMP1 (ENSGGOG00000022559) #12	ENSGGOG00000036302	CCDC85A (ENSGGOG00000011407) #13	VRK2 (ENSGGOG00000012141) #14	FANCL (ENSGGOG00000004094) #15	ENSGGOG00000039338	ENSGGOG00000040840 #17	BCL11A (ENSGGOG00000007337) #16	ENSGGOG00000024123	PAPOLG (ENSGGOG00000006083) #18	REL (ENSGGOG00000024826) #19	PUS10 (ENSGGOG00000026131) #20	PEX13 (ENSGGOG00000006620) #21	SANBR (ENSGGOG00000024214) #22	C2orf74 (ENSGGOG00000023058)	ENSGGOG00000014565 #24	ENSGGOG00000037807 #24	USP34 (ENSGGOG00000014575) #25	XPO1 (ENSGGOG00000034878) #26	FAM161A (ENSGGOG00000013942)	CCT4 (ENSGGOG00000007003)	COMMD1 (ENSGGOG00000007602)	RPSA (ENSGGOG00000026707)	B3GNT2 (ENSGGOG00000025266)	ENSGGOG00000038261	EHBP1 (ENSGGOG00000034917)	OTX1 (ENSGGOG00000015410)	WDPCP (ENSGGOG00000011930)	MDH1 (ENSGGOG00000007085)
Orangutan	MODERN SPECIES	14	ENSPPYG00000012402	CCDC88A (ENSPPYG00000012401) #7	CFAP36 (ENSPPYG00000029888) #9	PPP4R3B (ENSPPYG00000012400) #10	PNPT1 (ENSPPYG00000012399) #11	EFEMP1 (ENSPPYG00000012398) #12	CCDC85A (ENSPPYG00000012396) #13	VRK2 (ENSPPYG00000033504) #14	FANCL (ENSPPYG00000012394) #15	BCL11A (ENSPPYG00000012393) #16	ENSPPYG00000030113	PAPOLG (ENSPPYG00000012392) #18	REL (ENSPPYG00000012391) #19	PUS10 (ENSPPYG00000012390) #20	PEX13 (ENSPPYG00000034552) #21	SANBR (ENSPPYG00000012388) #22	C2orf74 (ENSPPYG00000035727)	ENSPPYG00000036113 #24	USP34 (ENSPPYG00000012384) #25	XPO1 (ENSPPYG00000012383) #26	FAM161A (ENSPPYG00000012382)	CCT4 (ENSPPYG00000012381)	COMMD1 (ENSPPYG00000012380)	ENSPPYG00000019018	B3GNT2 (ENSPPYG00000012379)	TMEM17 (ENSPPYG00000012378)	EHBP1 (ENSPPYG00000012377)	ENSPPYG00000030010	OTX1 (ENSPPYG00000012376)	WDPCP (ENSPPYG00000012374)	MDH1 (ENSPPYG00000012373)
Gibbon	MODERN SPECIES	4	PPP4R3B (ENSNLEG00000009338) #10	PNPT1 (ENSNLEG00000009354) #11	EFEMP1 (ENSNLEG00000009393) #12	CCDC85A (ENSNLEG00000009421) #13	ENSNLEG00000035656	VRK2 (ENSNLEG00000009430) #14	ENSNLEG00000009472 #15	ENSNLEG00000028402	BCL11A (ENSNLEG00000029846) #16	ENSNLEG00000009505	ENSNLEG00000009507 #18	REL (ENSNLEG00000009519) #19	ENSNLEG00000035207	PUS10 (ENSNLEG00000009527) #20	PEX13 (ENSNLEG00000009552) #21	SANBR (ENSNLEG00000009560) #22	C2orf74 (ENSNLEG00000009582)	ENSNLEG00000034163 #24	ENSNLEG00000027829 #24	USP34 (ENSNLEG00000009598) #25	XPO1 (ENSNLEG00000009680) #26	FAM161A (ENSNLEG00000009719)	CCT4 (ENSNLEG00000009723)	COMMD1 (ENSNLEG00000033234)	B3GNT2 (ENSNLEG00000035442)	TMEM17 (ENSNLEG00000009759)	EHBP1 (ENSNLEG00000009764)	ENSNLEG00000027460	OTX1 (ENSNLEG00000009808)	WDPCP (ENSNLEG00000009810)	MDH1 (ENSNLEG00000009823)
Cercopithecidae	ANCESTRAL SPECIES	18	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001.a #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00910000147025 #17	ENSGT00940000156983.a.a #16	ENSGT01030000234579.A.b.w	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000018318.u.b.a.b.a.a.a	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000155413.l.a.b	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a.h	ENSGT00940000153464.B
Rhinopithecus	ANCESTRAL SPECIES	341							ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00910000147025 #17	ENSGT00940000156983.a.a #16	ENSGT01030000234579.A.b.w	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153305.c.e.b	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000155413.l.a.b	ENSGT00940000153408.B #26
Golden snub-nosed monkey	MODERN SPECIES	690							VRK2 (ENSRROG00000030751) #14	FANCL (ENSRROG00000033391) #15	ENSRROG00000041984 #17	BCL11A (ENSRROG00000036743) #16	ENSRROG00000032000	PAPOLG (ENSRROG00000035954) #18	REL (ENSRROG00000027368) #19	PUS10 (ENSRROG00000039961) #20	PEX13 (ENSRROG00000031383) #21	SANBR (ENSRROG00000010642) #22	C2orf74 (ENSRROG00000033337)	ENSRROG00000043476 #24	ENSRROG00000038006	USP34 (ENSRROG00000043473) #25	XPO1 (ENSRROG00000038442) #26
Black snub-nosed monkey	MODERN SPECIES	1441								VRK2 (ENSRBIG00000044680) #14	FANCL (ENSRBIG00000035665) #15	BCL11A (ENSRBIG00000016833) #16	PAPOLG (ENSRBIG00000040086) #18	REL (ENSRBIG00000001622) #19	PUS10 (ENSRBIG00000034187) #20	PEX13 (ENSRBIG00000010724) #21	ENSRBIG00000031375	SANBR (ENSRBIG00000033182) #22	C2orf74 (ENSRBIG00000043239)	ENSRBIG00000032791 #24	ENSRBIG00000031834 #24	ENSRBIG00000041431	USP34 (ENSRBIG00000025559) #25	XPO1 (ENSRBIG00000029189) #26
Cercopithecinae	ANCESTRAL SPECIES	17	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001.a #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT01030000234579.A.b.w	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000018318.u.b.a.b.a.a.a	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000155413.l.a.b	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00950000182995.e.a.a.a.bb.b	ENSGT00390000016551	ENSGT00530000063410.a.h
Vervet Monkey	MODERN SPECIES	5	CFAP36 (ENSCSAG00000014172) #9	PPP4R3B (ENSCSAG00000014201) #10	PNPT1 (ENSCSAG00000014324) #11	EFEMP1 (ENSCSAG00000014365) #12	CCDC85A (ENSCSAG00000014374) #13	VRK2 (ENSCSAG00000014381) #14	FANCL (ENSCSAG00000014388) #15	ENSCSAG00000014395 #16	ENSCSAG00000019450	ENSCSAG00000019449	PAPOLG (ENSCSAG00000014408) #18	REL (ENSCSAG00000014415) #19	ENSCSAG00000014430	PUS10 (ENSCSAG00000014451) #20	PEX13 (ENSCSAG00000014465) #21	SANBR (ENSCSAG00000014480) #22	C2orf74 (ENSCSAG00000014493)	ENSCSAG00000014516 #24	USP34 (ENSCSAG00000014580) #25	XPO1 (ENSCSAG00000014606) #26	FAM161A (ENSCSAG00000014628)	CCT4 (ENSCSAG00000014640)	COMMD1 (ENSCSAG00000014646)	B3GNT2 (ENSCSAG00000019448)	ENSCSAG00000019447	TMEM17 (ENSCSAG00000014653)	EHBP1 (ENSCSAG00000014669)	OTX1 (ENSCSAG00000014675)	ENSCSAG00000019446	WDPCP (ENSCSAG00000014684)	MDH1 (ENSCSAG00000014691)
Cercopithecinae_a	ANCESTRAL SPECIES	17	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001.a #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT01030000234579.A.b.w	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000018318.u.b.a.b.a.a.a	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000155413.l.a.b	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00950000182995.e.a.a.a.bb.b	ENSGT00390000016551	ENSGT00530000063410.a.h
Cercopithecinae_b	ANCESTRAL SPECIES	15	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001.a.b #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00950000182895.a.b.j.b.e.a	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00530000063174.a.i.f	ENSGT00940000156983.a.a #16	ENSGT01030000234579.A.b.w	ENSGT00390000008802.m.a.a	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000155413.l.a.b	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a.h	ENSGT00940000153464.B
Olive baboon	DUPLICATION
Olive baboon	MODERN SPECIES	5	ENSPANG00000031278	EFEMP1 (ENSPANG00000022521) #12	ENSPANG00000041504	ENSPANG00000043733	CCDC85A (ENSPANG00000016914) #13	ENSPANG00000010717	VRK2 (ENSPANG00000014544) #14	FANCL (ENSPANG00000021497) #15	ENSPANG00000021826	BCL11A (ENSPANG00000018170) #16	ENSPANG00000000672	PAPOLG (ENSPANG00000014543) #18	REL (ENSPANG00000006148) #19	PUS10 (ENSPANG00000018036) #20	PEX13 (ENSPANG00000022181) #21	ENSPANG00000017323 #22	ENSPANG00000039323	C2orf74 (ENSPANG00000035894)	ENSPANG00000016913 #24	USP34 (ENSPANG00000025375) #25	XPO1 (ENSPANG00000006892) #26	FAM161A (ENSPANG00000010259)	CCT4 (ENSPANG00000019105)	COMMD1 (ENSPANG00000006093)	B3GNT2 (ENSPANG00000007808)	ENSPANG00000051251	TMEM17 (ENSPANG00000042367)	EHBP1 (ENSPANG00000016912)	OTX1 (ENSPANG00000038245)	WDPCP (ENSPANG00000019775)	ENSPANG00000044221
Olive baboon	MODERN SPECIES	595																ENSPANG00000050533 #22
Cercopithecinae_d	ANCESTRAL SPECIES	32	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001.a.b #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00530000063174.a.i.f	ENSGT00940000156983.a.a #16	ENSGT01030000234579.A.b.w	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000155413.l.a.b	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.a	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a.h
Drill	MODERN SPECIES	951														ENSMLEG00000031853	PEX13 (ENSMLEG00000042218) #21	SANBR (ENSMLEG00000044342) #22	C2orf74 (ENSMLEG00000041467)	ENSMLEG00000028334 #24	ENSMLEG00000036543 #24	ENSMLEG00000029346	USP34 (ENSMLEG00000040976) #25	XPO1 (ENSMLEG00000032004) #26	FAM161A (ENSMLEG00000038057)	CCT4 (ENSMLEG00000037693)	ENSMLEG00000044216	COMMD1 (ENSMLEG00000042809)	B3GNT2 (ENSMLEG00000008417)	TMEM17 (ENSMLEG00000040238)	EHBP1 (ENSMLEG00000031553)	OTX1 (ENSMLEG00000029765)	WDPCP (ENSMLEG00000040899)
Sooty mangabey	MODERN SPECIES	494	CCDC88A (ENSCATG00000031995) #7	CFAP36 (ENSCATG00000038971) #9	PPP4R3B (ENSCATG00000043841) #10	PNPT1 (ENSCATG00000031551) #11	EFEMP1 (ENSCATG00000017977) #12	CCDC85A (ENSCATG00000041791) #13	ENSCATG00000001923	VRK2 (ENSCATG00000033236) #14	FANCL (ENSCATG00000039130) #15	BCL11A (ENSCATG00000035456) #16	ENSCATG00000030944	PAPOLG (ENSCATG00000044395) #18	REL (ENSCATG00000035174) #19	PUS10 (ENSCATG00000045305) #20	PEX13 (ENSCATG00000039835) #21	SANBR (ENSCATG00000045345) #22	ENSCATG00000045334	C2orf74 (ENSCATG00000037754)	ENSCATG00000043938 #24	ENSCATG00000038823 #24	USP34 (ENSCATG00000042180) #25	ENSCATG00000013431	XPO1 (ENSCATG00000032674) #26	FAM161A (ENSCATG00000043996)	CCT4 (ENSCATG00000038933)	ENSCATG00000038149	COMMD1 (ENSCATG00000011551)	B3GNT2 (ENSCATG00000011785)	TMEM17 (ENSCATG00000038173)	EHBP1 (ENSCATG00000030805)	OTX1 (ENSCATG00000031998)
Macaca	ANCESTRAL SPECIES	17	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001.a #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00530000063174.a.i.f	ENSGT00910000147025 #17	ENSGT00940000156983.a.a #16	ENSGT01030000234579.A.b.w	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000018318.u.b.a.b.a.a.a	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00950000182995.e.a.a.a.bb.b	ENSGT00390000016551	ENSGT00530000063410.a.h	ENSGT00940000153464.B
Macaca_a	ANCESTRAL SPECIES	15	ENSGT00940000164709.a.b.b.a.a.b.a.a.a.a.a.a.a.b.b	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT01100000263543.a.g.a.a.a.a	ENSGT00950000182895.a.b.j.b.e.a	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT01100000263539.b.a.a.a.b.b.b.a.b.b.a.a.b	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT01100000263493.a.b.a.a.a.a.a.a.a.a.a.a.a.a.a.a	ENSGT00940000158732 #19	ENSGT00390000018318.u.b.a.b.a.a.a	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT01100000263493.a.b.b.a.a.b.b.a.a.a.a.a.a.b.a.a.a.b.b	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00950000182995.e.a.a.a.bb.b	ENSGT00390000016551	ENSGT00530000063410.a.h
Crab-eating macaque	MODERN SPECIES	4	SUMO3 (ENSMFAG00000009821)	VRK2 (ENSMFAG00000031394) #14	FANCL (ENSMFAG00000042101) #15	ENSMFAG00000057303	ENSMFAG00000050088	BCL11A (ENSMFAG00000016402) #16	ENSMFAG00000047975	ENSMFAG00000044508	ENSMFAG00000052777	PAPOLG (ENSMFAG00000042450) #18	ENSMFAG00000056134	REL (ENSMFAG00000038696) #19	ENSMFAG00000064635	PUS10 (ENSMFAG00000000611) #20	PEX13 (ENSMFAG00000042959) #21	SANBR (ENSMFAG00000007392) #22	C2orf74 (ENSMFAG00000034596)	ENSMFAG00000042177 #24	USP34 (ENSMFAG00000043581) #25	XPO1 (ENSMFAG00000038679) #26	ENSMFAG00000057809	ENSMFAG00000061185	ENSMFAG00000063382	FAM161A (ENSMFAG00000028707)	CCT4 (ENSMFAG00000031348)	ENSMFAG00000056305	ENSMFAG00000016016	COMMD1 (ENSMFAG00000043104)	B3GNT2 (ENSMFAG00000029481)	TMEM17 (ENSMFAG00000063543)	EHBP1 (ENSMFAG00000043351)
Rhesus	MODERN SPECIES	4	CCDC85A (ENSMMUG00000015888) #13	ENSMMUG00000064261	ENSMMUG00000002024	VRK2 (ENSMMUG00000002025) #14	ENSMMUG00000064756	FANCL (ENSMMUG00000002026) #15	ENSMMUG00000060918	BCL11A (ENSMMUG00000011303) #16	PAPOLG (ENSMMUG00000000498) #18	ENSMMUG00000057135	REL (ENSMMUG00000010834) #19	ENSMMUG00000055963	PUS10 (ENSMMUG00000005685) #20	ENSMMUG00000052940	PEX13 (ENSMMUG00000005687) #21	SANBR (ENSMMUG00000021990) #22	C13H2orf74 (ENSMMUG00000041555)	AHSA2 (ENSMMUG00000008097) #24	USP34 (ENSMMUG00000008098) #25	XPO1 (ENSMMUG00000006941) #26	ENSMMUG00000059978	ENSMMUG00000056178	ENSMMUG00000063300	FAM161A (ENSMMUG00000013972)	CCT4 (ENSMMUG00000013973)	COMMD1 (ENSMMUG00000030824)	B3GNT2 (ENSMMUG00000014181)	TMEM17 (ENSMMUG00000057986)	EHBP1 (ENSMMUG00000016668)	OTX1 (ENSMMUG00000051405)	ENSMMUG00000030822
Pig-tailed macaque	MODERN SPECIES	341	PPP4R3B (ENSMNEG00000030876) #10	PNPT1 (ENSMNEG00000038589) #11	EFEMP1 (ENSMNEG00000043412) #12	ENSMNEG00000004015	CCDC85A (ENSMNEG00000041770) #13	VRK2 (ENSMNEG00000042551) #14	FANCL (ENSMNEG00000028810) #15	ENSMNEG00000044442	BCL11A (ENSMNEG00000040327) #16	ENSMNEG00000036604 #17	ENSMNEG00000041584	PAPOLG (ENSMNEG00000035939) #18	REL (ENSMNEG00000042843) #19	PUS10 (ENSMNEG00000043877) #20	PEX13 (ENSMNEG00000030840) #21	SANBR (ENSMNEG00000041924) #22	ENSMNEG00000033482	C2orf74 (ENSMNEG00000028498)	ENSMNEG00000042228	ENSMNEG00000036948 #24	ENSMNEG00000036676 #24	USP34 (ENSMNEG00000039067) #25	XPO1 (ENSMNEG00000030909) #26	FAM161A (ENSMNEG00000031037)	CCT4 (ENSMNEG00000044353)	COMMD1 (ENSMNEG00000024928)	B3GNT2 (ENSMNEG00000025770)	TMEM17 (ENSMNEG00000040952)	ENSMNEG00000038346	EHBP1 (ENSMNEG00000043070)	OTX1 (ENSMNEG00000044308)
Platyrrhini	ANCESTRAL SPECIES	13	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001.a #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00910000147025 #17	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529.o #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029.h	ENSGT00940000155345.m	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a.h.a.b	ENSGT00940000153464.B	ENSGT00390000000583
Cebidae	ANCESTRAL SPECIES	15	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001.a #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00910000147025 #17	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529.o #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029.h	ENSGT00940000155345.m	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a.h.a.b	ENSGT00940000153464.B	ENSGT00390000000583
Cebidae_a	ANCESTRAL SPECIES	30	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001.a #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00910000147025 #17	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529.o #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00900000141074.e.b.a	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029.h	ENSGT00940000155345.m	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a.h.a.b.b	ENSGT00940000153464.B
Capuchin	MODERN SPECIES	175						ENSCCAG00000025113	VRK2 (ENSCCAG00000000045) #14	FANCL (ENSCCAG00000028480) #15	ENSCCAG00000034211	BCL11A (ENSCCAG00000037622) #16	ENSCCAG00000028577 #17	PAPOLG (ENSCCAG00000026893) #18	REL (ENSCCAG00000023238) #19	PUS10 (ENSCCAG00000023679) #20	PEX13 (ENSCCAG00000024187) #21	SANBR (ENSCCAG00000036557) #22	C2orf74 (ENSCCAG00000032740)	ENSCCAG00000037196 #24	ENSCCAG00000023738 #24	USP34 (ENSCCAG00000025282) #25	XPO1 (ENSCCAG00000037445) #26
Bolivian squirrel monkey	MODERN SPECIES	48	CFAP36 (ENSSBOG00000027295) #9	PPP4R3B (ENSSBOG00000027070) #10	PNPT1 (ENSSBOG00000032574) #11	EFEMP1 (ENSSBOG00000025793) #12	CCDC85A (ENSSBOG00000024988) #13	VRK2 (ENSSBOG00000021590) #14	FANCL (ENSSBOG00000020655) #15	ENSSBOG00000019621	ENSSBOG00000016171	ENSSBOG00000035616 #17	BCL11A (ENSSBOG00000020438) #16	PAPOLG (ENSSBOG00000026194) #18	REL (ENSSBOG00000036176) #19	PUS10 (ENSSBOG00000014791) #20	PEX13 (ENSSBOG00000026445) #21	SANBR (ENSSBOG00000025340) #22	C2orf74 (ENSSBOG00000026818)	ENSSBOG00000029475 #24	USP34 (ENSSBOG00000034202) #25	ENSSBOG00000020979	XPO1 (ENSSBOG00000034467) #26	ENSSBOG00000010136	FAM161A (ENSSBOG00000034089)	CCT4 (ENSSBOG00000026025)	COMMD1 (ENSSBOG00000032499)	ENSSBOG00000019927	TMEM17 (ENSSBOG00000026954)	EHBP1 (ENSSBOG00000027993)	OTX1 (ENSSBOG00000030274)	WDPCP (ENSSBOG00000020988)	ENSSBOG00000035941
Marmoset	MODERN SPECIES	5	CFAP36 (ENSCJAG00000009868) #9	PPP4R3B (ENSCJAG00000009837) #10	PNPT1 (ENSCJAG00000009740) #11	EFEMP1 (ENSCJAG00000009690) #12	CCDC85A (ENSCJAG00000009663) #13	ENSCJAG00000058631	ENSCJAG00000079387	VRK2 (ENSCJAG00000009299) #14	FANCL (ENSCJAG00000009275) #15	ENSCJAG00000080516	BCL11A (ENSCJAG00000009226) #16	PAPOLG (ENSCJAG00000009102) #18	REL (ENSCJAG00000008975) #19	PUS10 (ENSCJAG00000009054) #20	PEX13 (ENSCJAG00000009037) #21	SANBR (ENSCJAG00000009029) #22	C2orf74 (ENSCJAG00000042078)	USP34 (ENSCJAG00000044195) #25	XPO1 (ENSCJAG00000008877) #26	FAM161A (ENSCJAG00000008852)	CCT4 (ENSCJAG00000008703)	ENSCJAG00000060745	COMMD1 (ENSCJAG00000008693)	B3GNT2 (ENSCJAG00000046682)	TMEM17 (ENSCJAG00000045778)	ENSCJAG00000077815	EHBP1 (ENSCJAG00000008586)	OTX1 (ENSCJAG00000083222)	ENSCJAG00000075756	WDPCP (ENSCJAG00000007061)	ENSCJAG00000007018
Mas night monkey	MODERN SPECIES	655	CCDC88A (ENSANAG00000034572) #7	CFAP36 (ENSANAG00000038033) #9	PPP4R3B (ENSANAG00000037112) #10	PNPT1 (ENSANAG00000023709) #11	EFEMP1 (ENSANAG00000026183) #12	CCDC85A (ENSANAG00000035494) #13	VRK2 (ENSANAG00000031491) #14	FANCL (ENSANAG00000035956) #15	BCL11A (ENSANAG00000033679) #16	ENSANAG00000025908 #17	ENSANAG00000034957	PAPOLG (ENSANAG00000024627) #18	REL (ENSANAG00000030350) #19	ENSANAG00000034924 #20	PEX13 (ENSANAG00000022255) #21	SANBR (ENSANAG00000030682) #22	C2orf74 (ENSANAG00000032268)	ENSANAG00000036395 #24	ENSANAG00000023187 #24	USP34 (ENSANAG00000028238) #25	ENSANAG00000019334	XPO1 (ENSANAG00000020802) #26	ENSANAG00000026753	FAM161A (ENSANAG00000033665)	CCT4 (ENSANAG00000036567)	COMMD1 (ENSANAG00000030463)	ENSANAG00000018780	ENSANAG00000036675	ENSANAG00000036898	ENSANAG00000019382	ENSANAG00000024280
Tarsier	MODERN SPECIES	6892													REL (ENSTSYG00000012918) #19	PUS10 (ENSTSYG00000004952) #20	PEX13 (ENSTSYG00000008935) #21	SANBR (ENSTSYG00000014346) #22
Strepsirrhini	ANCESTRAL SPECIES	13	ENSGT00900000141103	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a.g.a	ENSGT00940000153464.B	ENSGT00390000000583
Lemuriformes	ANCESTRAL SPECIES	19	ENSGT00900000141103	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a.g.a	ENSGT00940000153464.B	ENSGT00390000000583
Mouse lemur	MODERN SPECIES	26	CCDC88A (ENSMICG00000017444) #7	CFAP36 (ENSMICG00000017446) #9	PPP4R3B (ENSMICG00000009332) #10	PNPT1 (ENSMICG00000009369) #11	EFEMP1 (ENSMICG00000015820) #12	CCDC85A (ENSMICG00000029777) #13	VRK2 (ENSMICG00000015032) #14	FANCL (ENSMICG00000015042) #15	ENSMICG00000047286	BCL11A (ENSMICG00000015052) #16	ENSMICG00000044285	PAPOLG (ENSMICG00000010042) #18	REL (ENSMICG00000010062) #19	PUS10 (ENSMICG00000010073) #20	PEX13 (ENSMICG00000042434) #21	SANBR (ENSMICG00000016768) #22	ENSMICG00000034983	ENSMICG00000044675 #24	ENSMICG00000007130 #24	USP34 (ENSMICG00000007137) #25	XPO1 (ENSMICG00000027770) #26	FAM161A (ENSMICG00000032665)	ENSMICG00000015263	COMMD1 (ENSMICG00000036432)	TMEM17 (ENSMICG00000045940)	ENSMICG00000035187	EHBP1 (ENSMICG00000011224)	ENSMICG00000036558	OTX1 (ENSMICG00000032707)	WDPCP (ENSMICG00000017077)	ENSMICG00000015195
Lemuriformes_a	ANCESTRAL SPECIES	52	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00390000007888.c.a.l	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a.g.a	ENSGT00940000153464.B	ENSGT00390000000583
Greater bamboo lemur	MODERN SPECIES	110				PPP4R3B (ENSPSMG00000014906) #10	ENSPSMG00000014688 #11	EFEMP1 (ENSPSMG00000014682) #12	CCDC85A (ENSPSMG00000014659) #13	VRK2 (ENSPSMG00000014589) #14	FANCL (ENSPSMG00000014519) #15	BCL11A (ENSPSMG00000014400) #16	ENSPSMG00000014323	PAPOLG (ENSPSMG00000014309) #18	REL (ENSPSMG00000014248) #19	PUS10 (ENSPSMG00000014223) #20	PEX13 (ENSPSMG00000014186) #21	SANBR (ENSPSMG00000014173) #22	C2orf74 (ENSPSMG00000014130)	ENSPSMG00000014118 #24	ENSPSMG00000014116 #24	USP34 (ENSPSMG00000014044) #25	XPO1 (ENSPSMG00000013942) #26	FAM161A (ENSPSMG00000013859)	CCT4 (ENSPSMG00000013804)	COMMD1 (ENSPSMG00000013664)	B3GNT2 (ENSPSMG00000013657)	TMEM17 (ENSPSMG00000013649)
Coquerels sifaka	MODERN SPECIES	157								VRK2 (ENSPCOG00000023369) #14	FANCL (ENSPCOG00000007541) #15	BCL11A (ENSPCOG00000028073) #16	ENSPCOG00000013895	PAPOLG (ENSPCOG00000027306) #18	REL (ENSPCOG00000023844) #19	PUS10 (ENSPCOG00000027006) #20	PEX13 (ENSPCOG00000023862) #21	SANBR (ENSPCOG00000016045) #22	C2orf74 (ENSPCOG00000019501)	ENSPCOG00000019004 #24	ENSPCOG00000014897 #24	USP34 (ENSPCOG00000019384) #25	ENSPCOG00000026732	XPO1 (ENSPCOG00000023123) #26	FAM161A (ENSPCOG00000025568)	CCT4 (ENSPCOG00000024760)	COMMD1 (ENSPCOG00000002593)	TMEM17 (ENSPCOG00000003689)	EHBP1 (ENSPCOG00000013807)	OTX1 (ENSPCOG00000007128)	WDPCP (ENSPCOG00000021207)	ENSPCOG00000022476	UGP2 (ENSPCOG00000021592)
Bushbaby	MODERN SPECIES	139	CCDC88A (ENSOGAG00000004308) #7	CFAP36 (ENSOGAG00000009833) #9	PPP4R3B (ENSOGAG00000009837) #10	PNPT1 (ENSOGAG00000009840) #11	EFEMP1 (ENSOGAG00000000054) #12	CCDC85A (ENSOGAG00000026544) #13	ENSOGAG00000016063 #14	FANCL (ENSOGAG00000016066) #15	ENSOGAG00000028600	ENSOGAG00000026311	BCL11A (ENSOGAG00000024696) #16	PAPOLG (ENSOGAG00000003145) #18	REL (ENSOGAG00000013722) #19	PUS10 (ENSOGAG00000013726) #20	PEX13 (ENSOGAG00000032082) #21	SANBR (ENSOGAG00000013736) #22	C2orf74 (ENSOGAG00000033349)	ENSOGAG00000012906 #24	USP34 (ENSOGAG00000012908) #25	XPO1 (ENSOGAG00000000143) #26	FAM161A (ENSOGAG00000024144)	CCT4 (ENSOGAG00000003974)	COMMD1 (ENSOGAG00000029292)	ENSOGAG00000028774	TMEM17 (ENSOGAG00000015014)	EHBP1 (ENSOGAG00000005236)	OTX1 (ENSOGAG00000027686)	WDPCP (ENSOGAG00000026615)	ENSOGAG00000014487	UGP2 (ENSOGAG00000013975)	VPS54 (ENSOGAG00000013980)
