Rodentia_A	ANCESTRAL SPECIES	10	ENSGT00390000015880 #8	ENSGT00940000162095 #9	ENSGT00940000154762.a.b #10	ENSGT00530000063975 #11	ENSGT00390000009243 #12	ENSGT00730000111510	ENSGT00940000156345 #13	ENSGT00940000155414 #14	ENSGT00390000006821 #15	ENSGT00550000075050 #16	ENSGT00940000159426 #17	ENSGT00940000159414 #18	ENSGT00940000160349 #19	ENSGT00940000160014 #20	ENSGT00940000162266 #21	ENSGT00940000157317 #22	ENSGT00390000006208.a #23	ENSGT00940000165238 #24	ENSGT00940000167689	ENSGT00940000154823 #25	ENSGT00940000156014 #27	ENSGT00940000159212.a #28	ENSGT00510000047059.l #29	ENSGT00390000008135 #30	ENSGT00940000153883.b #31	ENSGT00940000154540.a #32	ENSGT00940000161327 #33	ENSGT00390000006030.d.a.b #34	ENSGT00390000014189 #35	ENSGT00950000183122.B #36	ENSGT00390000001752 #37
Hystricomorpha	ANCESTRAL SPECIES	17	ENSGT00390000015880 #8	ENSGT00940000162095 #9	ENSGT00940000154762.a.b #10	ENSGT00530000063975 #11	ENSGT00390000009243 #12	ENSGT00730000111510	ENSGT00940000156345 #13	ENSGT00940000155414 #14	ENSGT00390000006821 #15	ENSGT00550000075050 #16	ENSGT00940000159426 #17	ENSGT00940000159414 #18	ENSGT00940000160349 #19	ENSGT00940000160014 #20	ENSGT00940000162266 #21	ENSGT00940000157317 #22	ENSGT00390000006208.a.c #23	ENSGT00940000165238 #24	ENSGT00940000154823 #25	ENSGT00940000156014 #27	ENSGT00940000159212.a #28	ENSGT00510000047059.l #29	ENSGT00390000008135 #30	ENSGT00940000153883.b #31	ENSGT00940000154540.a #32	ENSGT00940000161327 #33	ENSGT00390000006030.d.a.b #34	ENSGT00390000014189.g.a #35	ENSGT00950000183122.B #36	ENSGT00390000001752 #37	ENSGT00940000157044.e.b
Hystricomorpha_a	ANCESTRAL SPECIES	16	ENSGT00390000015880 #8	ENSGT00940000162095 #9	ENSGT00940000154762.a.b #10	ENSGT00530000063975 #11	ENSGT00390000009243 #12	ENSGT00730000111510	ENSGT00940000156345 #13	ENSGT00940000155414 #14	ENSGT00390000006821 #15	ENSGT00550000075050 #16	ENSGT00940000159426 #17	ENSGT00940000159414 #18	ENSGT00940000160349 #19	ENSGT00940000160014 #20	ENSGT00940000162266 #21	ENSGT00940000157317 #22	ENSGT00390000006208.a.c #23	ENSGT00940000165238 #24	ENSGT00940000154823 #25	ENSGT00940000156014 #27	ENSGT00940000159212.a #28	ENSGT00510000047059.l #29	ENSGT00390000008135 #30	ENSGT00940000153883.b #31	ENSGT00940000154540.a #32	ENSGT00940000161327 #33	ENSGT00390000006030.d.a.b #34	ENSGT00390000014189.g.a #35	ENSGT00950000183122.B #36	ENSGT00390000001752 #37	ENSGT00940000157044.f
Hystricomorpha_b	ANCESTRAL SPECIES	38	ENSGT00390000015880 #8	ENSGT00940000162095 #9	ENSGT00940000154762.a.b #10	ENSGT00530000063975 #11	ENSGT00390000009243 #12	ENSGT00730000111510	ENSGT00940000156345 #13	ENSGT00940000155414 #14	ENSGT00390000006821 #15	ENSGT00550000075050 #16	ENSGT00940000159426 #17	ENSGT00940000159414 #18	ENSGT00940000160349 #19	ENSGT00940000160014 #20	ENSGT00940000162266 #21	ENSGT00940000157317 #22	ENSGT00390000006208.a.c #23	ENSGT00940000165238 #24	ENSGT00940000154823 #25	ENSGT00940000156014 #27	ENSGT00940000159212.a #28	ENSGT00510000047059.l #29	ENSGT00390000008135 #30	ENSGT00940000153883.b #31	ENSGT00940000154540.a #32	ENSGT00940000161327 #33	ENSGT00390000006030.d.a.b #34	ENSGT00390000014189.g.a #35	ENSGT00950000183122.B #36	ENSGT00390000001752 #37	ENSGT00940000157044.f
