Osteoglossocephalai	ANCESTRAL SPECIES	184	ENSGT00940000155488	ENSGT00940000157880.g.b	ENSGT00940000157880.g.a	ENSGT00940000179751	ENSGT00390000003114.e.b.b	ENSGT00390000001296	ENSGT00390000012690	ENSGT00940000155721.b.a	ENSGT00950000183130.C	ENSGT00950000183186.B.b.d ##18	ENSGT00390000010209.c.a ##19	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00940000155579.a	ENSGT00510000047245	ENSGT00940000155873	ENSGT00500000044921.b	ENSGT00500000044921.a	ENSGT00940000157845	ENSGT00940000159017.a.a	ENSGT00500000045044	ENSGT00390000018500.b.b.b
Clupeocephala	ANCESTRAL SPECIES	48	ENSGT00940000158416.q.a #7	ENSGT00940000157284.cb.a #8	ENSGT00390000008751.a.fb #9	ENSGT00390000001960 #10	ENSGT00940000157390 #11	ENSGT00940000159171 #12	ENSGT00390000018031 #13	ENSGT00940000156549.a.a #14	ENSGT00940000153634.b.a #15	ENSGT00950000182834.B #16	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00940000155579.a	ENSGT00510000047245	ENSGT00940000155873	ENSGT00500000044921.b	ENSGT00500000044921.a	ENSGT00940000157845	ENSGT00940000159017.a.a	ENSGT00940000162584.j	ENSGT00940000157640	ENSGT00940000164984	ENSGT01000000214440.A.a.a	ENSGT00940000157432.B	ENSGT00940000169325	ENSGT00390000009631	ENSGT00650000093438
Otomorpha	ANCESTRAL SPECIES	62	ENSGT00940000158416.q.a #7	ENSGT00940000157284.cb.a #8	ENSGT00390000008751.a.fb #9	ENSGT00390000001960 #10	ENSGT00940000157390 #11	ENSGT00940000159171 #12	ENSGT00390000018031 #13	ENSGT00940000156549.a.a #14	ENSGT00940000153634.b.a #15	ENSGT00950000182834.B #16	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22
Clupeiformes	DUPLICATION
Clupeiformes	ANCESTRAL SPECIES		ENSGT00940000158416.q.a #7	ENSGT00940000157284.cb.a #8	ENSGT00390000008751.a.fb #9	ENSGT00390000001960 #10	ENSGT00940000157390 #11	ENSGT00940000159171 #12	ENSGT00390000018031 #13	ENSGT00940000156549.a.a #14	ENSGT00940000153634.b.a #15	ENSGT00950000182834.B #16	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019.j #22	ENSGT00940000160074 #23	ENSGT00940000161197 #24	ENSGT00390000014743.j #25	ENSGT00550000075069 #26	ENSGT00940000154244.B #27	ENSGT00510000048131 #28	ENSGT01050000244894.a.a.a.a #29	ENSGT01030000234564.a.b #30	ENSGT00550000074829 #31	ENSGT00940000166165 #32	ENSGT00940000153615.b #33	ENSGT00950000182805.a.a.b.a.c.a #34	ENSGT00390000005023.a #35	ENSGT00940000153675.a.a.a.a.b #36	ENSGT00940000166118 #37
Denticle herring	MODERN SPECIES	15	gprc6a (ENSDCDG00000030379) #7	vegfaa (ENSDCDG00000030391) #8	NAGA (ENSDCDG00000000250) #9	rrp15 (ENSDCDG00000000294) #10	tgfb2 (ENSDCDG00000000320) #11	lyplal1 (ENSDCDG00000000332) #12	preb (ENSDCDG00000000347) #13	ADCY3 (ENSDCDG00000000395) #14	WDR26 (ENSDCDG00000000443) #15	CNIH4 (ENSDCDG00000000481) #16	FEZ2 (ENSDCDG00000000498) #17	CLEC3B (ENSDCDG00000000521) #18	cdcp1a (ENSDCDG00000000524) #19	TMEM158 (ENSDCDG00000000530) #20	lars2 (ENSDCDG00000000610) #21	LIMD1 (ENSDCDG00000000830) #22	CYTH2 (ENSDCDG00000000861) #23	SPHK2 (ENSDCDG00000001007) #24	cnot3a (ENSDCDG00000001051) #25	prpf31 (ENSDCDG00000001087) #26	ENSDCDG00000001098 #27	leng1 (ENSDCDG00000001104) #28	ENSDCDG00000001116 #29	mboat7 (ENSDCDG00000001121) #30	rps9 (ENSDCDG00000001127) #31	rbfox1l (ENSDCDG00000001133) #32	ENSDCDG00000001139 #33	ENO2 (ENSDCDG00000001162) #34	mlf2 (ENSDCDG00000001234) #35	cdc42l (ENSDCDG00000001244) #36	wnt4b (ENSDCDG00000001254) #37
Atlantic herring	MODERN SPECIES	2	ENSCHAG00000007756	AGO3 (ENSCHAG00000007795)	ENSCHAG00000007907	sema6e (ENSCHAG00000007943)	ENSCHAG00000008785	gabpb2b (ENSCHAG00000008795)	atg5 (ENSCHAG00000008806)	prdm1a (ENSCHAG00000008829)	ENSCHAG00000008866	sri (ENSCHAG00000008907)	snrnp48 (ENSCHAG00000008916)	ENSCHAG00000008927	ENSCHAG00000008995	TMEM158 (ENSCHAG00000009004) #20	lars2 (ENSCHAG00000009063) #21	LIMD1 (ENSCHAG00000010053) #22	CYTH2 (ENSCHAG00000010359) #23	ENSCHAG00000012513 #24	cnot3a (ENSCHAG00000012532) #25	prpf31 (ENSCHAG00000012582) #26	ENSCHAG00000013189 #27	leng1 (ENSCHAG00000013196) #28	ENSCHAG00000013225 #29	mboat7 (ENSCHAG00000013239) #30	rps9 (ENSCHAG00000013264) #31	rbfox1l (ENSCHAG00000013284) #32	ENSCHAG00000013304	ENSCHAG00000013328 #33	ENO2 (ENSCHAG00000013340) #34	mlf2 (ENSCHAG00000013580) #35	cdc42l (ENSCHAG00000013642) #36
Clupeiformes	ANCESTRAL SPECIES	42					ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000155488.n	ENSGT00940000157880.g.b	ENSGT00390000012690.b	ENSGT00940000155721.b.a	ENSGT00950000183130.C	ENSGT00950000183186.B.b.d ##18	ENSGT00390000010209.c.a ##19	ENSGT00940000159019.i ##22	ENSGT00390000008146	ENSGT00530000064035.a	ENSGT00940000170244	ENSGT01060000248556.A.a.a.b	ENSGT00940000155779.a.b	ENSGT00390000010806	ENSGT00940000160769	ENSGT00390000002843.b	ENSGT00940000154708	ENSGT00910000144740	ENSGT00910000144759	ENSGT00510000049347.h	ENSGT00390000003781.e.b	ENSGT00950000183161.a.a	ENSGT00440000035378.c.b
Atlantic herring	MODERN SPECIES	10	ENSCHAG00000010580	ENSCHAG00000010618	HERPUD2 (ENSCHAG00000010629)	ENSCHAG00000010636	SLC4A7 (ENSCHAG00000010801)	eomesa (ENSCHAG00000011934)	ENSCHAG00000012075	TGFBR2 (ENSCHAG00000012929)	STT3B (ENSCHAG00000012942)	OSBPL10 (ENSCHAG00000013053)	TMEM42 (ENSCHAG00000013078)	zdhhc3b (ENSCHAG00000013088)	exosc7 (ENSCHAG00000013145)	CLEC3B (ENSCHAG00000013170) ##18	CDCP1 (ENSCHAG00000013198) ##19	ENSCHAG00000013258 ##22	nrm (ENSCHAG00000013268)	ENSCHAG00000013276	cratb (ENSCHAG00000013339)	ppt2b (ENSCHAG00000015247)	rps5 (ENSCHAG00000015626)	ENSCHAG00000015686	ddah2 (ENSCHAG00000015703)	ENSCHAG00000015720	clic1 (ENSCHAG00000015726)	ENSCHAG00000015734	ENSCHAG00000015757	ENSCHAG00000015764	ENSCHAG00000015787	ENSCHAG00000015804	csnk2b (ENSCHAG00000015812)
Otophysi	ANCESTRAL SPECIES	56	ENSGT00940000158416.q.a #7	ENSGT00940000157284.cb.a #8	ENSGT00390000008751.a.fb #9	ENSGT00390000001960 #10	ENSGT00940000157390 #11	ENSGT00940000159171 #12	ENSGT00390000018031 #13	ENSGT00940000156549.a.a #14	ENSGT00940000153634.b.a #15	ENSGT00950000182834.B #16	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22
Characiphysae	ANCESTRAL SPECIES		ENSGT00940000156934.l	ENSGT00940000164400	ENSGT00730000112261	ENSGT00940000159740	ENSGT00390000017282	ENSGT00930000151038	ENSGT00940000161462	ENSGT00390000014242.l	ENSGT00950000182991.A.a.c.a.b	ENSGT00950000183108.b.a.b	ENSGT00940000153801.b	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00880000138038	ENSGT00950000182982.A.a	ENSGT00950000182982.C.c.a	ENSGT01050000244838.D.a.a	ENSGT00390000016210	ENSGT00950000182984.a	ENSGT00940000156533	ENSGT00940000157191.c	ENSGT00940000156277	ENSGT00940000154868.a.a	ENSGT00390000003986	ENSGT00390000003774.a.a.d	ENSGT00940000166468	ENSGT00940000161549.a.b	ENSGT00940000162855.a.a.a.a
Characiphysae_b	ANCESTRAL SPECIES	2	ENSGT00940000156934.l	ENSGT00940000164400	ENSGT00730000112261	ENSGT00940000159740	ENSGT00390000017282	ENSGT00930000151038	ENSGT00940000161462	ENSGT00390000014242.l	ENSGT00950000182991.A.a.c.a.b	ENSGT00950000183108.b.a.b	ENSGT00940000153801.b	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00880000138038	ENSGT00950000182982.A.a	ENSGT00950000182982.C.c.a	ENSGT01050000244838.D.a.a	ENSGT00390000016210	ENSGT00950000182984.a	ENSGT00940000156533	ENSGT00940000157191.c	ENSGT00940000156277	ENSGT00940000154868.a.a	ENSGT00390000003986	ENSGT00390000003774.a.a.d	ENSGT00940000166468	ENSGT00940000161549.a.b	ENSGT00940000162855.a.a.a.a
Characoidei	ANCESTRAL SPECIES	172	ENSGT00940000156934.l	ENSGT00940000164400	ENSGT00730000112261	ENSGT00940000159740	ENSGT00390000017282	ENSGT00930000151038	ENSGT00940000161462	ENSGT00390000014242.l	ENSGT00950000182991.A.a.c.a.b	ENSGT00950000183108.b.a.b	ENSGT00940000153801.b	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22
Red-bellied piranha	MODERN SPECIES	231	ccne2 (ENSPNAG00000022486)	ENSPNAG00000022471	gbp (ENSPNAG00000022333)	KCNV1 (ENSPNAG00000004715)	dek (ENSPNAG00000022282)	aldh5a1 (ENSPNAG00000022230)	KIAA0319 (ENSPNAG00000022182)	ENSPNAG00000022162	pnp4b (ENSPNAG00000022141)	CALB1 (ENSPNAG00000022125)	decr1 (ENSPNAG00000022071)	CLEC3B (ENSPNAG00000022032) #18	cdcp1a (ENSPNAG00000003704) #19	TMEM158 (ENSPNAG00000021887) #20	lars2 (ENSPNAG00000021872) #21	LIMD1 (ENSPNAG00000021803) #22
Mexicana tetra	MODERN SPECIES	2	ccne2 (ENSAMXG00000015503)	ENSAMXG00000015542	gbp (ENSAMXG00000030584)	KCNV1 (ENSAMXG00000015593)	dek (ENSAMXG00000031779)	aldh5a1 (ENSAMXG00000015628)	ENSAMXG00000015657	TDP2 (ENSAMXG00000036549)	pnp4b (ENSAMXG00000040503)	CALB1 (ENSAMXG00000015733)	decr1 (ENSAMXG00000015751)	CLEC3B (ENSAMXG00000015766) #18	cdcp1a (ENSAMXG00000030507) #19	TMEM158 (ENSAMXG00000042846) #20	lars2 (ENSAMXG00000010970) #21	LIMD1 (ENSAMXG00000035643) #22	ENSAMXG00000029346	E2F3 (ENSAMXG00000029259)	mboat1 (ENSAMXG00000019602) ##30	TMEM65 (ENSAMXG00000019586)	MTSS1 (ENSAMXG00000019571)	ENSAMXG00000033407	ENSAMXG00000039672	RDH13 (ENSAMXG00000019556)	decr2 (ENSAMXG00000040698)	rab11fip3 (ENSAMXG00000019520)	AGL (ENSAMXG00000019499)	ENSAMXG00000019467	ddc (ENSAMXG00000019455)	GRB10 (ENSAMXG00000019421)	ENSAMXG00000036059
Electric eel	MODERN SPECIES	5	tp53inp1 (ENSEEEG00000023040)	ccne2 (ENSEEEG00000023039)	ENSEEEG00000023038	gbp (ENSEEEG00000023035)	KCNV1 (ENSEEEG00000023034)	dek (ENSEEEG00000023033)	aldh5a1 (ENSEEEG00000023032)	ENSEEEG00000023031	ENSEEEG00000023030	pnp4b (ENSEEEG00000023029)	decr1 (ENSEEEG00000023025)	CLEC3B (ENSEEEG00000023024) #18	cdcp1a (ENSEEEG00000023023) #19	TMEM158 (ENSEEEG00000023022) #20	lars2 (ENSEEEG00000022937) #21	LIMD1 (ENSEEEG00000022913) #22	ECHDC1 (ENSEEEG00000022911)	si:ch211-151o1.4 (ENSEEEG00000022910)	SOGA3 (ENSEEEG00000022909)	elovl4a (ENSEEEG00000022907)	dctn3 (ENSEEEG00000022905)	ttk (ENSEEEG00000022901)	bckdhb (ENSEEEG00000022898)	TENT5A (ENSEEEG00000022897)	IBTK (ENSEEEG00000022885)	tpbgb (ENSEEEG00000022881)	ube3d (ENSEEEG00000022880)	zgc:91890 (ENSEEEG00000022878)	ENSEEEG00000022876	ENSEEEG00000022875	ENSEEEG00000021146
Channel catfish	MODERN SPECIES		ENSIPUG00000020769	gbp (ENSIPUG00000020765)	KCNV1 (ENSIPUG00000020757)	DEK (ENSIPUG00000020747)	aldh5a1 (ENSIPUG00000020733)	ENSIPUG00000020721	tdp2 (ENSIPUG00000020716)	pnp4b (ENSIPUG00000020713)	CALB1 (ENSIPUG00000020694)	decr1 (ENSIPUG00000020677)	CYP7B1 (ENSIPUG00000020666)	clec3ba (ENSIPUG00000020647) #18	cdcp1a (ENSIPUG00000020638) #19	tmem158 (ENSIPUG00000020637) #20	lars2 (ENSIPUG00000020564) #21	limd1 (ENSIPUG00000020545) #22	echdc1 (ENSIPUG00000020533)	kiaa0408 (ENSIPUG00000020512)	soga3 (ENSIPUG00000020495)	ELOVL4 (ENSIPUG00000020479)	dctn3 (ENSIPUG00000020467)	ttk (ENSIPUG00000020423)	bckdhb (ENSIPUG00000020377)	TENT5A (ENSIPUG00000020362)	ibtk (ENSIPUG00000020308)	tpbg (ENSIPUG00000020291)	ube3d (ENSIPUG00000020262)	zgc:91890 (ENSIPUG00000020255)	ENSIPUG00000020241	ENSIPUG00000020234	ENSIPUG00000020055