Euarchontoglires_A	ANCESTRAL SPECIES	14	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00950000185458	ENSGT00800000125307	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583
Glires	ANCESTRAL SPECIES	13	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00950000185458	ENSGT00800000125307	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583
Rodentia	ANCESTRAL SPECIES	15	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00800000125307	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583
Rodentia_A	ANCESTRAL SPECIES	14	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00800000125307	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583
Sciuridae	ANCESTRAL SPECIES	16	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00800000125307	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583
Marmotini	ANCESTRAL SPECIES	14	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00950000183120.e.b.a.a.b.a.a.b	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00800000125307	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583
Marmotini_b	ANCESTRAL SPECIES	44	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00950000183120.e.b.a.a.b.a.a.b	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000154451.s	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029.m	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B
Squirrel	MODERN SPECIES	91	ENSSTOG00000005439	CCDC88A (ENSSTOG00000026277) #7	CFAP36 (ENSSTOG00000006243) #9	PPP4R3B (ENSSTOG00000006276) #10	PNPT1 (ENSSTOG00000006304) #11	EFEMP1 (ENSSTOG00000025148) #12	CCDC85A (ENSSTOG00000026098) #13	ENSSTOG00000026635	VRK2 (ENSSTOG00000012525) #14	FANCL (ENSSTOG00000012532) #15	BCL11A (ENSSTOG00000004523) #16	PAPOLG (ENSSTOG00000010861) #18	REL (ENSSTOG00000005785) #19	PUS10 (ENSSTOG00000005814) #20	PEX13 (ENSSTOG00000005864) #21	SANBR (ENSSTOG00000005893) #22	ENSSTOG00000029668	C2orf74 (ENSSTOG00000026908)	ENSSTOG00000007718 #24	USP34 (ENSSTOG00000007744) #25	ENSSTOG00000020670	XPO1 (ENSSTOG00000016122) #26	ENSSTOG00000028618	FAM161A (ENSSTOG00000026146)	CCT4 (ENSSTOG00000014911)	COMMD1 (ENSSTOG00000015062)	B3GNT2 (ENSSTOG00000015068)	TMEM17 (ENSSTOG00000009462)	EHBP1 (ENSSTOG00000020225)	OTX1 (ENSSTOG00000025219)	WDPCP (ENSSTOG00000014213)
Arctic ground squirrel	MODERN SPECIES	47												PAPOLG (ENSUPAG00010011631) #18	REL (ENSUPAG00010011621) #19	PUS10 (ENSUPAG00010011569) #20	PEX13 (ENSUPAG00010011557) #21	SANBR (ENSUPAG00010011475) #22	C2orf74 (ENSUPAG00010011464)	ENSUPAG00010011445 #24	USP34 (ENSUPAG00010011360) #25	XPO1 (ENSUPAG00010011307) #26	ENSUPAG00010011301	FAM161A (ENSUPAG00010011296)	CCT4 (ENSUPAG00010011275)	ENSUPAG00010011263	B3GNT2 (ENSUPAG00010011255)	TMEM17 (ENSUPAG00010011243)	EHBP1 (ENSUPAG00010011097)	OTX1 (ENSUPAG00010011094)	WDPCP (ENSUPAG00010011061)	MDH1 (ENSUPAG00010011052)	UGP2 (ENSUPAG00010011000)
Alpin marmot	MODERN SPECIES	6	CFAP36 (ENSMMMG00000007393) #9	PPP4R3B (ENSMMMG00000007370) #10	PNPT1 (ENSMMMG00000007328) #11	EFEMP1 (ENSMMMG00000007318) #12	CCDC85A (ENSMMMG00000007290) #13	ENSMMMG00000007281	VRK2 (ENSMMMG00000007213) #14	FANCL (ENSMMMG00000007162) #15	ENSMMMG00000007141	BCL11A (ENSMMMG00000007103) #16	ENSMMMG00000007079	PAPOLG (ENSMMMG00000007034) #18	REL (ENSMMMG00000007001) #19	ENSMMMG00000006930 #20	PEX13 (ENSMMMG00000006925) #21	SANBR (ENSMMMG00000006843) #22	ENSMMMG00000006840	C2orf74 (ENSMMMG00000006827)	ENSMMMG00000006820 #24	USP34 (ENSMMMG00000006722) #25	XPO1 (ENSMMMG00000006603) #26	ENSMMMG00000006598	ENSMMMG00000006583	CCT4 (ENSMMMG00000006543)	ENSMMMG00000006529	B3GNT2 (ENSMMMG00000006495)	TMEM17 (ENSMMMG00000006473)	EHBP1 (ENSMMMG00000006363)	OTX1 (ENSMMMG00000006353)	WDPCP (ENSMMMG00000006330)	MDH1 (ENSMMMG00000006303)
Eurasian red squirrel	MODERN SPECIES	5	PNPT1 (ENSSVLG00005024743) #11	EFEMP1 (ENSSVLG00005024710) #12	CCDC85A (ENSSVLG00005024681) #13	ENSSVLG00005024663	ENSSVLG00005024641	ENSSVLG00005024611	ENSSVLG00005024500 #14	FANCL (ENSSVLG00005024291) #15	ENSSVLG00005024225	BCL11A (ENSSVLG00005024161) #16	ENSSVLG00005024132	PAPOLG (ENSSVLG00005024109) #18	REL (ENSSVLG00005024054) #19	PUS10 (ENSSVLG00005024033) #20	PEX13 (ENSSVLG00005023987) #21	SANBR (ENSSVLG00005023769) #22	ENSSVLG00005023730	C2orf74 (ENSSVLG00005023693)	ENSSVLG00005023655 #24	ENSSVLG00005023624	ENSSVLG00005023593 #24	USP34 (ENSSVLG00005023531) #25	XPO1 (ENSSVLG00005023207) #26	ENSSVLG00005023491 #26	ENSSVLG00005023117	ENSSVLG00005023092	FAM161A (ENSSVLG00005023008)	CCT4 (ENSSVLG00005022942)	CRIPT (ENSSVLG00005022896)	ENSSVLG00005022859	ENSSVLG00005022821
Hystricomorpha	ANCESTRAL SPECIES	8	ENSGT00900000141103	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583
Hystricomorpha_a	ANCESTRAL SPECIES	35	ENSGT00900000141103	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583	ENSGT00950000183050.b.b.a
Hystricomorpha_b	DUPLICATION
Hystricomorpha_b	ANCESTRAL SPECIES	33	ENSGT00900000141103	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178.g #22	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583	ENSGT00950000183050.b.b.a
Long-tailed chinchilla	MODERN SPECIES	131	MTIF2 (ENSCLAG00000007900)	ENSCLAG00000007625	CCDC88A (ENSCLAG00000010133) #7	CFAP36 (ENSCLAG00000016701) #9	ENSCLAG00000007551 #10	PNPT1 (ENSCLAG00000006240) #11	EFEMP1 (ENSCLAG00000015816) #12	CCDC85A (ENSCLAG00000015417) #13	VRK2 (ENSCLAG00000016561) #14	FANCL (ENSCLAG00000011359) #15	BCL11A (ENSCLAG00000009184) #16	PAPOLG (ENSCLAG00000008603) #18	REL (ENSCLAG00000007490) #19	PUS10 (ENSCLAG00000011001) #20	PEX13 (ENSCLAG00000015482) #21	SANBR (ENSCLAG00000009068) #22	ENSCLAG00000007857 #24	USP34 (ENSCLAG00000010299) #25	XPO1 (ENSCLAG00000012953) #26	FAM161A (ENSCLAG00000011652)	CCT4 (ENSCLAG00000014321)	COMMD1 (ENSCLAG00000013262)	B3GNT2 (ENSCLAG00000013147)	TMEM17 (ENSCLAG00000013487)	EHBP1 (ENSCLAG00000007561)	OTX1 (ENSCLAG00000010265)	ENSCLAG00000008400	MDH1 (ENSCLAG00000007815)	UGP2 (ENSCLAG00000010416)	VPS54 (ENSCLAG00000007366)	PELI1 (ENSCLAG00000006481)
Degu	MODERN SPECIES	119						ENSODEG00000013497	VRK2 (ENSODEG00000013065) #14	ENSODEG00000013163 #15	ENSODEG00000020019	ENSODEG00000012035	BCL11A (ENSODEG00000011913) #16	ENSODEG00000012174	PAPOLG (ENSODEG00000012424) #18	REL (ENSODEG00000013430) #19	PUS10 (ENSODEG00000011720) #20	ENSODEG00000012067 #22	ENSODEG00000011830 #24	USP34 (ENSODEG00000011790) #25	ENSODEG00000020015	XPO1 (ENSODEG00000012632) #26	ENSODEG00000011466	ENSODEG00000011239	ENSODEG00000012087	ENSODEG00000012263	ENSODEG00000011618	ENSODEG00000011341	B3GNT2 (ENSODEG00000011165)	ENSODEG00000011529	EHBP1 (ENSODEG00000012259)	OTX1 (ENSODEG00000012071)	ENSODEG00000011160
Hystricomorpha_b	ANCESTRAL SPECIES																	ENSGT00390000008178.h #22
Degu	MODERN SPECIES	187																ENSODEG00000006792 #22	ENSODEG00000006850	NAALAD2 (ENSODEG00000007241)	ENSODEG00000006708	PPME1 (ENSODEG00000005995)	ENSODEG00000006930	UCP3 (ENSODEG00000006219)	UCP2 (ENSODEG00000006654)	DNAJB13 (ENSODEG00000009167)	PAAF1 (ENSODEG00000006842)	ENSODEG00000007008	MRPL48 (ENSODEG00000005929)	RAB6A (ENSODEG00000005942)	PLEKHB1 (ENSODEG00000006517)	ENSODEG00000005922	ENSODEG00000006010
Guinea pig	MODERN SPECIES	48	ENSCPOG00000004666	CCDC88A (ENSCPOG00000004824) #7	CFAP36 (ENSCPOG00000010993) #9	PPP4R3B (ENSCPOG00000010998) #10	PNPT1 (ENSCPOG00000011008) #11	EFEMP1 (ENSCPOG00000002568) #12	CCDC85A (ENSCPOG00000001873) #13	VRK2 (ENSCPOG00000015550) #14	FANCL (ENSCPOG00000015552) #15	ENSCPOG00000032549	BCL11A (ENSCPOG00000007587) #16	PAPOLG (ENSCPOG00000010306) #18	REL (ENSCPOG00000011659) #19	PUS10 (ENSCPOG00000011670) #20	PEX13 (ENSCPOG00000034678) #21	SANBR (ENSCPOG00000004783) #22	ENSCPOG00000004791 #24	USP34 (ENSCPOG00000004796) #25	XPO1 (ENSCPOG00000034053) #26	FAM161A (ENSCPOG00000002085)	CCT4 (ENSCPOG00000002086)	COMMD1 (ENSCPOG00000002088)	B3GNT2 (ENSCPOG00000034379)	TMEM17 (ENSCPOG00000035038)	EHBP1 (ENSCPOG00000002001)	OTX1 (ENSCPOG00000004881)	ENSCPOG00000030520	ENSCPOG00000036317	MDH1 (ENSCPOG00000010755)	UGP2 (ENSCPOG00000008459)	VPS54 (ENSCPOG00000037738)
Naked mole-rat female	MODERN SPECIES	23	CCDC85A (ENSHGLG00000006824) #13	ENSHGLG00000040361	ENSHGLG00000044514	VRK2 (ENSHGLG00000006691) #14	FANCL (ENSHGLG00000006628) #15	BCL11A (ENSHGLG00000019600) #16	ENSHGLG00000040216	ENSHGLG00000036544	PAPOLG (ENSHGLG00000019610) #18	REL (ENSHGLG00000019601) #19	PUS10 (ENSHGLG00000019599) #20	PEX13 (ENSHGLG00000042744) #21	ENSHGLG00000046720	ENSHGLG00000047849	ENSHGLG00000046080	SANBR (ENSHGLG00000013196) #22	ENSHGLG00000019155	ENSHGLG00000019027 #24	USP34 (ENSHGLG00000003393) #25	ENSHGLG00000019983	XPO1 (ENSHGLG00000003115) #26	FAM161A (ENSHGLG00000003066)	ENSHGLG00000033740	ENSHGLG00000002885	ENSHGLG00000046505	ENSHGLG00000035774	ENSHGLG00000008287	TMEM17 (ENSHGLG00000007663)	EHBP1 (ENSHGLG00000007334)	OTX1 (ENSHGLG00000007005)	ENSHGLG00000039651
Rodentia_B	ANCESTRAL SPECIES	14	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00800000125307	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583
Myomorpha	ANCESTRAL SPECIES	24	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00800000125307	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583
Muroidea	ANCESTRAL SPECIES	21	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00800000125307	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583
Muroidea_A	ANCESTRAL SPECIES	13	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00800000125307	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583
Cricetidae	ANCESTRAL SPECIES	14	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00800000125307	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583
Cricetidae_B	ANCESTRAL SPECIES	9	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00800000125307	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	92														ENSMOCG00000000119	ENSMOCG00000012151	ENSMOCG00000002753 #22	ENSMOCG00000011390 #22	1700093K21Rik (ENSMOCG00000014054)	ENSMOCG00000017180 #24	Usp34 (ENSMOCG00000002256) #25	Xpo1 (ENSMOCG00000012169) #26	ENSMOCG00000018790	ENSMOCG00000016877	Cct4 (ENSMOCG00000011789)	Commd1 (ENSMOCG00000006391)	B3gnt2 (ENSMOCG00000000086)	Tmem17 (ENSMOCG00000015494)	Ehbp1 (ENSMOCG00000007287)	Otx1 (ENSMOCG00000014191)	Wdpcp (ENSMOCG00000003579)	Mdh1 (ENSMOCG00000015448)
Prairie vole	MODERN SPECIES	92													ENSMOCG00000000119	ENSMOCG00000012151	ENSMOCG00000002753 #22	ENSMOCG00000011390 #22	1700093K21Rik (ENSMOCG00000014054)	ENSMOCG00000017180 #24	Usp34 (ENSMOCG00000002256) #25	Xpo1 (ENSMOCG00000012169) #26	ENSMOCG00000018790	ENSMOCG00000016877	Cct4 (ENSMOCG00000011789)	Commd1 (ENSMOCG00000006391)	B3gnt2 (ENSMOCG00000000086)	Tmem17 (ENSMOCG00000015494)	Ehbp1 (ENSMOCG00000007287)	Otx1 (ENSMOCG00000014191)	Wdpcp (ENSMOCG00000003579)	Mdh1 (ENSMOCG00000015448)	Ugp2 (ENSMOCG00000009715)
Northern American deer mouse	MODERN SPECIES	1	Cfap36 (ENSPEMG00000019190) #9	Ppp4r3b (ENSPEMG00000008100) #10	Pnpt1 (ENSPEMG00000004284) #11	Efemp1 (ENSPEMG00000008361) #12	ENSPEMG00000009148	Ccdc85a (ENSPEMG00000013322) #13	Vrk2 (ENSPEMG00000001459) #14	Fancl (ENSPEMG00000008881) #15	ENSPEMG00000026070	Bcl11a (ENSPEMG00000008063) #16	ENSPEMG00000027866	ENSPEMG00000008960 #18	Rel (ENSPEMG00000009851) #19	Pus10 (ENSPEMG00000013145) #20	Pex13 (ENSPEMG00000018236) #21	Sanbr (ENSPEMG00000002385) #22	1700093K21Rik (ENSPEMG00000004943)	Ahsa2 (ENSPEMG00000008242) #24	Usp34 (ENSPEMG00000013241) #25	Xpo1 (ENSPEMG00000010103) #26	ENSPEMG00000011408	Cct4 (ENSPEMG00000014381)	Commd1 (ENSPEMG00000008857)	ENSPEMG00000013373	B3gnt2 (ENSPEMG00000030694)	ENSPEMG00000029232	Tmem17 (ENSPEMG00000012666)	Ehbp1 (ENSPEMG00000014061)	Otx1 (ENSPEMG00000027636)	Wdpcp (ENSPEMG00000016341)	Mdh1 (ENSPEMG00000007456)
Cricetinae	ANCESTRAL SPECIES	37	ENSGT00900000141103	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583
Chinese hamster chok1gshd	MODERN SPECIES	121	Cfap36 (ENSCGRG00001018180) #9	Ppp4r3b (ENSCGRG00001001075) #10	Pnpt1 (ENSCGRG00001012245) #11	Efemp1 (ENSCGRG00001021048) #12	Ccdc85a (ENSCGRG00001018553) #13	ENSCGRG00001024293	ENSCGRG00001021821	Vrk2 (ENSCGRG00001013709) #14	Fancl (ENSCGRG00001020523) #15	Bcl11a (ENSCGRG00001014052) #16	Papolg (ENSCGRG00001014951) #18	ENSCGRG00001011053	Rel (ENSCGRG00001012159) #19	Pus10 (ENSCGRG00001015226) #20	Pex13 (ENSCGRG00001006134) #21	Sanbr (ENSCGRG00001018010) #22	1700093K21Rik (ENSCGRG00001014409)	Ahsa2 (ENSCGRG00001004669) #24	Usp34 (ENSCGRG00001006322) #25	Xpo1 (ENSCGRG00001000263) #26	ENSCGRG00001013463	Cct4 (ENSCGRG00001016718)	ENSCGRG00001007132	Commd1 (ENSCGRG00001007842)	B3gnt2 (ENSCGRG00001005196)	ENSCGRG00001025059	Tmem17 (ENSCGRG00001024384)	Ehbp1 (ENSCGRG00001022633)	Otx1 (ENSCGRG00001017328)	Wdpcp (ENSCGRG00001012886)	ENSCGRG00001023990
Golden Hamster	MODERN SPECIES	639	Ccdc88a (ENSMAUG00000013658) #7	Cfap36 (ENSMAUG00000013908) #9	Ppp4r3b (ENSMAUG00000019092) #10	Pnpt1 (ENSMAUG00000013652) #11	ENSMAUG00000013186	Efemp1 (ENSMAUG00000019647) #12	Ccdc85a (ENSMAUG00000020899) #13	ENSMAUG00000001312	Vrk2 (ENSMAUG00000013376) #14	Fancl (ENSMAUG00000012141) #15	Bcl11a (ENSMAUG00000010170) #16	Papolg (ENSMAUG00000009088) #18	Rel (ENSMAUG00000020172) #19	Pus10 (ENSMAUG00000007507) #20	ENSMAUG00000009603 #21	ENSMAUG00000007138 #22	1700093K21Rik (ENSMAUG00000002621)	Ahsa2 (ENSMAUG00000019192) #24	Usp34 (ENSMAUG00000015413) #25	Xpo1 (ENSMAUG00000006769) #26	ENSMAUG00000012775	Cct4 (ENSMAUG00000000518)	Commd1 (ENSMAUG00000010569)	B3gnt2 (ENSMAUG00000002963)	Tmem17 (ENSMAUG00000003448)	Ehbp1 (ENSMAUG00000000935)	Otx1 (ENSMAUG00000019114)	Wdpcp (ENSMAUG00000011349)	ENSMAUG00000012018	Mdh1 (ENSMAUG00000018086)	ENSMAUG00000012689
Murinae	ANCESTRAL SPECIES	12	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00800000125307	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00950000183152.A	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B
Mus	ANCESTRAL SPECIES	14	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00860000136227	ENSGT00390000005537 #15	ENSGT00860000136277	ENSGT00940000156983.a.a #16	ENSGT00800000125307	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00950000183152.A	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B
Mus_A	ANCESTRAL SPECIES	2	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00860000136227	ENSGT00390000005537 #15	ENSGT00860000136277	ENSGT00940000156983.a.a #16	ENSGT00800000125307	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00950000183152.A	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B
Ryukyu mouse	MODERN SPECIES	2	Cfap36 (MGP_CAROLIEiJ_G0016155) #9	Ppp4r3b (MGP_CAROLIEiJ_G0016154) #10	Pnpt1 (MGP_CAROLIEiJ_G0016153) #11	Efemp1 (MGP_CAROLIEiJ_G0016152) #12	Ccdc85a (MGP_CAROLIEiJ_G0016151) #13	MGP_CAROLIEiJ_G0016150	Vrk2 (MGP_CAROLIEiJ_G0016149) #14	Fancl (MGP_CAROLIEiJ_G0016148) #15	5730522E02Rik (MGP_CAROLIEiJ_G0016147)	Bcl11a (MGP_CAROLIEiJ_G0016146) #16	MGP_CAROLIEiJ_G0016145	Papolg (MGP_CAROLIEiJ_G0016144) #18	Rel (MGP_CAROLIEiJ_G0016143) #19	Pus10 (MGP_CAROLIEiJ_G0016142) #20	Pex13 (MGP_CAROLIEiJ_G0016141) #21	Sanbr (MGP_CAROLIEiJ_G0016140) #22	1700093K21Rik (MGP_CAROLIEiJ_G0016139)	Ahsa2 (MGP_CAROLIEiJ_G0016138) #24	Usp34 (MGP_CAROLIEiJ_G0016137) #25	Xpo1 (MGP_CAROLIEiJ_G0016136) #26	MGP_CAROLIEiJ_G0016135	Cct4 (MGP_CAROLIEiJ_G0016134)	MGP_CAROLIEiJ_G0016133	MGP_CAROLIEiJ_G0016132	B3gnt2 (MGP_CAROLIEiJ_G0016131)	MGP_CAROLIEiJ_G0016130	MGP_CAROLIEiJ_G0016129	Tmem17 (MGP_CAROLIEiJ_G0016128)	Ehbp1 (MGP_CAROLIEiJ_G0016127)	Otx1 (MGP_CAROLIEiJ_G0016126)	Wdpcp (MGP_CAROLIEiJ_G0016125)
Mus_B	ANCESTRAL SPECIES	2	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00860000136227	ENSGT00390000005537 #15	ENSGT00860000136277	ENSGT00940000156983.a.a #16	ENSGT00800000125307	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00950000183152.A	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B
Mouse	MODERN SPECIES	2	Ccdc88a (ENSMUSG00000032740) #7	Cfap36 (ENSMUSG00000020462) #9	Ppp4r3b (ENSMUSG00000020463) #10	Pnpt1 (ENSMUSG00000020464) #11	Efemp1 (ENSMUSG00000020467) #12	Ccdc85a (ENSMUSG00000032878) #13	Vrk2 (ENSMUSG00000064090) #14	Fancl (ENSMUSG00000004018) #15	5730522E02Rik (ENSMUSG00000032985)	Bcl11a (ENSMUSG00000000861) #16	A830031A19Rik (ENSMUSG00000055010)	Papolg (ENSMUSG00000020273) #18	Rel (ENSMUSG00000020275) #19	Pus10 (ENSMUSG00000020280) #20	Pex13 (ENSMUSG00000020283) #21	Sanbr (ENSMUSG00000042208) #22	1700093K21Rik (ENSMUSG00000020286)	Ahsa2 (ENSMUSG00000020288) #24	Usp34 (ENSMUSG00000056342) #25	Xpo1 (ENSMUSG00000020290) #26	Fam161a (ENSMUSG00000049811)	Cct4 (ENSMUSG00000007739)	Commd1 (ENSMUSG00000051355)	Commd1b (ENSMUSG00000098650)	B3gnt2 (ENSMUSG00000051650)	Tmem17 (ENSMUSG00000049904)	Ehbp1 (ENSMUSG00000042302)	Otx1 (ENSMUSG00000005917)	Wdpcp (ENSMUSG00000020319)	Mdh1 (ENSMUSG00000020321)	Ugp2 (ENSMUSG00000001891)
Mus_C	ANCESTRAL SPECIES	3	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00860000136227	ENSGT00390000005537 #15	ENSGT00860000136277	ENSGT00940000156983.a.a #16	ENSGT00800000125307	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00950000183152.A	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B
spretus	MODERN SPECIES	2	Cfap36 (MGP_SPRETEiJ_G0016998) #9	Ppp4r3b (MGP_SPRETEiJ_G0016997) #10	Pnpt1 (MGP_SPRETEiJ_G0016996) #11	Efemp1 (MGP_SPRETEiJ_G0016995) #12	Ccdc85a (MGP_SPRETEiJ_G0016994) #13	MGP_SPRETEiJ_G0016993	Vrk2 (MGP_SPRETEiJ_G0016992) #14	Fancl (MGP_SPRETEiJ_G0016991) #15	5730522E02Rik (MGP_SPRETEiJ_G0016990)	Bcl11a (MGP_SPRETEiJ_G0016989) #16	A830031A19Rik (MGP_SPRETEiJ_G0016988)	Papolg (MGP_SPRETEiJ_G0016987) #18	Rel (MGP_SPRETEiJ_G0016986) #19	Pus10 (MGP_SPRETEiJ_G0016985) #20	MGP_SPRETEiJ_G0016984 #21	Sanbr (MGP_SPRETEiJ_G0016983) #22	1700093K21Rik (MGP_SPRETEiJ_G0016982)	Ahsa2 (MGP_SPRETEiJ_G0016981) #24	Usp34 (MGP_SPRETEiJ_G0016980) #25	Xpo1 (MGP_SPRETEiJ_G0016979) #26	MGP_SPRETEiJ_G0016978	Cct4 (MGP_SPRETEiJ_G0016977)	MGP_SPRETEiJ_G0016976	Commd1 (MGP_SPRETEiJ_G0016975)	MGP_SPRETEiJ_G0016974	B3gnt2 (MGP_SPRETEiJ_G0016973)	MGP_SPRETEiJ_G0016972	Tmem17 (MGP_SPRETEiJ_G0016971)	Ehbp1 (MGP_SPRETEiJ_G0016970)	Otx1 (MGP_SPRETEiJ_G0016969)	Wdpcp (MGP_SPRETEiJ_G0016968)
Steppe mouse	MODERN SPECIES	3247				Vrk2 (ENSMSIG00000016313) #14	ENSMSIG00000016327	Fancl (ENSMSIG00000016331) #15	ENSMSIG00000016372	5730522E02Rik (ENSMSIG00000016387)	ENSMSIG00000016428	Bcl11a (ENSMSIG00000016492) #16	A830031A19Rik (ENSMSIG00000016521)	Papolg (ENSMSIG00000016545) #18	Rel (ENSMSIG00000016632) #19	Pus10 (ENSMSIG00000016644) #20	Pex13 (ENSMSIG00000016726) #21	Sanbr (ENSMSIG00000016739) #22	1700093K21Rik (ENSMSIG00000016897)	Ahsa2 (ENSMSIG00000016929) #24	ENSMSIG00000016975 #25
Shrew mouse	MODERN SPECIES	4	Cfap36 (MGP_PahariEiJ_G0016735) #9	Ppp4r3b (MGP_PahariEiJ_G0016736) #10	Pnpt1 (MGP_PahariEiJ_G0016737) #11	Efemp1 (MGP_PahariEiJ_G0016738) #12	Ccdc85a (MGP_PahariEiJ_G0016739) #13	Vrk2 (MGP_PahariEiJ_G0016740) #14	MGP_PahariEiJ_G0016741	Fancl (MGP_PahariEiJ_G0016742) #15	5730522E02Rik (MGP_PahariEiJ_G0016743)	Bcl11a (MGP_PahariEiJ_G0016744) #16	MGP_PahariEiJ_G0016745	Papolg (MGP_PahariEiJ_G0016746) #18	Rel (MGP_PahariEiJ_G0016747) #19	Pus10 (MGP_PahariEiJ_G0016748) #20	Pex13 (MGP_PahariEiJ_G0016749) #21	Sanbr (MGP_PahariEiJ_G0016750) #22	1700093K21Rik (MGP_PahariEiJ_G0016751)	Ahsa2 (MGP_PahariEiJ_G0016752) #24	MGP_PahariEiJ_G0016753 #25	Xpo1 (MGP_PahariEiJ_G0016754) #26	MGP_PahariEiJ_G0016755	Cct4 (MGP_PahariEiJ_G0016756)	Commd1 (MGP_PahariEiJ_G0016757)	MGP_PahariEiJ_G0016758	MGP_PahariEiJ_G0016759	B3gnt2 (MGP_PahariEiJ_G0016760)	MGP_PahariEiJ_G0016761	Tmem17 (MGP_PahariEiJ_G0016762)	Ehbp1 (MGP_PahariEiJ_G0016763)	Otx1 (MGP_PahariEiJ_G0016764)	MGP_PahariEiJ_G0016765
Rat	MODERN SPECIES	5	Pnpt1 (ENSRNOG00000003600) #11	Efemp1 (ENSRNOG00000003553) #12	Ccdc85a (ENSRNOG00000003374) #13	ENSRNOG00000064097	ENSRNOG00000065699	Vrk2 (ENSRNOG00000007864) #14	Fancl (ENSRNOG00000027249) #15	Bcl11a (ENSRNOG00000007049) #16	ENSRNOG00000066359	AABR07016640.3 (ENSRNOG00000058991)	Papolg (ENSRNOG00000006261) #18	Rel (ENSRNOG00000054437) #19	Pus10 (ENSRNOG00000054151) #20	Pex13 (ENSRNOG00000054896) #21	ENSRNOG00000062465	Sanbr (ENSRNOG00000054669) #22	C14h2orf74 (ENSRNOG00000051590)	Ahsa2 (ENSRNOG00000052142) #24	LOC108352814 (ENSRNOG00000071093)	Usp34 (ENSRNOG00000051889) #25	Xpo1 (ENSRNOG00000009935) #26	Fam161a (ENSRNOG00000009881)	Cct4 (ENSRNOG00000009642)	Zrsr2-ps1 (ENSRNOG00000009639)	Commd1 (ENSRNOG00000009281)	B3gnt2 (ENSRNOG00000009267)	LOC100361636 (ENSRNOG00000033346)	AABR07016623.1 (ENSRNOG00000009240)	Tmem17 (ENSRNOG00000009220)	Ehbp1 (ENSRNOG00000008917)	Otx1 (ENSRNOG00000065081)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1270												Papolg (ENSNGAG00000001120) #18	Rel (ENSNGAG00000005092) #19	Pus10 (ENSNGAG00000009489) #20	Pex13 (ENSNGAG00000012683) #21	ENSNGAG00000015574 #22	1700093K21Rik (ENSNGAG00000023598)	Ahsa2 (ENSNGAG00000008076) #24	Usp34 (ENSNGAG00000023618) #25	Xpo1 (ENSNGAG00000022158) #26	ENSNGAG00000002122	Cct4 (ENSNGAG00000023486)	Commd1 (ENSNGAG00000019828)	ENSNGAG00000011974	B3gnt2 (ENSNGAG00000022382)	ENSNGAG00000018903
Lesser Egyptian jerboa	MODERN SPECIES	121									ENSJJAG00000020525 #17	Bcl11a (ENSJJAG00000018059) #16	Papolg (ENSJJAG00000015601) #18	ENSJJAG00000012411	Rel (ENSJJAG00000015584) #19	Pus10 (ENSJJAG00000006862) #20	Pex13 (ENSJJAG00000019503) #21	Sanbr (ENSJJAG00000023772) #22	1700093K21Rik (ENSJJAG00000019388)	Ahsa2 (ENSJJAG00000014319) #24	Usp34 (ENSJJAG00000012692) #25	Xpo1 (ENSJJAG00000020468) #26	ENSJJAG00000017279	ENSJJAG00000016945	ENSJJAG00000019143	Robo2 (ENSJJAG00000023715)	Robo1 (ENSJJAG00000022393)	ENSJJAG00000018079	Gbe1 (ENSJJAG00000014497)	ENSJJAG00000000126	ENSJJAG00000021246