Long-tailed chinchilla	MODERN SPECIES	163	STX1A (ENSCLAG00000005586) #7	ABHD11 (ENSCLAG00000007679) #8	CLDN3 (ENSCLAG00000017844) #9	CLDN4 (ENSCLAG00000017992) #10	METTL27 (ENSCLAG00000005194) #11	ENSCLAG00000012225 #12	LIMK1 (ENSCLAG00000009497) #13	EIF4H (ENSCLAG00000012003) #14	ENSCLAG00000008208 #15	RFC2 (ENSCLAG00000009716) #16	CLIP2 (ENSCLAG00000005174) #17	GTF2IRD1 (ENSCLAG00000007139) #18	GTF2I (ENSCLAG00000004967) #19	NCF1 (ENSCLAG00000012338) #20	ENSCLAG00000009126 #21	RCC1L (ENSCLAG00000006691) #22	CASTOR2 (ENSCLAG00000006146) #23	ENSCLAG00000017618 #24	ENSCLAG00000007862 #25	ENSCLAG00000008234 #26	GALNT17 (ENSCLAG00000006308) #27	CALN1 (ENSCLAG00000017310) #28	ENSCLAG00000006321 #29	ENSCLAG00000005721 #30	TMEM248 (ENSCLAG00000005032) #31	RABGEF1 (ENSCLAG00000004534) #32	KCTD7 (ENSCLAG00000007230) #33	TPST1 (ENSCLAG00000006101) #34	CRCP (ENSCLAG00000007249) #35	ASL (ENSCLAG00000005690) #36	GUSB (ENSCLAG00000006162) #37
Degu	MODERN SPECIES	76	STX1A (ENSODEG00000015835) #7	CLDN3 (ENSODEG00000020387) #9	CLDN4 (ENSODEG00000020405) #10	METTL27 (ENSODEG00000015241) #11	ENSODEG00000015892 #12	ELN (ENSODEG00000016045)	LIMK1 (ENSODEG00000015076) #13	ENSODEG00000015854 #14	ENSODEG00000016042 #15	ENSODEG00000015354 #16	CLIP2 (ENSODEG00000015462) #17	GTF2IRD1 (ENSODEG00000015635) #18	GTF2I (ENSODEG00000015405) #19	NCF1 (ENSODEG00000015696) #20	ENSODEG00000014736 #21	RCC1L (ENSODEG00000014434) #22	CASTOR2 (ENSODEG00000014375) #23	ENSODEG00000015156	ENSODEG00000020386	ENSODEG00000014573	ENSODEG00000020215 #24	ENSODEG00000020176	ENSODEG00000014150	ENSODEG00000014737 #25	AUTS2 (ENSODEG00000016622) #25	ENSODEG00000020191	GALNT17 (ENSODEG00000016292) #27	CALN1 (ENSODEG00000015050) #28	ENSODEG00000014729 #29	ENSODEG00000015687 #30	ENSODEG00000016093
Guinea pig	MODERN SPECIES	219												GTF2IRD1 (ENSCPOG00000004421) #18	GTF2I (ENSCPOG00000004071) #19	NCF1 (ENSCPOG00000000189) #20	ENSCPOG00000022638 #21	RCC1L (ENSCPOG00000000496) #22	CASTOR2 (ENSCPOG00000032971) #23
Naked mole-rat female	MODERN SPECIES		STX1A (ENSHGLG00000010000) #7	ABHD11 (ENSHGLG00000043301) #8	CLDN3 (ENSHGLG00000044396) #9	CLDN4 (ENSHGLG00000046697) #10	ENSHGLG00000049431	LIMK1 (ENSHGLG00000018556) #13	ENSHGLG00000037032	ENSHGLG00000040818 #15	RFC2 (ENSHGLG00000012236) #16	ENSHGLG00000037210 #17	GTF2IRD1 (ENSHGLG00000017547) #18	ENSHGLG00000045511	GTF2I (ENSHGLG00000006657) #19	ENSHGLG00000050966 #21	ENSHGLG00000036828 #21	ENSHGLG00000016041 #22	ENSHGLG00000012588 #23	ENSHGLG00000049448	ENSHGLG00000041566	ENSHGLG00000007764 #25	ENSHGLG00000045084	ENSHGLG00000048626	ENSHGLG00000019442 #27	ENSHGLG00000049055	ENSHGLG00000014061 #28	ENSHGLG00000012093 #29	SBDS (ENSHGLG00000009671) #30	TMEM248 (ENSHGLG00000015603) #31	RABGEF1 (ENSHGLG00000013753) #32	KCTD7 (ENSHGLG00000042509) #33	TPST1 (ENSHGLG00000015982) #34