Cyprinoidei	DUPLICATION
Cyprinoidei	ANCESTRAL SPECIES	186		ENSGT00390000008611	ENSGT00940000157284.cb.a.a #8	ENSGT00390000001960 #10	ENSGT00940000157390 #11	ENSGT00940000159171 #12	ENSGT00390000018031 #13	ENSGT00940000156549.a.a #14	ENSGT00940000153634.b.a #15	ENSGT00950000182834.B #16	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019.g #22
Cyprininae	ANCESTRAL SPECIES	762															ENSGT00390000010209.c.b.b #19	ENSGT00940000159019.g #22	ENSGT01030000234583.a.a.c.b.a.a.a.b.b.a.a.a.b.b	ENSGT00950000183182.a.a	ENSGT00940000156592	ENSGT00940000153295.a.a.a	ENSGT00940000163299.B.a.b.d.b.a.b.b.b.a	ENSGT00390000015364.b	ENSGT00940000157291.h	ENSGT00940000156762.d
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	7	ENSCARG00000019210	cyp4t8 (ENSCARG00000018374)	ttc29 (ENSCARG00000018301)	vegfaa (ENSCARG00000018266) #8	rrp15 (ENSCARG00000018253) #10	tgfb2 (ENSCARG00000018246) #11	lyplal1 (ENSCARG00000018223) #12	preb (ENSCARG00000018212) #13	ADCY3 (ENSCARG00000017291) #14	WDR26 (ENSCARG00000017133) #15	CNIH4 (ENSCARG00000017114) #16	FEZ2 (ENSCARG00000017100) #17	cdcp1a (ENSCARG00000017081) #19	TMEM158 (ENSCARG00000017075) #20	ENSCARG00000017070	LIMD1 (ENSCARG00000017030) #22	ENSCARG00000017013	ENSCARG00000017009	smpdl3b (ENSCARG00000017003)	LIN28A (ENSCARG00000017001)	ENSCARG00000016997	mtf1 (ENSCARG00000016975)	INPP5B (ENSCARG00000016203)	ENSCARG00000016172	ZC3H12A (ENSCARG00000016167)	ENSCARG00000016158	ENSCARG00000016153	GRIK3 (ENSCARG00000015279)	csf3r (ENSCARG00000015232)	cyb5r4 (ENSCARG00000015193)	ENSCARG00000015182
Goldfish	MODERN SPECIES	35	ncalda (ENSCARG00000012233)	grhl2a (ENSCARG00000012244)	ENSCARG00000012513	psmd4b (ENSCARG00000012525)	lyplal1 (ENSCARG00000012781) #12	preb (ENSCARG00000012787) #13	ADCY3 (ENSCARG00000012815) #14	WDR26 (ENSCARG00000013312) #15	CNIH4 (ENSCARG00000013652) #16	CLEC3B (ENSCARG00000013656) #18	cdcp1a (ENSCARG00000013663) #19	TMEM158 (ENSCARG00000013673) #20	lars2 (ENSCARG00000013812) #21	ENSCARG00000017991	ENSCARG00000017998	LIMD1 (ENSCARG00000018013) #22	mecr (ENSCARG00000018040)	LIN28A (ENSCARG00000018107)	ENSCARG00000018114	yrdc (ENSCARG00000018123)	mtf1 (ENSCARG00000018139)	INPP5B (ENSCARG00000018165)	ZC3H12A (ENSCARG00000018401)	ENSCARG00000018407	ENSCARG00000018418	lmna (ENSCARG00000018430)	ENSCARG00000018512	pdia7 (ENSCARG00000018531)	cct3 (ENSCARG00000018570)	ENSCARG00000018682	esrp1 (ENSCARG00000018699)
Cyprininae_a	DUPLICATION
Cyprininae_a	ANCESTRAL SPECIES	244															ENSGT00390000010209.c.b.b #19	ENSGT00940000159019.g.c #22	ENSGT01030000234583.a.a.c.b.a.a.a.b.b.a.a.a.b.b	ENSGT00950000183182.a.a	ENSGT00940000156592	ENSGT00940000153295.a.a.a	ENSGT00940000163299.B.a.b.d.b.a.b.b.b.a	ENSGT00390000015364.b	ENSGT00940000157291.h	ENSGT00940000156762.d	ENSGT00940000157291.g.a.a	ENSGT00940000156762.c.a	ENSGT00990000203803.b	ENSGT00940000155107.a.a.a.c	ENSGT00940000159465.g.a	ENSGT00940000158915.e	ENSGT00940000155536.u
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	257					rrp15 (ENSSGRG00000023838) #10	tgfb2 (ENSSGRG00000023813) #11	lyplal1 (ENSSGRG00000023810) #12	preb (ENSSGRG00000023808) #13	ADCY3 (ENSSGRG00000023595) #14	WDR26 (ENSSGRG00000023314) #15	CNIH4 (ENSSGRG00000023311) #16	FEZ2 (ENSSGRG00000023310) #17	CLEC3B (ENSSGRG00000023309) #18	cdcp1a (ENSSGRG00000023307) #19	ENSSGRG00000023306 #20	ENSSGRG00000023300 #22	ENSSGRG00000023298	smpdl3b (ENSSGRG00000023294)	mecr (ENSSGRG00000023292)	LIN28A (ENSSGRG00000023280)	yrdc (ENSSGRG00000023276)	mtf1 (ENSSGRG00000023263)	ENSSGRG00000023261	ENSSGRG00000023253	GRIK3 (ENSSGRG00000023233)	ENSSGRG00000023230	csf3r (ENSSGRG00000023226)	cyb5r4 (ENSSGRG00000023172)	HACE1 (ENSSGRG00000023143)
Golden-line barbel	MODERN SPECIES	820					bpnt2 (ENSSGRG00000011962)	tgfb2 (ENSSGRG00000011940) #11	lyplal1 (ENSSGRG00000011934) #12	preb (ENSSGRG00000011916) #13	ADCY3 (ENSSGRG00000011567) #14	WDR26 (ENSSGRG00000011497) #15	CNIH4 (ENSSGRG00000011488) #16	CLEC3B (ENSSGRG00000011487) #18	cdcp1a (ENSSGRG00000011486) #19	TMEM158 (ENSSGRG00000011485) #20	lars2 (ENSSGRG00000010779) #21	ENSSGRG00000010761 #22	ENSSGRG00000010750	smpdl3b (ENSSGRG00000010748)	ENSSGRG00000010747	ENSSGRG00000010745	ENSSGRG00000010744	ENSSGRG00000010743
Common carp reference	MODERN SPECIES	47	ENSCCRG00000041842	ENSCCRG00000009212	ENSCCRG00000054910 #8	tgfb2 (ENSCCRG00000018324) #11	ENSCCRG00000073627	ENSCCRG00000056101	lyplal1 (ENSCCRG00000058835) #12	ENSCCRG00000077339	ENSCCRG00000076103	preb (ENSCCRG00000015211) #13	ENSCCRG00000067255 #14	ENSCCRG00000039903 #15	ENSCCRG00000028547 #16	ENSCCRG00000027174 #17	ENSCCRG00000027161 #19	ENSCCRG00000082245 #22	ENSCCRG00000038523	smpdl3b (ENSCCRG00000030104)	ENSCCRG00000018124	ENSCCRG00000018112	ENSCCRG00000071762	ENSCCRG00000082162	mtf1 (ENSCCRG00000065815)	ENSCCRG00000042848	ENSCCRG00000042797	ZC3H12A (ENSCCRG00000009612)	ENSCCRG00000059600	ENSCCRG00000060213	ENSCCRG00000052614	ENSCCRG00000056036	ENSCCRG00000067229
Cyprininae_a	ANCESTRAL SPECIES	296	ENSGT00940000157284.cb.a.a.b #8	ENSGT00940000157390.i #11	ENSGT00940000159171.j #12	ENSGT00390000018031.e #13	ENSGT00940000156549.a.a.h #14	ENSGT00940000153634.b.a.b #15	ENSGT00390000018031.f.a #13	ENSGT00940000156549.a.a.g.a.a #14	ENSGT00940000153634.b.a.a.a #15	ENSGT00950000182834.B.g #16	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b.a #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019.g.d #22
Common carp reference	MODERN SPECIES	2	ENSCCRG00000043643	ENSCCRG00000076622	ENSCCRG00000007628	ENSCCRG00000060914 #8	RRP15 (ENSCCRG00000035992) #10	tgfb2 (ENSCCRG00000063631) #11	lyplal1 (ENSCCRG00000010384) #12	preb (ENSCCRG00000038722) #13	ENSCCRG00000072973 #14	ENSCCRG00000043433 #15	ENSCCRG00000056837 #16	CLEC3B (ENSCCRG00000055341) #18	ENSCCRG00000049856 #19	TMEM158 (ENSCCRG00000065652) #20	lars2 (ENSCCRG00000029141) #21	LIMD1 (ENSCCRG00000067040) #22	ENSCCRG00000077662	ENSCCRG00000034002	ENSCCRG00000077100	yrdc (ENSCCRG00000067697)	mtf1 (ENSCCRG00000065608)	INPP5B (ENSCCRG00000044970)	ENSCCRG00000026074	ZC3H12A (ENSCCRG00000051373)	ENSCCRG00000054997	ENSCCRG00000066745	ENSCCRG00000003538	ENSCCRG00000035973	ENSCCRG00000080614	csf3r (ENSCCRG00000013947)	ENSCCRG00000054332
Zebrafish	MODERN SPECIES	19	ENSDARG00000101571	ENSDARG00000098218	ENSDARG00000104956	ENSDARG00000103314	ENSDARG00000090392	ENSDARG00000099112	ENSDARG00000098369	ENSDARG00000103197	si:dkey-71l4.4 (ENSDARG00000104916)	ENSDARG00000102468	ENSDARG00000103844	CPNE8 (ENSDARG00000102191)	ABCD2 (ENSDARG00000059409)	SLC2A13 (ENSDARG00000087867)	NAA40 (ENSDARG00000090570)	ENSDARG00000112073 #22	ENSDARG00000100624	large1 (ENSDARG00000005126)	kiaa0930 (ENSDARG00000068830)	nup50 (ENSDARG00000017454)	PHF21B (ENSDARG00000109502)	KCNA1 (ENSDARG00000017108)	ENSDARG00000105746	ENSDARG00000091499	ptprb (ENSDARG00000076624)	PTPRR (ENSDARG00000105744)	trim24 (ENSDARG00000103350)	ENSDARG00000105760	rab21 (ENSDARG00000100752)	ENSDARG00000086576	ENSDARG00000116221
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00940000159019.h #22
Zebrafish	MODERN SPECIES	7	GRIK2 (ENSDARG00000113771)	HACE1 (ENSDARG00000062280)	ENSDARG00000051912	ENSDARG00000113659	CNIH4 (ENSDARG00000087759) #16	WDR26 (ENSDARG00000062310) #15	ADCY3 (ENSDARG00000077145) #14	preb (ENSDARG00000101602) #13	lyplal1 (ENSDARG00000088764) #12	tgfb2 (ENSDARG00000027087) #11	acot22 (ENSDARG00000058945)	FEZ2 (ENSDARG00000073784) #17	CLEC3B (ENSDARG00000076541) #18	cdcp1a (ENSDARG00000058943) #19	lars2 (ENSDARG00000075337) #21	ENSDARG00000110954 #22	cyb5r4 (ENSDARG00000020898)	csf3r (ENSDARG00000045959)	ENSDARG00000003197	GRIK3 (ENSDARG00000077715)	ZC3H12A (ENSDARG00000005271)	ENSDARG00000095831	ENSDARG00000091817	INPP5B (ENSDARG00000103683)	mtf1 (ENSDARG00000102898)	yrdc (ENSDARG00000041428)	rrp15 (ENSDARG00000013478) #10	vegfaa (ENSDARG00000103542) #8	ttc29 (ENSDARG00000058885)	ppp1r8b (ENSDARG00000022430)	tfpt (ENSDARG00000089572)
Euteleosteomorpha	ANCESTRAL SPECIES	58	ENSGT00940000158416.q.a #7	ENSGT00940000157284.cb.a #8	ENSGT00390000008751.a.fb #9	ENSGT00390000001960 #10	ENSGT00940000157390 #11	ENSGT00940000159171 #12	ENSGT00390000018031 #13	ENSGT00940000156549.a.a #14	ENSGT00940000153634.b.a #15	ENSGT00950000182834.B #16	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00940000155579.a	ENSGT00940000155873	ENSGT00500000044921.b	ENSGT00500000044921.a	ENSGT00940000157845	ENSGT00940000159017.a.a	ENSGT00940000162584.j	ENSGT00940000159017.a.b	ENSGT00500000045044	ENSGT00390000018500.b.b.b	ENSGT00390000013823.a	ENSGT00950000182908.C.a	ENSGT00950000182856.a.a.a	ENSGT00940000161409	ENSGT00940000163428.b.b
Acanthomorphata	ANCESTRAL SPECIES	31	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22
Cod	MODERN SPECIES	19	pigv (ENSGMOG00000001161)	ARID1A (ENSGMOG00000001024)	gpn2 (ENSGMOG00000001010)	GPATCH3 (ENSGMOG00000000991)	nr0b2a (ENSGMOG00000000984)	ENSGMOG00000024982	tpbgl (ENSGMOG00000026520)	tmem222a (ENSGMOG00000000961)	wdtc1 (ENSGMOG00000000939)	ENSGMOG00000000903	ENSGMOG00000000889	ENSGMOG00000000872 #17	CLEC3B (ENSGMOG00000000871) #18	cdcp1a (ENSGMOG00000036986) #19	lars2 (ENSGMOG00000000795) #21	LIMD1 (ENSGMOG00000029782) #22	ENSGMOG00000018220	ENSGMOG00000014462	ENSGMOG00000007215	ENSGMOG00000035024	ENSGMOG00000023957	ENSGMOG00000018290	ENSGMOG00000018314	ENSGMOG00000032215	ENSGMOG00000018415	ENSGMOG00000035277	ENSGMOG00000018435	ENSGMOG00000025371	ENSGMOG00000035907	ENSGMOG00000010934	ENSGMOG00000037039
Euacanthomorphacea	ANCESTRAL SPECIES		ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b