Kangaroo rat	MODERN SPECIES	382										Bcl11a (ENSDORG00000010064) #16	Papolg (ENSDORG00000016228) #18	ENSDORG00000030049	Rel (ENSDORG00000011388) #19	Pus10 (ENSDORG00000005550) #20	Pex13 (ENSDORG00000009725) #21	ENSDORG00000011221 #22	ENSDORG00000011227	Ahsa2 (ENSDORG00000012061) #24	Usp34 (ENSDORG00000012062) #25	Xpo1 (ENSDORG00000013050) #26	ENSDORG00000026102	Cct4 (ENSDORG00000002542)	Commd1 (ENSDORG00000001166)	ENSDORG00000027292	B3gnt2 (ENSDORG00000024683)	Tmem17 (ENSDORG00000024954)	Ehbp1 (ENSDORG00000002628)	ENSDORG00000023858	Otx1 (ENSDORG00000024553)	Wdpcp (ENSDORG00000003329)	ENSDORG00000009021
Lagomorpha	ANCESTRAL SPECIES	10	ENSGT00900000141103	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824.c	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583
Rabbit	MODERN SPECIES	11	CCDC88A (ENSOCUG00000003620) #7	CFAP36 (ENSOCUG00000006874) #9	PPP4R3B (ENSOCUG00000006880) #10	PNPT1 (ENSOCUG00000006889) #11	EFEMP1 (ENSOCUG00000014657) #12	ENSOCUG00000038290	CCDC85A (ENSOCUG00000003491) #13	ENSOCUG00000029918	VRK2 (ENSOCUG00000007388) #14	FANCL (ENSOCUG00000005105) #15	BCL11A (ENSOCUG00000023948) #16	PAPOLG (ENSOCUG00000004962) #18	REL (ENSOCUG00000004968) #19	PUS10 (ENSOCUG00000007867) #20	PEX13 (ENSOCUG00000007894) #21	SANBR (ENSOCUG00000009559) #22	C2orf74 (ENSOCUG00000029395)	ENSOCUG00000017817 #24	USP34 (ENSOCUG00000017819) #25	XPO1 (ENSOCUG00000004986) #26	ENSOCUG00000000707	CCT4 (ENSOCUG00000024386)	COMMD1 (ENSOCUG00000001093)	B3GNT2 (ENSOCUG00000017281)	TMEM17 (ENSOCUG00000010487)	ENSOCUG00000037865	EHBP1 (ENSOCUG00000013563)	OTX1 (ENSOCUG00000021773)	WDPCP (ENSOCUG00000006156)	MDH1 (ENSOCUG00000006166)	ENSOCUG00000002137
Pika	MODERN SPECIES	2720														PUS10 (ENSOPRG00000009676) #20	PEX13 (ENSOPRG00000009709) #21	SANBR (ENSOPRG00000009727) #22
Tree shrew	MODERN SPECIES	5513																SANBR (ENSTBEG00000007693) #22
Laurasiatheria	ANCESTRAL SPECIES	13	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00950000185458	ENSGT00800000125307	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT01030000236025	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000168989	ENSGT00940000153464.B
Laurasiatheria_a	ANCESTRAL SPECIES	17	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00950000185458	ENSGT00800000125307	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT01030000236025	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT01000000221758	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B
Artiodactyla	ANCESTRAL SPECIES	16	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT01030000234791	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT01000000221758	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B
Suina	ANCESTRAL SPECIES	13	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT01030000234791	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583
Pig	MODERN SPECIES	11	EFEMP1 (ENSSSCG00000008397) #12	CCDC85A (ENSSSCG00000008396) #13	ENSSSCG00000051591	ENSSSCG00000044774	ENSSSCG00000050174	ENSSSCG00000054360	ENSSSCG00000041087	VRK2 (ENSSSCG00000008395) #14	FANCL (ENSSSCG00000008394) #15	BCL11A (ENSSSCG00000008392) #16	PAPOLG (ENSSSCG00000008389) #18	REL (ENSSSCG00000008388) #19	PUS10 (ENSSSCG00000008385) #20	ENSSSCG00000062269	ENSSSCG00000053455	SANBR (ENSSSCG00000008386) #22	C2orf74 (ENSSSCG00000008384)	ENSSSCG00000008383 #24	ENSSSCG00000047643	USP34 (ENSSSCG00000008382) #25	XPO1 (ENSSSCG00000028228) #26	ENSSSCG00000038591	FAM161A (ENSSSCG00000008378)	CCT4 (ENSSSCG00000008377)	COMMD1 (ENSSSCG00000008376)	B3GNT2 (ENSSSCG00000008374)	ENSSSCG00000028518	TMEM17 (ENSSSCG00000026713)	EHBP1 (ENSSSCG00000008372)	OTX1 (ENSSSCG00000037564)	ENSSSCG00000030195
Chacoan peccary	MODERN SPECIES	777	ENSCWAG00000011162	CCDC88A (ENSCWAG00000011225) #7	ENSCWAG00000011671	CFAP36 (ENSCWAG00000011704) #9	PPP4R3B (ENSCWAG00000011953) #10	PNPT1 (ENSCWAG00000012067) #11	EFEMP1 (ENSCWAG00000012335) #12	CCDC85A (ENSCWAG00000012389) #13	VRK2 (ENSCWAG00000012464) #14	FANCL (ENSCWAG00000012564) #15	BCL11A (ENSCWAG00000012881) #16	PAPOLG (ENSCWAG00000013291) #18	REL (ENSCWAG00000013351) #19	PUS10 (ENSCWAG00000013466) #20	PEX13 (ENSCWAG00000013501) #21	SANBR (ENSCWAG00000013586) #22	C2orf74 (ENSCWAG00000013830)	ENSCWAG00000013858 #24	USP34 (ENSCWAG00000013898) #25	XPO1 (ENSCWAG00000014013) #26	FAM161A (ENSCWAG00000014151)	CCT4 (ENSCWAG00000014318)	ENSCWAG00000014428	B3GNT2 (ENSCWAG00000014453)	ENSCWAG00000014470	TMEM17 (ENSCWAG00000014499)	EHBP1 (ENSCWAG00000014544)	OTX1 (ENSCWAG00000014783)	ENSCWAG00000014828	MDH1 (ENSCWAG00000014856)	UGP2 (ENSCWAG00000014887)
Artiodactyla_a	ANCESTRAL SPECIES	15	ENSGT00900000141103	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT01000000221758	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B
Artiodactyla_b	ANCESTRAL SPECIES	14	ENSGT00900000141103	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT01000000221758	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B
Cetacea	ANCESTRAL SPECIES	16	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00960000187413	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B.i	ENSGT00390000000583
Odontoceti	ANCESTRAL SPECIES	15	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00960000187413	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00390000009320.ab.a.b	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000168989	ENSGT00390000002738.a.e.a
Odontoceti_a	ANCESTRAL SPECIES	12	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00960000187413	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00390000009320.ab.a.b	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a.l	ENSGT00940000168989	ENSGT00390000002738.a.e.a
Odontoceti_b	ANCESTRAL SPECIES	15	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00960000187413	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00390000009320.ab.a.b	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a.l	ENSGT00940000168989	ENSGT00390000002738.a.e.a
Monodontidae	ANCESTRAL SPECIES	13	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00960000187413	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00390000009320.ab.a.b	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000002190.a.a	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00950000182802.A.ab.a.a.a.a.b.b.a	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a.l
Narwhal	MODERN SPECIES	305	PNPT1 (ENSMMNG00015009732) #11	EFEMP1 (ENSMMNG00015009715) #12	ENSMMNG00015009688	CCDC85A (ENSMMNG00015009675) #13	ENSMMNG00015009666	VRK2 (ENSMMNG00015009641) #14	FANCL (ENSMMNG00015009614) #15	ENSMMNG00015009603	ENSMMNG00015009566	ENSMMNG00015009561	BCL11A (ENSMMNG00015009533) #16	PAPOLG (ENSMMNG00015009492) #18	REL (ENSMMNG00015009469) #19	PUS10 (ENSMMNG00015009444) #20	PEX13 (ENSMMNG00015009420) #21	SANBR (ENSMMNG00015009404) #22	ENSMMNG00015009388	C2orf74 (ENSMMNG00015009383)	ENSMMNG00015009370 #24	USP34 (ENSMMNG00015009324) #25	XPO1 (ENSMMNG00015009286) #26	FAM161A (ENSMMNG00015009266)	CCT4 (ENSMMNG00015009244)	COMMD1 (ENSMMNG00015009232)	B3GNT2 (ENSMMNG00015009227)	TMEM17 (ENSMMNG00015009216)	ENSMMNG00015009209	EHBP1 (ENSMMNG00015009174)	OTX1 (ENSMMNG00015009119)	WDPCP (ENSMMNG00015009094)	ENSMMNG00015009066
Beluga whale	MODERN SPECIES	42	PPP4R3B (ENSDLEG00000018255) #10	PNPT1 (ENSDLEG00000018213) #11	EFEMP1 (ENSDLEG00000018173) #12	CCDC85A (ENSDLEG00000018123) #13	ENSDLEG00000018110	VRK2 (ENSDLEG00000018085) #14	FANCL (ENSDLEG00000018072) #15	ENSDLEG00000018067	ENSDLEG00000018061	ENSDLEG00000018049	BCL11A (ENSDLEG00000018036) #16	PAPOLG (ENSDLEG00000016366) #18	REL (ENSDLEG00000016202) #19	PUS10 (ENSDLEG00000016154) #20	PEX13 (ENSDLEG00000016146) #21	SANBR (ENSDLEG00000015757) #22	ENSDLEG00000015718	AHSA2 (ENSDLEG00000015689) #24	USP34 (ENSDLEG00000014462) #25	XPO1 (ENSDLEG00000014180) #26	ENSDLEG00000014158 #26	FAM161A (ENSDLEG00000014083)	CCT4 (ENSDLEG00000014042)	COMMD1 (ENSDLEG00000014033)	B3GNT2 (ENSDLEG00000014023)	TMEM17 (ENSDLEG00000014013)	ENSDLEG00000014005	EHBP1 (ENSDLEG00000013833)	OTX1 (ENSDLEG00000013795)	WDPCP (ENSDLEG00000013723)	MDH1 (ENSDLEG00000013685)
Vaquita	MODERN SPECIES	4	CCDC88A (ENSPSNG00000011152) #7	CFAP36 (ENSPSNG00000011477) #9	PPP4R3B (ENSPSNG00000011711) #10	PNPT1 (ENSPSNG00000011856) #11	EFEMP1 (ENSPSNG00000011972) #12	CCDC85A (ENSPSNG00000012112) #13	VRK2 (ENSPSNG00000012211) #14	FANCL (ENSPSNG00000012345) #15	ENSPSNG00000012469	ENSPSNG00000012495	BCL11A (ENSPSNG00000012577) #16	PAPOLG (ENSPSNG00000012886) #18	REL (ENSPSNG00000012951) #19	PUS10 (ENSPSNG00000012999) #20	PEX13 (ENSPSNG00000013226) #21	SANBR (ENSPSNG00000013337) #22	C2orf74 (ENSPSNG00000013441)	ENSPSNG00000013561 #24	USP34 (ENSPSNG00000013671) #25	XPO1 (ENSPSNG00000013822) #26	FAM161A (ENSPSNG00000013947)	CCT4 (ENSPSNG00000014061)	COMMD1 (ENSPSNG00000014183)	ENSPSNG00000014227	B3GNT2 (ENSPSNG00000014249)	TMEM17 (ENSPSNG00000014288)	ENSPSNG00000014346	EHBP1 (ENSPSNG00000014468)	OTX1 (ENSPSNG00000014688)	WDPCP (ENSPSNG00000014770)	ENSPSNG00000015180
Dolphin	MODERN SPECIES	1409													REL (ENSTTRG00000013347) #19	PUS10 (ENSTTRG00000013351) #20	PEX13 (ENSTTRG00000013356) #21	SANBR (ENSTTRG00000013360) #22	ENSTTRG00000013364	ENSTTRG00000013366 #24	USP34 (ENSTTRG00000013368) #25	XPO1 (ENSTTRG00000013369) #26
Sperm whale	MODERN SPECIES	3	ENSPCTG00005004222	CCDC88A (ENSPCTG00005004286) #7	CFAP36 (ENSPCTG00005004568) #9	PPP4R3B (ENSPCTG00005004690) #10	PNPT1 (ENSPCTG00005004816) #11	EFEMP1 (ENSPCTG00005004884) #12	CCDC85A (ENSPCTG00005004953) #13	VRK2 (ENSPCTG00005004999) #14	FANCL (ENSPCTG00005005117) #15	ENSPCTG00005005243	BCL11A (ENSPCTG00005005291) #16	PAPOLG (ENSPCTG00005005387) #18	REL (ENSPCTG00005005467) #19	PUS10 (ENSPCTG00005005487) #20	PEX13 (ENSPCTG00005005540) #21	KIAA1841 (ENSPCTG00005005619) #22	ENSPCTG00005005788	C2orf74 (ENSPCTG00005005817)	ENSPCTG00005005896 #24	USP34 (ENSPCTG00005005959) #25	XPO1 (ENSPCTG00005006261) #26	FAM161A (ENSPCTG00005006353)	CCT4 (ENSPCTG00005006446)	COMMD1 (ENSPCTG00005006502)	B3GNT2 (ENSPCTG00005006518)	TMEM17 (ENSPCTG00005006531)	EHBP1 (ENSPCTG00005006603)	OTX1 (ENSPCTG00005006769)	WDPCP (ENSPCTG00005006829)	MDH1 (ENSPCTG00005007119)	ENSPCTG00005007304
Blue whale	MODERN SPECIES	4	ENSBMSG00010019475	CCDC88A (ENSBMSG00010019392) #7	CFAP36 (ENSBMSG00010019242) #9	PPP4R3B (ENSBMSG00010019067) #10	PNPT1 (ENSBMSG00010019007) #11	EFEMP1 (ENSBMSG00010018984) #12	CCDC85A (ENSBMSG00010018948) #13	ENSBMSG00010018923	VRK2 (ENSBMSG00010018903) #14	FANCL (ENSBMSG00010018794) #15	BCL11A (ENSBMSG00010018702) #16	PAPOLG (ENSBMSG00010018654) #18	REL (ENSBMSG00010018616) #19	PUS10 (ENSBMSG00010018581) #20	PEX13 (ENSBMSG00010018542) #21	SANBR (ENSBMSG00010018500) #22	C2orf74 (ENSBMSG00010018456)	ENSBMSG00010018430 #24	XPO1 (ENSBMSG00010017484) #26	ENSBMSG00010017465	ENSBMSG00010017432	CCT4 (ENSBMSG00010017396)	COMMD1 (ENSBMSG00010017362)	ENSBMSG00010017350	B3GNT2 (ENSBMSG00010017335)	TMEM17 (ENSBMSG00010017316)	EHBP1 (ENSBMSG00010016917)	OTX1 (ENSBMSG00010016810)	WDPCP (ENSBMSG00010016471)	MDH1 (ENSBMSG00010016335)	ENSBMSG00010016142
Pecora	ANCESTRAL SPECIES	5	ENSGT00900000141103	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000000455.b	ENSGT00390000009415	ENSGT00940000154096.b.b.b.a	ENSGT00950000183003.a.a.b	ENSGT00940000155238	ENSGT00940000160405	ENSGT00940000153259.a.b	ENSGT00390000000217	ENSGT00910000148474	ENSGT00940000154389.a	ENSGT00940000153518.d.b.b	ENSGT00950000183078.a	ENSGT00940000157101.d	ENSGT00940000160912	ENSGT00940000160996
Yarkand deer	MODERN SPECIES	2	PNPT1 (ENSCHYG00000024494) #11	EFEMP1 (ENSCHYG00000024634) #12	ENSCHYG00000024712	CCDC85A (ENSCHYG00000024756) #13	VRK2 (ENSCHYG00000024857) #14	FANCL (ENSCHYG00000024940) #15	ENSCHYG00000025005	BCL11A (ENSCHYG00000025057) #16	PAPOLG (ENSCHYG00000025213) #18	ENSCHYG00000025309	ENSCHYG00000025318	REL (ENSCHYG00000025330) #19	PUS10 (ENSCHYG00000025359) #20	ENSCHYG00000025415	ENSCHYG00000025436	SANBR (ENSCHYG00000025447) #22	GCFC2 (ENSCHYG00000025525)	MRPL19 (ENSCHYG00000025648)	ENSCHYG00000025694	SOWAHC (ENSCHYG00000025721)	SEPTIN10 (ENSCHYG00000025732)	SH3RF3 (ENSCHYG00000025787)	EDAR (ENSCHYG00000025811)	CCDC138 (ENSCHYG00000025853)	RANBP2 (ENSCHYG00000025929)	ENSCHYG00000026099	ENSCHYG00000026140	GCC2 (ENSCHYG00000026348)	SULT1C4 (ENSCHYG00000026384)	ENSCHYG00000026393	SULT1C2 (ENSCHYG00000026405)
Percora_a	ANCESTRAL SPECIES	13	ENSGT00900000141103	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000000455.b	ENSGT00390000008673.m	ENSGT00390000009415	ENSGT00940000154096.b.b.b.a	ENSGT00950000183003.a.a.b	ENSGT00940000155238	ENSGT00940000160405	ENSGT00940000153259.a.b	ENSGT00390000000217	ENSGT00910000148474	ENSGT00940000154389.a	ENSGT00940000153518.d.b.b	ENSGT00950000183078.a	ENSGT00940000157101.d	ENSGT00940000160912
Bovidae	ANCESTRAL SPECIES	5	ENSGT00900000141103	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000000455.b	ENSGT00390000008673.m	ENSGT00390000009415	ENSGT00940000153112.D.d	ENSGT00940000154096.b.b.b.a	ENSGT00950000183003.a.a.b	ENSGT00940000155238	ENSGT00940000160405	ENSGT00940000153259.a.b	ENSGT00390000000217	ENSGT00910000148474	ENSGT00940000154389.a	ENSGT00940000153518.d.b.b	ENSGT00950000183078.a	ENSGT00940000157101.d
Bovinae	ANCESTRAL SPECIES	4	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000166869	ENSGT00960000191051	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000000455.b	ENSGT00390000008673.m	ENSGT00390000009415	ENSGT00940000153112.D.d	ENSGT00940000154096.b.b.b.a	ENSGT00950000183003.a.a.b	ENSGT00940000155238	ENSGT00940000160405	ENSGT00940000153259.a.b	ENSGT00390000000217	ENSGT00910000148474	ENSGT00940000154389.a	ENSGT00940000153518.d.b.b	ENSGT00950000183078.a	ENSGT00940000157101.d
Bos	ANCESTRAL SPECIES	5	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000166869	ENSGT00960000191051	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000000455.b	ENSGT00390000008673.m	ENSGT00390000009415	ENSGT00940000153112.D.d	ENSGT00940000154096.b.b.b.a	ENSGT00950000183003.a.a.b	ENSGT00940000155238	ENSGT00940000160405	ENSGT00940000153259.a.b	ENSGT00390000000217	ENSGT00910000148474	ENSGT00940000154389.a	ENSGT00940000153518.d.b.b	ENSGT00950000183078.a	ENSGT00940000157101.d.l
Bos_b	ANCESTRAL SPECIES	9	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000166869	ENSGT00960000191051	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000000455.b	ENSGT00390000008673.m	ENSGT00390000009415	ENSGT00940000153112.D.d	ENSGT00940000154096.b.b.b.a	ENSGT00940000155238	ENSGT00940000160405	ENSGT00940000153259.a.b	ENSGT00390000000217	ENSGT00910000148474	ENSGT00940000154389.a	ENSGT00940000153518.d.b.b	ENSGT00950000183078.a	ENSGT00940000157101.d.l	ENSGT00940000160912
Hybrid Bos Indicus	MODERN SPECIES	2	CFAP36 (ENSBIXG00005017832) #9	PPP4R3B (ENSBIXG00005017770) #10	PNPT1 (ENSBIXG00005017706) #11	EFEMP1 (ENSBIXG00005017663) #12	CCDC85A (ENSBIXG00005002841) #13	ENSBIXG00005017352	VRK2 (ENSBIXG00005017329) #14	FANCL (ENSBIXG00005017270) #15	ENSBIXG00005017166	ENSBIXG00005017155	BCL11A (ENSBIXG00005017091) #16	PAPOLG (ENSBIXG00005016967) #18	REL (ENSBIXG00005016889) #19	PUS10 (ENSBIXG00005016829) #20	PEX13 (ENSBIXG00005016781) #21	SANBR (ENSBIXG00005016730) #22	GCFC2 (ENSBIXG00005007325)	MRPL19 (ENSBIXG00005016457)	ENSBIXG00005016421	ENSBIXG00005016402	ENSBIXG00005007030	SEPTIN10 (ENSBIXG00005016334)	SH3RF3 (ENSBIXG00005016145)	EDAR (ENSBIXG00005002560)	CCDC138 (ENSBIXG00005016061)	RANBP2 (ENSBIXG00005015929)	ENSBIXG00005005499	ENSBIXG00005014900	GCC2 (ENSBIXG00005014800)	SULT1C4 (ENSBIXG00005002082)	SULT1C2 (ENSBIXG00005014659)
Cow	MODERN SPECIES	2	PRORSD1 (ENSBTAG00000017460)	CCDC88A (ENSBTAG00000017469) #7	CFAP36 (ENSBTAG00000000542) #9	PPP4R3B (ENSBTAG00000000545) #10	PNPT1 (ENSBTAG00000008909) #11	EFEMP1 (ENSBTAG00000017448) #12	CCDC85A (ENSBTAG00000012394) #13	VRK2 (ENSBTAG00000033801) #14	FANCL (ENSBTAG00000005870) #15	ENSBTAG00000048348	BCL11A (ENSBTAG00000016534) #16	PAPOLG (ENSBTAG00000007414) #18	REL (ENSBTAG00000015386) #19	PUS10 (ENSBTAG00000009694) #20	PEX13 (ENSBTAG00000005257) #21	SANBR (ENSBTAG00000054531) #22	GCFC2 (ENSBTAG00000008048)	ENSBTAG00000053292	MRPL19 (ENSBTAG00000002557)	SEPTIN10 (ENSBTAG00000022461)	SH3RF3 (ENSBTAG00000038011)	EDAR (ENSBTAG00000019628)	CCDC138 (ENSBTAG00000000157)	RANBP2 (ENSBTAG00000000152)	ENSBTAG00000054181	LIMS1 (ENSBTAG00000010971)	GCC2 (ENSBTAG00000016038)	ENSBTAG00000054241	SULT1C4 (ENSBTAG00000032051)	SULT1C2 (ENSBTAG00000038369)	ENSBTAG00000054883
Bos_a	ANCESTRAL SPECIES	6	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000166869	ENSGT00960000191051	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000000455.b	ENSGT00390000009415	ENSGT00940000153112.D.d	ENSGT00940000154096.b.b.b.a	ENSGT00950000183003.a.a.b	ENSGT00940000155238	ENSGT00940000160405	ENSGT00940000153259.a.b	ENSGT00390000000217	ENSGT00910000148474	ENSGT00940000154389.a	ENSGT00940000153518.d.b.b	ENSGT00950000183078.a	ENSGT00940000157101.d.l	ENSGT00940000160912
Wild yak	MODERN SPECIES	197												PAPOLG (ENSBMUG00000004430) #18	REL (ENSBMUG00000004455) #19	PUS10 (ENSBMUG00000004482) #20	PEX13 (ENSBMUG00000004496) #21	SANBR (ENSBMUG00000004535) #22	GCFC2 (ENSBMUG00000004657)	MRPL19 (ENSBMUG00000004686)	ENSBMUG00000004697	EVA1A (ENSBMUG00000004741)	SEPTIN10 (ENSBMUG00000004797)
Domestic yak	MODERN SPECIES	28	ENSBGRG00000019073	EFEMP1 (ENSBGRG00000019118) #12	CCDC85A (ENSBGRG00000005833) #13	VRK2 (ENSBGRG00000005937) #14	FANCL (ENSBGRG00000006017) #15	ENSBGRG00000006305	ENSBGRG00000006414	ENSBGRG00000006434	BCL11A (ENSBGRG00000006493) #16	PAPOLG (ENSBGRG00000006713) #18	REL (ENSBGRG00000007184) #19	PUS10 (ENSBGRG00000007339) #20	PEX13 (ENSBGRG00000007532) #21	ENSBGRG00000007564	ENSBGRG00000007576	SANBR (ENSBGRG00000007616) #22	GCFC2 (ENSBGRG00000007889)	MRPL19 (ENSBGRG00000008224)	ENSBGRG00000008367	EVA1A (ENSBGRG00000008439)	SOWAHC (ENSBGRG00000008519)	SEPTIN10 (ENSBGRG00000008553)	SH3RF3 (ENSBGRG00000008832)	EDAR (ENSBGRG00000008919)	CCDC138 (ENSBGRG00000008976)	RANBP2 (ENSBGRG00000009160)	ENSBGRG00000010096	ENSBGRG00000010147	GCC2 (ENSBGRG00000010965)	SULT1C4 (ENSBGRG00000011492)	SULT1C2 (ENSBGRG00000011842)
American bison	MODERN SPECIES	3344					ENSBBBG00000022184	VRK2 (ENSBBBG00000022177) #14	FANCL (ENSBBBG00000022110) #15	ENSBBBG00000005815	ENSBBBG00000021993	ENSBBBG00000005813	ENSBBBG00000021975 #16	PAPOLG (ENSBBBG00000021917) #18	REL (ENSBBBG00000005796) #19	PUS10 (ENSBBBG00000007680) #20	PEX13 (ENSBBBG00000021817) #21	SANBR (ENSBBBG00000021794) #22	GCFC2 (ENSBBBG00000005750)	MRPL19 (ENSBBBG00000005745)	ENSBBBG00000021566	ENSBBBG00000021556	EVA1A (ENSBBBG00000021541)	SEPTIN10 (ENSBBBG00000021522)	SH3RF3 (ENSBBBG00000021463)	EDAR (ENSBBBG00000021445)	CCDC138 (ENSBBBG00000021433)	RANBP2 (ENSBBBG00000005701)	ENSBBBG00000020842	ENSBBBG00000020809	GCC2 (ENSBBBG00000020700)	SULT1C4 (ENSBBBG00000020676)	SULT1C2 (ENSBBBG00000000502)
Caprinae	ANCESTRAL SPECIES	9	ENSGT00940000155559.b #7	ENSGT00390000012785.c #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000164950	ENSGT00910000147025 #17	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000000455.b	ENSGT00390000009415	ENSGT00940000153112.D.d	ENSGT00940000154096.b.b.b.a	ENSGT00940000155238	ENSGT00940000160405	ENSGT00940000153259.a.b	ENSGT00390000000217	ENSGT00940000154389.a	ENSGT00910000148474	ENSGT00940000153518.d.b.b	ENSGT00950000183078.a	ENSGT00940000157101.d	ENSGT00940000160912	ENSGT00940000160996
Rambouillet Sheep	MODERN SPECIES	19	ENSOARG00020000668	CCDC88A (ENSOARG00020000430) #7	CFAP36 (ENSOARG00020000353) #9	PPP4R3B (ENSOARG00020000304) #10	PNPT1 (ENSOARG00020000229) #11	EFEMP1 (ENSOARG00020000199) #12	CCDC85A (ENSOARG00020003231) #13	FANCL (ENSOARG00020003084) #15	ENSOARG00020003034	ENSOARG00020003018 #19	BCL11A (ENSOARG00020002953) #16	PAPOLG (ENSOARG00020002875) #18	REL (ENSOARG00020002832) #19	PUS10 (ENSOARG00020002818) #20	PEX13 (ENSOARG00020002802) #21	SANBR (ENSOARG00020002778) #22	MRPL19 (ENSOARG00020002714)	ENSOARG00020002681	ENSOARG00020002672	EVA1A (ENSOARG00020002662)	SEPTIN10 (ENSOARG00020002613)	CCDC138 (ENSOARG00020002474)	RANBP2 (ENSOARG00020002287)	ENSOARG00020002071	ENSOARG00020001948	SLC5A7 (ENSOARG00020001925)	ST6GAL2 (ENSOARG00020001914)	ENSOARG00020001906	UXS1 (ENSOARG00020001860)	ECRG4 (ENSOARG00020001846)	NCK2 (ENSOARG00020001838)
Goat	MODERN SPECIES	2	ENSCHIG00000007261 #9	PPP4R3B (ENSCHIG00000010142) #10	PNPT1 (ENSCHIG00000025034) #11	EFEMP1 (ENSCHIG00000021066) #12	CCDC85A (ENSCHIG00000016770) #13	ENSCHIG00000020893	VRK2 (ENSCHIG00000017032) #14	ENSCHIG00000018980 #15	ENSCHIG00000015459	BCL11A (ENSCHIG00000013420) #16	ENSCHIG00000009852 #17	PAPOLG (ENSCHIG00000015082) #18	REL (ENSCHIG00000019857) #19	PUS10 (ENSCHIG00000011118) #20	PEX13 (ENSCHIG00000013394) #21	SANBR (ENSCHIG00000026182) #22	GCFC2 (ENSCHIG00000015942)	MRPL19 (ENSCHIG00000018687)	ENSCHIG00000026172	EVA1A (ENSCHIG00000014290)	SEPTIN10 (ENSCHIG00000025630)	SH3RF3 (ENSCHIG00000015843)	EDAR (ENSCHIG00000024441)	CCDC138 (ENSCHIG00000015627)	RANBP2 (ENSCHIG00000012686)	ENSCHIG00000009712	ENSCHIG00000022414	GCC2 (ENSCHIG00000007988)	SULT1C4 (ENSCHIG00000013564)	SULT1C2 (ENSCHIG00000020949)	SULT1C3 (ENSCHIG00000023114)