Sciuridae	ANCESTRAL SPECIES	9	ENSGT00390000015880 #8	ENSGT00940000162095 #9	ENSGT00940000154762.a.b #10	ENSGT00530000063975 #11	ENSGT00390000009243 #12	ENSGT00730000111510	ENSGT00940000156345 #13	ENSGT00940000155414 #14	ENSGT00390000006821 #15	ENSGT00550000075050 #16	ENSGT00940000159426 #17	ENSGT00940000159414 #18	ENSGT00940000160349 #19	ENSGT00940000160014 #20	ENSGT00940000162266 #21	ENSGT00940000157317 #22	ENSGT00390000006208.a #23	ENSGT00940000167689	ENSGT00940000154823 #25	ENSGT00940000156014 #27	ENSGT00940000159212.a #28	ENSGT00510000047059.l #29	ENSGT00390000008135 #30	ENSGT00940000153883.b #31	ENSGT00940000154540.a #32	ENSGT00940000161327 #33	ENSGT00390000006030.d.a.b #34	ENSGT00390000014189 #35	ENSGT00950000183122.B #36	ENSGT00390000001752 #37	ENSGT00940000157044
Marmotini	ANCESTRAL SPECIES	3	ENSGT01030000234627.a.a.c #7	ENSGT00390000015880 #8	ENSGT00940000162095 #9	ENSGT00940000154762.a.b #10	ENSGT00530000063975 #11	ENSGT00390000009243 #12	ENSGT00940000156345 #13	ENSGT00940000155414 #14	ENSGT00390000006821 #15	ENSGT00550000075050 #16	ENSGT00940000159426 #17	ENSGT00940000159414 #18	ENSGT00940000160349 #19	ENSGT00940000160014 #20	ENSGT00940000162266 #21	ENSGT00940000157317 #22	ENSGT00390000006208.a #23	ENSGT00940000167689	ENSGT00940000154823 #25	ENSGT00940000156014 #27	ENSGT00940000159212.a #28	ENSGT00510000047059.l #29	ENSGT00390000008135 #30	ENSGT00940000153883.b #31	ENSGT00940000154540.a #32	ENSGT00940000161327 #33	ENSGT00390000006030.d.a.b #34	ENSGT00390000014189 #35	ENSGT00950000183122.B #36	ENSGT00390000001752 #37	ENSGT00940000157044
Alpin marmot	MODERN SPECIES	28	BUD23 (ENSMMMG00000009092)	STX1A (ENSMMMG00000009072) #7	ABHD11 (ENSMMMG00000009063) #8	CLDN3 (ENSMMMG00000009059) #9	CLDN4 (ENSMMMG00000009056) #10	METTL27 (ENSMMMG00000008950) #11	TMEM270 (ENSMMMG00000008933) #12	LIMK1 (ENSMMMG00000008892) #13	EIF4H (ENSMMMG00000008869) #14	RFC2 (ENSMMMG00000008843) #16	CLIP2 (ENSMMMG00000008784) #17	GTF2IRD1 (ENSMMMG00000008400) #18	GTF2I (ENSMMMG00000005614) #19	NCF1 (ENSMMMG00000005562) #20	ENSMMMG00000005542 #21	RCC1L (ENSMMMG00000005521) #22	CASTOR2 (ENSMMMG00000005489) #23	ENSMMMG00000005481	AUTS2 (ENSMMMG00000005450) #25	GALNT17 (ENSMMMG00000005419) #27	CALN1 (ENSMMMG00000005387) #28	ENSMMMG00000005327 #29	SBDS (ENSMMMG00000005316) #30	TMEM248 (ENSMMMG00000005293) #31	RABGEF1 (ENSMMMG00000005256) #32	KCTD7 (ENSMMMG00000005245) #33	ENSMMMG00000005238	ENSMMMG00000005237 #34	CRCP (ENSMMMG00000005210) #35	ASL (ENSMMMG00000005192) #36	GUSB (ENSMMMG00000004376) #37