Pinecone sodierfish	MODERN SPECIES	7	zdhhc18a (ENSMMDG00005015039)	pigv (ENSMMDG00005015036)	ARID1A (ENSMMDG00005014527)	gpn2 (ENSMMDG00005014502)	nr0b2a (ENSMMDG00005014497)	tpbgl (ENSMMDG00005014485)	tmem222a (ENSMMDG00005014430)	wdtc1 (ENSMMDG00005014107)	CEP85 (ENSMMDG00005014101)	ENSMMDG00005014099	ENSMMDG00005014097	ENSMMDG00005014095 #17	CLEC3B (ENSMMDG00005014092) #18	cdcp1a (ENSMMDG00005014089) #19	lars2 (ENSMMDG00005010819) #21	LIMD1 (ENSMMDG00005010776) #22	deptor (ENSMMDG00005010773)	ENSMMDG00005010769	ENSMMDG00005010764	mrpl13 (ENSMMDG00005010739)	dscc1 (ENSMMDG00005010728)	CPQ (ENSMMDG00005010507)	ENSMMDG00005010496	MRS2 (ENSMMDG00005010421)	ENSMMDG00005010419	ENSMMDG00005010416	ttk (ENSMMDG00005010396)	bckdhb (ENSMMDG00005009944)	TENT5A (ENSMMDG00005009936)	IBTK (ENSMMDG00005009868)	tpbgb (ENSMMDG00005009852)
Percomorphaceae	ANCESTRAL SPECIES		ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b
Tiger tail seahorse	MODERN SPECIES	208	sntb1 (ENSHCOG00000011459)	ENSHCOG00000011582	ENSHCOG00000011612	ENSHCOG00000011623	ndrg1b (ENSHCOG00000011633)	ENSHCOG00000011686	ENSHCOG00000011697	CLPTM1L (ENSHCOG00000000747)	ENSHCOG00000011769	MRS2 (ENSHCOG00000011796)	ENSHCOG00000011808	ENSHCOG00000011825 #17	CLEC3B (ENSHCOG00000011832) #18	cdcp1a (ENSHCOG00000011848) #19	lars2 (ENSHCOG00000011897) #21	LIMD1 (ENSHCOG00000011905) #22	deptor (ENSHCOG00000011939)	COL14A1 (ENSHCOG00000012016)	mrpl13 (ENSHCOG00000012037)	dscc1 (ENSHCOG00000012057)	CPQ (ENSHCOG00000012071)	ENSHCOG00000012084	ANKRD28 (ENSHCOG00000012141)	hdac9b (ENSHCOG00000012189)	twist1b (ENSHCOG00000012208)	macc1 (ENSHCOG00000012219)	sp8b (ENSHCOG00000012237)	DNAH11 (ENSHCOG00000012354)	ENSHCOG00000012394	ENSHCOG00000012412	slc6a19b (ENSHCOG00000012438)
Percomorphaceae_B	ANCESTRAL SPECIES	1	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00940000178119	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b
Ovalentaria	ANCESTRAL SPECIES	3	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00940000178119	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b
Ovalentaria_B	ANCESTRAL SPECIES	1	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00940000178119	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b
Cichlidae	ANCESTRAL SPECIES	26	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	2	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b.c #19	ENSGT00390000010209.c.b.d #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b
Nile tilapia	MODERN SPECIES	2	gpatch3 (ENSONIG00000006771)	nr0b2 (ENSONIG00000031748)	ENSONIG00000006773	tpbgl (ENSONIG00000006775)	tmem222a (ENSONIG00000006776)	wdtc1 (ENSONIG00000006780)	CEP85 (ENSONIG00000006789)	ENSONIG00000006793	ENSONIG00000006796 #17	CLEC3B (ENSONIG00000028365) #18	cdcp1a (ENSONIG00000006800) #19	ENSONIG00000042157 #19	ENSONIG00000030470	TMEM158 (ENSONIG00000041619) #20	lars2 (ENSONIG00000006802) #21	LIMD1 (ENSONIG00000035860) #22	deptor (ENSONIG00000006812)	COL14A1 (ENSONIG00000006815)	mrpl13 (ENSONIG00000037652)	dscc1 (ENSONIG00000006827)	CPQ (ENSONIG00000006829)	ENSONIG00000032537	MRS2 (ENSONIG00000006832)	ENSONIG00000006834	ENSONIG00000039329	ENSONIG00000006838	ndrg1b (ENSONIG00000006850)	PTP4A3 (ENSONIG00000006856)	ENSONIG00000007011	ENSONIG00000007013	sntb1 (ENSONIG00000007016)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	1	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b.c #19	ENSGT00390000010209.c.b.d #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b
Lyretail cichlid	MODERN SPECIES	331	pigv (ENSNBRG00000000491)	ARID1A (ENSNBRG00000000408)	gpn2 (ENSNBRG00000000384)	gpatch3 (ENSNBRG00000000365)	nr0b2a (ENSNBRG00000022432)	ENSNBRG00000022395	tpbgl (ENSNBRG00000022364)	tmem222a (ENSNBRG00000022351)	wdtc1 (ENSNBRG00000022328)	CEP85 (ENSNBRG00000022276)	ENSNBRG00000022249	ENSNBRG00000022232 #17	cdcp1a (ENSNBRG00000022216) #19	TMEM158 (ENSNBRG00000022207) #20	lars2 (ENSNBRG00000022165) #21	LIMD1 (ENSNBRG00000022129) #22	deptor (ENSNBRG00000022094)	COL14A1 (ENSNBRG00000022015)	mrpl13 (ENSNBRG00000021965)	dscc1 (ENSNBRG00000021943)	CPQ (ENSNBRG00000021915)	ENSNBRG00000021901	MRS2 (ENSNBRG00000021882)	ENSNBRG00000021124	ENSNBRG00000020979	ENSNBRG00000020964	ENSNBRG00000020942	ndrg1b (ENSNBRG00000020757)	PTP4A3 (ENSNBRG00000020695)	ENSNBRG00000020616	ENSNBRG00000020565
Haplochromini	ANCESTRAL SPECIES	24	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b.c #19	ENSGT00390000010209.c.b.d #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b
Burton s mouthbrooder	MODERN SPECIES	446														TMEM158 (ENSHBUG00000014093) #20	lars2 (ENSHBUG00000014070) #21	LIMD1 (ENSHBUG00000013922) #22	deptor (ENSHBUG00000013888)	ENSHBUG00000013873	COL14A1 (ENSHBUG00000013799)	mrpl13 (ENSHBUG00000012259)	dscc1 (ENSHBUG00000012228)	CPQ (ENSHBUG00000012198)	ENSHBUG00000012167	MRS2 (ENSHBUG00000012163)	ENSHBUG00000012151	ENSHBUG00000012140	ENSHBUG00000012132	ndrg1b (ENSHBUG00000012032)	PTP4A3 (ENSHBUG00000011967)	ENSHBUG00000011937	ENSHBUG00000011919
Haplochromini_A	ANCESTRAL SPECIES	30	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b.c #19	ENSGT00390000010209.c.b.d #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b
Haplochromini_B	ANCESTRAL SPECIES	50	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g.c	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b.c #19	ENSGT00390000010209.c.b.d.a #19	ENSGT00390000010209.c.b.d.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b
Eastern happy	MODERN SPECIES	2	gpn2 (ENSACLG00000012793)	gpatch3 (ENSACLG00000012807)	nr0b2a (ENSACLG00000012820)	ENSACLG00000012826	tpbgl (ENSACLG00000012831)	tmem222a (ENSACLG00000012836)	wdtc1 (ENSACLG00000012911)	CEP85 (ENSACLG00000012930)	ENSACLG00000012962	ENSACLG00000012980 #17	CLEC3B (ENSACLG00000013006) #18	cdcp1a (ENSACLG00000013008) #19	ENSACLG00000013023 #19	TMEM158 (ENSACLG00000013026) #20	lars2 (ENSACLG00000013037) #21	LIMD1 (ENSACLG00000013073) #22	deptor (ENSACLG00000013080)	COL14A1 (ENSACLG00000013132)	mrpl13 (ENSACLG00000013200)	dscc1 (ENSACLG00000013216)	CPQ (ENSACLG00000013235)	ENSACLG00000013261	MRS2 (ENSACLG00000013272)	ENSACLG00000013288	ENSACLG00000013307	ENSACLG00000013321	ENSACLG00000013325	ndrg1b (ENSACLG00000013370)	PTP4A3 (ENSACLG00000013391)	ENSACLG00000013397	ENSACLG00000013413
Zebra mbuna	MODERN SPECIES	158												ENSMZEG00005013554	ENSMZEG00005013567 #19	TMEM158 (ENSMZEG00005013573) #20	lars2 (ENSMZEG00005013585) #21	LIMD1 (ENSMZEG00005013612) #22	deptor (ENSMZEG00005013618)
P. nyererei	MODERN SPECIES	439	pigv (ENSPNYG00000005224)	ARID1A (ENSPNYG00000005199)	gpn2 (ENSPNYG00000005186)	gpatch3 (ENSPNYG00000005172)	nr0b2a (ENSPNYG00000005164)	tpbgl (ENSPNYG00000005135)	tmem222a (ENSPNYG00000005103)	wdtc1 (ENSPNYG00000005049)	CEP85 (ENSPNYG00000005034)	ENSPNYG00000005002	ENSPNYG00000004967 #17	CLEC3B (ENSPNYG00000004958) #18	cdcp1a (ENSPNYG00000004940) #19	TMEM158 (ENSPNYG00000004927) #20	lars2 (ENSPNYG00000004846) #21	LIMD1 (ENSPNYG00000004825) #22	deptor (ENSPNYG00000004816)	COL14A1 (ENSPNYG00000004711)	mrpl13 (ENSPNYG00000004669)	dscc1 (ENSPNYG00000004640)	CPQ (ENSPNYG00000004611)	ENSPNYG00000004600	MRS2 (ENSPNYG00000004586)	ENSPNYG00000004453	ENSPNYG00000004426	ENSPNYG00000004359	ENSPNYG00000004202	ndrg1b (ENSPNYG00000003846)	PTP4A3 (ENSPNYG00000003759)	ENSPNYG00000003441	ENSPNYG00000003339
Midas cichlid	MODERN SPECIES	1213	pigv (ENSACIG00000010361)	ARID1A (ENSACIG00000010374)	gpn2 (ENSACIG00000010469)	nr0b2a (ENSACIG00000010554)	ENSACIG00000010575	tpbgl (ENSACIG00000010582)	tmem222a (ENSACIG00000010606)	wdtc1 (ENSACIG00000010658)	CEP85 (ENSACIG00000010703)	ENSACIG00000010779	ENSACIG00000010812 #17	CLEC3B (ENSACIG00000010837) #18	cdcp1a (ENSACIG00000010859) #19	TMEM158 (ENSACIG00000010880) #20	lars2 (ENSACIG00000010901) #21	LIMD1 (ENSACIG00000010949) #22	deptor (ENSACIG00000011002)	COL14A1 (ENSACIG00000011027)	mrpl13 (ENSACIG00000011101)	dscc1 (ENSACIG00000011121)	CPQ (ENSACIG00000011136)	ENSACIG00000011156	MRS2 (ENSACIG00000011167)	ENSACIG00000011184	ENSACIG00000011214	ENSACIG00000011223	ndrg1b (ENSACIG00000011308)	PTP4A3 (ENSACIG00000011864)	ZFAT (ENSACIG00000011878)	ENSACIG00000012032	sntb1 (ENSACIG00000012120)
Pomacentridae	ANCESTRAL SPECIES	18	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00940000178119	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000003209	ENSGT00940000157046.C	ENSGT00550000075103	ENSGT00940000163876	ENSGT00950000183116.b.a.b.b	ENSGT00940000157045.a	ENSGT00940000174712	ENSGT01080000257333.E	ENSGT01030000234909
Pomacentridae_A	ANCESTRAL SPECIES	5	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000003209	ENSGT00940000157046.C	ENSGT00550000075103	ENSGT00940000163876	ENSGT00950000183116.b.a.b.b	ENSGT00940000157045.a	ENSGT00940000174712	ENSGT01080000257333.E	ENSGT01030000234909
Amphiprion	ANCESTRAL SPECIES	1	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000003209	ENSGT01100000263520.a.a.b.a.b	ENSGT00550000075103	ENSGT00940000163876	ENSGT00940000157045.a	ENSGT00950000183116.b.a.b.b	ENSGT00940000174712	ENSGT01080000257333.E	ENSGT01030000234909
Orange clownfish	MODERN SPECIES	21	pigv (ENSAPEG00000018791)	ARID1A (ENSAPEG00000018815)	gpn2 (ENSAPEG00000018912)	gpatch3 (ENSAPEG00000018926)	nr0b2a (ENSAPEG00000018934)	KDF1 (ENSAPEG00000018942)	tpbgl (ENSAPEG00000018953)	tmem222a (ENSAPEG00000018960)	wdtc1 (ENSAPEG00000019007)	CEP85 (ENSAPEG00000019107)	ENSAPEG00000019122	FEZ2 (ENSAPEG00000019155) #17	CLEC3B (ENSAPEG00000019207) #18	cdcp1a (ENSAPEG00000019254) #19	lars2 (ENSAPEG00000019312) #21	LIMD1 (ENSAPEG00000019388) #22	deptor (ENSAPEG00000019438)	COL14A1 (ENSAPEG00000019501)	mrpl13 (ENSAPEG00000019583)	dscc1 (ENSAPEG00000019612)	CPQ (ENSAPEG00000019655)	ENSAPEG00000019705	rpp25l (ENSAPEG00000019714)	tmem116 (ENSAPEG00000019727)	ENSAPEG00000019755	mrps12 (ENSAPEG00000019785)	zgc:153896 (ENSAPEG00000019798)	ENSAPEG00000019835	ENSAPEG00000019932	ENSAPEG00000019997	ENSAPEG00000020009
Clown anemonefish	MODERN SPECIES	1388	pigv (ENSAOCG00000019469)	ARID1A (ENSAOCG00000019453)	gpn2 (ENSAOCG00000019361)	gpatch3 (ENSAOCG00000019352)	nr0b2a (ENSAOCG00000019342)	KDF1 (ENSAOCG00000019334)	tpbgl (ENSAOCG00000001397)	tmem222a (ENSAOCG00000002414)	wdtc1 (ENSAOCG00000001383)	CEP85 (ENSAOCG00000019205)	ENSAOCG00000019169	FEZ2 (ENSAOCG00000019077) #17	CLEC3B (ENSAOCG00000002318) #18	cdcp1a (ENSAOCG00000018983) #19	lars2 (ENSAOCG00000018907) #21	LIMD1 (ENSAOCG00000018829) #22	deptor (ENSAOCG00000018807)