Siberian musk deer	MODERN SPECIES	243	PPP4R3B (ENSMMSG00000003900) #10	PNPT1 (ENSMMSG00000003861) #11	EFEMP1 (ENSMMSG00000003787) #12	CCDC85A (ENSMMSG00000003729) #13	ENSMMSG00000003697	ENSMMSG00000003681	ENSMMSG00000003672	VRK2 (ENSMMSG00000003653) #14	FANCL (ENSMMSG00000003612) #15	ENSMMSG00000003585	BCL11A (ENSMMSG00000003548) #16	PAPOLG (ENSMMSG00000003433) #18	REL (ENSMMSG00000003384) #19	PUS10 (ENSMMSG00000003350) #20	PEX13 (ENSMMSG00000003332) #21	SANBR (ENSMMSG00000003218) #22	GCFC2 (ENSMMSG00000003101)	ENSMMSG00000003071	MRPL19 (ENSMMSG00000003046)	EVA1A (ENSMMSG00000003011)	SEPTIN10 (ENSMMSG00000002940)	SH3RF3 (ENSMMSG00000002874)	EDAR (ENSMMSG00000002839)	CCDC138 (ENSMMSG00000002771)	ENSMMSG00000002741	RANBP2 (ENSMMSG00000002635)	ENSMMSG00000002470	GCC2 (ENSMMSG00000002364)	SULT1C4 (ENSMMSG00000002332)	SULT1C2 (ENSMMSG00000002303)	SULT1C3 (ENSMMSG00000002280)
Camelidae	ANCESTRAL SPECIES	12	ENSGT00900000141103	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583
Arabian camel	MODERN SPECIES	6	CCDC88A (ENSCDRG00005022438) #7	ENSCDRG00005022439	CFAP36 (ENSCDRG00005022440) #9	PPP4R3B (ENSCDRG00005022441) #10	PNPT1 (ENSCDRG00005022443) #11	EFEMP1 (ENSCDRG00005022444) #12	CCDC85A (ENSCDRG00005022445) #13	ENSCDRG00005003426	VRK2 (ENSCDRG00005003465) #14	FANCL (ENSCDRG00005003551) #15	BCL11A (ENSCDRG00005003770) #16	PAPOLG (ENSCDRG00005003794) #18	REL (ENSCDRG00005003849) #19	PUS10 (ENSCDRG00005003895) #20	PEX13 (ENSCDRG00005003948) #21	SANBR (ENSCDRG00005004059) #22	ENSCDRG00005004233	ENSCDRG00005004251 #24	ENSCDRG00005004262 #24	USP34 (ENSCDRG00005004329) #25	XPO1 (ENSCDRG00005004581) #26	FAM161A (ENSCDRG00005004663)	CCT4 (ENSCDRG00005004760)	COMMD1 (ENSCDRG00005004907)	B3GNT2 (ENSCDRG00005004917)	TMEM17 (ENSCDRG00005004930)	ENSCDRG00005004963	EHBP1 (ENSCDRG00005004989)	OTX1 (ENSCDRG00005005204)	WDPCP (ENSCDRG00005005228)	MDH1 (ENSCDRG00005005489)
Alpaca	MODERN SPECIES	78											BCL11A (ENSVPAG00000000491) #16	PAPOLG (ENSVPAG00000000492) #18	REL (ENSVPAG00000000493) #19	PUS10 (ENSVPAG00000000494) #20	PEX13 (ENSVPAG00000000495) #21	SANBR (ENSVPAG00000000496) #22	ENSVPAG00000000498	ENSVPAG00000000499
Laurasiatheria_b	ANCESTRAL SPECIES	17	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00950000185458	ENSGT00800000125307	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT01030000236025	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT01000000221758	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B
Carnivora	ANCESTRAL SPECIES	19	ENSGT01030000234791	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00950000185458	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT01030000236025	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT01000000221758	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B
Caniformia	ANCESTRAL SPECIES	18	ENSGT01030000234791	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00950000185458	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT01030000236025	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583
Caniformia_b	ANCESTRAL SPECIES	11	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT01030000234791	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583
Ursidae	ANCESTRAL SPECIES	9	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT01030000234791	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a.p	ENSGT00940000153464.B	ENSGT00390000000583
Giant Panda	MODERN SPECIES	14	ENSAMEG00000003982	CCDC88A (ENSAMEG00000003927) #7	ENSAMEG00000029692	CFAP36 (ENSAMEG00000003905) #9	PPP4R3B (ENSAMEG00000003843) #10	PNPT1 (ENSAMEG00000003772) #11	EFEMP1 (ENSAMEG00000003695) #12	CCDC85A (ENSAMEG00000003685) #13	VRK2 (ENSAMEG00000015844) #14	FANCL (ENSAMEG00000015826) #15	BCL11A (ENSAMEG00000015813) #16	PAPOLG (ENSAMEG00000018227) #18	REL (ENSAMEG00000018236) #19	PUS10 (ENSAMEG00000018240) #20	PEX13 (ENSAMEG00000018243) #21	SANBR (ENSAMEG00000018245) #22	C2orf74 (ENSAMEG00000018247)	ENSAMEG00000018248 #24	USP34 (ENSAMEG00000018249) #25	XPO1 (ENSAMEG00000003460) #26	FAM161A (ENSAMEG00000003523)	CCT4 (ENSAMEG00000003530)	COMMD1 (ENSAMEG00000008249)	B3GNT2 (ENSAMEG00000005508)	TMEM17 (ENSAMEG00000005503)	EHBP1 (ENSAMEG00000005488)	OTX1 (ENSAMEG00000026277)	WDPCP (ENSAMEG00000005449)	MDH1 (ENSAMEG00000005414)	ENSAMEG00000027202	PELI1 (ENSAMEG00000001167)
Ursus	ANCESTRAL SPECIES	20	ENSGT01030000234791	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00990000206080	ENSGT01030000236025	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00390000009819.a.a.o	ENSGT00530000063410.a.p	ENSGT00940000153464.B
Polar bear	MODERN SPECIES	223	ENSUMAG00000018821	CFAP36 (ENSUMAG00000018828) #9	PPP4R3B (ENSUMAG00000018833) #10	PNPT1 (ENSUMAG00000018844) #11	EFEMP1 (ENSUMAG00000018866) #12	ENSUMAG00000018900 #13	ENSUMAG00000018915	VRK2 (ENSUMAG00000018931) #14	FANCL (ENSUMAG00000018951) #15	BCL11A (ENSUMAG00000019056) #16	PAPOLG (ENSUMAG00000019081) #18	REL (ENSUMAG00000019086) #19	PUS10 (ENSUMAG00000019094) #20	ENSUMAG00000019099	PEX13 (ENSUMAG00000019100) #21	SANBR (ENSUMAG00000019109) #22	C2orf74 (ENSUMAG00000019220)	ENSUMAG00000019225 #24	ENSUMAG00000019230 #24	USP34 (ENSUMAG00000019333) #25	XPO1 (ENSUMAG00000019859) #26	ENSUMAG00000019866	FAM161A (ENSUMAG00000019872)	CCT4 (ENSUMAG00000019983)	COMMD1 (ENSUMAG00000020922)	B3GNT2 (ENSUMAG00000020928)	TMEM17 (ENSUMAG00000020931)	EHBP1 (ENSUMAG00000020940)	ENSUMAG00000020944	WDPCP (ENSUMAG00000020957)	ENSUMAG00000020964
Mustelinae	ANCESTRAL SPECIES	16									ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583	ENSGT00950000183050.b.b.a
American mink	MODERN SPECIES	109								VRK2 (ENSNVIG00000012761) #14	ENSNVIG00000012747	FANCL (ENSNVIG00000012633) #15	BCL11A (ENSNVIG00000012490) #16	PAPOLG (ENSNVIG00000012455) #18	REL (ENSNVIG00000012402) #19	PUS10 (ENSNVIG00000012384) #20	PEX13 (ENSNVIG00000012376) #21	K1841 (ENSNVIG00000012252) #22	C2orf74 (ENSNVIG00000012228)	ENSNVIG00000012222	ENSNVIG00000012217	USP34 (ENSNVIG00000012085) #25	XPO1 (ENSNVIG00000011993) #26	F161A (ENSNVIG00000011983)	CCT4 (ENSNVIG00000011941)	COMMD1 (ENSNVIG00000011903)	ENSNVIG00000011888	TMEM17 (ENSNVIG00000011866)	EHBP1 (ENSNVIG00000011813)	OTX1 (ENSNVIG00000011785)
Ferret	MODERN SPECIES	169				ENSMPUG00000005043	VRK2 (ENSMPUG00000005056) #14	FANCL (ENSMPUG00000005063) #15	ENSMPUG00000018814	ENSMPUG00000005122	ENSMPUG00000005129	ENSMPUG00000005140	ENSMPUG00000005161 #16	PAPOLG (ENSMPUG00000005165) #18	REL (ENSMPUG00000005180) #19	PUS10 (ENSMPUG00000005185) #20	ENSMPUG00000005228 #21	SANBR (ENSMPUG00000005235) #22	ENSMPUG00000005244	USP34 (ENSMPUG00000005248) #25	XPO1 (ENSMPUG00000005560) #26	FAM161A (ENSMPUG00000005585)	CCT4 (ENSMPUG00000005615)	COMMD1 (ENSMPUG00000005842)	B3GNT2 (ENSMPUG00000018818)	ENSMPUG00000005847	TMEM17 (ENSMPUG00000005851)	ENSMPUG00000005871	EHBP1 (ENSMPUG00000005877)	OTX1 (ENSMPUG00000005901)	ENSMPUG00000005912	WDPCP (ENSMPUG00000005918)	MDH1 (ENSMPUG00000005929)
Canidae	ANCESTRAL SPECIES	10	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00950000185458	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT01030000236025	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583	ENSGT00950000183050.b.b.a
Canis_lupus	ANCESTRAL SPECIES	9	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00950000185458	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT01030000236025	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00940000154546	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583
Dog	MODERN SPECIES	1	CCDC88A (ENSCAFG00845011215) #7	CFAP36 (ENSCAFG00845011709) #9	PPP4R3B (ENSCAFG00845011789) #10	PNPT1 (ENSCAFG00845011925) #11	EFEMP1 (ENSCAFG00845012060) #12	CCDC85A (ENSCAFG00845012276) #13	ENSCAFG00845012446	VRK2 (ENSCAFG00845012500) #14	FANCL (ENSCAFG00845012667) #15	BCL11A (ENSCAFG00845012955) #16	ENSCAFG00845013045	PAPOLG (ENSCAFG00845013090) #18	REL (ENSCAFG00845013250) #19	PUS10 (ENSCAFG00845013311) #20	PEX13 (ENSCAFG00845013355) #21	SANBR (ENSCAFG00845013376) #22	C2orf74 (ENSCAFG00845013418)	USP34 (ENSCAFG00845013490) #25	XPO1 (ENSCAFG00845016081) #26	FAM161A (ENSCAFG00845016188)	CCT4 (ENSCAFG00845016454)	COMMD1 (ENSCAFG00845016604)	B3GNT2 (ENSCAFG00845016685)	TMEM17 (ENSCAFG00845016745)	EHBP1 (ENSCAFG00845017216)	OTX1 (ENSCAFG00845018084)	WDPCP (ENSCAFG00845018266)	ENSCAFG00845018841	ENSCAFG00845018885	MDH1 (ENSCAFG00845019026)	UGP2 (ENSCAFG00845019476)
Dingo	MODERN SPECIES	307	PPP4R3B (ENSCAFG00020026838) #10	PNPT1 (ENSCAFG00020026841) #11	EFEMP1 (ENSCAFG00020026842) #12	CCDC85A (ENSCAFG00020026847) #13	ENSCAFG00020026848	ENSCAFG00020026849	VRK2 (ENSCAFG00020026850) #14	FANCL (ENSCAFG00020026851) #15	BCL11A (ENSCAFG00020026853) #16	ENSCAFG00020026854	PAPOLG (ENSCAFG00020026859) #18	REL (ENSCAFG00020026871) #19	ENSCAFG00020026873 #20	ENSCAFG00020026876	PEX13 (ENSCAFG00020026877) #21	SANBR (ENSCAFG00020026879) #22	C2orf74 (ENSCAFG00020026882)	USP34 (ENSCAFG00020026887) #25	ENSCAFG00020026910 #26	ENSCAFG00020026913 #26	FAM161A (ENSCAFG00020026916)	ENSCAFG00020026918	COMMD1 (ENSCAFG00020026920)	B3GNT2 (ENSCAFG00020026921)	TMEM17 (ENSCAFG00020026923)	EHBP1 (ENSCAFG00020026924)	OTX1 (ENSCAFG00020026926)	WDPCP (ENSCAFG00020026927)	ENSCAFG00020026930	ENSCAFG00020026931	MDH1 (ENSCAFG00020026933)
Red fox	MODERN SPECIES	10	CFAP36 (ENSVVUG00000010025) #9	PPP4R3B (ENSVVUG00000010031) #10	PNPT1 (ENSVVUG00000010034) #11	EFEMP1 (ENSVVUG00000010060) #12	CCDC85A (ENSVVUG00000010112) #13	ENSVVUG00000010147	ENSVVUG00000010149	VRK2 (ENSVVUG00000010175) #14	FANCL (ENSVVUG00000010209) #15	BCL11A (ENSVVUG00000010330) #16	ENSVVUG00000010337	PAPOLG (ENSVVUG00000010344) #18	REL (ENSVVUG00000010372) #19	PUS10 (ENSVVUG00000010405) #20	PEX13 (ENSVVUG00000010422) #21	SANBR (ENSVVUG00000010434) #22	C2orf74 (ENSVVUG00000010534)	USP34 (ENSVVUG00000010616) #25	XPO1 (ENSVVUG00000012009) #26	FAM161A (ENSVVUG00000012026)	CCT4 (ENSVVUG00000012040)	COMMD1 (ENSVVUG00000012078)	B3GNT2 (ENSVVUG00000012079)	TMEM17 (ENSVVUG00000012092)	EHBP1 (ENSVVUG00000012144)	OTX1 (ENSVVUG00000012226)	ENSVVUG00000012230	ENSVVUG00000012232	WDPCP (ENSVVUG00000012239)	ENSVVUG00000012256	ENSVVUG00000012263
Felidae	ANCESTRAL SPECIES	3	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00390000015489.q.b.a	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000166485.b	ENSGT00940000157824	ENSGT01000000221758	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a
Panthera	ANCESTRAL SPECIES	2	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00390000015489.q.b.a	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000166485.b	ENSGT00940000157824	ENSGT01000000221758	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a
Tiger	MODERN SPECIES	56	ENSPTIG00000020516	CCDC88A (ENSPTIG00000019432) #7	CFAP36 (ENSPTIG00000017775) #9	PPP4R3B (ENSPTIG00000016263) #10	PNPT1 (ENSPTIG00000014915) #11	EFEMP1 (ENSPTIG00000011247) #12	CCDC85A (ENSPTIG00000010582) #13	ENSPTIG00000009970	VRK2 (ENSPTIG00000008828) #14	FANCL (ENSPTIG00000020057) #15	BCL11A (ENSPTIG00000018807) #16	PAPOLG (ENSPTIG00000018126) #18	REL (ENSPTIG00000016976) #19	PUS10 (ENSPTIG00000015705) #20	PEX13 (ENSPTIG00000015161) #21	SANBR (ENSPTIG00000011564) #22	C2orf74 (ENSPTIG00000011235)	ENSPTIG00000010228 #24	ENSPTIG00000008945 #24	USP34 (ENSPTIG00000016516) #25	XPO1 (ENSPTIG00000012259) #26	FAM161A (ENSPTIG00000011182)	CCT4 (ENSPTIG00000009450)	COMMD1 (ENSPTIG00000008560)	B3GNT2 (ENSPTIG00000006426)	TMEM17 (ENSPTIG00000007396)	EHBP1 (ENSPTIG00000005411)	OTX1 (ENSPTIG00000021186)	WDPCP (ENSPTIG00000018461)	MDH1 (ENSPTIG00000015287)	UGP2 (ENSPTIG00000012159)
Panthera_a	ANCESTRAL SPECIES	1	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00390000015489.q.b.a	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000166485.b	ENSGT00940000157824	ENSGT01000000221758	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a
lion	MODERN SPECIES	3	CFAP36 (ENSPLOG00000001719) #9	PPP4R3B (ENSPLOG00000001621) #10	ENSPLOG00000001566 #11	ENSPLOG00000001555	EFEMP1 (ENSPLOG00000001526) #12	CCDC85A (ENSPLOG00000001494) #13	ENSPLOG00000001483	VRK2 (ENSPLOG00000001439) #14	FANCL (ENSPLOG00000001377) #15	BCL11A (ENSPLOG00000001289) #16	PAPOLG (ENSPLOG00000001210) #18	ENSPLOG00000001190	REL (ENSPLOG00000001176) #19	PUS10 (ENSPLOG00000001124) #20	PEX13 (ENSPLOG00000001084) #21	SANBR (ENSPLOG00000001051) #22	C2orf74 (ENSPLOG00000001023)	ENSPLOG00000001011 #24	USP34 (ENSPLOG00000000913) #25	XPO1 (ENSPLOG00000000831) #26	ENSPLOG00000000810	ENSPLOG00000000799	ENSPLOG00000000788	CCT4 (ENSPLOG00000000744)	ENSPLOG00000000693	COMMD1 (ENSPLOG00000000685)	B3GNT2 (ENSPLOG00000000672)	TMEM17 (ENSPLOG00000000647)	EHBP1 (ENSPLOG00000000545)	OTX1 (ENSPLOG00000000484)	WDPCP (ENSPLOG00000000468)
leopard	MODERN SPECIES		CCDC88A (ENSPPRG00000004530) #7	CFAP36 (ENSPPRG00000001887) #9	PPP4R3B (ENSPPRG00000001791) #10	PNPT1 (ENSPPRG00000001366) #11	EFEMP1 (ENSPPRG00000001293) #12	CCDC85A (ENSPPRG00000000770) #13	ENSPPRG00000000204	ENSPPRG00000000057	VRK2 (ENSPPRG00000022648) #14	FANCL (ENSPPRG00000022729) #15	BCL11A (ENSPPRG00000023125) #16	PAPOLG (ENSPPRG00000023250) #18	REL (ENSPPRG00000023390) #19	PUS10 (ENSPPRG00000023600) #20	PEX13 (ENSPPRG00000023891) #21	SANBR (ENSPPRG00000023999) #22	C2orf74 (ENSPPRG00000024210)	ENSPPRG00000024227 #24	ENSPPRG00000024371 #24	USP34 (ENSPPRG00000024570) #25	XPO1 (ENSPPRG00000024625) #26	ENSPPRG00000024662	FAM161A (ENSPPRG00000024716)	CCT4 (ENSPPRG00000024738)	COMMD1 (ENSPPRG00000024784)	B3GNT2 (ENSPPRG00000020752)	ENSPPRG00000024813	TMEM17 (ENSPPRG00000024820)	EHBP1 (ENSPPRG00000024840)	OTX1 (ENSPPRG00000024867)	WDPCP (ENSPPRG00000024890)
Cat	MODERN SPECIES	2	ENSFCAG00000004444	CCDC88A (ENSFCAG00000023941) #7	CFAP36 (ENSFCAG00000003522) #9	PPP4R3B (ENSFCAG00000026457) #10	PNPT1 (ENSFCAG00000013236) #11	EFEMP1 (ENSFCAG00000000792) #12	CCDC85A (ENSFCAG00000000794) #13	VRK2 (ENSFCAG00000022979) #14	FANCL (ENSFCAG00000031618) #15	BCL11A (ENSFCAG00000027154) #16	PAPOLG (ENSFCAG00000026126) #18	ENSFCAG00000045350	REL (ENSFCAG00000008018) #19	PUS10 (ENSFCAG00000008019) #20	ENSFCAG00000028969 #21	SANBR (ENSFCAG00000014456) #22	CA3H2orf74 (ENSFCAG00000019120)	ENSFCAG00000009473 #24	USP34 (ENSFCAG00000009478) #25	XPO1 (ENSFCAG00000002702) #26	ENSFCAG00000049089	FAM161A (ENSFCAG00000011118)	CCT4 (ENSFCAG00000024322)	COMMD1 (ENSFCAG00000027737)	B3GNT2 (ENSFCAG00000009061)	TMEM17 (ENSFCAG00000046240)	EHBP1 (ENSFCAG00000026831)	OTX1 (ENSFCAG00000044742)	WDPCP (ENSFCAG00000006657)	MDH1 (ENSFCAG00000024183)	UGP2 (ENSFCAG00000018580)
Laurasiatheria_c	ANCESTRAL SPECIES	14	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00800000125307	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583
Chiroptera	ANCESTRAL SPECIES	10	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00950000185458	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583
Microchiroptera	ANCESTRAL SPECIES	14	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00950000185458	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583
Greater horseshoe bat	MODERN SPECIES	4	CCDC88A (ENSRFEG00010011717) #7	CFAP36 (ENSRFEG00010011559) #9	PPP4R3B (ENSRFEG00010011020) #10	ENSRFEG00010010932	PNPT1 (ENSRFEG00010010875) #11	EFEMP1 (ENSRFEG00010010797) #12	CCDC85A (ENSRFEG00010010546) #13	VRK2 (ENSRFEG00010010407) #14	FANCL (ENSRFEG00010010286) #15	BCL11A (ENSRFEG00010010081) #16	ENSRFEG00010010050	PAPOLG (ENSRFEG00010009986) #18	REL (ENSRFEG00010009957) #19	PUS10 (ENSRFEG00010009923) #20	PEX13 (ENSRFEG00010009877) #21	SANBR (ENSRFEG00010009789) #22	C2orf74 (ENSRFEG00010009703)	ENSRFEG00010009602 #24	USP34 (ENSRFEG00010009538) #25	XPO1 (ENSRFEG00010009458) #26	FAM161A (ENSRFEG00010009411)	ENSRFEG00010009347	COMMD1 (ENSRFEG00010009299)	B3GNT2 (ENSRFEG00010009289)	ENSRFEG00010009258	ENSRFEG00010009225	ENSRFEG00010009180	TMEM17 (ENSRFEG00010009150)	EHBP1 (ENSRFEG00010008993)	OTX1 (ENSRFEG00010008915)	WDPCP (ENSRFEG00010008801)
Microbat	MODERN SPECIES	943	CCDC88A (ENSMLUG00000016070) #7	CFAP36 (ENSMLUG00000003869) #9	ENSMLUG00000003875 #10	PNPT1 (ENSMLUG00000003886) #11	EFEMP1 (ENSMLUG00000003898) #12	CCDC85A (ENSMLUG00000007767) #13	VRK2 (ENSMLUG00000002069) #14	FANCL (ENSMLUG00000002077) #15	BCL11A (ENSMLUG00000010117) #16	ENSMLUG00000030390	ENSMLUG00000014903	PAPOLG (ENSMLUG00000009853) #18	REL (ENSMLUG00000007454) #19	PUS10 (ENSMLUG00000000082) #20	PEX13 (ENSMLUG00000025131) #21	SANBR (ENSMLUG00000007627) #22	C2orf74 (ENSMLUG00000027969)	ENSMLUG00000003408 #24	ENSMLUG00000027445	USP34 (ENSMLUG00000003414) #25	XPO1 (ENSMLUG00000010670) #26	FAM161A (ENSMLUG00000030514)	CCT4 (ENSMLUG00000016138)	ENSMLUG00000022697	B3GNT2 (ENSMLUG00000009924)	ENSMLUG00000027762	EHBP1 (ENSMLUG00000002314)	OTX1 (ENSMLUG00000002330)	WDPCP (ENSMLUG00000002336)	MDH1 (ENSMLUG00000002352)	UGP2 (ENSMLUG00000003123)
Megabat	MODERN SPECIES	8488																SANBR (ENSPVAG00000002985) #22
Equus	ANCESTRAL SPECIES	7	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00800000125307	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT01030000236025	ENSGT01090000263393	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583
Donkey	MODERN SPECIES	26	CCDC88A (ENSEASG00005001139) #7	ENSEASG00005001956	CFAP36 (ENSEASG00005001963) #9	PPP4R3B (ENSEASG00005001969) #10	PNPT1 (ENSEASG00005001974) #11	EFEMP1 (ENSEASG00005001986) #12	CCDC85A (ENSEASG00005002008) #13	VRK2 (ENSEASG00005002016) #14	FANCL (ENSEASG00005002021) #15	BCL11A (ENSEASG00005028807) #16	ENSEASG00005033063	PAPOLG (ENSEASG00005002038) #18	REL (ENSEASG00005002043) #19	PUS10 (ENSEASG00005002058) #20	ENSEASG00005038092	SANBR (ENSEASG00005002083) #22	C2orf74 (ENSEASG00005002091)	ENSEASG00005002092 #24	USP34 (ENSEASG00005002220) #25	XPO1 (ENSEASG00005007223) #26	ENSEASG00005007225	FAM161A (ENSEASG00005007228)	CCT4 (ENSEASG00005007230)	COMMD1 (ENSEASG00005007231)	ENSEASG00005007233	ENSEASG00005007234	B3GNT2 (ENSEASG00005032411)	TMEM17 (ENSEASG00005031233)	EHBP1 (ENSEASG00005007241)	OTX1 (ENSEASG00005007243)	WDPCP (ENSEASG00005007245)
Horse	MODERN SPECIES	6	ENSECAG00000036639	CCDC88A (ENSECAG00000006877) #7	CFAP36 (ENSECAG00000023883) #9	PPP4R3B (ENSECAG00000013819) #10	PNPT1 (ENSECAG00000020058) #11	EFEMP1 (ENSECAG00000010447) #12	CCDC85A (ENSECAG00000009888) #13	VRK2 (ENSECAG00000021408) #14	FANCL (ENSECAG00000017007) #15	BCL11A (ENSECAG00000008094) #16	PAPOLG (ENSECAG00000009859) #18	REL (ENSECAG00000003277) #19	PUS10 (ENSECAG00000014076) #20	ENSECAG00000059857	PEX13 (ENSECAG00000019622)	SANBR (ENSECAG00000019995) #22	C15H2orf74 (ENSECAG00000013166)	ENSECAG00000005107 #24	USP34 (ENSECAG00000022272) #25	ENSECAG00000059157	ENSECAG00000044596	ENSECAG00000060044	ENSECAG00000059740	XPO1 (ENSECAG00000024920) #26	FAM161A (ENSECAG00000024614)	CCT4 (ENSECAG00000016982)	ENSECAG00000060047	COMMD1 (ENSECAG00000016963)	B3GNT2 (ENSECAG00000016959)	ENSECAG00000032544	TMEM17 (ENSECAG00000015697)
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000008178 #22
Hedgehog	MODERN SPECIES	5501																ENSEEUG00000001635 #22
Common shrew	MODERN SPECIES	5329																SANBR (ENSSARG00000009699) #22
Atlantogenata	ANCESTRAL SPECIES	14	ENSGT00900000141103	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029
Xenarthra	ANCESTRAL SPECIES	352									ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26
Armadillo	MODERN SPECIES	2758						ENSDNOG00000043511	VRK2 (ENSDNOG00000007029) #14	FANCL (ENSDNOG00000007041) #15	ENSDNOG00000035251	ENSDNOG00000010776	BCL11A (ENSDNOG00000019842) #16	PAPOLG (ENSDNOG00000011326) #18	REL (ENSDNOG00000011359) #19	PUS10 (ENSDNOG00000001706) #20	PEX13 (ENSDNOG00000041265) #21	SANBR (ENSDNOG00000014791) #22	C2orf74 (ENSDNOG00000024848)	ENSDNOG00000040415 #24	USP34 (ENSDNOG00000003767) #25	XPO1 (ENSDNOG00000005805) #26
Sloth	MODERN SPECIES	4906																ENSCHOG00000007332 #22
Afrotheria	ANCESTRAL SPECIES	39	ENSGT00900000141103	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029
Tenrec	MODERN SPECIES	16155																SANBR (ENSETEG00000002578) #22
Afrotheria_a	ANCESTRAL SPECIES	36	ENSGT00900000141103	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b.b.a #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345
Hyrax	MODERN SPECIES	4540																SANBR (ENSPCAG00000008193) #22
Elephant	MODERN SPECIES	438	RPS27A (ENSLAFG00000023133)	MTIF2 (ENSLAFG00000007341)	ENSLAFG00000007344	CCDC88A (ENSLAFG00000007346) #7	CFAP36 (ENSLAFG00000017814) #9	PPP4R3B (ENSLAFG00000017825) #10	PNPT1 (ENSLAFG00000021462) #11	EFEMP1 (ENSLAFG00000009070) #12	CCDC85A (ENSLAFG00000002154) #13	VRK2 (ENSLAFG00000012268) #14	BCL11A (ENSLAFG00000003101) #16	PAPOLG (ENSLAFG00000010404) #18	REL (ENSLAFG00000013507) #19	PUS10 (ENSLAFG00000010782) #20	PEX13 (ENSLAFG00000000830) #21	SANBR (ENSLAFG00000016305) #22	ENSLAFG00000020666	USP34 (ENSLAFG00000016317) #25	XPO1 (ENSLAFG00000014553) #26	FAM161A (ENSLAFG00000029260)	CCT4 (ENSLAFG00000004344)	ENSLAFG00000030691	ENSLAFG00000004349	B3GNT2 (ENSLAFG00000002799)
Marsupialia	ANCESTRAL SPECIES	19	ENSGT00900000141103	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583
Marsupialia_b	ANCESTRAL SPECIES	9	ENSGT00900000141103	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00390000004911	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583