Marmotini_b	ANCESTRAL SPECIES	1	ENSGT01030000234627.a.a.c #7	ENSGT00390000015880 #8	ENSGT00940000162095 #9	ENSGT00940000154762.a.b #10	ENSGT00530000063975 #11	ENSGT00390000009243 #12	ENSGT00940000156345 #13	ENSGT00940000155414 #14	ENSGT00390000006821 #15	ENSGT00550000075050 #16	ENSGT00940000159426 #17	ENSGT00940000159414 #18	ENSGT00940000160349 #19	ENSGT00940000160014 #20	ENSGT00940000162266 #21	ENSGT00940000157317 #22	ENSGT00390000006208.a #23	ENSGT00940000154823 #25	ENSGT00940000156014 #27	ENSGT00940000159212.a #28	ENSGT00510000047059.l #29	ENSGT00390000008135 #30	ENSGT00940000153883.b #31	ENSGT00940000154540.a #32	ENSGT00940000161327 #33	ENSGT00390000006030.d.a.b #34	ENSGT00390000014189 #35	ENSGT00950000183122.B #36	ENSGT00390000001752 #37	ENSGT00940000157044	ENSGT00530000064242.b
Squirrel	MODERN SPECIES	143	ABHD11 (ENSSTOG00000007711) #8	CLDN3 (ENSSTOG00000025193) #9	CLDN4 (ENSSTOG00000020536) #10	METTL27 (ENSSTOG00000021502) #11	TMEM270 (ENSSTOG00000014579) #12	LIMK1 (ENSSTOG00000012798) #13	EIF4H (ENSSTOG00000020777) #14	ENSSTOG00000034812 #15	RFC2 (ENSSTOG00000026992) #16	CLIP2 (ENSSTOG00000020754) #17	GTF2IRD1 (ENSSTOG00000014343) #18	ENSSTOG00000033789	GTF2I (ENSSTOG00000009641) #19	NCF1 (ENSSTOG00000006420) #20	ENSSTOG00000032504 #21	RCC1L (ENSSTOG00000014118) #22	CASTOR2 (ENSSTOG00000020649) #23	ENSSTOG00000031454 #25	GALNT17 (ENSSTOG00000009496) #27	CALN1 (ENSSTOG00000013753) #28	ENSSTOG00000004067 #29	ENSSTOG00000022203 #30	TMEM248 (ENSSTOG00000029043) #31	RABGEF1 (ENSSTOG00000003192) #32	TPST1 (ENSSTOG00000028499) #34	CRCP (ENSSTOG00000008885) #35	ASL (ENSSTOG00000020066) #36	GUSB (ENSSTOG00000008865) #37	VKORC1L1 (ENSSTOG00000008857)	NUPR2 (ENSSTOG00000000064)	CHCHD2 (ENSSTOG00000010512)
Arctic ground squirrel	MODERN SPECIES	176	ABHD11 (ENSUPAG00010000333) #8	CLDN3 (ENSUPAG00010000350) #9	CLDN4 (ENSUPAG00010000359) #10	METTL27 (ENSUPAG00010000370) #11	TMEM270 (ENSUPAG00010000473) #12	LIMK1 (ENSUPAG00010000563) #13	EIF4H (ENSUPAG00010000621) #14	ENSUPAG00010000676 #15	RFC2 (ENSUPAG00010000692) #16	CLIP2 (ENSUPAG00010000723) #17	GTF2IRD1 (ENSUPAG00010000788) #18	ENSUPAG00010001832	GTF2I (ENSUPAG00010001864) #19	NCF1 (ENSUPAG00010004896) #20	ENSUPAG00010004921 #21	RCC1L (ENSUPAG00010004931) #22	CASTOR2 (ENSUPAG00010004951) #23
Eurasian red squirrel	MODERN SPECIES	9	ABHD11 (ENSSVLG00005022951) #8	CLDN3 (ENSSVLG00005023122) #9	CLDN4 (ENSSVLG00005023138) #10	METTL27 (ENSSVLG00005023181) #11	TMEM270 (ENSSVLG00005023251) #12	ELN (ENSSVLG00005023350)	LIMK1 (ENSSVLG00005023428) #13	EIF4H (ENSSVLG00005023644) #14	ENSSVLG00005023686 #15	RFC2 (ENSSVLG00005023739) #16	CLIP2 (ENSSVLG00005023830) #17	GTF2IRD1 (ENSSVLG00005023920) #18	GTF2I (ENSSVLG00005024130) #19	NCF1 (ENSSVLG00005024194) #20	ENSSVLG00005024253 #21	RCC1L (ENSSVLG00005024314) #22	CASTOR2 (ENSSVLG00005024427) #23	ENSSVLG00005024452	ENSSVLG00005024475	AUTS2 (ENSSVLG00005024586) #25	GALNT17 (ENSSVLG00005024896) #27	CALN1 (ENSSVLG00005024933) #28	ENSSVLG00005025043 #29	SBDS (ENSSVLG00005025138) #30	TMEM248 (ENSSVLG00005025151) #31	ENSSVLG00005025168 #32	KCTD7 (ENSSVLG00005025205) #33	TPST1 (ENSSVLG00005025234) #34	CRCP (ENSSVLG00005025255) #35	ASL (ENSSVLG00005010242) #36	GUSB (ENSSVLG00005010427) #37