Spiny chromis	MODERN SPECIES	185														cdcp1a (ENSAPOG00000004677) #19	lars2 (ENSAPOG00000004760) #21	LIMD1 (ENSAPOG00000004799) #22	deptor (ENSAPOG00000004815)	COL14A1 (ENSAPOG00000004866)	mrpl13 (ENSAPOG00000004881)	dscc1 (ENSAPOG00000004927)	CPQ (ENSAPOG00000004950)	ENSAPOG00000004960	tmem116 (ENSAPOG00000004988)	ENSAPOG00000004997	ENSAPOG00000005016	ENSAPOG00000005023	mrps12 (ENSAPOG00000005047)	zgc:153896 (ENSAPOG00000005062)	ENSAPOG00000005092	RPL35 (ENSAPOG00000005108)	ENSAPOG00000005188
Bicolor damselfish	MODERN SPECIES	1018														lars2 (ENSSPAG00000022504) #21	ENSSPAG00000022518	ENSSPAG00000022528 #22	deptor (ENSSPAG00000022529)	COL14A1 (ENSSPAG00000022531)
Atherinomorphae	ANCESTRAL SPECIES		ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00940000178119	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b
Oryzias	DUPLICATION
Oryzias	ANCESTRAL SPECIES																	ENSGT00940000159019.k #22
Oryzias_a	ANCESTRAL SPECIES																	ENSGT00940000159019.k #22
Chinese medaka	MODERN SPECIES	205	CARMIL1 (ENSOSIG00000022255)	sntb1 (ENSOSIG00000022289)	ENSOSIG00000022290	ENSOSIG00000022296	ENSOSIG00000022299	ENSOSIG00000022306	ndrg1b (ENSOSIG00000022331)	ENSOSIG00000022432	CLPTM1L (ENSOSIG00000022706)	MRS2 (ENSOSIG00000022719)	ENSOSIG00000022720	CPQ (ENSOSIG00000022731)	dscc1 (ENSOSIG00000022753)	mrpl13 (ENSOSIG00000022757)	COL14A1 (ENSOSIG00000022839)	ENSOSIG00000022884 #22	deptor (ENSOSIG00000022887)
Oryzias	ANCESTRAL SPECIES	2	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019.l #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b	ENSGT00940000159963
Oryzias_b	ANCESTRAL SPECIES	1	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019.l #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b	ENSGT00940000159963
Javanese ricefish	MODERN SPECIES	7	zdhhc18a (ENSOJAG00000018158)	pigv (ENSOJAG00000018177)	gpn2 (ENSOJAG00000018270)	gpatch3 (ENSOJAG00000018279)	nr0b2a (ENSOJAG00000018286)	ENSOJAG00000018298	tpbgl (ENSOJAG00000018305)	tmem222a (ENSOJAG00000018312)	wdtc1 (ENSOJAG00000018357)	CEP85 (ENSOJAG00000018845)	ENSOJAG00000018856	ENSOJAG00000018868 #17	CLEC3B (ENSOJAG00000018912) #18	TMEM158 (ENSOJAG00000018976) #20	lars2 (ENSOJAG00000019013) #21	LIMD1 (ENSOJAG00000007396) #22	deptor (ENSOJAG00000007415)	COL14A1 (ENSOJAG00000007654)	mrpl13 (ENSOJAG00000009285)	dscc1 (ENSOJAG00000009392)	CPQ (ENSOJAG00000009529)	ENSOJAG00000009966	MRS2 (ENSOJAG00000009982)	ENSOJAG00000010177	ENSOJAG00000010756	ndrg1b (ENSOJAG00000015527)	ENSOJAG00000015809	ENSOJAG00000015824	ENSOJAG00000015971	sntb1 (ENSOJAG00000015985)	CCN3 (ENSOJAG00000016093)
Indian medaka	MODERN SPECIES	5	ARID1A (ENSOMEG00000010910)	gpn2 (ENSOMEG00000010953)	gpatch3 (ENSOMEG00000010991)	nr0b2a (ENSOMEG00000011004)	ENSOMEG00000011011	tpbgl (ENSOMEG00000011052)	tmem222a (ENSOMEG00000011094)	wdtc1 (ENSOMEG00000011235)	ENSOMEG00000011310	CEP85 (ENSOMEG00000011339)	ENSOMEG00000011378 #17	ENSOMEG00000011391	CLEC3B (ENSOMEG00000011407) #18	TMEM158 (ENSOMEG00000011417) #20	lars2 (ENSOMEG00000011491) #21	LIMD1 (ENSOMEG00000011521) #22	deptor (ENSOMEG00000011556)	COL14A1 (ENSOMEG00000011696)	mrpl13 (ENSOMEG00000011732)	dscc1 (ENSOMEG00000011757)	ENSOMEG00000011783	ENSOMEG00000011802	MRS2 (ENSOMEG00000011853)	ENSOMEG00000011904	ENSOMEG00000012259	ndrg1b (ENSOMEG00000012420)	ENSOMEG00000012484	ENSOMEG00000012557	ENSOMEG00000012611	sntb1 (ENSOMEG00000012675)	CCN3 (ENSOMEG00000012898)
Oryzias_a	ANCESTRAL SPECIES	9	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019.l #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b	ENSGT00940000159963
Japanese Medaka HdrR	MODERN SPECIES	7	pigv (ENSORLG00000004385)	ARID1A (ENSORLG00000004410)	gpn2 (ENSORLG00000004425)	gpatch3 (ENSORLG00000004435)	ENSORLG00000025251	nr0b2a (ENSORLG00000004442)	tpbgl (ENSORLG00000004455)	tmem222a (ENSORLG00000004480)	wdtc1 (ENSORLG00000004505)	CEP85 (ENSORLG00000004532)	ENSORLG00000004544 #17	CLEC3B (ENSORLG00000028179) #18	TMEM158 (ENSORLG00000004555) #20	ENSORLG00000023875	lars2 (ENSORLG00000004574) #21	LIMD1 (ENSORLG00000004582) #22	deptor (ENSORLG00000004604)	ENSORLG00000004631	mrpl13 (ENSORLG00000004647)	dscc1 (ENSORLG00000004660)	CPQ (ENSORLG00000004684)	ENSORLG00000024891	MRS2 (ENSORLG00000004699)	CLPTM1L (ENSORLG00000004721)	ENSORLG00000004751	ENSORLG00000004785	ENSORLG00000004793	ENSORLG00000004805	ENSORLG00000004821	sntb1 (ENSORLG00000022473)	ENSORLG00000025100
Chinese medaka	MODERN SPECIES	36	ENSOSIG00000000406	tent5ba (ENSOSIG00000000401)	zdhhc18a (ENSOSIG00000000395)	pigv (ENSOSIG00000000393)	ARID1A (ENSOSIG00000000383)	ENSOSIG00000000377	gpatch3 (ENSOSIG00000000376)	nr0b2a (ENSOSIG00000000375)	ENSOSIG00000000374	tpbgl (ENSOSIG00000000371)	tmem222a (ENSOSIG00000000368)	CEP85 (ENSOSIG00000000360)	CLEC3B (ENSOSIG00000000357) #18	TMEM158 (ENSOSIG00000000355) #20	lars2 (ENSOSIG00000000257) #21	ENSOSIG00000000229 #22
Cyprinodontiformes	ANCESTRAL SPECIES		ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00940000178119	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b
Aplocheiloidei	ANCESTRAL SPECIES	83	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667
Mangrove rivulus	MODERN SPECIES	402	pigv (ENSKMAG00000020611)	ARID1A (ENSKMAG00000020627)	gpn2 (ENSKMAG00000020696)	gpatch3 (ENSKMAG00000020717)	nr0b2a (ENSKMAG00000020730)	ENSKMAG00000020738	tpbgl (ENSKMAG00000020751)	tmem222a (ENSKMAG00000020767)	wdtc1 (ENSKMAG00000020782)	CEP85 (ENSKMAG00000020811)	ENSKMAG00000020836	ENSKMAG00000020849 #17	CLEC3B (ENSKMAG00000020857) #18	TMEM158 (ENSKMAG00000020865) #20	lars2 (ENSKMAG00000020875) #21	LIMD1 (ENSKMAG00000020912) #22	deptor (ENSKMAG00000020928)
Turquoise killifish	MODERN SPECIES	29								wdtc1 (ENSNFUG00015021980)	CEP85 (ENSNFUG00015022060)	ENSNFUG00015022071	ENSNFUG00015022074 #17	CLEC3BA (ENSNFUG00015022077) #18	cdcp1a (ENSNFUG00015022084) #19	TMEM158 (ENSNFUG00015022097) #20	LARS2 (ENSNFUG00015022107) #21	LIMD1 (ENSNFUG00015014106) #22	deptor (ENSNFUG00015014220)	ENSNFUG00015014259	COX20 (ENSNFUG00015014283)
Cyprinodontoidei	ANCESTRAL SPECIES		ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00940000178119	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b
NAME_4	ANCESTRAL SPECIES	86	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b
Sheepshead minnow	MODERN SPECIES	333	pigv (ENSCVAG00000020161)	ARID1A (ENSCVAG00000020151)	gpn2 (ENSCVAG00000020134)	gpatch3 (ENSCVAG00000000827)	nr0b2a (ENSCVAG00000020110)	KDF1 (ENSCVAG00000020102)	tpbgl (ENSCVAG00000020093)	tmem222a (ENSCVAG00000020041)	wdtc1 (ENSCVAG00000020036)	CEP85 (ENSCVAG00000019986)	ENSCVAG00000019975	ENSCVAG00000019948 #17	CLEC3B (ENSCVAG00000019917) #18	TMEM158 (ENSCVAG00000019910) #20	lars2 (ENSCVAG00000019899) #21	LIMD1 (ENSCVAG00000019769) #22	deptor (ENSCVAG00000019760)	COL14A1 (ENSCVAG00000019722)	mrpl13 (ENSCVAG00000019608)	dscc1 (ENSCVAG00000019580)	CPQ (ENSCVAG00000019539)	ENSCVAG00000019505	MRS2 (ENSCVAG00000019496)	ENSCVAG00000019489	ENSCVAG00000019448	ENSCVAG00000019438	ndrg1b (ENSCVAG00000019353)	PTP4A3 (ENSCVAG00000019341)	ENSCVAG00000019277	ENSCVAG00000019256	sntb1 (ENSCVAG00000019231)
Mummichog	MODERN SPECIES	468													ENSFHEG00000001792 #19	TMEM158 (ENSFHEG00000001795) #20	lars2 (ENSFHEG00000001812) #21	LIMD1 (ENSFHEG00000001824) #22	deptor (ENSFHEG00000001836)	ENSFHEG00000001839	COL14A1 (ENSFHEG00000001891)	mrpl13 (ENSFHEG00000001907)	dscc1 (ENSFHEG00000001923)	CPQ (ENSFHEG00000001941)	ENSFHEG00000001945
Poeciliinae	ANCESTRAL SPECIES	22	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00940000178119	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667.j	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b
Platyfish	MODERN SPECIES	17	pigv (ENSXMAG00000010711)	ARID1A (ENSXMAG00000010716)	gpn2 (ENSXMAG00000010742)	gpatch3 (ENSXMAG00000010749)	nr0b2a (ENSXMAG00000010556)	ENSXMAG00000023100	tpbgl (ENSXMAG00000019082)	tmem222a (ENSXMAG00000028549)	wdtc1 (ENSXMAG00000010763)	CEP85 (ENSXMAG00000010776)	ENSXMAG00000023555	ENSXMAG00000010800 #17	CLEC3B (ENSXMAG00000010802) #18	TMEM158 (ENSXMAG00000022005) #20	lars2 (ENSXMAG00000010803) #21	LIMD1 (ENSXMAG00000010818) #22	deptor (ENSXMAG00000010825)	COL14A1 (ENSXMAG00000010834)	mrpl13 (ENSXMAG00000010846)	dscc1 (ENSXMAG00000010847)	CPQ (ENSXMAG00000010857)	ENSXMAG00000022167	MRS2 (ENSXMAG00000010869)	ENSXMAG00000030035	ENSXMAG00000010909	ENSXMAG00000010911	ndrg1b (ENSXMAG00000010969)	ENSXMAG00000018281	ENSXMAG00000010993	ENSXMAG00000010999	sntb1 (ENSXMAG00000011008)
Poecilia	ANCESTRAL SPECIES		ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00940000178119	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667.j	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b
Guppy	MODERN SPECIES	446	ARID1A (ENSPREG00000008684)	gpn2 (ENSPREG00000008794)	gpatch3 (ENSPREG00000008873)	nr0b2a (ENSPREG00000008891)	ENSPREG00000008900	tpbgl (ENSPREG00000008925)	tmem222a (ENSPREG00000008949)	wdtc1 (ENSPREG00000008983)	CEP85 (ENSPREG00000009036)	ENSPREG00000009137	ENSPREG00000009238 #17	CLEC3B (ENSPREG00000009257) #18	ENSPREG00000009288 #19	TMEM158 (ENSPREG00000009299) #20	lars2 (ENSPREG00000009319) #21	LIMD1 (ENSPREG00000009359) #22	deptor (ENSPREG00000009382)	COL14A1 (ENSPREG00000009434)	mrpl13 (ENSPREG00000009510)	dscc1 (ENSPREG00000009531)	CPQ (ENSPREG00000009554)	ENSPREG00000009583	MRS2 (ENSPREG00000009590)	ENSPREG00000009608	ENSPREG00000009684	ENSPREG00000009701	ndrg1b (ENSPREG00000009752)	ENSPREG00000009772	ZFAT (ENSPREG00000009790)	ENSPREG00000009877	sntb1 (ENSPREG00000009976)
NAME_6	ANCESTRAL SPECIES	197													ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667.j	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b
Sailfin molly	MODERN SPECIES	1169																ENSPLAG00000011660 #22	deptor (ENSPLAG00000011668)	COL14A1 (ENSPLAG00000011907)
Amazon molly	DUPLICATION
Amazon molly	MODERN SPECIES	641						ENSPFOG00000023328	ENSPFOG00000021960	ENSPFOG00000020681	ENSPFOG00000024153	ENSPFOG00000001141	ENSPFOG00000001188	ENSPFOG00000001169	ENSPFOG00000001239	CLEC3B (ENSPFOG00000001256) ##18	ENSPFOG00000001318 ##19	ENSPFOG00000024108 #22	nrm (ENSPFOG00000001420)	ENSPFOG00000001457	cratb (ENSPFOG00000001611)	ppt2b (ENSPFOG00000001936)	rps5 (ENSPFOG00000002010)	ddah2 (ENSPFOG00000002067)	clic1 (ENSPFOG00000002107)	ENSPFOG00000002158	ENSPFOG00000023435	ENSPFOG00000002164	ENSPFOG00000022167	CSNK2B (ENSPFOG00000002176)	prrc2a (ENSPFOG00000002230)	neu1 (ENSPFOG00000021747)	ENSPFOG00000002303