Diprotodontia	ANCESTRAL SPECIES	2	ENSGT00900000141103	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956.n	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583	ENSGT00950000183050.b.b.a
Diprotodontia_a	ANCESTRAL SPECIES	2	ENSGT00900000141103	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000157344 #24	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956.n	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583	ENSGT00950000183050.b.b.a
koala	MODERN SPECIES	20											BCL11A (ENSPCIG00000028097) #16	PAPOLG (ENSPCIG00000028094) #18	REL (ENSPCIG00000028091) #19	PUS10 (ENSPCIG00000028089) #20	PEX13 (ENSPCIG00000028088) #21	SANBR (ENSPCIG00000028080) #22	ENSPCIG00000028078 #24	ENSPCIG00000028076 #24	USP34 (ENSPCIG00000027791) #25	XPO1 (ENSPCIG00000027737) #26	ENSPCIG00000024939	ENSPCIG00000024933	ENSPCIG00000024931	COMMD1 (ENSPCIG00000024929)	ENSPCIG00000018941	B3GNT2 (ENSPCIG00000024925)	TMEM17 (ENSPCIG00000024919)	EHBP1 (ENSPCIG00000005257)	OTX1 (ENSPCIG00000024582)	ENSPCIG00000037374	WDPCP (ENSPCIG00000024581)
Common wonbat	MODERN SPECIES	1017	ENSVURG00010014135	CCDC88A (ENSVURG00010014027) #7	CFAP36 (ENSVURG00010013983) #9	ENSVURG00010013950 #10	PNPT1 (ENSVURG00010013927) #11	ENSVURG00010013924	EFEMP1 (ENSVURG00010013908) #12	CCDC85A (ENSVURG00010013878) #13	VRK2 (ENSVURG00010013840) #14	FANCL (ENSVURG00010013810) #15	BCL11A (ENSVURG00010013786) #16	PAPOLG (ENSVURG00010013767) #18	REL (ENSVURG00010013755) #19	PUS10 (ENSVURG00010013746) #20	PEX13 (ENSVURG00010013735) #21	SANBR (ENSVURG00010013712) #22	ENSVURG00010013697 #24	USP34 (ENSVURG00010013652) #25	XPO1 (ENSVURG00010013626) #26	ENSVURG00010013620	ENSVURG00010013612	CCT4 (ENSVURG00010013602)	COMMD1 (ENSVURG00010013596)	B3GNT2 (ENSVURG00010013583)	TMEM17 (ENSVURG00010013563)	EHBP1 (ENSVURG00010013361)	OTX1 (ENSVURG00010013336)	ENSVURG00010013329	WDPCP (ENSVURG00010013315)	MDH1 (ENSVURG00010013259)	UGP2 (ENSVURG00010013228)
Wallaby	MODERN SPECIES	6709																ENSMEUG00000016347 #22
Tasmanian devil	MODERN SPECIES	1	ENSSHAG00000003753	CCDC88A (ENSSHAG00000000522) #7	CFAP36 (ENSSHAG00000014593) #9	ENSSHAG00000014269 #10	PNPT1 (ENSSHAG00000030191) #11	EFEMP1 (ENSSHAG00000012927) #12	CCDC85A (ENSSHAG00000009530) #13	ENSSHAG00000028498	VRK2 (ENSSHAG00000007771) #14	FANCL (ENSSHAG00000007148) #15	BCL11A (ENSSHAG00000015804) #16	PAPOLG (ENSSHAG00000014942) #18	REL (ENSSHAG00000014405) #19	PUS10 (ENSSHAG00000014089) #20	PEX13 (ENSSHAG00000013994) #21	SANBR (ENSSHAG00000013637) #22	ENSSHAG00000013408	ENSSHAG00000013229 #24	USP34 (ENSSHAG00000012141) #25	XPO1 (ENSSHAG00000011230) #26	ENSSHAG00000008962	CCT4 (ENSSHAG00000008579)	B3GNT2 (ENSSHAG00000027237)	COMMD1 (ENSSHAG00000005803)	TMEM17 (ENSSHAG00000014235)	EHBP1 (ENSSHAG00000011490)	OTX1 (ENSSHAG00000011389)	WDPCP (ENSSHAG00000009447)	MDH1 (ENSSHAG00000008365)	UGP2 (ENSSHAG00000003089)	VPS54 (ENSSHAG00000000961)
Opossum	MODERN SPECIES		ENSMODG00000001935 #10	PNPT1 (ENSMODG00000001984) #11	EFEMP1 (ENSMODG00000002005) #12	CCDC85A (ENSMODG00000002041) #13	ENSMODG00000039070	ENSMODG00000040320	ENSMODG00000002056	ENSMODG00000002096 #14	FANCL (ENSMODG00000002105) #15	BCL11A (ENSMODG00000002114) #16	PAPOLG (ENSMODG00000002160) #18	ENSMODG00000042596	REL (ENSMODG00000002172) #19	PUS10 (ENSMODG00000002202) #20	PEX13 (ENSMODG00000002217) #21	SANBR (ENSMODG00000002252) #22	ENSMODG00000002285 #24	ENSMODG00000023119	USP34 (ENSMODG00000002734) #25	XPO1 (ENSMODG00000002831) #26	ENSMODG00000002850	ENSMODG00000002882	COMMD1 (ENSMODG00000002887)	B3GNT2 (ENSMODG00000023125)	TMEM17 (ENSMODG00000002895)	ENSMODG00000046978	EHBP1 (ENSMODG00000002986)	OTX1 (ENSMODG00000037978)	ENSMODG00000038398	WDPCP (ENSMODG00000003049)	MDH1 (ENSMODG00000003073)
Platypus	MODERN SPECIES	20	MTIF2 (ENSOANG00000011187)	ENSOANG00000011186	CCDC88A (ENSOANG00000011182) #7	CFAP36 (ENSOANG00000042731) #9	ENSOANG00000011179 #10	PNPT1 (ENSOANG00000011178) #11	EFEMP1 (ENSOANG00000011177) #12	CCDC85A (ENSOANG00000011176) #13	VRK2 (ENSOANG00000011175) #14	FANCL (ENSOANG00000011174) #15	BCL11A (ENSOANG00000020939) #16	PAPOLG (ENSOANG00000012403) #18	REL (ENSOANG00000012405) #19	PUS10 (ENSOANG00000012408) #20	PEX13 (ENSOANG00000012410) #21	SANBR (ENSOANG00000012411) #22	ENSOANG00000012414 #24	USP34 (ENSOANG00000012415) #25	XPO1 (ENSOANG00000012417) #26	ENSOANG00000012418	CCT4 (ENSOANG00000012419)	COMMD1 (ENSOANG00000012420)	B3GNT2 (ENSOANG00000012421)	TMEM17 (ENSOANG00000012422)	EHBP1 (ENSOANG00000012423)	OTX1 (ENSOANG00000044489)	WDPCP (ENSOANG00000012425)	MDH1 (ENSOANG00000012426)	UGP2 (ENSOANG00000012427)	VPS54 (ENSOANG00000012428)	PELI1 (ENSOANG00000012431)
Anura	ANCESTRAL SPECIES	16				ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000157361 #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583	ENSGT00950000183050.b.b.a	ENSGT00940000155337	ENSGT00940000154347.a
Frog	MODERN SPECIES	5	ppp4r3b (ENSXETG00000006072) #10	dusp16 (ENSXETG00000006075) #11	efemp1 (ENSXETG00000006076) #12	CCDC85A (ENSXETG00000006078) #13	vrk2 (ENSXETG00000020477) #14	fancl (ENSXETG00000020481) #15	ENSXETG00000020482	ENSXETG00000043268	bcl11a (ENSXETG00000002206) #16	papolg (ENSXETG00000002208) #18	ENSXETG00000047660	rel (ENSXETG00000002209) #19	ENSXETG00000048162 #8	pus10 (ENSXETG00000002210) #20	pex13 (ENSXETG00000002212) #21	sanbr (ENSXETG00000002217) #22	usp34 (ENSXETG00000002218) #25	xpo1 (ENSXETG00000002224) #26	fam161a (ENSXETG00000002233)	cct4 (ENSXETG00000002227)	commd1 (ENSXETG00000002235)	b3gnt2 (ENSXETG00000002237)	ehbp1 (ENSXETG00000013029)	otx1 (ENSXETG00000040503)	wdpcp (ENSXETG00000013020)	mdh1 (ENSXETG00000013016)	ugp2 (ENSXETG00000013007)	ENSXETG00000046337	vps54 (ENSXETG00000013000)	ENSXETG00000043346	peli1 (ENSXETG00000012997)
Leishan spiny toad	MODERN SPECIES	7	PNPT1 (ENSLLEG00000017678) #11	EFEMP1 (ENSLLEG00000018149) #12	CCDC85A (ENSLLEG00000018345) #13	ENSLLEG00000018431	VRK2 (ENSLLEG00000018470) #14	FANCL (ENSLLEG00000005345) #15	ENSLLEG00000005385	ENSLLEG00000005411	BCL11A (ENSLLEG00000005447) #16	ENSLLEG00000005603	ENSLLEG00000005610	PAPOLG (ENSLLEG00000005624) #18	REL (ENSLLEG00000005742) #19	PUS10 (ENSLLEG00000005786) #20	ENSLLEG00000005875	SANBR (ENSLLEG00000005906) #22	USP34 (ENSLLEG00000006009) #25	XPO1 (ENSLLEG00000006444) #26	ENSLLEG00000006618	FAM161A (ENSLLEG00000006638)	ENSLLEG00000006686	CCT4 (ENSLLEG00000006712)	COMMD1 (ENSLLEG00000006880)	ENSLLEG00000006902	B3GNT2 (ENSLLEG00000006916)	EHBP1 (ENSLLEG00000006950)	ENSLLEG00000007289	OTX1 (ENSLLEG00000007304)	WDPCP (ENSLLEG00000007365)	MDH1 (ENSLLEG00000007707)	ENSLLEG00000007978
Coelacanth	MODERN SPECIES	1863												PAPOLG (ENSLACG00000009543) #18	REL (ENSLACG00000008544) #19	PUS10 (ENSLACG00000007243) #20	ENSLACG00000007005	SANBR (ENSLACG00000005293) #22	ENSLACG00000002660 #23	ENSLACG00000000112
Actinopterygii	ANCESTRAL SPECIES	19	ENSGT00900000141103	ENSGT00440000033965	ENSGT00940000155559.b #7	ENSGT00390000012785 #9	ENSGT00390000018199.b #10	ENSGT00390000014001 #11	ENSGT00940000157837 #12	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00910000147025 #17	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583	ENSGT00950000183050.b.b.b.b	ENSGT00940000166587	ENSGT00940000155337
Neopterygii	ANCESTRAL SPECIES	3	ENSGT01050000244827.E	ENSGT00950000183029.B	ENSGT00940000166291	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b	ENSGT00940000153431.b	ENSGT00390000006916.c	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00910000147025 #17	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000163878	ENSGT00940000158659 #25	ENSGT00940000153408.B #26	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a	ENSGT00940000153464.B	ENSGT00390000000583	ENSGT00950000183050.b.b.b.b	ENSGT00940000166587
Osteoglossocephalai	ANCESTRAL SPECIES	92	ENSGT00940000154866.B.a	ENSGT00940000166683	ENSGT01030000234532.A.a.a.b.j.a	ENSGT00940000160412.b	ENSGT00940000157361.a #13	ENSGT00940000170402	ENSGT00940000157361.b #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00910000147025 #17	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000007529 #20	ENSGT00390000016883 #21	ENSGT00390000008178 #22
Clupeocephala	ANCESTRAL SPECIES	141	ENSGT00940000154866.B.a	ENSGT00940000166683.b	ENSGT00940000166683.a.a	ENSGT01030000234532.A.a.a.b.j.a	ENSGT00940000160412.b	ENSGT00940000157361.a #13	ENSGT00940000170402	ENSGT00940000157361.b #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00910000147025 #17	ENSGT00940000156983.a.a #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000157824.i.b	ENSGT00940000155345.q	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a.r	ENSGT00940000155337.ab	ENSGT00940000166587	ENSGT00950000183050.b.b.b.a.a.a.a	ENSGT00940000153464.B.z.b	ENSGT00530000063410.a.q.a
Otomorpha	ANCESTRAL SPECIES	10	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT00950000183029.B.i.b	ENSGT00940000166291	ENSGT00940000154866.B.a	ENSGT00940000166683.a.a	ENSGT01030000234532.A.a.a.b.j.a	ENSGT00940000160412.b	ENSGT00940000157361.a #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a.r #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.t #26	ENSGT00940000157824.i.b	ENSGT00940000155345.q	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a.r	ENSGT00940000153464.B.z.b	ENSGT00950000183050.b.b.b.a.a.a.a	ENSGT00940000166587	ENSGT00940000154186.a.q	ENSGT00940000177700	ENSGT00940000155337.ab	ENSGT00530000063867.b.b	ENSGT00940000157081
Clupeiformes	ANCESTRAL SPECIES	8	ENSGT00390000006619	ENSGT00940000163420	ENSGT00940000155483.f	ENSGT00390000015299.a.b.b.b.d.a	ENSGT00530000063557.b	ENSGT00940000154866.B.a	ENSGT00940000166683.a.a	ENSGT01030000234532.A.a.a.b.j.a	ENSGT00940000160412.b	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a.r #16	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.t #26	ENSGT00940000157824.i.b	ENSGT00940000155345.q	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a.r	ENSGT00940000153464.B.z.b	ENSGT00950000183050.b.b.b.a.a.a.a	ENSGT00940000166587	ENSGT00940000154186.a.q	ENSGT00940000155337.ab	ENSGT00530000063867.b.b	ENSGT00940000157081	ENSGT00810000125473.A
Atlantic herring	MODERN SPECIES	4	RIN2 (ENSCHAG00000012674)	MAP4K3 (ENSCHAG00000010211)	ENSCHAG00000010121	RIN2 (ENSCHAG00000010003)	ENSCHAG00000009989	ENSCHAG00000009404	ENSCHAG00000009372	soul2 (ENSCHAG00000009362)	ccdc85a (ENSCHAG00000009349) #13	vrk2 (ENSCHAG00000009283) #14	fancl (ENSCHAG00000009225) #15	bcl11aa (ENSCHAG00000009178) #16	papolg (ENSCHAG00000003904) #18	rel (ENSCHAG00000003607) #19	pex13 (ENSCHAG00000003593) #21	SANBR (ENSCHAG00000003275) #22	XPO1 (ENSCHAG00000002294) #26	ENSCHAG00000002206	b3gnt2b (ENSCHAG00000002175)	b3gnt2b (ENSCHAG00000002172)	EHBP1 (ENSCHAG00000001812)	otx1 (ENSCHAG00000001784)	WDPCP (ENSCHAG00000001434)	mdh1ab (ENSCHAG00000000940)	ENSCHAG00000000462	ENSCHAG00000019202	ugp2b (ENSCHAG00000018928)	peli1b (ENSCHAG00000018837)	ENSCHAG00000018691	ENSCHAG00000018667	ENSCHAG00000018678
Denticle herring	MODERN SPECIES	18	MAP4K3 (ENSDCDG00000022418)	ENSDCDG00000022410	RIN2 (ENSDCDG00000022405)	ENSDCDG00000022401	SLC24A3 (ENSDCDG00000022286)	soul2 (ENSDCDG00000022285)	ccdc85a (ENSDCDG00000022284) #13	vrk2 (ENSDCDG00000022282) #14	fancl (ENSDCDG00000022247) #15	ENSDCDG00000022243	ENSDCDG00000022240	bcl11aa (ENSDCDG00000022234) #16	papolg (ENSDCDG00000016269) #18	rel (ENSDCDG00000016031) #19	pex13 (ENSDCDG00000016023) #21	SANBR (ENSDCDG00000015943) #22	XPO1 (ENSDCDG00000015851) #26	ENSDCDG00000015816	b3gnt2b (ENSDCDG00000015811)	EHBP1 (ENSDCDG00000015700)	otx1 (ENSDCDG00000015687)	WDPCP (ENSDCDG00000015075)	mdh1ab (ENSDCDG00000015055)	ENSDCDG00000015051	ugp2b (ENSDCDG00000014366)	peli1b (ENSDCDG00000014302)	ENSDCDG00000014232	ENSDCDG00000014166	ENSDCDG00000014146	lgalslb (ENSDCDG00000014126)	sertad2b (ENSDCDG00000014115)
Otophysi	ANCESTRAL SPECIES	229	ENSGT00940000160793	ENSGT01100000263540.A.a	ENSGT00390000018613.a	ENSGT00950000183148.b.b	ENSGT00940000166409	ENSGT00940000154551.b	ENSGT00950000182805.a.b	ENSGT00510000048167.a	ENSGT00940000155068.a.b	ENSGT00940000161152	ENSGT01030000234606.a.a.a.b	ENSGT00700000104522	ENSGT00940000157593	ENSGT00390000017746	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.t.d.a #26	ENSGT00940000157824.i.b	ENSGT00940000155345.q	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a.q.a	ENSGT00940000153464.B.z.b	ENSGT00950000183050.b.b.b.a.a.a.a	ENSGT00940000166587
Characiphysae	ANCESTRAL SPECIES	54					ENSGT00940000166409	ENSGT00940000154551.b	ENSGT00950000182805.a.b	ENSGT00510000048167.a	ENSGT00940000155068.a.b	ENSGT00940000161152	ENSGT01030000234606.a.a.a.b	ENSGT00700000104522	ENSGT00940000157593	ENSGT00390000017746	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.t.d.a #26	ENSGT00940000157824.i.b	ENSGT00940000155345.q	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a.q.a	ENSGT00940000153464.B.z.b	ENSGT00950000183050.b.b.b.a.a.a.a	ENSGT00940000166587	ENSGT00940000174754	ENSGT00940000154186.a.q.g	ENSGT00940000177700	ENSGT00950000183148.b.b	ENSGT00390000018613.a
Channel catfish	MODERN SPECIES	28	ENSIPUG00000012138	rlf (ENSIPUG00000012207)	abhd12 (ENSIPUG00000012261)	hspa12a (ENSIPUG00000012353)	eno4 (ENSIPUG00000012457)	shtn1 (ENSIPUG00000012494)	ATP6V1B2 (ENSIPUG00000012539)	vax1 (ENSIPUG00000012584)	ENSIPUG00000012593	ENSIPUG00000012617	ENSIPUG00000012647	kcnk18 (ENSIPUG00000012673)	slc18a2 (ENSIPUG00000012691)	pdzd8 (ENSIPUG00000012766)	pex13 (ENSIPUG00000012783) #21	kiaa1841 (ENSIPUG00000012801) #22	Xpo1 (ENSIPUG00000012891) #26	b3gnt2b (ENSIPUG00000013024)	EHBP1 (ENSIPUG00000013044)	otx1 (ENSIPUG00000013113)	WDPCP (ENSIPUG00000013126)	MDH1 (ENSIPUG00000013164)	UGP2 (ENSIPUG00000013211)	peli1b (ENSIPUG00000013383)	abcG20 (ENSIPUG00000013458)	ENSIPUG00000013628	ENSIPUG00000013655	pygb (ENSIPUG00000013662)	ENSIPUG00000013756	ENTPD6 (ENSIPUG00000013815)	vsx1 (ENSIPUG00000013858)
Characiphysae_b	ANCESTRAL SPECIES	53				ENSGT00940000166409	ENSGT00940000154551.b	ENSGT00950000182805.a.b	ENSGT00510000048167.a	ENSGT00940000155068.a.b	ENSGT00940000161152	ENSGT01030000234606.a.a.a.b	ENSGT00940000165789	ENSGT00700000104522	ENSGT00940000157593	ENSGT00390000017746	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.t.d.a #26	ENSGT00940000157824.i.b	ENSGT00940000155345.q	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a.q.a	ENSGT00940000153464.B.z.b	ENSGT00950000183050.b.b.b.a.a.a.a	ENSGT00940000166587	ENSGT00940000154186.a.q.g.a	ENSGT00940000177700	ENSGT00950000183148.b.b	ENSGT00390000018613.a	ENSGT01100000263540.A.a
Characoidei	ANCESTRAL SPECIES	184													ENSGT00940000157593	ENSGT00390000017746	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.t.d.a #26	ENSGT01030000234592.A.a.a.b.f.b	ENSGT00950000183034.B	ENSGT00940000154718	ENSGT00940000159744	ENSGT00940000166228	ENSGT00940000158247	ENSGT00940000169877	ENSGT00940000159501	ENSGT00940000158233	ENSGT00940000157970	ENSGT00940000166510	ENSGT00940000159599	ENSGT00940000159314.h.a	ENSGT00390000017418
Red-bellied piranha	MODERN SPECIES	281															pex13 (ENSPNAG00000008939) #21	SANBR (ENSPNAG00000008936) #22	XPO1 (ENSPNAG00000008916) #26	ENSPNAG00000008850	ENSPNAG00000008841	ENSPNAG00000008830	ENSPNAG00000008823	pgrmc2 (ENSPNAG00000005404)	asmt2 (ENSPNAG00000001193)	jade1 (ENSPNAG00000006460)	si:dkey-221l4.10 (ENSPNAG00000008756)	rcan3 (ENSPNAG00000008738)	nipal3 (ENSPNAG00000008722)	GRHL3 (ENSPNAG00000001158)	ENSPNAG00000008688	cnksr1 (ENSPNAG00000001146)	rps6ka1 (ENSPNAG00000001134)
Mexicana tetra	MODERN SPECIES	24	ENSAMXG00000031958	ppp1r3ca (ENSAMXG00000037513)	ENSAMXG00000035906	ENSAMXG00000037348	ENSAMXG00000040245	ENSAMXG00000009017	FAM98A (ENSAMXG00000005134)	rasgrp3 (ENSAMXG00000005182)	LTBP1 (ENSAMXG00000005223)	ttc27 (ENSAMXG00000043521)	ENSAMXG00000039268	ENSAMXG00000031715	slc18a2 (ENSAMXG00000016331)	PDZD8 (ENSAMXG00000016313)	pex13 (ENSAMXG00000010724) #21	SANBR (ENSAMXG00000001065) #22	ENSAMXG00000029882	ENSAMXG00000012704 #26	ENSAMXG00000033040	ENSAMXG00000006805	pgrmc2 (ENSAMXG00000034920)	asmt2 (ENSAMXG00000017811)	ENSAMXG00000030556	jade1 (ENSAMXG00000017786)	si:dkey-221l4.10 (ENSAMXG00000028340)	BIRC6 (ENSAMXG00000010869)	yipf4 (ENSAMXG00000010903)	exo1 (ENSAMXG00000010918)	ENSAMXG00000010932	ENSAMXG00000010935	HTR7 (ENSAMXG00000040600)
Electric eel	MODERN SPECIES	291														PDZD8 (ENSEEEG00000004979)	pex13 (ENSEEEG00000004983) #21	SANBR (ENSEEEG00000005004) #22	XPO1 (ENSEEEG00000005037) #26	b3gnt2b (ENSEEEG00000005098)	EHBP1 (ENSEEEG00000005099)	ENSEEEG00000005100	otx1 (ENSEEEG00000005101)	ENSEEEG00000005103	MDH1 (ENSEEEG00000005124)	ugp2b (ENSEEEG00000005505)	peli1b (ENSEEEG00000005670)	ENSEEEG00000005673	ENSEEEG00000005675	ENSEEEG00000005676	pygb (ENSEEEG00000005688)	ENSEEEG00000005749	entpd6 (ENSEEEG00000005751)
Cyprinoidei	ANCESTRAL SPECIES	76	ENSGT01010000222287.B.a.a.a.a.a.a	ENSGT00940000165449	ENSGT00940000157373.l	ENSGT00940000156169.a.b	ENSGT00950000182946.lb.b	ENSGT00950000183126.b.b	ENSGT00940000163053.c.a	ENSGT00940000154335.b.e	ENSGT00390000009613.a	ENSGT00390000018409.h	ENSGT00940000158306	ENSGT00700000104522	ENSGT00940000157593	ENSGT00390000017746	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.t.d.a #26	ENSGT00940000157824.i.b	ENSGT00940000155345.q	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a.r	ENSGT00940000153464.B.z.b	ENSGT00950000183050.b.b.b.a.a.a.a	ENSGT00940000166587	ENSGT00940000174754	ENSGT00940000154186.a.q	ENSGT00950000183034.B	ENSGT00940000154531	ENSGT00390000002053
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	313	ENSGT00940000155896.k.h	ENSGT00940000153956.a.b.b	ENSGT00940000155989.e.d	ENSGT01010000222287.B.a.a.a.a.a.a.a	ENSGT00940000165449	ENSGT00940000157373.l.g	ENSGT00950000183126.b.b.a	ENSGT00940000163053.c.a	ENSGT00390000009613.a.v.b	ENSGT00390000018409.h.c	ENSGT00940000158306.v.b	ENSGT00940000165789	ENSGT00940000157593.b	ENSGT00390000017746.h	ENSGT00390000016883.l #21	ENSGT00390000008178.k #22	ENSGT00940000153408.B.t.d.a.a #26	ENSGT00940000155345.q.d	ENSGT00940000157597.e.b	ENSGT00940000161234.b	ENSGT00390000016551.i
Cyprininae_a	ANCESTRAL SPECIES	304	ENSGT00940000155896.k.h	ENSGT00940000153956.a.b.b	ENSGT00940000155989.e.d	ENSGT01010000222287.B.a.a.a.a.a.a.a	ENSGT00940000165449	ENSGT00940000157373.l.g	ENSGT00950000183126.b.b.a	ENSGT00940000154335.b.e.b	ENSGT00390000009613.a.v.b	ENSGT00390000018409.h.c	ENSGT00940000158306.v.b	ENSGT00940000165789	ENSGT00940000157593.b	ENSGT00390000017746.h	ENSGT00390000016883.l #21	ENSGT00390000008178.k #22	ENSGT00940000153408.B.t.d.a.a #26	ENSGT00940000155345.q.d	ENSGT00940000157597.e.a.a.a	ENSGT00940000161234.b	ENSGT00390000016551.i
Common carp reference	MODERN SPECIES	4	pcgf5a (ENSCCRG00000024551)	ENSCCRG00000024565	ENSCCRG00000077844	ENSCCRG00000082306	zgc:65997 (ENSCCRG00000070786)	pank1a (ENSCCRG00000027871)	ENSCCRG00000055135	ptena (ENSCCRG00000077527)	papss2a (ENSCCRG00000027413)	minpp1a (ENSCCRG00000027401)	sgms1a (ENSCCRG00000027300)	ENSCCRG00000080142	slc18a2 (ENSCCRG00000027262)	ENSCCRG00000027247	pex13 (ENSCCRG00000003017) #21	ENSCCRG00000002941 #22	ENSCCRG00000003107 #26	ENSCCRG00000073128	b3gnt2b (ENSCCRG00000082775)	ENSCCRG00000061352	EHBP1 (ENSCCRG00000072862)	ENSCCRG00000073238	otx1 (ENSCCRG00000063935)	mdh1ab (ENSCCRG00000056932)	ugp2b (ENSCCRG00000024567)	peli1b (ENSCCRG00000024542)	ENSCCRG00000013690	ENSCCRG00000013697	ENSCCRG00000058947	zmpste24 (ENSCCRG00000065255)	ENSCCRG00000034282
Golden-line barbel	MODERN SPECIES	17	ppp1r3ca (ENSSGRG00000001019)	pcgf5a (ENSSGRG00000001021)	ANKRD1 (ENSSGRG00000001024)	ENSSGRG00000001033	zgc:65997 (ENSSGRG00000001035)	zgc:65997 (ENSSGRG00000001038)	pank1a (ENSSGRG00000001051)	ENSSGRG00000001058	ptena (ENSSGRG00000001060)	papss2a (ENSSGRG00000001415)	minpp1a (ENSSGRG00000004678)	sgms1a (ENSSGRG00000004680)	ENSSGRG00000004682	slc18a2 (ENSSGRG00000004688)	PDZD8 (ENSSGRG00000004690)	SANBR (ENSSGRG00000004691) #22	XPO1 (ENSSGRG00000004767) #26	b3gnt2b (ENSSGRG00000006584)	EHBP1 (ENSSGRG00000006607)	otx1 (ENSSGRG00000007339)	ENSSGRG00000007348
Cyprininae	ANCESTRAL SPECIES	40	ENSGT00940000155989.e.c	ENSGT01010000222287.B.a.a.a.a.a.a.b	ENSGT00940000157373.l.h	ENSGT00940000156169.a.b	ENSGT00950000182946.lb.b.f.a	ENSGT00950000182946.lb.b.f.b	ENSGT00950000183126.b.b.b	ENSGT00940000154335.b.e.a	ENSGT00390000009613.a.v.a	ENSGT00390000018409.h.d	ENSGT00940000158306.v.a	ENSGT00700000104522	ENSGT00940000157593.a	ENSGT00390000017746.g	ENSGT00390000016883.k #21	ENSGT00390000008178.l #22	ENSGT00940000153408.B.t.d.a.b #26	ENSGT00940000157824.i.b	ENSGT00940000155345.q.c	ENSGT00940000157597.e.a.b	ENSGT00940000161234.a	ENSGT00390000016551.j.b	ENSGT00390000016551.j.a	ENSGT00530000063410.a.r.c.a	ENSGT00940000153464.B.z.b.h	ENSGT00950000183050.b.b.b.a.a.a.a.b	ENSGT00940000166587.d	ENSGT00940000154186.a.q.e	ENSGT00950000183034.B.m	ENSGT00390000002053.c	ENSGT00940000165091.d.c.b
Cyprininae_a	ANCESTRAL SPECIES	35	ENSGT00940000155989.e.c	ENSGT01010000222287.B.a.a.a.a.a.a.b	ENSGT00940000157373.l.h	ENSGT00940000156169.a.b	ENSGT00950000182946.lb.b.f.a	ENSGT00950000182946.lb.b.f.b	ENSGT00950000183126.b.b.b	ENSGT00940000154335.b.e.a	ENSGT00390000009613.a.v.a	ENSGT00390000018409.h.d	ENSGT00940000158306.v.a	ENSGT00700000104522	ENSGT00940000157593.a	ENSGT00390000017746.g	ENSGT00390000016883.k #21	ENSGT00390000008178.l #22	ENSGT00940000153408.B.t.d.a.b #26	ENSGT00940000157824.i.b	ENSGT00940000155345.q.c	ENSGT00940000157597.e.a.b	ENSGT00940000161234.a	ENSGT00390000016551.j.b	ENSGT00390000016551.j.a	ENSGT00530000063410.a.r.c.b	ENSGT00940000153464.B.z.b.g	ENSGT00950000183050.b.b.b.a.a.a.a.a	ENSGT00940000166587.c	ENSGT00940000154186.a.q.f	ENSGT00950000183034.B.n	ENSGT00390000002053.d	ENSGT00940000165091.d.c.a