Amazon molly	MODERN SPECIES	523													ENSPFOG00000011877 #19	TMEM158 (ENSPFOG00000022083) #20	lars2 (ENSPFOG00000011593) #21	LIMD1 (ENSPFOG00000011498) #22	deptor (ENSPFOG00000011332)	deptor (ENSPFOG00000011294)	COL14A1 (ENSPFOG00000010698)	mrpl13 (ENSPFOG00000010630)	dscc1 (ENSPFOG00000010560)	CPQ (ENSPFOG00000010434)	ENSPFOG00000021703	ENSPFOG00000010425	MRS2 (ENSPFOG00000010268)	ENSPFOG00000010111	ENSPFOG00000010095	ENSPFOG00000010090	ndrg1b (ENSPFOG00000010083)	ENSPFOG00000010038	ENSPFOG00000009919
Percomorphaceae_C	ANCESTRAL SPECIES	2	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00940000178119	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b
Eupercaria	ANCESTRAL SPECIES	1	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00940000178119	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b
Tetraodontidae	ANCESTRAL SPECIES	14	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191.e	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00940000163454.a.b	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305
Fugu	MODERN SPECIES	19	gpn2 (ENSTRUG00000013346)	gpatch3 (ENSTRUG00000013294)	nr0b2a (ENSTRUG00000013270)	KDF1 (ENSTRUG00000013266)	ENSTRUG00000013261	tmem222a (ENSTRUG00000013224)	wdtc1 (ENSTRUG00000013148)	CEP85 (ENSTRUG00000013057)	ENSTRUG00000012968	ENSTRUG00000012819 #17	CLEC3B (ENSTRUG00000012771) #18	cdcp1a (ENSTRUG00000012734) #19	dnali1 (ENSTRUG00000012726)	TMEM158 (ENSTRUG00000023519) #20	lars2 (ENSTRUG00000012513) #21	LIMD1 (ENSTRUG00000025656) #22	deptor (ENSTRUG00000012469)	COL14A1 (ENSTRUG00000012345)	ENSTRUG00000020053	ENSTRUG00000030825	ENSTRUG00000012025	ENSTRUG00000011927	MRS2 (ENSTRUG00000011868)	ENSTRUG00000028405	ENSTRUG00000032169	ENSTRUG00000011167	ndrg1b (ENSTRUG00000010966)	PTP4A3 (ENSTRUG00000010904)	ENSTRUG00000010724	ENSTRUG00000010534	sntb1 (ENSTRUG00000010268)
Tetraodon	MODERN SPECIES	23	ARID1A (ENSTNIG00000009659)	gpn2 (ENSTNIG00000009658)	gpatch3 (ENSTNIG00000009657)	ENSTNIG00000009656	nr0b2a (ENSTNIG00000009655)	KDF1 (ENSTNIG00000009654)	tpbgl (ENSTNIG00000009653)	tmem222a (ENSTNIG00000009652)	wdtc1 (ENSTNIG00000009651)	ENSTNIG00000001431	CEP85 (ENSTNIG00000009650)	ENSTNIG00000009649 #17	CLEC3B (ENSTNIG00000009648) #18	cdcp1a (ENSTNIG00000001625) #19	lars2 (ENSTNIG00000009647) #21	LIMD1 (ENSTNIG00000009646) #22	deptor (ENSTNIG00000009645)	COL14A1 (ENSTNIG00000009644)	mrpl13 (ENSTNIG00000009643)	dscc1 (ENSTNIG00000009642)	ENSTNIG00000009641	CPQ (ENSTNIG00000009640)	ENSTNIG00000009639	MRS2 (ENSTNIG00000009638)	CLPTM1L (ENSTNIG00000009637)	ENSTNIG00000009636	ndrg1b (ENSTNIG00000009635)	ENSTNIG00000009634	ENSTNIG00000009633	ENSTNIG00000009632	sntb1 (ENSTNIG00000009631)
Eupecaria_A	ANCESTRAL SPECIES	2	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00940000178119	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b
Ballan wrasse	MODERN SPECIES	320	pigv (ENSLBEG00000007204)	ARID1A (ENSLBEG00000007086)	gpn2 (ENSLBEG00000007059)	gpatch3 (ENSLBEG00000007046)	nr0b2a (ENSLBEG00000007031)	ENSLBEG00000007012	tpbgl (ENSLBEG00000007001)	tmem222a (ENSLBEG00000006974)	wdtc1 (ENSLBEG00000006897)	CEP85 (ENSLBEG00000006860)	ENSLBEG00000006805	ENSLBEG00000006748 #17	CLEC3B (ENSLBEG00000006726) #18	cdcp1a (ENSLBEG00000006669) #19	lars2 (ENSLBEG00000006552) #21	LIMD1 (ENSLBEG00000006501) #22	deptor (ENSLBEG00000006472)	dscc1 (ENSLBEG00000006380)	mrpl13 (ENSLBEG00000006340)	COL14A1 (ENSLBEG00000006199)
Eupecaria_B	ANCESTRAL SPECIES	4	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00940000178119	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b
Eupecaria_C	ANCESTRAL SPECIES	2	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b
Gilthead seabream	MODERN SPECIES	8	ARID1A (ENSSAUG00010014457)	gpn2 (ENSSAUG00010014447)	gpatch3 (ENSSAUG00010014445)	nr0b2a (ENSSAUG00010014444)	KDF1 (ENSSAUG00010014441)	tpbgl (ENSSAUG00010014440)	tmem222a (ENSSAUG00010014436)	wdtc1 (ENSSAUG00010014359)	CEP85 (ENSSAUG00010014340)	ENSSAUG00010014337	ENSSAUG00010014333 #17	CLEC3B (ENSSAUG00010014331) #18	cdcp1a (ENSSAUG00010014327) #19	TMEM158 (ENSSAUG00010014322) #20	lars2 (ENSSAUG00010013465) #21	LIMD1 (ENSSAUG00010013425) #22	ENSSAUG00010013421	deptor (ENSSAUG00010013418)	COL14A1 (ENSSAUG00010012438)	mrpl13 (ENSSAUG00010012398)	dscc1 (ENSSAUG00010012389)	ENSSAUG00010012385	CPQ (ENSSAUG00010012241)	ENSSAUG00010012233	ENSSAUG00010012230	MRS2 (ENSSAUG00010012223)	CLPTM1L (ENSSAUG00010012217)	ENSSAUG00010012215	ENSSAUG00010003078	ENSSAUG00010001903	PTP4A3 (ENSSAUG00010001830)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	2	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b
European seabass	MODERN SPECIES	6	zdhhc18a (ENSDLAG00005032044)	pigv (ENSDLAG00005018164)	ARID1A (ENSDLAG00005018183)	gpn2 (ENSDLAG00005018430)	ENSDLAG00005018442	nr0b2a (ENSDLAG00005018436)	tpbgl (ENSDLAG00005018444)	tmem222a (ENSDLAG00005032304)	wdtc1 (ENSDLAG00005004338)	ENSDLAG00005004594	ENSDLAG00005004677	ENSDLAG00005034322 #17	cdcp1a (ENSDLAG00005004860) #19	TMEM158 (ENSDLAG00005004876) #20	lars2 (ENSDLAG00005004900) #21	LIMD1 (ENSDLAG00005005511) #22	deptor (ENSDLAG00005005578)	ENSDLAG00005002727	ENSDLAG00005015521	ENSDLAG00005005702	mrpl13 (ENSDLAG00005008859)	ENSDLAG00005008929	ENSDLAG00005008944	ENSDLAG00005033849	ENSDLAG00005008960	ENSDLAG00005008837	ENSDLAG00005009003	ENSDLAG00005029429	ENSDLAG00005009094	ENSDLAG00005010051	ENSDLAG00005010647
Large yellow croaker	MODERN SPECIES	484	ARID1A (ENSLCRG00005017266)	gpn2 (ENSLCRG00005017290)	gpatch3 (ENSLCRG00005017294)	nr0b2a (ENSLCRG00005017297)	ENSLCRG00005002912	tpbgl (ENSLCRG00005002945)	tmem222a (ENSLCRG00005002967)	CEP85 (ENSLCRG00005003005)	wdtc1 (ENSLCRG00005003097)	ENSLCRG00005003205	ENSLCRG00005003235 #17	CLEC3B (ENSLCRG00005003283) #18	cdcp1a (ENSLCRG00005003299) #19	TMEM158 (ENSLCRG00005003309) #20	lars2 (ENSLCRG00005003551) #21	LIMD1 (ENSLCRG00005006444) #22	deptor (ENSLCRG00005006448)	COL14A1 (ENSLCRG00005006535)	mrpl13 (ENSLCRG00005006813)	dscc1 (ENSLCRG00005006815)	CPQ (ENSLCRG00005006832)	ENSLCRG00005006902	MRS2 (ENSLCRG00005006915)	CLPTM1L (ENSLCRG00005006921)	ENSLCRG00005006925	ENSLCRG00005007690	ENSLCRG00005016333	ENSLCRG00005016375	ENSLCRG00005016397	sntb1 (ENSLCRG00005016459)	ENSLCRG00005016465
Perciformes	ANCESTRAL SPECIES	3	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00940000178119	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b
Cottioidei	ANCESTRAL SPECIES	7	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b
Lumpfish	DUPLICATION
Lumpfish	MODERN SPECIES	2	ENSCLMG00005014509	ADGRB1 (ENSCLMG00005014489)	HERPUD2 (ENSCLMG00005014485)	SLC4A7 (ENSCLMG00005014484)	eomesa (ENSCLMG00005014481)	ENSCLMG00005014461	ENSCLMG00005014452	TGFBR2 (ENSCLMG00005014450)	STT3B (ENSCLMG00005014434)	OSBPL10 (ENSCLMG00005014259)	TMEM42 (ENSCLMG00005014255)	zdhhc3b (ENSCLMG00005014252)	exosc7 (ENSCLMG00005014251)	CLEC3B (ENSCLMG00005014249) ##18	CDCP1 (ENSCLMG00005014246) ##19	ENSCLMG00005014245 #22	nrm (ENSCLMG00005014244)	ENSCLMG00005014243	cratb (ENSCLMG00005012585)	ppt2b (ENSCLMG00005012558)	rps5 (ENSCLMG00005012523)	ddah2 (ENSCLMG00005012522)	ENSCLMG00005012521	ENSCLMG00005012520	clic1 (ENSCLMG00005012518)	ENSCLMG00005012516	ENSCLMG00005012514	ENSCLMG00005012512	ENSCLMG00005012509	CSNK2B (ENSCLMG00005012499)	prrc2a (ENSCLMG00005012495)
Lumpfish	MODERN SPECIES	7	ARID1A (ENSCLMG00005009756)	gpn2 (ENSCLMG00005009752)	gpatch3 (ENSCLMG00005009750)	nr0b2a (ENSCLMG00005009749)	ENSCLMG00005009748	tpbgl (ENSCLMG00005009747)	tmem222a (ENSCLMG00005009686)	wdtc1 (ENSCLMG00005009534)	CEP85 (ENSCLMG00005009527)	ENSCLMG00005009524	FEZ2 (ENSCLMG00005009521) #17	CLEC3B (ENSCLMG00005009520) #18	cdcp1a (ENSCLMG00005009519) #19	TMEM158 (ENSCLMG00005009517) #20	lars2 (ENSCLMG00005008393) #21	LIMD1 (ENSCLMG00005008373) #22	deptor (ENSCLMG00005008372)	COL14A1 (ENSCLMG00005008363)	mrpl13 (ENSCLMG00005008358)	dscc1 (ENSCLMG00005008357)	CPQ (ENSCLMG00005007559)	ENSCLMG00005007546	MRS2 (ENSCLMG00005007298)	scgn (ENSCLMG00005007294)	CCN3 (ENSCLMG00005007266)	ENSCLMG00005007260	sntb1 (ENSCLMG00005007258)	ENSCLMG00005007036	ENSCLMG00005006966	ENSCLMG00005006960	ENSCLMG00005006698
Stickleback	DUPLICATION
Stickleback	MODERN SPECIES	9	HERPUD2 (ENSGACG00000003183)	SLC4A7 (ENSGACG00000003175)	eomesa (ENSGACG00000003160)	ENSGACG00000003159	ENSGACG00000003155	TGFBR2 (ENSGACG00000003140)	STT3B (ENSGACG00000003131)	OSBPL10 (ENSGACG00000003120)	TMEM42 (ENSGACG00000003118)	ENSGACG00000003115	zdhhc3b (ENSGACG00000003109)	exosc7 (ENSGACG00000003085)	CLEC3B (ENSGACG00000003083) ##18	ENSGACG00000003078 ##19	ENSGACG00000003074 ##19	ENSGACG00000003072 #22	tpmt.1 (ENSGACG00000003061)	ENSGACG00000003058	sdc2 (ENSGACG00000003048)	angpt1 (ENSGACG00000003020)	EXT1 (ENSGACG00000003017)	med30 (ENSGACG00000003014)	SLC30A8 (ENSGACG00000002999)	ENSGACG00000002989	rad21b (ENSGACG00000002984)	utp23 (ENSGACG00000002979)	RNF5 (ENSGACG00000002972)	slc44a4 (ENSGACG00000002956)	ehmt2 (ENSGACG00000002946)	zbtb12.2 (ENSGACG00000002943)	nelfe (ENSGACG00000002935)
Stickleback	MODERN SPECIES	19	ARID1A (ENSGACG00000007244)	gpn2 (ENSGACG00000007225)	gpatch3 (ENSGACG00000007199)	nr0b2a (ENSGACG00000007198)	ENSGACG00000007195	ENSGACG00000007194	tpbgl (ENSGACG00000007188)	tmem222a (ENSGACG00000007178)	wdtc1 (ENSGACG00000007170)	CEP85 (ENSGACG00000007163)	ENSGACG00000007151	ENSGACG00000007141 #17	CLEC3B (ENSGACG00000007136) #18	cdcp1a (ENSGACG00000007130) #19	lars2 (ENSGACG00000007099) #21	LIMD1 (ENSGACG00000007087) #22	deptor (ENSGACG00000007081)	ENSGACG00000007079	COL14A1 (ENSGACG00000007065)	mrpl13 (ENSGACG00000007061)	dscc1 (ENSGACG00000007056)	CPQ (ENSGACG00000007051)	ENSGACG00000007045	ENSGACG00000007040	ENSGACG00000007038	ENSGACG00000007035	ENSGACG00000007020	ENSGACG00000007004	ENSGACG00000006984	PTP4A3 (ENSGACG00000006970)	ENSGACG00000006955
Perciformes_a	ANCESTRAL SPECIES	3	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00940000178119	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b	ENSGT01040000240400.c.b.a.a.a.b