Golden-line barbel	MODERN SPECIES	53	ENSSGRG00000003460	ENSSGRG00000003475	ENSSGRG00000003479	ENSSGRG00000003482	pank1a (ENSSGRG00000003496)	SLC16A12 (ENSSGRG00000003605)	ENSSGRG00000003634	ptena (ENSSGRG00000003648)	papss2a (ENSSGRG00000004155)	minpp1a (ENSSGRG00000008060)	sgms1a (ENSSGRG00000008062)	kcnk18 (ENSSGRG00000008063)	slc18a2 (ENSSGRG00000008065)	PDZD8 (ENSSGRG00000008067)	pex13 (ENSSGRG00000008068) #21	SANBR (ENSSGRG00000008070) #22	XPO1 (ENSSGRG00000008167) #26	ENSSGRG00000009075	b3gnt2b (ENSSGRG00000009076)	EHBP1 (ENSSGRG00000009079)	otx1 (ENSSGRG00000009093)	ENSSGRG00000009096	mdh1ab (ENSSGRG00000009100)	ugp2b (ENSSGRG00000009223)	peli1b (ENSSGRG00000009965)	ENSSGRG00000009966	ENSSGRG00000009968	RLF (ENSSGRG00000009969)	DYNLT1 (ENSSGRG00000010041)	atp5if1b (ENSSGRG00000010042)	rpl13a (ENSSGRG00000010044)
Common carp reference	MODERN SPECIES	30	pcgf5a (ENSCCRG00000063244)	ENSCCRG00000024493	ENSCCRG00000054383	ENSCCRG00000055882	pank1a (ENSCCRG00000072473)	ENSCCRG00000040972	SLC16A12 (ENSCCRG00000052901)	ENSCCRG00000040975	ENSCCRG00000040984	ptena (ENSCCRG00000040992)	papss2a (ENSCCRG00000055982)	sgms1a (ENSCCRG00000070887)	kcnk18 (ENSCCRG00000013054)	slc18a2 (ENSCCRG00000013071)	PDZD8 (ENSCCRG00000013188)	ENSCCRG00000057670 #22	ENSCCRG00000055884 #26	ENSCCRG00000003451	ENSCCRG00000003438	b3gnt2b (ENSCCRG00000053079)	EHBP1 (ENSCCRG00000022494)	otx1 (ENSCCRG00000067814)	WDPCP (ENSCCRG00000024549)	mdh1ab (ENSCCRG00000026888)	ugp2b (ENSCCRG00000018829)	peli1b (ENSCCRG00000018790)	ENSCCRG00000018709	ENSCCRG00000049285	ENSCCRG00000058941	zmpste24 (ENSCCRG00000057683)	atp5if1b (ENSCCRG00000049269)
Goldfish	MODERN SPECIES	8	sptlc2a (ENSCARG00000057888)	alkbh1 (ENSCARG00000057822)	slirp (ENSCARG00000057812)	adck1 (ENSCARG00000057776)	nrxn3a (ENSCARG00000056966)	ston2 (ENSCARG00000056889)	foxn3 (ENSCARG00000056869)	ENSCARG00000056844	ENSCARG00000056814	dio2 (ENSCARG00000056787)	ENSCARG00000056777	kcnk18 (ENSCARG00000056765)	slc18a2 (ENSCARG00000056744)	PDZD8 (ENSCARG00000056678)	pex13 (ENSCARG00000056657) #21	SANBR (ENSCARG00000056640) #22	XPO1 (ENSCARG00000056366) #26	ENSCARG00000056285	b3gnt2b (ENSCARG00000056269)	EHBP1 (ENSCARG00000056251)	lpin1a (ENSCARG00000056121)	pfn4 (ENSCARG00000056064)	itsn2b (ENSCARG00000051607)	ENSCARG00000051172	commd9 (ENSCARG00000051147)	rpl13a (ENSCARG00000051111)	atp5if1b (ENSCARG00000051081)	ENSCARG00000051074	zmpste24 (ENSCARG00000050800)	DYNLT1 (ENSCARG00000050782)	ENSCARG00000050744
Zebrafish	MODERN SPECIES	8	zgc:65997 (ENSDARG00000043562)	pank1a (ENSDARG00000008192)	SLC16A12 (ENSDARG00000017773)	ENSDARG00000056976	ifit15 (ENSDARG00000043584)	ifit14 (ENSDARG00000071012)	ENSDARG00000043586	ptena (ENSDARG00000071018)	papss2a (ENSDARG00000071021)	minpp1a (ENSDARG00000057058)	sgms1a (ENSDARG00000057053)	kcnk18 (ENSDARG00000057049)	slc18a2 (ENSDARG00000015110)	PDZD8 (ENSDARG00000088699)	pex13 (ENSDARG00000071037) #21	SANBR (ENSDARG00000079857) #22	XPO1 (ENSDARG00000063229) #26	ENSDARG00000097418	ENSDARG00000086305	b3gnt2b (ENSDARG00000091902)	EHBP1 (ENSDARG00000043643)	otx1 (ENSDARG00000094992)	WDPCP (ENSDARG00000074590)	mdh1ab (ENSDARG00000103849)	ugp2b (ENSDARG00000008200)	peli1b (ENSDARG00000044083)	ENSDARG00000071341	ENSDARG00000071347	ENSDARG00000116881	ENSDARG00000063553	DYNLT1 (ENSDARG00000094627)
Euteleosteomorpha	ANCESTRAL SPECIES	207													ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000157824.i.b	ENSGT00940000155345.q	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a.q.a	ENSGT00940000153464.B.z.b	ENSGT00950000183050.b.b.b.a.a.a.a	ENSGT00940000166587	ENSGT00940000155337.ab	ENSGT00940000177700	ENSGT00940000154186.a.q	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a
Protacanthopterygii	ANCESTRAL SPECIES	4	ENSGT00390000007551	ENSGT00940000154445.a	ENSGT00390000004284.e	ENSGT00940000156530.c.ab	ENSGT00390000018052	ENSGT00950000183091.A.b	ENSGT00390000015405	ENSGT00390000009597.c	ENSGT00940000157509.a.f	ENSGT00940000156327.l.o	ENSGT00940000156841.a.a	ENSGT00940000154556.a.b	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a.b #26	ENSGT00940000157824.i.b	ENSGT00940000155345.q	ENSGT00940000157597	ENSGT00940000161234.c	ENSGT00390000016551	ENSGT00530000063410.a.q.a	ENSGT00940000153464.B.z.b	ENSGT01100000263516.a.b.b.b.b.a.a.b.b.a.a.b	ENSGT00950000183050.b.b.b.a.a.a.a	ENSGT00940000166587	ENSGT00940000155337.ab	ENSGT00940000177700	ENSGT01050000244843.d.f.b	ENSGT00940000157081
Salmoninae	ANCESTRAL SPECIES	617							ENSGT00390000009597.c	ENSGT00940000157509.a.f	ENSGT00940000156327.l.o.b	ENSGT00940000156841.a.a	ENSGT00940000154556.a.b	ENSGT00940000156467 #18	ENSGT00940000163917.a.b.c.b	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.t #26	ENSGT00940000157824.i.b	ENSGT00940000155345.q	ENSGT00940000153408.B.s.a.b #26	ENSGT00970000194185.C
Huchen	DUPLICATION
Huchen	MODERN SPECIES	3965												rel (ENSHHUG00000049274) #19	pex13 (ENSHHUG00000049268) #21	ENSHHUG00000049267	ENSHHUG00000049257 #22	ENSHHUG00000049250 #22	XPO1 (ENSHHUG00000049217) #26	ENSHHUG00000049215	ENSHHUG00000049212
Huchen	MODERN SPECIES	3965													rel (ENSHHUG00000049274) #19	pex13 (ENSHHUG00000049268) #21	ENSHHUG00000049267	ENSHHUG00000049257 #22	ENSHHUG00000049250 #22	XPO1 (ENSHHUG00000049217) #26	ENSHHUG00000049215	ENSHHUG00000049212
Salmoninae_a	ANCESTRAL SPECIES	100	ENSGT00940000160250	ENSGT00940000157412.a.b.d	ENSGT00940000161045.a	ENSGT01050000244940.a.b	ENSGT00390000009597.c	ENSGT00940000157509.a.f	ENSGT00940000156327.l.o.b	ENSGT00940000156841.a.a	ENSGT00940000154556.b	ENSGT00940000154556.a.b.a	ENSGT00940000156467 #18	ENSGT00940000163917.a.b.c.b	ENSGT00390000000113.A.a.b	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.t #26	ENSGT00940000157824.i.b	ENSGT00940000155345.q
Oncorhynchus	ANCESTRAL SPECIES	126					ENSGT00940000158732.m #19	ENSGT00390000009597.c	ENSGT00940000157509.a.f	ENSGT00940000156327.l.o.b	ENSGT00940000156841.a.a	ENSGT00940000154556.b.a	ENSGT00940000156467 #18	ENSGT00940000163917.a.b.c.b	ENSGT00390000000113.A.a.b	ENSGT00940000158732.n #19	ENSGT00390000016883.c #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a.b #26	ENSGT00970000194185.C	ENSGT00940000165604	ENSGT00940000157824.i.b	ENSGT00940000155345.q
Oncorhynchus_a	ANCESTRAL SPECIES	269														ENSGT00940000158732.m #19	ENSGT00390000016883.c #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a.b #26	ENSGT00970000194185.C	ENSGT00940000165604	ENSGT00940000157824.i.b	ENSGT00940000155345.q
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	33	ENSOKIG00005043987	ENSOKIG00005043974	ENSOKIG00005043966	ENSOKIG00005043939	ENSOKIG00005043930	ENSOKIG00005043925	GHITM (ENSOKIG00005043909)	CHST3 (ENSOKIG00005043901)	SPRED2 (ENSOKIG00005043896)	ENSOKIG00005043475	papolg (ENSOKIG00005039901) #18	ENSOKIG00005039783	ENSOKIG00005039740	REL (ENSOKIG00005039724) #19	pex13 (ENSOKIG00005039709) #21	SANBR (ENSOKIG00005039657) #22	ENSOKIG00005039218 #26	ENSOKIG00005039174	ENSOKIG00005039168	ENSOKIG00005039155	b3gnt2b (ENSOKIG00005039138)	ENSOKIG00005046392	otx1 (ENSOKIG00005046385)	ENSOKIG00005046266	MDH1 (ENSOKIG00005045989)	UGP2 (ENSOKIG00005045840)	ENSOKIG00005045806	ENSOKIG00005045728	ENSOKIG00005045719	ENSOKIG00005045645	ENSOKIG00005045554
Coho salmon	MODERN SPECIES	749																SANBR (ENSOKIG00005044583) #22	ENSOKIG00005044620 #26
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	15	dock1 (ENSOMYG00000065093)	foxi1 (ENSOMYG00000024914)	CLRN3 (ENSOMYG00000076734)	PTPRE (ENSOMYG00000035941)	ENSOMYG00000075550	ENSOMYG00000048837	ENSOMYG00000069772	ebf3a (ENSOMYG00000050048)	ENSOMYG00000077783	ENSOMYG00000076967	ENSOMYG00000053535	ENSOMYG00000063787 #18	ENSOMYG00000072111	REL (ENSOMYG00000044569) #19	ENSOMYG00000031437	ENSOMYG00000062826 #22	ENSOMYG00000057812 #26	ENSOMYG00000050818	ENSOMYG00000055109	ENSOMYG00000062049	ENSOMYG00000056805	ENSOMYG00000065124	ENSOMYG00000066187	ENSOMYG00000056812	ENSOMYG00000059380	ENSOMYG00000048975	ENSOMYG00000046661	ENSOMYG00000029392	ENSOMYG00000077291	ENSOMYG00000056216	ENSOMYG00000037293
Rainbow trout	MODERN SPECIES		ENSOMYG00000000370	ENSOMYG00000044517	ENSOMYG00000060095	ENSOMYG00000035563	ghitm (ENSOMYG00000035557)	ENSOMYG00000041655	ENSOMYG00000070624	ENSOMYG00000048884	ENSOMYG00000077490	ENSOMYG00000075413	ENSOMYG00000000126 #18	ENSOMYG00000069566	ENSOMYG00000044586	REL (ENSOMYG00000074570) #19	pex13 (ENSOMYG00000000604) #21	SANBR (ENSOMYG00000067508) #22	XPO1 (ENSOMYG00000062205) #26	ENSOMYG00000048298	ENSOMYG00000052214	ENSOMYG00000000177	ENSOMYG00000000233	ENSOMYG00000000191	b3gnt2b (ENSOMYG00000053328)	ENSOMYG00000071947	ENSOMYG00000059374	ENSOMYG00000070464	ENSOMYG00000068195	ENSOMYG00000051099	ENSOMYG00000070137	ENSOMYG00000039580	ENSOMYG00000068065
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	231										ENSGT00940000154556.a.b.a	ENSGT00940000156467 #18	ENSGT00940000163917.a.b.c.b	ENSGT00390000000113.A.a.b	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178.s #22	ENSGT00940000155345.q	ENSGT00390000008178.t #22	ENSGT00940000153408.B.s.a.b #26	ENSGT00970000194185.C
River trout	MODERN SPECIES	9	ENSSTUG00000014648	ndufb8 (ENSSTUG00000014651)	gpx9 (ENSSTUG00000014667)	ENSSTUG00000014677	fbxl15 (ENSSTUG00000014692)	ENSSTUG00000014710	ENSSTUG00000014712	ENSSTUG00000014728	ENSSTUG00000014744	SPRED2 (ENSSTUG00000014753)	ENSSTUG00000014761	papolg (ENSSTUG00000014941) #18	ENSSTUG00000018261	rel (ENSSTUG00000018274) #19	pex13 (ENSSTUG00000018324) #21	SANBR (ENSSTUG00000018341) #22	XPO1 (ENSSTUG00000018409) #26	ENSSTUG00000018565	ENSSTUG00000018570	ENSSTUG00000018582	MDH1 (ENSSTUG00000018603)	ugp2b (ENSSTUG00000018863)	ENSSTUG00000019490	ENSSTUG00000019497	peli1b (ENSSTUG00000019507)	ENSSTUG00000019570	ENSSTUG00000019682	lgalslb (ENSSTUG00000019685)	ENSSTUG00000019694	ENSSTUG00000019701	ENSSTUG00000019718
Atlantic salmon	MODERN SPECIES	1098								ENSSSAG00000111590	ENSSSAG00000015638	ENSSSAG00000094331	ENSSSAG00000072049	ENSSSAG00000072128 #18	ENSSSAG00000119631	ENSSSAG00000072037	REL (ENSSSAG00000102030) #19	SANBR (ENSSSAG00000117472) #22	ENSSSAG00000057312 #26	ENSSSAG00000020249 #26	ENSSSAG00000099028	ENSSSAG00000044004	ENSSSAG00000086437	ENSSSAG00000117895	ENSSSAG00000049572
Salmo	ANCESTRAL SPECIES	231								ENSGT00940000154556.a.b.a	ENSGT00940000156467 #18	ENSGT00940000163917.a.b.c.b	ENSGT00390000000113.A.a.b	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178.s #22	ENSGT00940000155345.q	ENSGT00390000008178.t #22	ENSGT00940000153408.B.s.a.b #26	ENSGT00970000194185.C
River trout	MODERN SPECIES	35			chst3b (ENSSTUG00000016742)	GHITM (ENSSTUG00000016760)	ENSSTUG00000016803	ENSSTUG00000016819	ENSSTUG00000016828	ENSSTUG00000016831	ENSSTUG00000016839	SPRED2 (ENSSTUG00000016846)	ENSSTUG00000016864	papolg (ENSSTUG00000017319) #18	ENSSTUG00000021761	ENSSTUG00000021771	pex13 (ENSSTUG00000021880) #21	SANBR (ENSSTUG00000021904) #22	XPO1 (ENSSTUG00000022024) #26	ENSSTUG00000022278	ENSSTUG00000022286	b3gnt2b (ENSSTUG00000022297)	otx1 (ENSSTUG00000022321)	otx1 (ENSSTUG00000022333)	ENSSTUG00000017983	ENSSTUG00000017988	MDH1 (ENSSTUG00000018007)	ugp2b (ENSSTUG00000018287)	ENSSTUG00000019710	peli1b (ENSSTUG00000019729)	ENSSTUG00000019856	lgalslb (ENSSTUG00000020161)	ENSSTUG00000020168
Northern pike	MODERN SPECIES	4	cnrip1b (ENSELUG00000015120)	dnaaf10 (ENSELUG00000015074)	pno1 (ENSELUG00000014887)	C1D (ENSELUG00000014823)	ENSELUG00000014800	ENSELUG00000014766	ENSELUG00000014739	ENSELUG00000031773	SPRED2 (ENSELUG00000014634)	ACTR2 (ENSELUG00000014576)	papolg (ENSELUG00000014497) #18	ENSELUG00000014470	ENSELUG00000001419	rel (ENSELUG00000014377) #19	pex13 (ENSELUG00000014334) #21	SANBR (ENSELUG00000014318) #22	XPO1 (ENSELUG00000014306) #26	b3gnt2b (ENSELUG00000014198)	EHBP1 (ENSELUG00000014117)	WDPCP (ENSELUG00000013884)	otx1 (ENSELUG00000013906)	ENSELUG00000030195	MDH1 (ENSELUG00000013840)	ENSELUG00000032007	ugp2b (ENSELUG00000013792)	ENSELUG00000029570	ENSELUG00000013758	peli1b (ENSELUG00000013744)	ENSELUG00000013717	lgalslb (ENSELUG00000013610)	ENSELUG00000034614
Acanthomorphata	ANCESTRAL SPECIES	45	ENSGT00940000167263	ENSGT00950000182980.a.b.b.b	ENSGT00730000110943.B.c	ENSGT00940000167711.a.b	ENSGT00940000167711.a.a	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00390000013008	ENSGT00390000010899.a.b.b.a	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166683.b	ENSGT00940000154866.B.a	ENSGT01030000234532.A.a.a.b.j.a	ENSGT00940000160412.b	ENSGT00940000170402	ENSGT00940000157361.b #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.b ##16	ENSGT00940000155134.y	ENSGT00950000183045.A.a.a	ENSGT00390000018730.B	ENSGT00940000159583	ENSGT00940000155884.a.c
Euacanthomorphacea	ANCESTRAL SPECIES	32	ENSGT00950000182980.a.b.b.b	ENSGT00730000110943.B.c	ENSGT00940000167711.a.b	ENSGT00940000167711.a.a	ENSGT00940000164218	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000155076.b.b	ENSGT00390000013008	ENSGT00390000010899.a.b.b.a	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166683.b	ENSGT00940000154866.B.a	ENSGT01030000234532.A.a.a.b.j.a	ENSGT00940000170402	ENSGT00940000157361.b #13	ENSGT00940000164978.b.c	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.b ##16	ENSGT00940000155134.y	ENSGT00950000183045.A.a.a	ENSGT00390000018730.B	ENSGT00940000159583	ENSGT00940000155884.a.c
Percomorphaceae	ANCESTRAL SPECIES	30	ENSGT00940000154141.B	ENSGT00940000158638	ENSGT00940000167263	ENSGT00950000182980.a.b.b.b	ENSGT00730000110943.B.c	ENSGT00940000167711.a.b	ENSGT00940000164218	ENSGT00940000167711.a.a	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00530000063867.b	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y	ENSGT00940000156983.a.b ##16	ENSGT00390000005537 #15	ENSGT00940000158042 #14	ENSGT00940000164978.b.c
Tiger tail seahorse	MODERN SPECIES	312	TTC7A (ENSHCOG00000006324)	ENSHCOG00000006353	calm2a (ENSHCOG00000006363)	ENSHCOG00000006387	ENSHCOG00000006399	ENSHCOG00000006422	epcam (ENSHCOG00000006436)	epcam (ENSHCOG00000006442)	PLEKHH2 (ENSHCOG00000006515)	ENSHCOG00000006725	zfp36l2 (ENSHCOG00000006757)	lhb (ENSHCOG00000006769)	papolg (ENSHCOG00000006782) #18	REL (ENSHCOG00000006855) #19	pex13 (ENSHCOG00000006878) #21	SANBR (ENSHCOG00000006910) #22	XPO1 (ENSHCOG00000006949) #26	ENSHCOG00000006964 #26	pcgf6 (ENSHCOG00000007039)	inaa (ENSHCOG00000007065)	sertad2b (ENSHCOG00000007074)	slc1a4 (ENSHCOG00000007093)	smap1 (ENSHCOG00000007112)	b3gat2 (ENSHCOG00000007129)	OGFRL1 (ENSHCOG00000007156)	asrgl1 (ENSHCOG00000007178)	RIMS1 (ENSHCOG00000007388)	ENSHCOG00000007423 ##16	fancl (ENSHCOG00000007556) #15	ENSHCOG00000007576 #14	CCDC85A (ENSHCOG00000007631) #13
Percomorphaceae_B	ANCESTRAL SPECIES	24	ENSGT00950000182980.a.b.b.b	ENSGT00730000110943.B.c	ENSGT00940000164251	ENSGT00940000167711.a.b	ENSGT00940000167711.a.a	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00530000063867.b	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y	ENSGT00940000156983.a.b ##16	ENSGT00910000147025 #17	ENSGT00390000005537 #15	ENSGT00940000158042 #14
Ovalentaria	ANCESTRAL SPECIES	18	ENSGT00950000182980.a.b.b.b	ENSGT00730000110943.B.c	ENSGT00940000164251	ENSGT00940000167711.a.b	ENSGT00940000167711.a.a	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00530000063867.b	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y	ENSGT00940000156983.a.b ##16	ENSGT00910000147025 #17	ENSGT00390000005537 #15	ENSGT00940000158042 #14
Ovalentaria_B	ANCESTRAL SPECIES	25	ENSGT00950000182980.a.b.b.b	ENSGT00730000110943.B.c	ENSGT00940000164251	ENSGT00940000167711.a.b	ENSGT00940000167711.a.a	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00530000063867.b	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y	ENSGT00940000156983.a.b ##16	ENSGT00910000147025 #17	ENSGT00390000005537 #15	ENSGT00940000158042 #14
Pomacentridae	ANCESTRAL SPECIES	36	ENSGT00730000110943.B.c	ENSGT00940000164251	ENSGT00940000167711.a.b	ENSGT00940000167711.a.a	ENSGT00940000164218	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00530000063867.b	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y	ENSGT00940000156983.a.b ##16	ENSGT00390000005537 #15	ENSGT00940000158042 #14	ENSGT00940000164978.b.c
Pomacentridae_A	ANCESTRAL SPECIES	41	ENSGT00730000110943.B.c	ENSGT00940000164251	ENSGT00940000167711.a.b	ENSGT00940000167711.a.a	ENSGT00940000164218	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00530000063867.b	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y	ENSGT00940000156983.a.b ##16	ENSGT00390000005537 #15	ENSGT00940000158042 #14	ENSGT00940000164978.b.c
Amphiprion	ANCESTRAL SPECIES	47	ENSGT00950000182980.a.b.b.b	ENSGT00730000110943.B.c	ENSGT00940000167711.a.b	ENSGT00940000167711.a.a	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000180563	ENSGT00940000161584	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00530000063867.b	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y	ENSGT00940000156983.a.b ##16	ENSGT00390000005537 #15	ENSGT00940000158042 #14	ENSGT00940000164978.b.c
Orange clownfish	MODERN SPECIES	12	ENSAPEG00000006493	ENSAPEG00000006548	ENSAPEG00000006565	ENSAPEG00000006578	epcam (ENSAPEG00000006604)	PLEKHH2 (ENSAPEG00000006640)	ENSAPEG00000006745	ENSAPEG00000006867	zfp36l2 (ENSAPEG00000006879)	ENSAPEG00000006897	ENSAPEG00000006917	haao (ENSAPEG00000006928)	papolg (ENSAPEG00000006944) #18	REL (ENSAPEG00000006957) #19	pex13 (ENSAPEG00000006970) #21	SANBR (ENSAPEG00000006991) #22	XPO1 (ENSAPEG00000007038) #26	ENSAPEG00000007162	pcgf6 (ENSAPEG00000007241)	INA (ENSAPEG00000007255)	sertad2b (ENSAPEG00000007263)	slc1a4 (ENSAPEG00000007270)	smap1 (ENSAPEG00000007307)	b3gat2 (ENSAPEG00000007371)	OGFRL1 (ENSAPEG00000007402)	asrgl1 (ENSAPEG00000007447)	RIMS1 (ENSAPEG00000007462)	ENSAPEG00000007547	ENSAPEG00000007654 ##16	fancl (ENSAPEG00000007736) #15	vrk2 (ENSAPEG00000007944) #14
Clown anemonefish	MODERN SPECIES	1436										ENSAOCG00000010297	ENSAOCG00000010275	haao (ENSAOCG00000002723)	papolg (ENSAOCG00000010254) #18	REL (ENSAOCG00000010230) #19	pex13 (ENSAOCG00000010214) #21	SANBR (ENSAOCG00000010190) #22	XPO1 (ENSAOCG00000010121) #26	ENSAOCG00000010045	pcgf6 (ENSAOCG00000010019)	INA (ENSAOCG00000010008)	sertad2b (ENSAOCG00000000609)	slc1a4 (ENSAOCG00000009981)	smap1 (ENSAOCG00000009935)	b3gat2 (ENSAOCG00000009906)
Spiny chromis	MODERN SPECIES	151						utp23 (ENSAPOG00000004608)	utp23 (ENSAPOG00000004620)	lrp12 (ENSAPOG00000004635)	zfp36l2 (ENSAPOG00000004647)	ENSAPOG00000004660	ENSAPOG00000000117	haao (ENSAPOG00000004722)	papolg (ENSAPOG00000004798) #18	REL (ENSAPOG00000004836) #19	pex13 (ENSAPOG00000004860) #21	SANBR (ENSAPOG00000004895) #22	XPO1 (ENSAPOG00000004984) #26	ENSAPOG00000005039	pcgf6 (ENSAPOG00000005073)	INA (ENSAPOG00000005100)	sertad2b (ENSAPOG00000005117)	slc1a4 (ENSAPOG00000005172)
Bicolor damselfish	MODERN SPECIES	311		si:ch211-93n23.7 (ENSSPAG00000009344)	calm2a (ENSSPAG00000009320)	ENSSPAG00000009292	ENSSPAG00000009262	epcam (ENSSPAG00000009236)	PLEKHH2 (ENSSPAG00000009167)	ENSSPAG00000009108	zfp36l2 (ENSSPAG00000009096)	ENSSPAG00000009080	ENSSPAG00000009075	haao (ENSSPAG00000009062)	papolg (ENSSPAG00000009004) #18	REL (ENSSPAG00000008979) #19	pex13 (ENSSPAG00000008962) #21	SANBR (ENSSPAG00000008889) #22	XPO1 (ENSSPAG00000008738) #26	ENSSPAG00000008688	pcgf6 (ENSSPAG00000008671)	INA (ENSSPAG00000008580)	sertad2b (ENSSPAG00000008557)	slc1a4 (ENSSPAG00000008528)	ENSSPAG00000008515
Cichlidae	ANCESTRAL SPECIES	13	ENSGT00940000167263	ENSGT00950000182980.a.b.b.b	ENSGT00730000110943.B.c	ENSGT00940000167711.a.b	ENSGT00940000167711.a.a	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00530000063867.b	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y	ENSGT00940000156983.a.b ##16	ENSGT00910000147025 #17	ENSGT00390000005537 #15	ENSGT00940000158042 #14
Pseudocrenilabrinae	ANCESTRAL SPECIES	16	ENSGT00940000167263	ENSGT00950000182980.a.b.b.b	ENSGT00730000110943.B.c	ENSGT00940000167711.a.b	ENSGT00940000167711.a.a	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00530000063867.b	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y	ENSGT00940000156983.a.b ##16	ENSGT00390000005537 #15	ENSGT00940000158042 #14	ENSGT00940000164978.b.c
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	11	ENSGT00940000167263	ENSGT00950000182980.a.b.b.b	ENSGT00730000110943.B.c	ENSGT00940000167711.a.b	ENSGT00940000167711.a.a	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00530000063867.b	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y	ENSGT00940000156983.a.b ##16	ENSGT00390000005537 #15	ENSGT00940000158042 #14	ENSGT00940000164978.b.c
Haplochromini	ANCESTRAL SPECIES	10	ENSGT00940000167263	ENSGT00950000182980.a.b.b.b	ENSGT00730000110943.B.c	ENSGT00940000167711.a.b	ENSGT00940000167711.a.a	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883.h #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00530000063867.b	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y	ENSGT00940000156983.a.b ##16	ENSGT00390000005537 #15	ENSGT00940000158042 #14	ENSGT00940000164978.b.c