Channel bull blenny	MODERN SPECIES	7	zdhhc18a (ENSCGOG00000008961)	pigv (ENSCGOG00000008975)	ARID1A (ENSCGOG00000008977)	gpn2 (ENSCGOG00000009026)	gpatch3 (ENSCGOG00000009043)	nr0b2a (ENSCGOG00000009050)	ENSCGOG00000009056	tpbgl (ENSCGOG00000009060)	tmem222a (ENSCGOG00000009078)	wdtc1 (ENSCGOG00000009093)	CEP85 (ENSCGOG00000009466)	ENSCGOG00000009483	FEZ2 (ENSCGOG00000009488) #17	CLEC3B (ENSCGOG00000009511) #18	lars2 (ENSCGOG00000009538) #21	LIMD1 (ENSCGOG00000010070) #22	deptor (ENSCGOG00000010119)	COL14A1 (ENSCGOG00000010147)	mrpl13 (ENSCGOG00000011451)	dscc1 (ENSCGOG00000011475)	CPQ (ENSCGOG00000011503)	ENSCGOG00000011638	MRS2 (ENSCGOG00000011642)	CLPTM1L (ENSCGOG00000011685)	ENSCGOG00000011777	ndrg1b (ENSCGOG00000014867)	PTP4A3 (ENSCGOG00000015000)	ENSCGOG00000015016	ENSCGOG00000015033	sntb1 (ENSCGOG00000015039)	ENSCGOG00000015065
Pike perch	DUPLICATION
Pike perch	MODERN SPECIES	13	ENSSLUG00000011206	ADGRB1 (ENSSLUG00000011168)	ENSSLUG00000011159	HERPUD2 (ENSSLUG00000011153)	SLC4A7 (ENSSLUG00000008177)	eomesa (ENSSLUG00000008046)	ENSSLUG00000007200	TGFBR2 (ENSSLUG00000007123)	STT3B (ENSSLUG00000006695)	OSBPL10 (ENSSLUG00000006640)	TMEM42 (ENSSLUG00000006634)	zdhhc3b (ENSSLUG00000006626)	exosc7 (ENSSLUG00000006617)	CLEC3B (ENSSLUG00000006614) ##18	ENSSLUG00000006605 ##19	ENSSLUG00000006600 #22	nrm (ENSSLUG00000006595)	ENSSLUG00000006589	cratb (ENSSLUG00000005548)	ppt2b (ENSSLUG00000005386)	rps5 (ENSSLUG00000005247)	ddah2 (ENSSLUG00000005223)	ENSSLUG00000005210	clic1 (ENSSLUG00000005193)	ENSSLUG00000005188	ENSSLUG00000005181	ENSSLUG00000005177	ENSSLUG00000005170	CSNK2B (ENSSLUG00000005147)	prrc2a (ENSSLUG00000005116)	neu1 (ENSSLUG00000005089)
Pike perch	MODERN SPECIES	15	ARID1A (ENSSLUG00000009196)	gpn2 (ENSSLUG00000009194)	gpatch3 (ENSSLUG00000009185)	nr0b2a (ENSSLUG00000009161)	KDF1 (ENSSLUG00000009138)	tpbgl (ENSSLUG00000009132)	tmem222a (ENSSLUG00000009128)	wdtc1 (ENSSLUG00000009092)	ENSSLUG00000009063	ENSSLUG00000009051	ENSSLUG00000009046	FEZ2 (ENSSLUG00000009039) #17	CLEC3B (ENSSLUG00000009032) #18	TMEM158 (ENSSLUG00000009029) #20	lars2 (ENSSLUG00000006077) #21	LIMD1 (ENSSLUG00000005930) #22	deptor (ENSSLUG00000005894)	COL14A1 (ENSSLUG00000005831)	mrpl13 (ENSSLUG00000005825)	dscc1 (ENSSLUG00000005806)	CPQ (ENSSLUG00000005294)	ENSSLUG00000005217	MRS2 (ENSSLUG00000005198)	CLPTM1L (ENSSLUG00000005157)	ENSSLUG00000007804	ENSSLUG00000007405	PTP4A3 (ENSSLUG00000007370)	ZFAT (ENSSLUG00000007280)	ENSSLUG00000007216	sntb1 (ENSSLUG00000007205)	ENSSLUG00000007203
Percomorphaceae_D	ANCESTRAL SPECIES	2	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b
Anabantaria	ANCESTRAL SPECIES	2	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b
Zig-zag eel	MODERN SPECIES	7	ARID1A (ENSMAMG00000023973)	gpn2 (ENSMAMG00000023974)	ENSMAMG00000023975	nr0b2a (ENSMAMG00000023976)	ENSMAMG00000023977	tpbgl (ENSMAMG00000023978)	tmem222a (ENSMAMG00000024611)	wdtc1 (ENSMAMG00000023980)	ENSMAMG00000023981	ENSMAMG00000023982	ENSMAMG00000023983 #17	CLEC3B (ENSMAMG00000023985) #18	cdcp1a (ENSMAMG00000023984) #19	TMEM158 (ENSMAMG00000023986) #20	lars2 (ENSMAMG00000023987) #21	LIMD1 (ENSMAMG00000023988) #22	deptor (ENSMAMG00000023989)	ENSMAMG00000023990	mrpl13 (ENSMAMG00000023991)	ENSMAMG00000023992	ENSMAMG00000023994	ENSMAMG00000023995	ENSMAMG00000023996	ENSMAMG00000023997	ENSMAMG00000023998	ENSMAMG00000023999	ENSMAMG00000025894	ENSMAMG00000024001	ENSMAMG00000024002	ENSMAMG00000024003	ENSMAMG00000026078
Anabantoidei	ANCESTRAL SPECIES	3	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b
Climbing perch	MODERN SPECIES	7	pigv (ENSATEG00000023748)	gpn2 (ENSATEG00000023756)	ENSATEG00000023759	nr0b2a (ENSATEG00000023764)	ENSATEG00000023767	tpbgl (ENSATEG00000023772)	tmem222a (ENSATEG00000023778)	wdtc1 (ENSATEG00000023785)	ENSATEG00000023798	ENSATEG00000023805	ENSATEG00000023812 #17	CLEC3B (ENSATEG00000028357) #18	cdcp1a (ENSATEG00000023823) #19	TMEM158 (ENSATEG00000023829) #20	lars2 (ENSATEG00000023835) #21	ENSATEG00000030019 #22	deptor (ENSATEG00000023870)	ENSATEG00000023876	mrpl13 (ENSATEG00000028244)	ENSATEG00000023887	ENSATEG00000023892	ENSATEG00000028035	ENSATEG00000023896	ENSATEG00000023901	ENSATEG00000023908	ENSATEG00000023925	ENSATEG00000023959	ENSATEG00000023965	ENSATEG00000023974	ENSATEG00000023980	ENSATEG00000023994
Siamese fighting fish	MODERN SPECIES	7	ARID1A (ENSBSLG00000021801)	gpn2 (ENSBSLG00000022190)	gpatch3 (ENSBSLG00000022200)	nr0b2a (ENSBSLG00000022207)	KDF1 (ENSBSLG00000022210)	tpbgl (ENSBSLG00000022211)	tmem222a (ENSBSLG00000022218)	wdtc1 (ENSBSLG00000022227)	CEP85 (ENSBSLG00000022341)	ENSBSLG00000022408	ENSBSLG00000022435 #17	CLEC3B (ENSBSLG00000022556) #18	ENSBSLG00000022563 #19	cdcp1a (ENSBSLG00000022565) #19	lars2 (ENSBSLG00000022914) #21	LIMD1 (ENSBSLG00000023356) #22	deptor (ENSBSLG00000023466)	COL14A1 (ENSBSLG00000023534)	mrpl13 (ENSBSLG00000023852)	dscc1 (ENSBSLG00000023885)	CPQ (ENSBSLG00000023912)	ENSBSLG00000023957	MRS2 (ENSBSLG00000023966)	ENSBSLG00000023993	ENSBSLG00000024186	ndrg1b (ENSBSLG00000025549)	PTP4A3 (ENSBSLG00000025965)	ENSBSLG00000026018	ENSBSLG00000026082	sntb1 (ENSBSLG00000014136)	ENSBSLG00000014147
Carangaria	ANCESTRAL SPECIES	1	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b
Pleuronectoidei	ANCESTRAL SPECIES	3	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b
Tongue sole	MODERN SPECIES	4	ARID1A (ENSCSEG00000005289)	gpn2 (ENSCSEG00000005283)	gpatch3 (ENSCSEG00000005277)	nr0b2a (ENSCSEG00000005273)	ENSCSEG00000005272	tpbgl (ENSCSEG00000005271)	tmem222a (ENSCSEG00000005261)	wdtc1 (ENSCSEG00000005252)	CEP85 (ENSCSEG00000005242)	ENSCSEG00000005234	ENSCSEG00000005225 #17	CLEC3B (ENSCSEG00000005231) #18	cdcp1a (ENSCSEG00000005216) #19	TMEM158 (ENSCSEG00000005214) #20	lars2 (ENSCSEG00000005202) #21	LIMD1 (ENSCSEG00000005191) #22	deptor (ENSCSEG00000005169)	COL14A1 (ENSCSEG00000005157)	ENSCSEG00000005153	sntb1 (ENSCSEG00000005142)	ENSCSEG00000005134	ENSCSEG00000005115	ENSCSEG00000005099	ndrg1b (ENSCSEG00000005092)	ENSCSEG00000005078	ENSCSEG00000005074	CLPTM1L (ENSCSEG00000005062)	MRS2 (ENSCSEG00000005059)	ENSCSEG00000005055	CPQ (ENSCSEG00000005044)	dscc1 (ENSCSEG00000005030)
Turbot	MODERN SPECIES		ARID1A (ENSSMAG00000002033)	gpn2 (ENSSMAG00000002056)	ENSSMAG00000002067	nr0b2a (ENSSMAG00000002080)	ENSSMAG00000033964	tpbgl (ENSSMAG00000002097)	tmem222a (ENSSMAG00000002110)	wdtc1 (ENSSMAG00000002132)	ENSSMAG00000002177	ENSSMAG00000002239	ENSSMAG00000002284 #17	CLEC3B (ENSSMAG00000002297) #18	cdcp1a (ENSSMAG00000002303) #19	TMEM158 (ENSSMAG00000026497) #20	lars2 (ENSSMAG00000002353) #21	LIMD1 (ENSSMAG00000002424) #22	deptor (ENSSMAG00000002445)	ENSSMAG00000002502	mrpl13 (ENSSMAG00000002558)	ENSSMAG00000002581	ENSSMAG00000002602	ENSSMAG00000002622	ENSSMAG00000002628	ENSSMAG00000035925	ENSSMAG00000002646	ENSSMAG00000002665	ENSSMAG00000002721	ENSSMAG00000003027	ENSSMAG00000003059	ENSSMAG00000003093	ENSSMAG00000003140
Carangaria_A	ANCESTRAL SPECIES	9	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b
Seriola	ANCESTRAL SPECIES	16	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b #17	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00520000055667	ENSGT00940000153769.F.n	ENSGT00390000001515	ENSGT00390000017400	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305	ENSGT00950000182863.A.b
Greater amberjack	MODERN SPECIES	75	ARID1A (ENSSDUG00000017097)	gpn2 (ENSSDUG00000017084)	gpatch3 (ENSSDUG00000017071)	nr0b2a (ENSSDUG00000017067)	ENSSDUG00000017048	tpbgl (ENSSDUG00000017042)	tmem222a (ENSSDUG00000017035)	wdtc1 (ENSSDUG00000016981)	CEP85 (ENSSDUG00000016947)	ENSSDUG00000016879	ENSSDUG00000016827 #17	CLEC3B (ENSSDUG00000016813) #18	cdcp1a (ENSSDUG00000016773) #19	TMEM158 (ENSSDUG00000016762) #20	lars2 (ENSSDUG00000016697) #21	LIMD1 (ENSSDUG00000016680) #22	deptor (ENSSDUG00000016646)	COL14A1 (ENSSDUG00000016525)	mrpl13 (ENSSDUG00000016507)	dscc1 (ENSSDUG00000016477)	CPQ (ENSSDUG00000016423)	ENSSDUG00000016394	MRS2 (ENSSDUG00000016372)	CLPTM1L (ENSSDUG00000016354)	ENSSDUG00000016341	ENSSDUG00000016275	ndrg1b (ENSSDUG00000015947)	PTP4A3 (ENSSDUG00000015910)	ENSSDUG00000015868	ENSSDUG00000015832	sntb1 (ENSSDUG00000015780)
Yellowtail amberjack	MODERN SPECIES	2995	ARID1A (ENSSLDG00000016482)	gpn2 (ENSSLDG00000016533)	gpatch3 (ENSSLDG00000016549)	nr0b2a (ENSSLDG00000016566)	ENSSLDG00000016576	tpbgl (ENSSLDG00000016590)	tmem222a (ENSSLDG00000016627)	wdtc1 (ENSSLDG00000016693)	CEP85 (ENSSLDG00000016737)	ENSSLDG00000016759	ENSSLDG00000016801 #17	CLEC3B (ENSSLDG00000016859) #18	cdcp1a (ENSSLDG00000016901) #19	TMEM158 (ENSSLDG00000016958) #20	lars2 (ENSSLDG00000016976) #21	LIMD1 (ENSSLDG00000017037) #22	deptor (ENSSLDG00000017059)	ENSSLDG00000017114
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	468										OSBPL10 (ENSLCAG00010015550)	TMEM42 (ENSLCAG00010015545)	zdhhc3b (ENSLCAG00010015544)	CLEC3B (ENSLCAG00010015542) ##18	exosc7 (ENSLCAG00010015540)	ENSLCAG00010015537 ##19	ENSLCAG00010015535 #22	nrm (ENSLCAG00010015534)	cratb (ENSLCAG00010015467)	ppt2b (ENSLCAG00010015447)	rps5 (ENSLCAG00010015426)	ddah2 (ENSLCAG00010015401)	ENSLCAG00010015397	clic1 (ENSLCAG00010015394)	ENSLCAG00010015391	ENSLCAG00010015390	ENSLCAG00010015389	CSNK2B (ENSLCAG00010015382)	ENSLCAG00010015371	ENSLCAG00010015365	neu1 (ENSLCAG00010015360)	ENSLCAG00010015352
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	17	gpatch3 (ENSLCAG00010005931)	nr0b2a (ENSLCAG00010005929)	ENSLCAG00010005924	tpbgl (ENSLCAG00010005921)	tmem222a (ENSLCAG00010005916)	wdtc1 (ENSLCAG00010005904)	CEP85 (ENSLCAG00010005896)	ENSLCAG00010005892	ENSLCAG00010005885 #17	CLEC3B (ENSLCAG00010005878) #18	ENSLCAG00010005874	cdcp1a (ENSLCAG00010005869) #19	TMEM158 (ENSLCAG00010005866) #20	lars2 (ENSLCAG00010005379) #21	ENSLCAG00010005250 #22	ENSLCAG00010005246 #22	deptor (ENSLCAG00010005241)	COL14A1 (ENSLCAG00010004721)	mrpl13 (ENSLCAG00010004616)	dscc1 (ENSLCAG00010004610)	CPQ (ENSLCAG00010004593)	ENSLCAG00010004590	ENSLCAG00010004584	MRS2 (ENSLCAG00010004575)	CLPTM1L (ENSLCAG00010004569)	ENSLCAG00010004567	ENSLCAG00010003085	ENSLCAG00010002773	PTP4A3 (ENSLCAG00010002761)	ZFAT (ENSLCAG00010002738)	ENSLCAG00010002726
Barramundi perch	MODERN SPECIES	17	gpn2 (ENSLCAG00010005939)	gpatch3 (ENSLCAG00010005931)	nr0b2a (ENSLCAG00010005929)	ENSLCAG00010005924	tpbgl (ENSLCAG00010005921)	tmem222a (ENSLCAG00010005916)	wdtc1 (ENSLCAG00010005904)	CEP85 (ENSLCAG00010005896)	ENSLCAG00010005892	ENSLCAG00010005885 #17	CLEC3B (ENSLCAG00010005878) #18	ENSLCAG00010005874	cdcp1a (ENSLCAG00010005869) #19	TMEM158 (ENSLCAG00010005866) #20	lars2 (ENSLCAG00010005379) #21	ENSLCAG00010005250 #22	ENSLCAG00010005246 #22	deptor (ENSLCAG00010005241)	COL14A1 (ENSLCAG00010004721)	mrpl13 (ENSLCAG00010004616)	dscc1 (ENSLCAG00010004610)	CPQ (ENSLCAG00010004593)	ENSLCAG00010004590	ENSLCAG00010004584	MRS2 (ENSLCAG00010004575)	CLPTM1L (ENSLCAG00010004569)	ENSLCAG00010004567	ENSLCAG00010003085	ENSLCAG00010002773	PTP4A3 (ENSLCAG00010002761)	ZFAT (ENSLCAG00010002738)