Haplochromini_A	ANCESTRAL SPECIES	8	ENSGT00940000167263	ENSGT00950000182980.a.b.b.b	ENSGT00730000110943.B.c	ENSGT00940000167711.a.b	ENSGT00940000167711.a.a	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883.h #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00530000063867.b	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y	ENSGT00940000156983.a.b ##16	ENSGT00390000005537 #15	ENSGT00940000158042 #14	ENSGT00940000164978.b.c
Haplochromini_B	ANCESTRAL SPECIES	59	ENSGT00940000167263	ENSGT00950000182980.a.b.b.b	ENSGT00730000110943.B.c	ENSGT00940000167711.a.b	ENSGT00940000167711.a.a	ENSGT00390000018245.m.a	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883.h #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00530000063867.b	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y	ENSGT00940000156983.a.b ##16	ENSGT00910000147025 #17	ENSGT00390000005537 #15	ENSGT00940000158042 #14
Zebra mbuna	MODERN SPECIES	1095	TTC7A (ENSMZEG00005018070)	si:ch211-93n23.7 (ENSMZEG00005018098)	calm2a (ENSMZEG00005018099)	ENSMZEG00005018104	epcam (ENSMZEG00005018107)	epcam (ENSMZEG00005018110)	PLEKHH2 (ENSMZEG00005018115)	ENSMZEG00005018122	zfp36l2 (ENSMZEG00005018129)	OXER1 (ENSMZEG00005018131)	ENSMZEG00005018133	haao (ENSMZEG00005018135)	papolg (ENSMZEG00005018140) #18	rel (ENSMZEG00005018144) #19	pex13 (ENSMZEG00005018148) #21	SANBR (ENSMZEG00005018150) #22	ENSMZEG00005018155	XPO1 (ENSMZEG00005018158) #26	ENSMZEG00005018165	pcgf6 (ENSMZEG00005018168)	inaa (ENSMZEG00005018170)	sertad2b (ENSMZEG00005018172)	slc1a4 (ENSMZEG00005018175)	smap1 (ENSMZEG00005018180)	b3gat2 (ENSMZEG00005018189)	OGFRL1 (ENSMZEG00005018195)	asrgl1 (ENSMZEG00005018203)	RIMS1 (ENSMZEG00005018210)	ENSMZEG00005018229 ##16	ENSMZEG00005018235 #17	ENSMZEG00005018240
Eastern happy	MODERN SPECIES	4	ENSACLG00000016464	epcam (ENSACLG00000016452)	ENSACLG00000016402	epcam (ENSACLG00000016376)	PLEKHH2 (ENSACLG00000016220)	ENSACLG00000015898	zfp36l2 (ENSACLG00000015842)	OXER1 (ENSACLG00000015728)	ENSACLG00000015716	ENSACLG00000015704	haao (ENSACLG00000015648)	papolg (ENSACLG00000015592) #18	rel (ENSACLG00000015545) #19	pex13 (ENSACLG00000015531) #21	ENSACLG00000015401	SANBR (ENSACLG00000015345) #22	XPO1 (ENSACLG00000015192) #26	ENSACLG00000015079	pcgf6 (ENSACLG00000015043)	inaa (ENSACLG00000015027)	sertad2b (ENSACLG00000015019)	slc1a4 (ENSACLG00000014962)	smap1 (ENSACLG00000014878)	b3gat2 (ENSACLG00000014794)	OGFRL1 (ENSACLG00000014776)	ENSACLG00000014736	asrgl1 (ENSACLG00000014731)	RIMS1 (ENSACLG00000014225)	ENSACLG00000014137 #17	ENSACLG00000014086 ##16	ENSACLG00000014048
P. nyererei	MODERN SPECIES	357	si:ch211-93n23.7 (ENSPNYG00000006257)	calm2a (ENSPNYG00000006272)	ENSPNYG00000006295	ENSPNYG00000006335	ENSPNYG00000006368	epcam (ENSPNYG00000006385)	PLEKHH2 (ENSPNYG00000006410)	ENSPNYG00000006552	ENSPNYG00000006628	ENSPNYG00000006643	ENSPNYG00000006661	haao (ENSPNYG00000006682)	papolg (ENSPNYG00000006729) #18	rel (ENSPNYG00000006794) #19	pex13 (ENSPNYG00000006810) #21	SANBR (ENSPNYG00000006825) #22	ENSPNYG00000006864	XPO1 (ENSPNYG00000006874) #26	ENSPNYG00000006899	pcgf6 (ENSPNYG00000006924)	inaa (ENSPNYG00000006939)	sertad2b (ENSPNYG00000007002)	slc1a4 (ENSPNYG00000007039)	ENSPNYG00000007204
Burton s mouthbrooder	MODERN SPECIES	966																ENSHBUG00000020067 #22	XPO1 (ENSHBUG00000020037) #26	ENSHBUG00000019919	pcgf6 (ENSHBUG00000019886)	inaa (ENSHBUG00000019881)	sertad2b (ENSHBUG00000019872)	slc1a4 (ENSHBUG00000019865)	ENSHBUG00000019859
Lyretail cichlid	MODERN SPECIES	500										ENSNBRG00000011905	ENSNBRG00000011916	haao (ENSNBRG00000011926)	papolg (ENSNBRG00000011943) #18	rel (ENSNBRG00000012053) #19	ENSNBRG00000012164	SANBR (ENSNBRG00000012188) #22	XPO1 (ENSNBRG00000012229) #26	ENSNBRG00000012289	pcgf6 (ENSNBRG00000012306)	INA (ENSNBRG00000012345)	sertad2b (ENSNBRG00000012362)	slc1a4 (ENSNBRG00000012369)	smap1 (ENSNBRG00000012380)	b3gat2 (ENSNBRG00000012409)	OGFRL1 (ENSNBRG00000012441)
Nile tilapia	MODERN SPECIES	4	ENSONIG00000042282	ENSONIG00000028673	ENSONIG00000037284	epcam (ENSONIG00000003020)	PLEKHH2 (ENSONIG00000003014)	ENSONIG00000002998	zfp36l2 (ENSONIG00000042955)	OXER1 (ENSONIG00000002995)	ENSONIG00000028207	haao (ENSONIG00000002993)	papolg (ENSONIG00000002985) #18	rel (ENSONIG00000002983) #19	pex13 (ENSONIG00000002982) #21	ENSONIG00000043103	ENSONIG00000027301	SANBR (ENSONIG00000002974) #22	XPO1 (ENSONIG00000002969) #26	ENSONIG00000034435	ENSONIG00000032208	ENSONIG00000029244	pcgf6 (ENSONIG00000038648)	inaa (ENSONIG00000002959)	ENSONIG00000036913	sertad2b (ENSONIG00000028300)	slc1a4 (ENSONIG00000002942)	smap1 (ENSONIG00000002934)	b3gat2 (ENSONIG00000002928)	OGFRL1 (ENSONIG00000028484)	asrgl1 (ENSONIG00000002924)	RIMS1 (ENSONIG00000002909)	ENSONIG00000042887
Midas cichlid	MODERN SPECIES	1143													papolg (ENSACIG00000010546) #18	REL (ENSACIG00000010598) #19	ENSACIG00000010727	SANBR (ENSACIG00000010782) #22	XPO1 (ENSACIG00000010818) #26	ENSACIG00000010866 #26	ENSACIG00000010916	pcgf6 (ENSACIG00000010931)	INA (ENSACIG00000010962)	sertad2b (ENSACIG00000011011)	slc1a4 (ENSACIG00000011034)	smap1 (ENSACIG00000011192)	b3gat2 (ENSACIG00000011215)	OGFRL1 (ENSACIG00000011233)	asrgl1 (ENSACIG00000011338)	RIMS1 (ENSACIG00000011360)	ENSACIG00000011416	ENSACIG00000011481 ##16	ENSACIG00000011509 #17
Atherinomorphae	ANCESTRAL SPECIES	16	ENSGT00940000158638	ENSGT00950000182980.a.b.b.b	ENSGT00730000110943.B.c	ENSGT00940000167711.a.b	ENSGT00940000167711.a.a	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00530000063867.b	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y	ENSGT00940000156983.a.b ##16	ENSGT00390000005537 #15	ENSGT00940000158042 #14	ENSGT00940000164978.b.c
Cyprinodontiformes	ANCESTRAL SPECIES	17	ENSGT00940000158638	ENSGT00950000182980.a.b.b.b	ENSGT00730000110943.B.c	ENSGT00940000167711.a.b	ENSGT00940000167711.a.a	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00530000063867.b	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y.q	ENSGT00940000156983.a.b ##16	ENSGT00390000005537 #15	ENSGT00940000158042 #14	ENSGT00940000164978.b.c
Aplocheiloidei	ANCESTRAL SPECIES	138	ENSGT00940000158638	ENSGT00950000182980.a.b.b.b	ENSGT00940000167711.a.b	ENSGT00940000167711.a.a	ENSGT00730000110943.B.c	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00940000168731	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000158034
Mangrove rivulus	MODERN SPECIES	391										ENSKMAG00000016512	haao (ENSKMAG00000016500)	papolg (ENSKMAG00000016439) #18	REL (ENSKMAG00000016389) #19	polr2k (ENSKMAG00000016379)	pex13 (ENSKMAG00000016368) #21	SANBR (ENSKMAG00000016337) #22	XPO1 (ENSKMAG00000016218) #26	fzd1 (ENSKMAG00000016171)
Turquoise killifish	MODERN SPECIES	1612	ENSNFUG00015000216	ENSNFUG00015000225	calm2a (ENSNFUG00015000255)	ENSNFUG00015000303	ENSNFUG00015000316	PLEKHH2 (ENSNFUG00015000328)	ENSNFUG00015000385	ENSNFUG00015000472	ZFP36L2 (ENSNFUG00015000478)	ENSNFUG00015000483	ENSNFUG00015000491	HAAO (ENSNFUG00015000503)	PAPOLG (ENSNFUG00015000717) #18	REL (ENSNFUG00015000908) #19	PEX13 (ENSNFUG00015000916)	SANBR (ENSNFUG00015000927) #22	XPO1B (ENSNFUG00015000944) #26	PCGF6 (ENSNFUG00015000970)	polr1b (ENSNFUG00015000987)	NANP (ENSNFUG00015001004)	cyp1b1 (ENSNFUG00015001007)	ENSNFUG00015001015	CDC42EP3 (ENSNFUG00015001023)	ENSNFUG00015001026	zgc:175280 (ENSNFUG00015001044)	RIN2 (ENSNFUG00015001140)	cyp17a1 (ENSNFUG00015001215)	ENSNFUG00015001372	NT5C2A (ENSNFUG00015001389)	CALHM3 (ENSNFUG00015001415)	HELLS (ENSNFUG00015001451)
Cyprinodontoidei	ANCESTRAL SPECIES	14	ENSGT00950000182980.a.b.b.b	ENSGT00730000110943.B.c	ENSGT00940000167711.a.b	ENSGT00940000167711.b	ENSGT00940000167711.a.a	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00530000063867.b	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y.q	ENSGT00940000156983.a.b ##16	ENSGT00390000005537 #15	ENSGT00940000158042 #14	ENSGT00390000004068
Poeciliinae	ANCESTRAL SPECIES	16	ENSGT00940000154141.B	ENSGT00940000158638	ENSGT00950000182980.a.b.b.b	ENSGT00730000110943.B.c	ENSGT00940000167711.a.a	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00530000063867.b	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y.q	ENSGT00940000156983.a.b.f ##16	ENSGT00940000156983.a.b.e ##16	ENSGT00390000005537 #15	ENSGT00940000158042 #14
Poecilia	ANCESTRAL SPECIES	11	ENSGT00940000154141.B	ENSGT00940000158638	ENSGT00950000182980.a.b.b.b	ENSGT00730000110943.B.c	ENSGT00940000167711.a.a	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00940000168731	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00530000063867.b	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y.q	ENSGT00940000156983.a.b.e ##16	ENSGT00390000005537 #15	ENSGT00940000158042 #14	ENSGT00390000004068
NAME_6	ANCESTRAL SPECIES	79										ENSGT00990000203619.A.b.b.b.a.e	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00940000168731	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00530000063867.b	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y.q	ENSGT00940000156983.a.b.e ##16	ENSGT00390000005537 #15	ENSGT00940000158042 #14	ENSGT00390000004068
Amazon molly	MODERN SPECIES	656									zfp36l2 (ENSPFOG00000012844)	ENSPFOG00000020901	ENSPFOG00000020902	haao (ENSPFOG00000012855)	papolg (ENSPFOG00000012909) #18	ENSPFOG00000013038 #19	ENSPFOG00000013086	SANBR (ENSPFOG00000013110) #22	XPO1 (ENSPFOG00000013233) #26	ENSPFOG00000013327	pcgf6 (ENSPFOG00000013331)	inaa (ENSPFOG00000013372)	sertad2b (ENSPFOG00000020903)
Sailfin molly	MODERN SPECIES	489										ENSPLAG00000018514	ENSPLAG00000018496	haao (ENSPLAG00000018481)	papolg (ENSPLAG00000018445) #18	REL (ENSPLAG00000018393) #19	ENSPLAG00000018381	SANBR (ENSPLAG00000018351) #22	XPO1 (ENSPLAG00000018279) #26	ENSPLAG00000018249	pcgf6 (ENSPLAG00000018219)	inaa (ENSPLAG00000018208)	sertad2b (ENSPLAG00000018186)
Guppy	MODERN SPECIES	445	mcfd2 (ENSPREG00000010773)	ENSPREG00000010761	TTC7A (ENSPREG00000010741)	calm2a (ENSPREG00000010724)	ENSPREG00000010681	ENSPREG00000010634	epcam (ENSPREG00000010615)	PLEKHH2 (ENSPREG00000010530)	ENSPREG00000010477	zfp36l2 (ENSPREG00000010467)	ENSPREG00000010440	ENSPREG00000010420	haao (ENSPREG00000010380)	papolg (ENSPREG00000010358) #18	ENSPREG00000010340 #19	SANBR (ENSPREG00000010270) #22	XPO1 (ENSPREG00000010135) #26	ENSPREG00000010104	pcgf6 (ENSPREG00000010092)	INA (ENSPREG00000010072)	sertad2b (ENSPREG00000010065)	slc1a4 (ENSPREG00000010052)	smap1 (ENSPREG00000010031)	b3gat2 (ENSPREG00000010002)	OGFRL1 (ENSPREG00000009987)	asrgl1 (ENSPREG00000009974)	RIMS1 (ENSPREG00000009811)	ENSPREG00000009757 ##16	fancl (ENSPREG00000009728) #15	ENSPREG00000009718 #14	wdr11 (ENSPREG00000009578)
Platyfish	MODERN SPECIES	14	mcfd2 (ENSXMAG00000007510)	TTC7A (ENSXMAG00000007479)	calm2a (ENSXMAG00000007477)	ENSXMAG00000007473	epcam (ENSXMAG00000007455)	PLEKHH2 (ENSXMAG00000007431)	ENSXMAG00000007422	zfp36l2 (ENSXMAG00000024222)	ENSXMAG00000023008	ENSXMAG00000021797	ENSXMAG00000019826	haao (ENSXMAG00000024497)	papolg (ENSXMAG00000007383) #18	REL (ENSXMAG00000007379) #19	pex13 (ENSXMAG00000007376) #21	SANBR (ENSXMAG00000007370) #22	XPO1 (ENSXMAG00000007353) #26	ENSXMAG00000007352	pcgf6 (ENSXMAG00000007347)	INA (ENSXMAG00000007342)	sertad2b (ENSXMAG00000019825)	slc1a4 (ENSXMAG00000007315)	smap1 (ENSXMAG00000007313)	b3gat2 (ENSXMAG00000007289)	OGFRL1 (ENSXMAG00000007288)	asrgl1 (ENSXMAG00000020852)	RIMS1 (ENSXMAG00000007246)	ENSXMAG00000007242 ##16	fancl (ENSXMAG00000007223) #15	ENSXMAG00000007201 #14	wdr11 (ENSXMAG00000007153)
NAME_4	ANCESTRAL SPECIES	156										ENSGT00990000203619.A.b.b.b.a.e	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00530000063867.b	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y.q	ENSGT00940000156983.a.b ##16	ENSGT00390000005537 #15	ENSGT00940000158042 #14	ENSGT00390000004068
Sheepshead minnow	MODERN SPECIES	152										ENSCVAG00000016487	ENSCVAG00000016492	haao (ENSCVAG00000016526)	papolg (ENSCVAG00000016602) #18	REL (ENSCVAG00000016622) #19	pex13 (ENSCVAG00000016636) #21	SANBR (ENSCVAG00000016699) #22	XPO1 (ENSCVAG00000016788) #26	ENSCVAG00000016826	pcgf6 (ENSCVAG00000016841)	INA (ENSCVAG00000016861)	sertad2b (ENSCVAG00000016869)	slc1a4 (ENSCVAG00000016917)	smap1 (ENSCVAG00000016930)	b3gat2 (ENSCVAG00000016951)	OGFRL1 (ENSCVAG00000016978)	asrgl1 (ENSCVAG00000016991)	ENSCVAG00000017010	RIMS1 (ENSCVAG00000000436)	ENSCVAG00000017083 ##16	fancl (ENSCVAG00000017100) #15	vrk2 (ENSCVAG00000017131) #14
Mummichog	MODERN SPECIES	2342									ENSFHEG00000019166	ENSFHEG00000019164	ENSFHEG00000019141	haao (ENSFHEG00000019125)	papolg (ENSFHEG00000019080) #18	REL (ENSFHEG00000019074) #19	pex13 (ENSFHEG00000019069) #21	SANBR (ENSFHEG00000019053) #22	XPO1 (ENSFHEG00000018974) #26	ENSFHEG00000018933 #26	ENSFHEG00000018887	pcgf6 (ENSFHEG00000018848)	INA (ENSFHEG00000018827)	sertad2b (ENSFHEG00000018821)	slc1a4 (ENSFHEG00000018816)	smap1 (ENSFHEG00000018796)	b3gat2 (ENSFHEG00000018781)	OGFRL1 (ENSFHEG00000018769)	asrgl1 (ENSFHEG00000018741)	RIMS1 (ENSFHEG00000018704)	ENSFHEG00000018587	ENSFHEG00000018409 ##16
Oryzias	ANCESTRAL SPECIES	6	ENSGT00940000158638	ENSGT00950000182980.a.b.b.b	ENSGT00730000110943.B.c	ENSGT00940000167711.a.b	ENSGT00940000167711.b	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.b ##16	ENSGT00940000155134.y	ENSGT00950000183045.A.a.a	ENSGT00390000018730.B	ENSGT00940000159583	ENSGT00940000155884.a.c	ENSGT00940000157081	ENSGT00530000063867.b	ENSGT00940000154848.a.i.a	ENSGT00940000154848.a.i.b
Oryzias_b	ANCESTRAL SPECIES	7	ENSGT00950000182980.a.b.b.b	ENSGT00730000110943.B.c	ENSGT00940000167711.a.b	ENSGT00940000167711.b	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000155076.b.b	ENSGT00990000203619.A.b.b.b.a.e.d	ENSGT00990000203619.A.b.b.b.a.e.c	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00940000168731	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.b ##16	ENSGT00940000155134.y	ENSGT00950000183045.A.a.a	ENSGT00390000018730.B	ENSGT00940000159583	ENSGT00940000155884.a.c	ENSGT00940000157081	ENSGT00530000063867.b	ENSGT01050000244840.A.a.a.h.b.f	ENSGT00940000154848.a.i.a
Indian medaka	MODERN SPECIES	27	ENSOMEG00000001496	chrna1 (ENSOMEG00000001489)	cdh11 (ENSOMEG00000001478)	ENSOMEG00000001464	MCM8 (ENSOMEG00000001455)	CRLS1 (ENSOMEG00000001438)	ENSOMEG00000001434	rhoq (ENSOMEG00000001428)	OXER1 (ENSOMEG00000001422)	OXER1 (ENSOMEG00000001420)	ENSOMEG00000001417	haao (ENSOMEG00000001413)	papolg (ENSOMEG00000001406) #18	ENSOMEG00000001401 #19	ENSOMEG00000001395	SANBR (ENSOMEG00000001393) #22	XPO1 (ENSOMEG00000001384) #26	pcgf6 (ENSOMEG00000001379)	INA (ENSOMEG00000001378)	ENSOMEG00000000008	ENSOMEG00000001371	ENSOMEG00000001358	ENSOMEG00000001344	ENSOMEG00000001323	socs5b (ENSOMEG00000001322)	ENSOMEG00000001318	ENSOMEG00000001316	mcfd2 (ENSOMEG00000001314)	TTC7A (ENSOMEG00000001309)	calm2a (ENSOMEG00000001304)	ENSOMEG00000001300
Javanese ricefish	MODERN SPECIES	6	mtx2 (ENSOJAG00000014691)	ENSOJAG00000014818	ENSOJAG00000014824	ENSOJAG00000014837	chrna1 (ENSOJAG00000014856)	ENSOJAG00000014913	ENSOJAG00000014920	ENSOJAG00000014930	OXER1 (ENSOJAG00000014957)	OXER1 (ENSOJAG00000014966)	ENSOJAG00000014992	haao (ENSOJAG00000015008)	papolg (ENSOJAG00000015154) #18	REL (ENSOJAG00000016779) #19	ENSOJAG00000016840	SANBR (ENSOJAG00000016850) #22	XPO1 (ENSOJAG00000016919) #26	pcgf6 (ENSOJAG00000017249)	INA (ENSOJAG00000017264)	ENSOJAG00000017278	ENSOJAG00000017335	ENSOJAG00000017352	ENSOJAG00000017359	ENSOJAG00000017364	ENSOJAG00000017389 #14	fancl (ENSOJAG00000017446) #15	ENSOJAG00000017511	ENSOJAG00000005991 ##16	RIMS1 (ENSOJAG00000006120)	asrgl1 (ENSOJAG00000006463)	OGFRL1 (ENSOJAG00000006473)
Oryzias_a	ANCESTRAL SPECIES	4	ENSGT00940000158638	ENSGT00950000182980.a.b.b.b	ENSGT00730000110943.B.c	ENSGT00940000167711.a.a	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00990000203619.A.b.b.b.a.e.e	ENSGT00990000203619.A.b.b.b.a.e.f	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.b ##16	ENSGT00940000155134.y	ENSGT00950000183045.A.a.a	ENSGT00390000018730.B	ENSGT00940000159583	ENSGT00940000155884.a.c	ENSGT00940000157081	ENSGT00530000063867.b	ENSGT00940000154848.a.i.a	ENSGT00940000154848.a.i.b.d.a
Chinese medaka	MODERN SPECIES	1122						ENSOSIG00000013802	PLEKHH2 (ENSOSIG00000013806)	ENSOSIG00000013836	zfp36l2 (ENSOSIG00000013840)	ENSOSIG00000013844	OXER1 (ENSOSIG00000013845)	ENSOSIG00000013847	haao (ENSOSIG00000013849)	papolg (ENSOSIG00000013860) #18	pex13 (ENSOSIG00000014509) #21	SANBR (ENSOSIG00000014510) #22	XPO1 (ENSOSIG00000014516) #26	pcgf6 (ENSOSIG00000014581)	INA (ENSOSIG00000014583)
Japanese Medaka HdrR	MODERN SPECIES	6	calm2a (ENSORLG00000027222)	ENSORLG00000028809	ENSORLG00000024025	epcam (ENSORLG00000019684)	ENSORLG00000001469	PLEKHH2 (ENSORLG00000001497)	thada (ENSORLG00000001515)	zfp36l2 (ENSORLG00000022580)	ENSORLG00000001530	ENSORLG00000023646	ENSORLG00000001535	haao (ENSORLG00000023483)	papolg (ENSORLG00000001577) #18	REL (ENSORLG00000001586) #19	pex13 (ENSORLG00000001597) #21	SANBR (ENSORLG00000001625) #22	XPO1 (ENSORLG00000001642) #26	pcgf6 (ENSORLG00000001649)	ENSORLG00000001662	ENSORLG00000029181	ENSORLG00000028110	ENSORLG00000001676 #14	fancl (ENSORLG00000001695) #15	ENSORLG00000001704 ##16	ENSORLG00000024560	RIMS1 (ENSORLG00000001748)	ENSORLG00000025163	asrgl1 (ENSORLG00000020232)	OGFRL1 (ENSORLG00000020237)	ENSORLG00000022420	ENSORLG00000028859
Percomorphaceae_C	ANCESTRAL SPECIES	18	ENSGT00940000167263	ENSGT00950000182980.a.b.b.b	ENSGT00730000110943.B.c	ENSGT00940000167711.a.b	ENSGT00940000167711.a.a	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00530000063867.b	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y	ENSGT00940000156983.a.b ##16	ENSGT00910000147025 #17	ENSGT00390000005537 #15	ENSGT00940000158042 #14
Percomorphaceae_D	ANCESTRAL SPECIES	19	ENSGT00940000167263	ENSGT00950000182980.a.b.b.b	ENSGT00730000110943.B.c	ENSGT00940000167711.a.b	ENSGT00940000167711.a.a	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00530000063867.b	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y	ENSGT00940000156983.a.b ##16	ENSGT00910000147025 #17	ENSGT00390000005537 #15	ENSGT00940000158042 #14
Anabantaria	ANCESTRAL SPECIES	17	ENSGT00940000158638	ENSGT00940000167263	ENSGT00950000182980.a.b.b.b	ENSGT00940000167711.a.b	ENSGT00940000167711.a.a	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00530000063867.b	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y	ENSGT00940000156983.a.b ##16	ENSGT00910000147025 #17	ENSGT00390000005537 #15	ENSGT00940000158042 #14
Anabantoidei	ANCESTRAL SPECIES	17	ENSGT00940000158638	ENSGT00940000167263	ENSGT00950000182980.a.b.b.b	ENSGT00940000167711.a.b	ENSGT00940000167711.a.a	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00530000063867.b	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y	ENSGT00940000156983.a.b ##16	ENSGT00910000147025 #17	ENSGT00390000005537 #15	ENSGT00940000158042 #14
Climbing perch	MODERN SPECIES	6	TTC7A (ENSATEG00000009434)	si:ch211-93n23.7 (ENSATEG00000009420)	calm2a (ENSATEG00000029989)	ENSATEG00000009335	ENSATEG00000029611	epcam (ENSATEG00000009305)	PLEKHH2 (ENSATEG00000009267)	ENSATEG00000009131	ZFP36L2 (ENSATEG00000009119)	ENSATEG00000009101	ENSATEG00000009093	ENSATEG00000009086	PAPOLG (ENSATEG00000009007) #18	REL (ENSATEG00000008984) #19	PEX13 (ENSATEG00000008975) #21	SANBR (ENSATEG00000008937) #22	XPO1 (ENSATEG00000008816) #26	ENSATEG00000029313	ENSATEG00000008747	ENSATEG00000008716	ENSATEG00000008702	ENSATEG00000008668	smap1 (ENSATEG00000027185)	b3gat2 (ENSATEG00000008614)	OGFRL1 (ENSATEG00000008583)	asrgl1 (ENSATEG00000008570)	RIMS1 (ENSATEG00000008497)	ENSATEG00000008394 ##16	ENSATEG00000027192 #17	ENSATEG00000025669	FANCL (ENSATEG00000008380) #15
Siamese fighting fish	MODERN SPECIES	6	TTC7A (ENSBSLG00000021328)	calm2a (ENSBSLG00000021159)	ENSBSLG00000021077	ENSBSLG00000021038	ENSBSLG00000020987	epcam (ENSBSLG00000020954)	PLEKHH2 (ENSBSLG00000019739)	ENSBSLG00000019710	zfp36l2 (ENSBSLG00000019709)	ENSBSLG00000019702	ENSBSLG00000019699	haao (ENSBSLG00000019690)	papolg (ENSBSLG00000017966) #18	REL (ENSBSLG00000017839) #19	pex13 (ENSBSLG00000017825) #21	SANBR (ENSBSLG00000017756) #22	XPO1 (ENSBSLG00000017320) #26	ENSBSLG00000017271	pcgf6 (ENSBSLG00000017236)	inaa (ENSBSLG00000017027)	sertad2b (ENSBSLG00000017013)	slc1a4 (ENSBSLG00000016907)	ENSBSLG00000016900	smap1 (ENSBSLG00000016727)	b3gat2 (ENSBSLG00000015905)	OGFRL1 (ENSBSLG00000015898)	asrgl1 (ENSBSLG00000015893)	RIMS1 (ENSBSLG00000014248)	ENSBSLG00000014063 ##16	ENSBSLG00000013627	ENSBSLG00000013607
Zig-zag eel	MODERN SPECIES	6	TTC7A (ENSMAMG00000011025)	si:ch211-93n23.7 (ENSMAMG00000011013)	calm2a (ENSMAMG00000010998)	ENSMAMG00000028117	ENSMAMG00000010929	epcam (ENSMAMG00000010904)	PLEKHH2 (ENSMAMG00000010890)	ENSMAMG00000010805	ZFP36L2 (ENSMAMG00000024578)	ENSMAMG00000010788	ENSMAMG00000010776	HAAO (ENSMAMG00000025680)	PAPOLG (ENSMAMG00000010667) #18	REL (ENSMAMG00000010658) #19	PEX13 (ENSMAMG00000010646) #21	SANBR (ENSMAMG00000010631) #22	XPO1 (ENSMAMG00000010568) #26	ENSMAMG00000010542	ENSMAMG00000026718	ENSMAMG00000010489	ENSMAMG00000010458	ENSMAMG00000025714	ENSMAMG00000010434	ENSMAMG00000010392	ENSMAMG00000025551	b3gat2 (ENSMAMG00000010380)	OGFRL1 (ENSMAMG00000010338)	ENSMAMG00000010296	asrgl1 (ENSMAMG00000025178)	asrgl1 (ENSMAMG00000010317)	ENSMAMG00000010214
Carangaria	ANCESTRAL SPECIES	19	ENSGT00940000167263	ENSGT00950000182980.a.b.b.b	ENSGT00730000110943.B.c	ENSGT00940000167711.a.b	ENSGT00940000167711.a.a	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00530000063867.b	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y	ENSGT00940000156983.a.b ##16	ENSGT00910000147025 #17	ENSGT00390000005537 #15	ENSGT00940000158042 #14