Protacanthopterygii	ANCESTRAL SPECIES	91	ENSGT00390000018131	ENSGT00940000165475	ENSGT00510000047616.b	ENSGT00940000155141.w.b	ENSGT00940000165015	ENSGT00940000160484	ENSGT00940000158416.q.a #7	ENSGT01050000244950.a.a.b	ENSGT00940000166924	ENSGT00390000009168	ENSGT00970000194185.E	ENSGT00940000156772.a	ENSGT00390000010209.c.b #19	ENSGT00390000009719 #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00940000155579.a	ENSGT00940000155873	ENSGT00500000044921.b	ENSGT00940000157845.e	ENSGT00940000159017.a.a	ENSGT00940000162584.i.a	ENSGT00940000157640	ENSGT00940000164984	ENSGT01000000214440.A.a.a	ENSGT00940000157432.B	ENSGT00390000009631	ENSGT00650000093438	ENSGT00940000155536	ENSGT00940000156143.a.a	ENSGT00940000155377
Northern pike	MODERN SPECIES	19	ENSELUG00000005233	hint3 (ENSELUG00000001607)	ENSELUG00000001591	cndp1 (ENSELUG00000005191)	ENSELUG00000005156	gprc6a (ENSELUG00000005130) #7	kpna5 (ENSELUG00000005085)	zufsp (ENSELUG00000005039)	ENSELUG00000024599	rwdd1 (ENSELUG00000027909)	ENSELUG00000024464	cdcp1a (ENSELUG00000024579) #19	TMEM158 (ENSELUG00000027334) #20	ENSELUG00000024450	lars2 (ENSELUG00000024462) #21	LIMD1 (ENSELUG00000024425) #22	sacm1lb (ENSELUG00000001025)	SLC6A20 (ENSELUG00000024263)	ggctb (ENSELUG00000024232)	NOD1 (ENSELUG00000024213)	fzd1 (ENSELUG00000024188)	cdk14 (ENSELUG00000001014)	pttg (ENSELUG00000024157)	ADGRB1 (ENSELUG00000024093)	cep162 (ENSELUG00000023639)	cyb5r4 (ENSELUG00000023618)	sim1a (ENSELUG00000023506)	ASCC3 (ENSELUG00000023441)	GRIK2 (ENSELUG00000023159)	ENSELUG00000023111	HACE1 (ENSELUG00000023064)
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	186			ENSGT00390000017671.a.a.b	ENSGT00530000063023.B.f	ENSGT00940000157045.b.e	ENSGT00940000158728.k.c	ENSGT00940000157131.a.d	ENSGT00940000157131.a.c.b	ENSGT00940000157527.b.c	ENSGT00940000155488.m.a.f	ENSGT00940000157880.g.b.n	ENSGT00390000012690.b.a	ENSGT00940000155721.b.a.f	ENSGT00950000183130.C	ENSGT00390000010209.c.a.g ##19	ENSGT00940000159019.w #22	ENSGT00390000008146	ENSGT00940000170244.b	ENSGT01060000248556.A.a.a.b.m	ENSGT00940000155779.a.b.e	ENSGT00390000010806.ic	ENSGT00940000160769.e	ENSGT00940000154708.b	ENSGT00910000144759	ENSGT00910000144740	ENSGT00510000049347.h.c	ENSGT00390000003781.e.b.a	ENSGT00950000183161.a.a.e	ENSGT00950000182944.D.k	ENSGT00390000011559.g	ENSGT00940000166893.b
Huchen	MODERN SPECIES	218							ENSHHUG00000026299	TGFBR2 (ENSHHUG00000026306)	STT3B (ENSHHUG00000026321)	OSBPL10 (ENSHHUG00000026376)	TMEM42 (ENSHHUG00000026390)	zdhhc3b (ENSHHUG00000026395)	exosc7 (ENSHHUG00000026405)	ENSHHUG00000026422	ENSHHUG00000026427 ##19	ENSHHUG00000026435 #22	nrm (ENSHHUG00000026438)	ENSHHUG00000026440	ppt2b (ENSHHUG00000026446)	rps5 (ENSHHUG00000026524)	ddah2 (ENSHHUG00000026720)	ENSHHUG00000026725	clic1 (ENSHHUG00000026728)	CSNK2B (ENSHHUG00000026740)	neu1 (ENSHHUG00000026803)	ENSHHUG00000026811	ENSHHUG00000026824	skic2 (ENSHHUG00000026851)	nelfe (ENSHHUG00000027299)	ENSHHUG00000027322	ehmt2 (ENSHHUG00000027335)
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	954											ENSGT00940000156772.a.h.a.a	ENSGT00390000009168.g	ENSGT00970000194185.E	ENSGT00390000009719.f #20	ENSGT00390000015114.i.b #21	ENSGT00940000159019.x.a #22
Huchen	MODERN SPECIES	2278										ENSHHUG00000051560	rwdd1 (ENSHHUG00000051571)	ENSHHUG00000051584 #19	ENSHHUG00000051587	TMEM158 (ENSHHUG00000051588) #20	lars2 (ENSHHUG00000051593) #21	LIMD1 (ENSHHUG00000051664) #22	sacm1lb (ENSHHUG00000051668)	ENSHHUG00000051682
Salmoninae_a	ANCESTRAL SPECIES	43	ENSGT00390000018131.d	ENSGT00940000165475.a	ENSGT00510000047616.b.a	ENSGT00940000155141.w.b.n	ENSGT00940000165015.g.b	ENSGT00940000160484.b	ENSGT00940000158416.q.a.f.a.a #7	ENSGT00940000158416.q.a.f.b #7	ENSGT01050000244950.a.a.b.f	ENSGT00940000166924.h	ENSGT00940000156772.a.h.a.a	ENSGT00390000009168.g	ENSGT00970000194185.E	ENSGT00390000009719.f #20	ENSGT00390000015114.i.b #21	ENSGT00940000159019.x.a #22	ENSGT00940000155579.a.f	ENSGT00940000155873.v	ENSGT00500000044921.b.j
Oncorhynchus	ANCESTRAL SPECIES	61	ENSGT00390000000358.y.c.b	ENSGT00940000157815.a.c.b	ENSGT00390000018131.d	ENSGT00940000165475.a	ENSGT00510000047616.b.a	ENSGT00940000155141.w.b.n	ENSGT00940000165015.g.b	ENSGT00940000160484.b	ENSGT00940000158416.q.a.f.a.a #7	ENSGT01050000244950.a.a.b.f	ENSGT00940000166924.h	ENSGT00940000156772.a.h.b	ENSGT00390000009168.h.b	ENSGT00970000194185.E	ENSGT00390000015114.i.b #21	ENSGT00940000159019.x.a #22	ENSGT00940000155579.a.f	ENSGT00940000155873.v	ENSGT00500000044921.b.j
Oncorhynchus_a	ANCESTRAL SPECIES	68	ENSGT00390000000358.y.c.b	ENSGT00940000157815.a.c.b	ENSGT00390000018131.d	ENSGT00940000165475.a	ENSGT00510000047616.b.a	ENSGT00940000155141.w.b.n	ENSGT00940000165015.g.b	ENSGT00940000160484.b	ENSGT00940000158416.q.a.f.a.a #7	ENSGT01050000244950.a.a.b.f	ENSGT00940000166924.h	ENSGT00940000156772.a.h.b	ENSGT00390000009168.h.b	ENSGT00970000194185.E	ENSGT00390000015114.i.b #21	ENSGT00940000159019.x.a #22	ENSGT00940000155579.a.f	ENSGT00940000155873.v	ENSGT00500000044921.b.j
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	22	rspo3 (ENSOTSG00005041538)	trmt11 (ENSOTSG00005041539)	ENSOTSG00005042017	hint3 (ENSOTSG00005042019)	ENSOTSG00005042020	cndp1 (ENSOTSG00005042022)	ENSOTSG00005042048	gprc6a (ENSOTSG00005042050) #7	kpna5 (ENSOTSG00005042052)	zufsp (ENSOTSG00005042147)	ENSOTSG00005042149	rwdd1 (ENSOTSG00005042150)	ENSOTSG00005042151	lars2 (ENSOTSG00005042152) #21	ENSOTSG00005042153 #22	ENSOTSG00005042154 #22	sacm1lb (ENSOTSG00005042155)	SLC6A20 (ENSOTSG00005042161)	ggctb (ENSOTSG00005042172)	ENSOTSG00005042173	ENSOTSG00005042174	znrf2b (ENSOTSG00005042175)	cdk14 (ENSOTSG00005042177)	ENSOTSG00005042180	ADGRB1 (ENSOTSG00005042185)	ENSOTSG00005042233	ndufv2 (ENSOTSG00005042235)	ankrd12 (ENSOTSG00005042236)	ENSOTSG00005042238	ENSOTSG00005042239	dpys (ENSOTSG00005042240)
Chinook salmon	MODERN SPECIES	22	RNF146 (ENSOTSG00005041537)	rspo3 (ENSOTSG00005041538)	trmt11 (ENSOTSG00005041539)	ENSOTSG00005042017	hint3 (ENSOTSG00005042019)	ENSOTSG00005042020	cndp1 (ENSOTSG00005042022)	ENSOTSG00005042048	gprc6a (ENSOTSG00005042050) #7	kpna5 (ENSOTSG00005042052)	zufsp (ENSOTSG00005042147)	ENSOTSG00005042149	rwdd1 (ENSOTSG00005042150)	ENSOTSG00005042151	lars2 (ENSOTSG00005042152) #21	ENSOTSG00005042153 #22	ENSOTSG00005042154 #22	sacm1lb (ENSOTSG00005042155)	SLC6A20 (ENSOTSG00005042161)	ggctb (ENSOTSG00005042172)	ENSOTSG00005042173	ENSOTSG00005042174	znrf2b (ENSOTSG00005042175)	cdk14 (ENSOTSG00005042177)	ENSOTSG00005042180	ADGRB1 (ENSOTSG00005042185)	ENSOTSG00005042233	ndufv2 (ENSOTSG00005042235)	ankrd12 (ENSOTSG00005042236)	ENSOTSG00005042238	ENSOTSG00005042239
Coho salmon	MODERN SPECIES	11	RNF146 (ENSOKIG00005003999)	RSPO3 (ENSOKIG00005003997)	ENSOKIG00005003994	trmt11 (ENSOKIG00005003888)	ENSOKIG00005003869	hint3 (ENSOKIG00005003863)	ENSOKIG00005003854	ENSOKIG00005003800	ENSOKIG00005003786	ENSOKIG00005003782	gprc6a (ENSOKIG00005003766) #7	kpna5 (ENSOKIG00005003680)	zufsp (ENSOKIG00005003657)	rwdd1 (ENSOKIG00005003649)	LARS2 (ENSOKIG00005003630) #21	LIMD1 (ENSOKIG00005003616) #22	sacm1lb (ENSOKIG00005003577)	SLC6A20 (ENSOKIG00005003433)	ggctb (ENSOKIG00005003412)	ENSOKIG00005003409	ENSOKIG00005003406	NOD1 (ENSOKIG00005003244)	ZNRF2 (ENSOKIG00005003198)	fzd1 (ENSOKIG00005003190)	cdk14 (ENSOKIG00005002841)	ENSOKIG00005002793	ENSOKIG00005002783	ENSOKIG00005002777	ENSOKIG00005002768	cyb5r4 (ENSOKIG00005002753)	mrap2a (ENSOKIG00005002743)
Rainbow trout	MODERN SPECIES	21	ENSOMYG00000067380	RSPO3 (ENSOMYG00000037007)	trmt11 (ENSOMYG00000037042)	ENSOMYG00000002683	hint3 (ENSOMYG00000037548)	ENSOMYG00000037554	ENSOMYG00000037602	gprc6a (ENSOMYG00000037712) #7	kpna5 (ENSOMYG00000037832)	zufsp (ENSOMYG00000037863)	ENSOMYG00000037913	rwdd1 (ENSOMYG00000037897)	TMEM158 (ENSOMYG00000037946) #20	ENSOMYG00000072820	LARS2 (ENSOMYG00000037966) #21	LIMD1 (ENSOMYG00000038009) #22	sacm1lb (ENSOMYG00000038049)	SLC6A20 (ENSOMYG00000038064)	ggctb (ENSOMYG00000038076)	ENSOMYG00000038088	ENSOMYG00000038181	znrf2b (ENSOMYG00000038321)	fzd1 (ENSOMYG00000038333)	ENSOMYG00000070766	ENSOMYG00000059215	cdk14 (ENSOMYG00000038342)	PTTG (ENSOMYG00000038352)	ENSOMYG00000038377	ENSOMYG00000073288	ENSOMYG00000038550	cep162 (ENSOMYG00000038682)
Salmo	ANCESTRAL SPECIES	127	ENSGT00940000165475.a	ENSGT00510000047616.b.a	ENSGT00940000155141.w.b.n	ENSGT00940000165015.g.b	ENSGT00940000160484.b	ENSGT00940000158416.q.a.f.a.a #7	ENSGT00940000158416.q.a.f.b #7	ENSGT01050000244950.a.a.b.f	ENSGT00940000166924.h	ENSGT00940000156772.a.h.a.b	ENSGT00940000156772.a.h.a.a	ENSGT00390000009168.g	ENSGT00970000194185.E	ENSGT00390000009719.f #20	ENSGT00390000015114.i.b #21	ENSGT00940000159019.x.a #22	ENSGT00940000155579.a.f	ENSGT00940000155873.v	ENSGT00500000044921.b.j
River trout	MODERN SPECIES	30	trmt11 (ENSSTUG00000023072)	ENSSTUG00000023055	hint3 (ENSSTUG00000023047)	ENSSTUG00000023038	cndp1 (ENSSTUG00000022903)	ENSSTUG00000022883	gprc6a (ENSSTUG00000022841) #7	gprc6a (ENSSTUG00000022803) #7	kpna5 (ENSSTUG00000022557)	zufsp (ENSSTUG00000022516)	ENSSTUG00000022493	rwdd1 (ENSSTUG00000022476)	ENSSTUG00000022474	TMEM158 (ENSSTUG00000022468) #20	lars2 (ENSSTUG00000022397) #21	LIMD1 (ENSSTUG00000026889) #22	sacm1lb (ENSSTUG00000026790)	SLC6A20 (ENSSTUG00000026648)	ggctb (ENSSTUG00000026625)	ENSSTUG00000026615	NOD1 (ENSSTUG00000025850)	znrf2b (ENSSTUG00000025817)	fzd1 (ENSSTUG00000025810)	cdk14 (ENSSTUG00000025514)	ENSSTUG00000025481	ENSSTUG00000025476	ENSSTUG00000025474	ENSSTUG00000025457	ENSSTUG00000025424	cep162 (ENSSTUG00000025349)	mrap2a (ENSSTUG00000025335)
Atlantic salmon	MODERN SPECIES	11	trmt11 (ENSSSAG00000050902)	ENSSSAG00000103054	hint3 (ENSSSAG00000051374)	ENSSSAG00000051388	ENSSSAG00000113677	ENSSSAG00000051418	gprc6a (ENSSSAG00000051396) #7	gprc6a (ENSSSAG00000051760) #7	ima5 (ENSSSAG00000051836)	zufsp (ENSSSAG00000052211)	RWDD1 (ENSSSAG00000052237)	ENSSSAG00000052226	ENSSSAG00000087077	TMEM158 (ENSSSAG00000097836) #20	LARS2 (ENSSSAG00000052268) #21	LIMD1 (ENSSSAG00000052549) #22	sacm1lb (ENSSSAG00000089428)	ggctb (ENSSSAG00000053479)	cg024 (ENSSSAG00000113549)	SLC6A20 (ENSSSAG00000053238)	ENSSSAG00000091675	ENSSSAG00000064543	znrf2b (ENSSSAG00000053869)	fzd1 (ENSSSAG00000121276)	cdk14 (ENSSSAG00000063194)	ENSSSAG00000055046	ENSSSAG00000055062	ENSSSAG00000090447	ENSSSAG00000055096	cep162 (ENSSSAG00000055206)	ENSSSAG00000103286
Salmoninae	ANCESTRAL SPECIES	98												ENSGT00940000156772.a.g	ENSGT00390000010209.c.b #19	ENSGT00390000009719.e.b #20	ENSGT00390000015114.i.a #21	ENSGT00940000159019.x.b #22	ENSGT00940000155579.a	ENSGT00940000155873.u	ENSGT00500000044921.b	ENSGT00940000157845.e.b	ENSGT00940000157845.e.a	ENSGT00940000159017.a.a	ENSGT00940000162584.i.a.b	ENSGT00940000162584.i.a.a	ENSGT00940000157640.c	ENSGT00940000164984.f	ENSGT01000000214440.A.a.a	ENSGT00940000157432.B	ENSGT00390000009631	ENSGT00650000093438.j	ENSGT00940000155536
Salmoninae_a	ANCESTRAL SPECIES	127	ENSGT00940000158008.a	ENSGT00390000018131.c	ENSGT00940000165475.b	ENSGT00510000047616.b.b	ENSGT00940000155141.w.b.m	ENSGT00940000165015.g.a	ENSGT00940000160484.a	ENSGT00940000158416.q.a.f.a.b #7	ENSGT01050000244950.a.a.b.e	ENSGT00940000166924.g	ENSGT00940000156772.a.g	ENSGT00390000009168.h	ENSGT00390000010209.c.b #19	ENSGT00390000009719.e.b #20	ENSGT00390000015114.i.a #21	ENSGT00940000159019.x.b #22	ENSGT00940000155579.a.e	ENSGT00940000155873.u	ENSGT00500000044921.b.i	ENSGT01000000214993.b.a.a	ENSGT00940000157845.e.b	ENSGT00940000157845.e.a.d	ENSGT00940000159017.a.a	ENSGT00940000157640.d.b	ENSGT00940000164984.e.b	ENSGT01000000214440.A.a.a.d	ENSGT00940000157432.B.f	ENSGT00390000009631	ENSGT00650000093438.j.a.a	ENSGT00940000155536.kb.b	ENSGT00940000156143.a.a.a
Oncorhynchus	ANCESTRAL SPECIES	3	ENSGT00390000000358.y.c.a	ENSGT00940000157815.a.c.a	ENSGT00390000018131.c.c	ENSGT00940000165475.b	ENSGT00940000155141.w.b.m	ENSGT00940000165015.g.a	ENSGT00940000160484.a	ENSGT00940000158416.q.a.f.a.b #7	ENSGT01050000244950.a.a.b.e	ENSGT00940000166924.g	ENSGT00940000156772.a.g	ENSGT00390000009168.h.a	ENSGT00390000010209.c.b #19	ENSGT00390000009719.e.b #20	ENSGT00390000015114.i.a #21	ENSGT00940000159019.x.b #22	ENSGT00940000155579.a.e	ENSGT00940000155873.u.a	ENSGT01000000214993.b.a.a	ENSGT01080000259569	ENSGT00940000157845.e.b	ENSGT00940000157845.e.a.c	ENSGT00940000159017.a.a	ENSGT00940000162584.i.a.b	ENSGT00940000157640.c.b	ENSGT00940000162584.i.a.a	ENSGT00940000157640.c.a	ENSGT00940000164984.f	ENSGT01000000214440.A.a.a.c	ENSGT00940000157432.B.e.a	ENSGT00650000093438.j.a.b
Rainbow trout	MODERN SPECIES	11	RNF146 (ENSOMYG00000002835)	RSPO3 (ENSOMYG00000002826)	TRMT11 (ENSOMYG00000002785)	ENSOMYG00000037546	ENSOMYG00000002678	ENSOMYG00000074798	ENSOMYG00000002642	gprc6a (ENSOMYG00000002535) #7	kpna5 (ENSOMYG00000002341)	zufsp (ENSOMYG00000001962)	ENSOMYG00000001956	rwdd1 (ENSOMYG00000001927)	cdcp1a (ENSOMYG00000001894) #19	TMEM158 (ENSOMYG00000001890) #20	LARS2 (ENSOMYG00000001319) #21	LIMD1 (ENSOMYG00000000794) #22	sacm1lb (ENSOMYG00000000774)	SLC6A20 (ENSOMYG00000000726)	ggctb (ENSOMYG00000000690)	ENSOMYG00000000671	ENSOMYG00000000669	ENSOMYG00000000640	ENSOMYG00000076125	ENSOMYG00000000677	znrf2b (ENSOMYG00000000514)	fzd1 (ENSOMYG00000000499)	ENSOMYG00000066480	cdk14 (ENSOMYG00000000478)	PTTG (ENSOMYG00000000395)	ENSOMYG00000049652	ENSOMYG00000000377
Oncorhynchus_a	ANCESTRAL SPECIES	26	ENSGT00390000000358.y.c.a	ENSGT00940000157815.a.c.a	ENSGT00390000018131.c.c	ENSGT00940000165475.b	ENSGT00940000155141.w.b.m	ENSGT00940000165015.g.a	ENSGT00940000160484.a	ENSGT00940000158416.q.a.f.a.b #7	ENSGT01050000244950.a.a.b.e	ENSGT00940000166924.g	ENSGT00940000156772.a.g	ENSGT00390000009168.h.a	ENSGT00390000010209.c.b #19	ENSGT00390000009719.e.b #20	ENSGT00390000015114.i.a #21	ENSGT00940000159019.x.b #22	ENSGT00940000155579.a.e	ENSGT00940000155873.u.a	ENSGT00500000044921.b.i	ENSGT00940000166466.e.b.b.a	ENSGT01000000214993.b.a.a	ENSGT01080000259569	ENSGT00940000157845.e.b	ENSGT00940000157845.e.a.c	ENSGT00940000159017.a.a	ENSGT00940000157640.d.b	ENSGT00940000164984.e.b	ENSGT00940000157432.B.e.b	ENSGT00650000093438.i	ENSGT00940000155536.kb.a	ENSGT00940000162584.i.a.a
Chinook salmon	MODERN SPECIES	253															lars2 (ENSOTSG00005038980) #21	LIMD1 (ENSOTSG00005039047) #22	sacm1lb (ENSOTSG00005039074)	SLC6A20 (ENSOTSG00005039148)	ggctb (ENSOTSG00005039153)	ENSOTSG00005039164	ENSOTSG00005039167	ENSOTSG00005039169	NOD1 (ENSOTSG00005039171)	ENSOTSG00005039174
Coho salmon	MODERN SPECIES	4	MATN2 (ENSOKIG00005008387)	RNF146 (ENSOKIG00005008404)	rspo3 (ENSOKIG00005008411)	trmt11 (ENSOKIG00005008436)	ENSOKIG00005008517	ENSOKIG00005008543	CNDP1 (ENSOKIG00005008587)	gprc6a (ENSOKIG00005008873) #7	kpna5 (ENSOKIG00005008920)	zufsp (ENSOKIG00005009182)	ENSOKIG00005009198	rwdd1 (ENSOKIG00005009210)	cdcp1a (ENSOKIG00005009236) #19	TMEM158 (ENSOKIG00005009269) #20	lars2 (ENSOKIG00005009431) #21	LIMD1 (ENSOKIG00005012238) #22	sacm1lb (ENSOKIG00005012319)	ENSOKIG00005012496	SLC6A20 (ENSOKIG00005012533)	ggctb (ENSOKIG00005012749)	ENSOKIG00005012797	ENSOKIG00005012802	NOD1 (ENSOKIG00005012884)	znrf2b (ENSOKIG00005013826)	ENSOKIG00005013837	fzd1 (ENSOKIG00005013843)	cdk14 (ENSOKIG00005013886)	ENSOKIG00005014063	ENSOKIG00005014083	ENSOKIG00005014093	ADGRB1 (ENSOKIG00005014157)
Salmo	ANCESTRAL SPECIES	66	ENSGT00390000000358.y.d.a	ENSGT00940000157815.a.c.d	ENSGT00390000018131.c	ENSGT00940000165475.b.b	ENSGT00510000047616.b.b	ENSGT00940000165015.g.a	ENSGT00940000160484.a	ENSGT00940000158416.q.a.f.a.b #7	ENSGT01050000244950.a.a.b.e	ENSGT00940000166924.g	ENSGT00940000156772.a.g	ENSGT00390000009168.h	ENSGT00390000010209.c.b #19	ENSGT00390000009719.e.b.a #20	ENSGT00390000015114.i.a #21	ENSGT00940000159019.x.b #22	ENSGT00940000155579.a.e	ENSGT00940000155873.u	ENSGT00500000044921.b.i	ENSGT01000000214993.b.a.a	ENSGT01090000260586.a	ENSGT00940000157845.e.b	ENSGT00940000157845.e.a.d	ENSGT00940000159017.a.a	ENSGT00940000162584.i.a.b	ENSGT00940000157640.c.b	ENSGT00940000164984.e.a.a	ENSGT00940000162584.i.a.a	ENSGT00940000157640.c.a	ENSGT00940000164984.f	ENSGT01000000214440.A.a.a.c
Atlantic salmon	MODERN SPECIES	24	ENSSSAG00000050743	RNF146 (ENSSSAG00000101201)	rspo3 (ENSSSAG00000069316)	trmt11 (ENSSSAG00000069286)	ENSSSAG00000120109	hint3 (ENSSSAG00000069265)	ENSSSAG00000090192	cndp1 (ENSSSAG00000100926)	gprc6a (ENSSSAG00000068665) #7	ENSSSAG00000068034	ENSSSAG00000067985	RWDD1 (ENSSSAG00000067972)	cdcp1a (ENSSSAG00000067966) #19	TMEM158 (ENSSSAG00000116740) #20	LARS2 (ENSSSAG00000065347) #21	LIMD1 (ENSSSAG00000065207) #22	sacm1lb (ENSSSAG00000101926)	ENSSSAG00000098266	SLC6A20 (ENSSSAG00000064968)	ggctb (ENSSSAG00000064918)	ENSSSAG00000064903	ENSSSAG00000064897	ENSSSAG00000053537	znrf2b (ENSSSAG00000103709)	fzd1 (ENSSSAG00000064504)	cdk14 (ENSSSAG00000053926)	ENSSSAG00000063149	ENSSSAG00000063125	ENSSSAG00000120362	ENSSSAG00000059035	ENSSSAG00000058739
River trout	MODERN SPECIES	22	LAPTM4B (ENSSTUG00000023487)	ENSSTUG00000023500	RNF146 (ENSSTUG00000023569)	rspo3 (ENSSTUG00000023575)	trmt11 (ENSSTUG00000023602)	ENSSTUG00000023735	CNDP1 (ENSSTUG00000023751)	gprc6a (ENSSTUG00000023914) #7	kpna5 (ENSSTUG00000023963)	zufsp (ENSSTUG00000024499)	ENSSTUG00000024525	rwdd1 (ENSSTUG00000024551)	cdcp1a (ENSSTUG00000024566) #19	TMEM158 (ENSSTUG00000024585) #20	lars2 (ENSSTUG00000024683) #21	LIMD1 (ENSSTUG00000027910) #22	sacm1lb (ENSSTUG00000027950)	SLC6A20 (ENSSTUG00000028009)	ggctb (ENSSTUG00000028297)	ENSSTUG00000028379	ENSSTUG00000028388	NOD1 (ENSSTUG00000028440)	ENSSTUG00000029205	fzd1 (ENSSTUG00000029242)	cdk14 (ENSSTUG00000029276)	ENSSTUG00000029597	ENSSTUG00000029628	ADGRB1 (ENSSTUG00000029658)	ENSSTUG00000030075	ENSSTUG00000030092	mrap2a (ENSSTUG00000000071)
Huchen	MODERN SPECIES	1525						cndp1 (ENSHHUG00000048352)	CNDP1 (ENSHHUG00000048370)	kpna5 (ENSHHUG00000048415)	zufsp (ENSHHUG00000048561)	ENSHHUG00000048620	rwdd1 (ENSHHUG00000048631)	ENSHHUG00000048645	ENSHHUG00000048648 #19	TMEM158 (ENSHHUG00000048654) #20	lars2 (ENSHHUG00000048664) #21	LIMD1 (ENSHHUG00000048859) #22	sacm1lb (ENSHHUG00000048865)	SLC6A20 (ENSHHUG00000048987)	ggctb (ENSHHUG00000049025)	ENSHHUG00000049048	NOD1 (ENSHHUG00000049053)	ENSHHUG00000049150	ENSHHUG00000049157
Osteoglossiformes	ANCESTRAL SPECIES	178	ENSGT00940000157045.a	ENSGT00940000158728.l	ENSGT00940000153704.A.q	ENSGT00940000157527	ENSGT00940000155488	ENSGT00940000157880.g.a.a	ENSGT00390000003114.e.b.b	ENSGT00390000001296	ENSGT00390000012690	ENSGT00940000155721.b.a.j	ENSGT00950000183130.C	ENSGT00950000183186.B.b.c #18	ENSGT00390000010209.c.b #19	ENSGT00390000009719.c #20	ENSGT00390000015114 #21	ENSGT00940000159019 #22	ENSGT00510000047245.wb	ENSGT00940000155873.q	ENSGT00500000044921.b	ENSGT00940000157845	ENSGT00940000159017.a.a.b	ENSGT00390000017724.a.a	ENSGT00390000017724.b	ENSGT00940000156679	ENSGT00390000018500.b.b.a	ENSGT00940000155892	ENSGT00940000155619	ENSGT00390000016225	ENSGT00940000156421	ENSGT01030000234583.a.b.b.e.b	ENSGT00390000002564.a
P. kingsleyae	MODERN SPECIES	393				pcnt (ENSPKIG00000023895)	ENSPKIG00000023836	aqp10a (ENSPKIG00000023799)	ENSPKIG00000023783	ubap2l (ENSPKIG00000023687)	zgc:123238 (ENSPKIG00000023636)	ENSPKIG00000023587	SHE (ENSPKIG00000023556)	CHRNB2 (ENSPKIG00000023534)	s100t (ENSPKIG00000023515)	TMEM158 (ENSPKIG00000023501) #20	lars2 (ENSPKIG00000023485) #21	LIMD1 (ENSPKIG00000023463) #22	ENSPKIG00000023129	ENSPKIG00000022972	ENSPKIG00000022959	ENSPKIG00000022929
Asian bonytongue	MODERN SPECIES	23	dpy19l1l (ENSSFOG00015022599)	SLC4A7 (ENSSFOG00015022545)	EOMES (ENSSFOG00015022530)	azi2 (ENSSFOG00015026954)	tgfbr2b (ENSSFOG00015022490)	ENSSFOG00015022479	OSBPL10 (ENSSFOG00015022460)	gpd1l (ENSSFOG00015022432)	zgc:77056 (ENSSFOG00015022450)	tmem42a (ENSSFOG00015025814)	TGM4 (ENSSFOG00015022410)	exosc7 (ENSSFOG00015022389)	CLEC3B (ENSSFOG00015031060) #18	TMEM158 (ENSSFOG00015022373) #20	lars2 (ENSSFOG00015022305) #21	ENSSFOG00015026619 #22	SNRPD1 (ENSSFOG00015030736)	SLC6A20 (ENSSFOG00015022234)	ZDHHC18 (ENSSFOG00015022228)	tent5bb (ENSSFOG00015022222)	tcea3 (ENSSFOG00015022165)	oprd1b (ENSSFOG00015021784)	rcc1 (ENSSFOG00015021697)	phactr4b (ENSSFOG00015021603)	ENSSFOG00015021562	HIVEP3 (ENSSFOG00015021540)	SERINC2 (ENSSFOG00015021513)	ENSSFOG00015021506	stmn1b (ENSSFOG00015026859)	paqr7b (ENSSFOG00015021484)	ENSSFOG00015027073