Carangaria_A	ANCESTRAL SPECIES	31	ENSGT00940000167263	ENSGT00950000182980.a.b.b.b	ENSGT00730000110943.B.c	ENSGT00940000167711.a.b	ENSGT00940000167711.a.a	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00530000063867.b	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y	ENSGT00940000156983.a.b ##16	ENSGT00390000005537 #15	ENSGT00940000158042 #14	ENSGT00940000153566.b
Seriola	ANCESTRAL SPECIES	14	ENSGT00940000158499	ENSGT01050000244968.d	ENSGT00940000156602	ENSGT00390000017265	ENSGT00940000155996	ENSGT00940000159204	ENSGT00940000154962.B	ENSGT00940000157274	ENSGT00940000161556	ENSGT00940000153441.a.b	ENSGT00390000000403	ENSGT00940000159406	ENSGT00940000159378	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00530000063867.b	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y	ENSGT00940000156983.a.b ##16	ENSGT00390000005537 #15	ENSGT00940000158042 #14	ENSGT00940000164978.b.c
Greater amberjack	MODERN SPECIES	30	ret (ENSSDUG00000018296)	csgalnact2 (ENSSDUG00000018272)	sec23ip (ENSSDUG00000018227)	mcmbp (ENSSDUG00000018172)	inpp5f (ENSSDUG00000018080)	bag3 (ENSSDUG00000018058)	tial1 (ENSSDUG00000018021)	PKD2L1 (ENSSDUG00000017986)	atoh7 (ENSSDUG00000017977)	MYPN (ENSSDUG00000017929)	CACUL1 (ENSSDUG00000017907)	ENSSDUG00000017890	dnajc12 (ENSSDUG00000017884)	REL (ENSSDUG00000017861) #19	pex13 (ENSSDUG00000017851) #21	SANBR (ENSSDUG00000017782) #22	XPO1 (ENSSDUG00000017709) #26	ENSSDUG00000017676	pcgf6 (ENSSDUG00000017656)	INA (ENSSDUG00000017633)	sertad2b (ENSSDUG00000017629)	slc1a4 (ENSSDUG00000017597)	smap1 (ENSSDUG00000017573)	b3gat2 (ENSSDUG00000017562)	OGFRL1 (ENSSDUG00000017527)	asrgl1 (ENSSDUG00000017515)	RIMS1 (ENSSDUG00000017330)	ENSSDUG00000017290 ##16	ENSSDUG00000017276	fancl (ENSSDUG00000017224) #15	vrk2 (ENSSDUG00000017194) #14
Yellowtail amberjack	MODERN SPECIES	3109	ret (ENSSLDG00000020309)	csgalnact2 (ENSSLDG00000020271)	sec23ip (ENSSLDG00000020204)	mcmbp (ENSSLDG00000020168)	inpp5f (ENSSLDG00000020058)	bag3 (ENSSLDG00000020035)	tial1 (ENSSLDG00000020001)	PKD2L1 (ENSSLDG00000019979)	atoh7 (ENSSLDG00000019970)	MYPN (ENSSLDG00000019939)	CACUL1 (ENSSLDG00000019914)	SIRT1 (ENSSLDG00000019885)	dnajc12 (ENSSLDG00000019879)	REL (ENSSLDG00000019718) #19	pex13 (ENSSLDG00000019689) #21	SANBR (ENSSLDG00000019651) #22	XPO1 (ENSSLDG00000019530) #26	ENSSLDG00000019493	pcgf6 (ENSSLDG00000019477)	inaa (ENSSLDG00000019464)	sertad2b (ENSSLDG00000019457)	slc1a4 (ENSSLDG00000019426)	smap1 (ENSSLDG00000019406)	b3gat2 (ENSSLDG00000019390)	mibp2 (ENSSLDG00000019383)	OGFRL1 (ENSSLDG00000019346)	asrgl1 (ENSSLDG00000019318)	RIMS1 (ENSSLDG00000019205)	ENSSLDG00000019191 ##16	fancl (ENSSLDG00000019147) #15	ENSSLDG00000019106 #14
Barramundi perch	MODERN SPECIES	511										ENSLCAG00010000994	ENSLCAG00010000995	haao (ENSLCAG00010000997)	papolg (ENSLCAG00010001158) #18	REL (ENSLCAG00010001790) #19	pex13 (ENSLCAG00010001806) #21	SANBR (ENSLCAG00010001809) #22	XPO1 (ENSLCAG00010001836) #26	ENSLCAG00010001885	pcgf6 (ENSLCAG00010001908)	inaa (ENSLCAG00010001916)	sertad2b (ENSLCAG00010001922)
Pleuronectoidei	ANCESTRAL SPECIES	28	ENSGT00940000154141.B	ENSGT00940000158638	ENSGT00940000167263	ENSGT00950000182980.a.b.b.b	ENSGT00940000167711.a.b	ENSGT00940000167711.a.a	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00530000063867.b	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y	ENSGT00940000156983.a.b ##16	ENSGT00910000147025 #17	ENSGT00390000005537 #15	ENSGT00940000158042 #14
Turbot	MODERN SPECIES	6	ENSSMAG00000015240	mcfd2 (ENSSMAG00000026884)	ENSSMAG00000015262	ENSSMAG00000015338	ENSSMAG00000023870	ENSSMAG00000015375	epcam (ENSSMAG00000015402)	PLEKHH2 (ENSSMAG00000015414)	ENSSMAG00000015466	ZFP36L2 (ENSSMAG00000036742)	ENSSMAG00000033167	HAAO (ENSSMAG00000015579)	PAPOLG (ENSSMAG00000015598) #18	REL (ENSSMAG00000015627) #19	PEX13 (ENSSMAG00000015649) #21	SANBR (ENSSMAG00000015670) #22	XPO1 (ENSSMAG00000015718) #26	ENSSMAG00000015794	ENSSMAG00000026367	ENSSMAG00000015870	ENSSMAG00000025768	ENSSMAG00000015890	ENSSMAG00000030212	smap1 (ENSSMAG00000015928)	b3gat2 (ENSSMAG00000022064)	OGFRL1 (ENSSMAG00000015991)	asrgl1 (ENSSMAG00000016011)	RIMS1 (ENSSMAG00000016024)	ENSSMAG00000016172 ##16	ENSSMAG00000036317 #17	FANCL (ENSSMAG00000016189) #15
Tongue sole	MODERN SPECIES	3	lhb (ENSCSEG00000001582)	rtn4a (ENSCSEG00000001594) #28	ENSCSEG00000001598	rps27a (ENSCSEG00000001603)	bmpr1aa (ENSCSEG00000001608)	ldb3a (ENSCSEG00000001614)	ENSCSEG00000001621	tspan14 (ENSCSEG00000001627)	perp (ENSCSEG00000001633)	TNFAIP3 (ENSCSEG00000001638)	HNRNPLL (ENSCSEG00000001646)	chchd1 (ENSCSEG00000001654)	cdk1 (ENSCSEG00000001655)	REL (ENSCSEG00000001659) #19	pex13 (ENSCSEG00000001674) #21	SANBR (ENSCSEG00000001682) #22	ENSCSEG00000001688 #26	XPO1 (ENSCSEG00000001693) #26	znf503 (ENSCSEG00000001704)	ENSCSEG00000001710	ENSCSEG00000001720	ENSCSEG00000001722	dlg5a (ENSCSEG00000001733)	anxa11a (ENSCSEG00000001754)	zcchc24 (ENSCSEG00000001838)	ppifa (ENSCSEG00000001846)	ENSCSEG00000001851	ENSCSEG00000001864	CCDC85A (ENSCSEG00000001869) #13	vrk2 (ENSCSEG00000001877) #14	fancl (ENSCSEG00000001907) #15
Eupercaria	ANCESTRAL SPECIES	15	ENSGT00940000167263	ENSGT00950000182980.a.b.b.b	ENSGT00730000110943.B.c	ENSGT00940000167711.a.b	ENSGT00940000167711.a.a	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y	ENSGT00940000156983.a.b ##16	ENSGT00910000147025 #17	ENSGT00390000005537 #15	ENSGT00940000158042 #14	ENSGT00940000164978.b.c
Eupecaria_A	ANCESTRAL SPECIES	26	ENSGT00940000167263	ENSGT00950000182980.a.b.b.b	ENSGT00730000110943.B.c	ENSGT00940000167711.a.b	ENSGT00940000167711.a.a	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y	ENSGT00940000156983.a.b ##16	ENSGT00910000147025 #17	ENSGT00390000005537 #15	ENSGT00940000158042 #14	ENSGT00940000164978.b.c
Eupecaria_B	ANCESTRAL SPECIES	26	ENSGT00940000167263	ENSGT00950000182980.a.b.b.b	ENSGT00730000110943.B.c	ENSGT00940000167711.a.b	ENSGT00940000167711.a.a	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y	ENSGT00940000156983.a.b ##16	ENSGT00910000147025 #17	ENSGT00390000005537 #15	ENSGT00940000158042 #14	ENSGT00940000164978.b.c
Perciformes	ANCESTRAL SPECIES	17	ENSGT00990000206002	ENSGT00950000182980.a.b.b.b	ENSGT00730000110943.B.c	ENSGT00940000167711.a.b	ENSGT00940000167711.a.a	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y	ENSGT00940000156983.a.b ##16	ENSGT00390000005537 #15	ENSGT00940000158042 #14	ENSGT00940000164978.b.c	ENSGT00940000157361.b #13
Cottioidei	ANCESTRAL SPECIES	68	ENSGT00940000154141.B	ENSGT00940000158638	ENSGT00950000182980.a.b.b.b	ENSGT00730000110943.B.c	ENSGT00940000167711.a.b	ENSGT00940000167711.a.a	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y
Stickleback	MODERN SPECIES	6	mcfd2 (ENSGACG00000002589)	TTC7A (ENSGACG00000002595)	calm2a (ENSGACG00000002605)	ENSGACG00000002612	ENSGACG00000002616	ENSGACG00000002617	NOP16 (ENSGACG00000002618)	epcam (ENSGACG00000002632)	ENSGACG00000002649	ENSGACG00000002656	ENSGACG00000002665	haao (ENSGACG00000002666)	papolg (ENSGACG00000002718) #18	ENSGACG00000002730	pex13 (ENSGACG00000002732) #21	SANBR (ENSGACG00000002736) #22	XPO1 (ENSGACG00000002743) #26	pcgf6 (ENSGACG00000002779)	inaa (ENSGACG00000002787)	ENSGACG00000002791	STK32C (ENSGACG00000002804)	ENSGACG00000002807	ENSGACG00000002810	PWWP2B (ENSGACG00000002816)	INPP5A (ENSGACG00000002820)	nkx6.2 (ENSGACG00000002824)	valopa (ENSGACG00000002828)	ENSGACG00000002833	ENSGACG00000002838	ENSGACG00000002843	ADGRA1 (ENSGACG00000002848)
Perciformes_a	ANCESTRAL SPECIES	40	ENSGT00940000158638	ENSGT00990000206002	ENSGT00950000182980.a.b.b.b	ENSGT00940000167711.a.b	ENSGT00940000167711.a.a	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a
Pike perch	MODERN SPECIES	62	ENSSLUG00000006966	calm2a (ENSSLUG00000006958)	ENSSLUG00000006952	ENSSLUG00000006941	epcam (ENSSLUG00000006926)	PLEKHH2 (ENSSLUG00000006893)	ENSSLUG00000006857	zfp36l2 (ENSSLUG00000006843)	OXER1 (ENSSLUG00000006838)	OXER1 (ENSSLUG00000006836)	ENSSLUG00000006825	haao (ENSSLUG00000006811)	papolg (ENSSLUG00000003953) #18	REL (ENSSLUG00000003714) #19	pex13 (ENSSLUG00000003700) #21	SANBR (ENSSLUG00000003658) #22	XPO1 (ENSSLUG00000003545) #26	ENSSLUG00000003514	pcgf6 (ENSSLUG00000003502)	inaa (ENSSLUG00000003433)	ENSSLUG00000003414	ttl (ENSSLUG00000003402)	fignl1 (ENSSLUG00000003392)	ikzf1 (ENSSLUG00000003171)	ENSSLUG00000003128	vwc2 (ENSSLUG00000003071)	zgc:110045 (ENSSLUG00000002981)	MOCOS (ENSSLUG00000002934)	si:ch211-117n7.7 (ENSSLUG00000002884)	tm9sf3 (ENSSLUG00000002739)	prdx3 (ENSSLUG00000002671)
Channel bull blenny	MODERN SPECIES	6	socs5b (ENSCGOG00000009122)	ENSCGOG00000009126	mcfd2 (ENSCGOG00000009135)	TTC7A (ENSCGOG00000009140)	calm2a (ENSCGOG00000009161)	ENSCGOG00000009609	ENSCGOG00000009653	epcam (ENSCGOG00000009655)	PLEKHH2 (ENSCGOG00000009672)	ENSCGOG00000009930	zfp36l2 (ENSCGOG00000001594)	ENSCGOG00000001611	haao (ENSCGOG00000001630)	papolg (ENSCGOG00000001797) #18	pex13 (ENSCGOG00000003867) #21	SANBR (ENSCGOG00000003891) #22	XPO1 (ENSCGOG00000004030) #26	ENSCGOG00000004984	pcgf6 (ENSCGOG00000004987)	inaa (ENSCGOG00000005000)	ENSCGOG00000005052	dnajc12 (ENSCGOG00000005083)	ENSCGOG00000005090	CACUL1 (ENSCGOG00000005138)	MYPN (ENSCGOG00000005174)	atoh7 (ENSCGOG00000005205)	PKD2L1 (ENSCGOG00000005209)	tial1 (ENSCGOG00000005253)	bag3 (ENSCGOG00000006547)	inpp5f (ENSCGOG00000006552)	mcmbp (ENSCGOG00000006647)
Eupecaria_C	ANCESTRAL SPECIES	28	ENSGT00940000167263	ENSGT00950000182980.a.b.b.b	ENSGT00730000110943.B.c	ENSGT00940000167711.a.b	ENSGT00940000167711.a.a	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y	ENSGT00940000156983.a.b ##16	ENSGT00910000147025 #17	ENSGT00390000005537 #15	ENSGT00940000158042 #14	ENSGT00940000157361.b #13
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	32	ENSGT00940000167263	ENSGT00950000182980.a.b.b.b	ENSGT00730000110943.B.c	ENSGT00940000167711.a.b	ENSGT00940000167711.a.a	ENSGT00390000018245	ENSGT00940000157675	ENSGT00390000015500	ENSGT00940000161584	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26	ENSGT00940000166025.b	ENSGT00940000158034	ENSGT00940000154418.a.a.a	ENSGT00940000157081	ENSGT00940000155884.a.c	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000183045.A.a.a	ENSGT00940000155134.y	ENSGT00940000156983.a.b ##16	ENSGT00910000147025 #17	ENSGT00390000005537 #15	ENSGT00940000158042 #14	ENSGT00940000157361.b #13
Large yellow croaker	MODERN SPECIES	2	ENSLCRG00005008400	ENSLCRG00005008397	ENSLCRG00005008382	epcam (ENSLCRG00005008381)	PLEKHH2 (ENSLCRG00005008334)	ENSLCRG00005008327	zfp36l2 (ENSLCRG00005008324)	ENSLCRG00005008323	ENSLCRG00005008322	ENSLCRG00005008321	ENSLCRG00005008319	haao (ENSLCRG00005008315)	papolg (ENSLCRG00005005738) #18	rel (ENSLCRG00005005704) #19	pex13 (ENSLCRG00005005699) #21	SANBR (ENSLCRG00005005684) #22	XPO1 (ENSLCRG00005005671) #26	ENSLCRG00005005670	pcgf6 (ENSLCRG00005005668)	inaa (ENSLCRG00005005667)	ENSLCRG00005005666	ENSLCRG00005005665	sertad2b (ENSLCRG00005005663)	ENSLCRG00005005662	slc1a4 (ENSLCRG00005005660)	smap1 (ENSLCRG00005005657)	b3gat2 (ENSLCRG00005005655)	OGFRL1 (ENSLCRG00005005654)	asrgl1 (ENSLCRG00005005652)	ENSLCRG00005005596	RIMS1 (ENSLCRG00005005586)
European seabass	MODERN SPECIES	1							ENSDLAG00005001092	ENSDLAG00005032916	ENSDLAG00005030644	ENSDLAG00005001107	ENSDLAG00005001110	ENSDLAG00005026402	PAPOLG (ENSDLAG00005001183) #18	REL (ENSDLAG00005003756) #19	PEX13 (ENSDLAG00005003780) #21	SANBR (ENSDLAG00005003788) #22	ENSDLAG00005034759 #26	ENSDLAG00005029329	ENSDLAG00005004006	ENSDLAG00005034175	ENSDLAG00005027007	ENSDLAG00005004045	smap1 (ENSDLAG00005028051)	b3gat2 (ENSDLAG00005034533)	OGFRL1 (ENSDLAG00005031770)	asrgl1 (ENSDLAG00005004145)	RIMS1 (ENSDLAG00005004444)	ENSDLAG00005008395 ##16	ENSDLAG00005008400 #17	ENSDLAG00005034298 #15	ENSDLAG00005008524 #14
Gilthead seabream	MODERN SPECIES	6	TTC7A (ENSSAUG00010009599)	si:ch211-93n23.7 (ENSSAUG00010009602)	calm2a (ENSSAUG00010009603)	ENSSAUG00010009720	ENSSAUG00010009721	epcam (ENSSAUG00010009722)	PLEKHH2 (ENSSAUG00010009733)	ENSSAUG00010009782	zfp36l2 (ENSSAUG00010009846)	OXER1 (ENSSAUG00010009848)	ENSSAUG00010009849	haao (ENSSAUG00010009852)	papolg (ENSSAUG00010009887) #18	REL (ENSSAUG00010011587) #19	pex13 (ENSSAUG00010011589) #21	SANBR (ENSSAUG00010011590) #22	XPO1 (ENSSAUG00010011605) #26	ENSSAUG00010011613	pcgf6 (ENSSAUG00010011615)	INA (ENSSAUG00010011618)	sertad2b (ENSSAUG00010011619)	slc1a4 (ENSSAUG00010011624)	ENSSAUG00010011659	ENSSAUG00010011661	b3gat2 (ENSSAUG00010011663)	OGFRL1 (ENSSAUG00010011664)	asrgl1 (ENSSAUG00010011665)	RIMS1 (ENSSAUG00010011687)	ENSSAUG00010013841 ##16	ENSSAUG00010013844	fancl (ENSSAUG00010013845) #15
Tetraodontidae	ANCESTRAL SPECIES	185											ENSGT00390000010899.a.b.b.a	ENSGT00390000013008	ENSGT00940000156467 #18	ENSGT00940000158732 #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000153408.B.s.a #26
Tetraodon	MODERN SPECIES	26	ENSTNIG00000017095	mcfd2 (ENSTNIG00000017096)	ENSTNIG00000017097	ENSTNIG00000000458	calm2a (ENSTNIG00000017098)	ENSTNIG00000017099	epcam (ENSTNIG00000017100)	PLEKHH2 (ENSTNIG00000017101)	ENSTNIG00000017102	zfp36l2 (ENSTNIG00000017103)	haao (ENSTNIG00000017104)	ENSTNIG00000017105	papolg (ENSTNIG00000017106) #18	ENSTNIG00000017107 #19	ENSTNIG00000017108	SANBR (ENSTNIG00000017109) #22	rpp30 (ENSTNIG00000018540)	nudt13 (ENSTNIG00000018541)	ENSTNIG00000002344	noc3l (ENSTNIG00000018542)	ENSTNIG00000018610	42sp43 (ENSTNIG00000018611)	ENSTNIG00000018612	ENSTNIG00000018613	wdr26b (ENSTNIG00000018614)	fez2b (ENSTNIG00000018615)	esrrgb (ENSTNIG00000017713)	st8sia2 (ENSTNIG00000018616)	ENSTNIG00000018617	ppp1r3ca (ENSTNIG00000018618)	ENSTNIG00000018656
Fugu	MODERN SPECIES	16	XPO1 (ENSTRUG00000033434) #26	pcca (ENSTRUG00000004990)	ENSTRUG00000032710	vps8 (ENSTRUG00000003896)	ENSTRUG00000027886	ENSTRUG00000027647	ctu2 (ENSTRUG00000024348)	RNF166 (ENSTRUG00000023203)	ENSTRUG00000026497	cyp17a1 (ENSTRUG00000028854)	borcs7 (ENSTRUG00000022564)	nt5c2a (ENSTRUG00000030293)	ENSTRUG00000031240	ENSTRUG00000028193	pex13 (ENSTRUG00000006329) #21	SANBR (ENSTRUG00000005912) #22	XPO1 (ENSTRUG00000027000) #26	ENSTRUG00000026660	vps8 (ENSTRUG00000026854)	ENSTRUG00000029940	ctu2 (ENSTRUG00000027026)	FAM98A (ENSTRUG00000027624)	RNF166 (ENSTRUG00000031483)	ENSTRUG00000026748	cyp17a1 (ENSTRUG00000001509)	borcs7 (ENSTRUG00000032893)	nt5c2a (ENSTRUG00000001182)	wbp1la (ENSTRUG00000032138)	fbxw4 (ENSTRUG00000001025)	fgf8a (ENSTRUG00000000925)	slc2a15a (ENSTRUG00000000474)
Pinecone sodierfish	MODERN SPECIES	6	calm2a (ENSMMDG00005021233)	ENSMMDG00005008208	ENSMMDG00005008216	epcam (ENSMMDG00005008218)	PLEKHH2 (ENSMMDG00005008226)	THADA (ENSMMDG00005008252)	zfp36l2 (ENSMMDG00005008368)	ENSMMDG00005008372	ENSMMDG00005008378	haao (ENSMMDG00005008395)	ENSMMDG00005008532	OXER1 (ENSMMDG00005008535)	papolg (ENSMMDG00005008548) #18	REL (ENSMMDG00005008558) #19	pex13 (ENSMMDG00005008563) #21	SANBR (ENSMMDG00005008566) #22	XPO1 (ENSMMDG00005008572) #26	ENSMMDG00005008626	RIN2 (ENSMMDG00005008631)	SLC24A3 (ENSMMDG00005008685)	ENSMMDG00005008891	soul2 (ENSMMDG00005008893)	CCDC85A (ENSMMDG00005008897) #13	zgc:175280 (ENSMMDG00005008900)	vrk2 (ENSMMDG00005008903) #14	fancl (ENSMMDG00005008908) #15	ENSMMDG00005008954	ENSMMDG00005008956 ##16	ENSMMDG00005008959 ##16	ENSMMDG00005008963	ENSMMDG00005008975
Cod	MODERN SPECIES	6	calm2a (ENSGMOG00000035072)	ENSGMOG00000006917	epcam (ENSGMOG00000006927)	PLEKHH2 (ENSGMOG00000006939)	THADA (ENSGMOG00000006981)	ZFP36L2 (ENSGMOG00000029927)	haao (ENSGMOG00000034156)	haao (ENSGMOG00000018752)	ENSGMOG00000026027	ENSGMOG00000020299	OXER1 (ENSGMOG00000018757)	PAPOLG (ENSGMOG00000018772) #18	ENSGMOG00000018800 #19	PEX13 (ENSGMOG00000019037) #21	ENSGMOG00000035432	SANBR (ENSGMOG00000019047) #22	ENSGMOG00000019063 #26	ENSGMOG00000013204	ENSGMOG00000013190	soul2 (ENSGMOG00000036506)	CCDC85A (ENSGMOG00000033411) #13	vrk2 (ENSGMOG00000002436) #14	fancl (ENSGMOG00000002410) #15	ENSGMOG00000025329 ##16	RIMS1 (ENSGMOG00000015757)	asrgl1 (ENSGMOG00000017200)	OGFRL1 (ENSGMOG00000031447)	ENSGMOG00000035840	ENSGMOG00000020481	b3gat2 (ENSGMOG00000033193)	smap1 (ENSGMOG00000023899)
Osteoglossiformes	ANCESTRAL SPECIES	115	ENSGT00940000166291.g	ENSGT00940000154866.B.a	ENSGT00940000166683	ENSGT01030000234532.A.a.a.b.j.a	ENSGT00940000160412.b	ENSGT00940000157361.a #13	ENSGT00940000179750	ENSGT00940000170402	ENSGT00940000157361.b #13	ENSGT00940000158042 #14	ENSGT00390000005537 #15	ENSGT00940000156983.a.a.i #16	ENSGT00940000156467.n #18	ENSGT00940000158732.l #19	ENSGT00390000016883 #21	ENSGT00390000008178 #22	ENSGT00940000155345.o	ENSGT00940000157597	ENSGT00940000161234.e	ENSGT00390000016551	ENSGT00950000183050.b.b.b.a.a.b.b	ENSGT00940000166587	ENSGT00940000155337.`b.b	ENSGT00940000154186.a.q	ENSGT00530000063867.b	ENSGT00940000157081.h	ENSGT00810000125473.A	ENSGT00940000155078.a.b.a.b	ENSGT00940000154556.e.b	ENSGT00940000154556.e.a	ENSGT00940000156841.b
Asian bonytongue	MODERN SPECIES	19	ENSSFOG00015003071	ddx43 (ENSSFOG00015012193)	CGAS (ENSSFOG00015012161)	EEF1A1 (ENSSFOG00015012136)	slc17a5 (ENSSFOG00015012119)	ENSSFOG00015029442	ENSSFOG00015012058	ENSSFOG00015030330	ENSSFOG00015012043 #13	vrk2 (ENSSFOG00015011998) #14	fancl (ENSSFOG00015011964) #15	bcl11aa (ENSSFOG00015026685) #16	papolg (ENSSFOG00015011874) #18	rel (ENSSFOG00015011855) #19	pex13 (ENSSFOG00015026130) #21	SANBR (ENSSFOG00015011799) #22	ENSSFOG00015011598 #26	B3GNT2 (ENSSFOG00015024343)	EHBP1 (ENSSFOG00015011508)	otx1 (ENSSFOG00015011487)	WDPCP (ENSSFOG00015027973)	MDH1 (ENSSFOG00015011431)	ugp2a (ENSSFOG00015011405)	ENSSFOG00015032922	ENSSFOG00015011260	lgalsla (ENSSFOG00015028463)	ENSSFOG00015027086	ENSSFOG00015011233	ENSSFOG00015028900	SLC1A4 (ENSSFOG00015011220)	cep68 (ENSSFOG00015028803)
P. kingsleyae	MODERN SPECIES	11	ENSPKIG00000002858	ddx43 (ENSPKIG00000002941)	eef1a1b (ENSPKIG00000002973)	slc17a5 (ENSPKIG00000002993)	RIN2 (ENSPKIG00000003022)	ENSPKIG00000003049	SLC24A3 (ENSPKIG00000003070)	soul2 (ENSPKIG00000003106)	ccdc85a (ENSPKIG00000003135) #13	ENSPKIG00000003162	fancl (ENSPKIG00000003202) #15	bcl11aa (ENSPKIG00000003260) #16	papolg (ENSPKIG00000003313) #18	ENSPKIG00000003400 #19	pex13 (ENSPKIG00000003409) #21	SANBR (ENSPKIG00000003437) #22	ENSPKIG00000003545 #26	ENSPKIG00000003715	B3GNT2 (ENSPKIG00000003847)	EHBP1 (ENSPKIG00000004032)	otx1 (ENSPKIG00000004281)	WDPCP (ENSPKIG00000004302)	mdh1ab (ENSPKIG00000004347)	ugp2b (ENSPKIG00000004404)	ENSPKIG00000004483	ENSPKIG00000004509	LGALSL (ENSPKIG00000004562)	ENSPKIG00000004596	ENSPKIG00000004619	slc1a4 (ENSPKIG00000004639)	cep68 (ENSPKIG00000004675)
Spotted gar	MODERN SPECIES	654	eef1a1b (ENSLOCG00000016168)	slc17a5 (ENSLOCG00000016166)	RIN2 (ENSLOCG00000016163)	SLC24A3 (ENSLOCG00000016155)	dtd1 (ENSLOCG00000016152)	sec23b (ENSLOCG00000016145)	ENSLOCG00000016143	ccdc85a (ENSLOCG00000016142) #13	vrk2 (ENSLOCG00000016138) #14	fancl (ENSLOCG00000016137) #15	bcl11aa (ENSLOCG00000016135) #16	papolg (ENSLOCG00000016130) #18	rel (ENSLOCG00000016127) #19	pus10 (ENSLOCG00000016123) #20	pex13 (ENSLOCG00000016122) #21	SANBR (ENSLOCG00000016119) #22	ENSLOCG00000016117	ENSLOCG00000016116	ENSLOCG00000016115	USP34 (ENSLOCG00000016101) #25	XPO1 (ENSLOCG00000016095) #26	ENSLOCG00000016094	ENSLOCG00000016093	FAM161A (ENSLOCG00000016091)	cct4 (ENSLOCG00000016088)	commd1 (ENSLOCG00000016086)	b3gnt2a (ENSLOCG00000016084)	ENSLOCG00000016082	EHBP1 (ENSLOCG00000016075)	otx1 (ENSLOCG00000016074)	WDPCP (ENSLOCG00000016068)
Reedfish	MODERN SPECIES	6	PPP4R3C (ENSECRG00000021906) #10	PNPT1 (ENSECRG00000021823) #11	ENSECRG00000021808	EFEMP1 (ENSECRG00000021047) #12	ENSECRG00000020968	ccdc85a (ENSECRG00000020939) #13	ENSECRG00000020918	vrk2 (ENSECRG00000020854) #14	fancl (ENSECRG00000020815) #15	bcl11aa (ENSECRG00000020774) #16	papolg (ENSECRG00000020728) #18	rel (ENSECRG00000020700) #19	ENSECRG00000020676 #20	ENSECRG00000020656	pex13 (ENSECRG00000020640) #21	SANBR (ENSECRG00000020613) #22	ENSECRG00000020605	USP34 (ENSECRG00000020472) #25	dnaaf10 (ENSECRG00000020385)	pno1 (ENSECRG00000020369)	ints9 (ENSECRG00000020351)	c1d (ENSECRG00000020336)	ENSECRG00000020320	meis1b (ENSECRG00000020236)	spred2b (ENSECRG00000020195)	ACTR2 (ENSECRG00000020143)	zgc:153169 (ENSECRG00000020103)	rab1ab (ENSECRG00000020049)	ENSECRG00000020001	sertad2b (ENSECRG00000019987)	aftpha (ENSECRG00000019951)
Elephant shark	MODERN SPECIES	1508	mtif2 (ENSCMIG00000003573)	ENSCMIG00000003553	ENSCMIG00000003503	CCDC88A (ENSCMIG00000003408) #7	PPP4R3C (ENSCMIG00000003346) #10	ENSCMIG00000003322 #9	PNPT1 (ENSCMIG00000003245) #11	EFEMP1 (ENSCMIG00000003124) #12	ccdc85a (ENSCMIG00000003088) #13	ENSCMIG00000003085 #14	fancl (ENSCMIG00000003084) #15	bcl11aa (ENSCMIG00000003083) #16	papolg (ENSCMIG00000002931) #18	rel (ENSCMIG00000002772) #19	pus10 (ENSCMIG00000002725) #20	SANBR (ENSCMIG00000002686) #22	USP34 (ENSCMIG00000002560) #25	FAM161A (ENSCMIG00000002520)	cct4 (ENSCMIG00000002389)	commd1 (ENSCMIG00000002319)	b3gnt2a (ENSCMIG00000002317)	ENSCMIG00000002311	ENSCMIG00000002307	EHBP1 (ENSCMIG00000002230)	WDPCP (ENSCMIG00000002187)	mdh1 (ENSCMIG00000002025)	ugp2 (ENSCMIG00000001606)	vps54 (ENSCMIG00000001326)	PELI1 (ENSCMIG00000001287)	lgalslb (ENSCMIG00000001270)	tbp (ENSCMIG00000001238)