Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000162095	ENSGT00940000154762.a.b	ENSGT00530000063975	ENSGT00390000009243	ENSGT00730000111510 #9	ENSGT00940000156345 #10	ENSGT00940000155414 #11	ENSGT00390000006821 #12	ENSGT00550000075050 #13	ENSGT00940000163436.n.b #15	ENSGT00940000159426 #16	ENSGT00940000159414 #18	ENSGT00940000160349 #19	ENSGT00940000160014 #20	ENSGT00940000162266 #21	ENSGT00940000157317 #22	ENSGT00390000006208.a #24	ENSGT00940000154823	ENSGT00940000156014	ENSGT00940000159212.a	ENSGT01080000259406	ENSGT00510000047059.l	ENSGT00390000008135	ENSGT00940000153883.b	ENSGT00940000154540.a	ENSGT00940000161327	ENSGT00390000006030.d.a.b	ENSGT00390000014189	ENSGT00950000183122.B	ENSGT00390000001752	ENSGT00940000157044
Mus_B	ANCESTRAL SPECIES	4	ENSGT00940000162095	ENSGT00940000154762.a.b	ENSGT00530000063975	ENSGT00390000009243	ENSGT00730000111510 #9	ENSGT00940000156345 #10	ENSGT00940000155414 #11	ENSGT00390000006821 #12	ENSGT00550000075050 #13	ENSGT00940000163436.n.b #15	ENSGT00940000159426 #16	ENSGT00940000159414 #18	ENSGT00940000160349 #19	ENSGT00940000160014 #20	ENSGT00940000162266 #21	ENSGT00940000157317 #22	ENSGT00390000006208.a #24	ENSGT00940000154823	ENSGT00940000156014	ENSGT00940000159212.a	ENSGT00510000047059.l	ENSGT00390000008135	ENSGT00940000153883.b	ENSGT00940000154540.a	ENSGT00940000161327	ENSGT00390000006030.d.a.b	ENSGT00390000014189	ENSGT00950000183122.B	ENSGT00390000001752	ENSGT00940000157044	ENSGT00530000064242.b
Mus_C	ANCESTRAL SPECIES	4	ENSGT00940000162095	ENSGT00940000154762.a.b	ENSGT00530000063975	ENSGT00390000009243	ENSGT00730000111510 #9	ENSGT00940000156345 #10	ENSGT00940000155414 #11	ENSGT00390000006821 #12	ENSGT00550000075050 #13	ENSGT00940000163436.n.b #15	ENSGT00940000159426 #16	ENSGT00940000159414 #18	ENSGT00940000160349 #19	ENSGT00940000160014 #20	ENSGT00940000162266 #21	ENSGT00940000157317 #22	ENSGT00390000006208.a #24	ENSGT00940000154823	ENSGT00940000156014	ENSGT00940000159212.a	ENSGT01080000259529	ENSGT00510000047059.l	ENSGT00390000008135.y	ENSGT00940000153883.b	ENSGT00940000154540.a	ENSGT00940000161327	ENSGT00390000006030.d.a.b	ENSGT00390000014189	ENSGT00950000183122.B	ENSGT00390000001752	ENSGT00940000157044
Steppe mouse	MODERN SPECIES	3078			Eln (ENSMSIG00000017355) #9	Limk1 (ENSMSIG00000017536) #10	ENSMSIG00000017688 #11	Lat2 (ENSMSIG00000017724) #12	Rfc2 (ENSMSIG00000017808) #13	ENSMSIG00000017829 #14	Syna (ENSMSIG00000017841) #15	Clip2 (ENSMSIG00000017848) #16	ENSMSIG00000017890 #17	Gtf2ird1 (ENSMSIG00000017905) #18	Gtf2i (ENSMSIG00000018304) #19	Ncf1 (ENSMSIG00000019838) #20	Gtf2ird2 (ENSMSIG00000019862) #21	Rcc1l (ENSMSIG00000019888) #22	ENSMSIG00000019903 #23	Castor2 (ENSMSIG00000019905) #24
spretus	MODERN SPECIES	14	Cldn4 (MGP_SPRETEiJ_G0028820)	Mettl27 (MGP_SPRETEiJ_G0028819)	Cldn13 (MGP_SPRETEiJ_G0028818)	Tmem270 (MGP_SPRETEiJ_G0028817)	Eln (MGP_SPRETEiJ_G0028816) #9	Limk1 (MGP_SPRETEiJ_G0028815) #10	Eif4h (MGP_SPRETEiJ_G0028814) #11	Lat2 (MGP_SPRETEiJ_G0028813) #12	Rfc2 (MGP_SPRETEiJ_G0028812) #13	Syna (MGP_SPRETEiJ_G0028811) #15	Clip2 (MGP_SPRETEiJ_G0028810) #16	Gtf2ird1 (MGP_SPRETEiJ_G0028809) #18	Gtf2i (MGP_SPRETEiJ_G0028808) #19	Ncf1 (MGP_SPRETEiJ_G0028807) #20	Gtf2ird2 (MGP_SPRETEiJ_G0028806) #21	Rcc1l (MGP_SPRETEiJ_G0028805) #22	Castor2 (MGP_SPRETEiJ_G0028804) #24	Auts2 (MGP_SPRETEiJ_G0028803)	Galnt17 (MGP_SPRETEiJ_G0028802)	MGP_SPRETEiJ_G0028801	Caln1 (MGP_SPRETEiJ_G0028800)	Tyw1 (MGP_SPRETEiJ_G0028799)	Sbds (MGP_SPRETEiJ_G0028798)	Tmem248 (MGP_SPRETEiJ_G0028797)	Rabgef1 (MGP_SPRETEiJ_G0028796)	Kctd7 (MGP_SPRETEiJ_G0028795)	Tpst1 (MGP_SPRETEiJ_G0028794)	Crcp (MGP_SPRETEiJ_G0028793)	Asl (MGP_SPRETEiJ_G0028792)	Gusb (MGP_SPRETEiJ_G0028791)	Vkorc1l1 (MGP_SPRETEiJ_G0028790)
Mouse	MODERN SPECIES	14	Cldn4 (ENSMUSG00000047501)	Mettl27 (ENSMUSG00000040557)	Cldn13 (ENSMUSG00000008843)	Tmem270 (ENSMUSG00000040576)	Eln (ENSMUSG00000029675) #9	Limk1 (ENSMUSG00000029674) #10	Eif4h (ENSMUSG00000040731) #11	Lat2 (ENSMUSG00000040751) #12	Rfc2 (ENSMUSG00000023104) #13	Syna (ENSMUSG00000085957) #15	Clip2 (ENSMUSG00000063146) #16	Gtf2ird1 (ENSMUSG00000023079) #18	Gtf2i (ENSMUSG00000060261) #19	Ncf1 (ENSMUSG00000015950) #20	Gtf2ird2 (ENSMUSG00000015942) #21	Rcc1l (ENSMUSG00000061979) #22	Castor2 (ENSMUSG00000015944) #24	Auts2 (ENSMUSG00000029673)	Galnt17 (ENSMUSG00000034040)	Caln1 (ENSMUSG00000060371)	Tyw1 (ENSMUSG00000056310)	Sbds (ENSMUSG00000025337)	Tmem248 (ENSMUSG00000053094)	Rabgef1 (ENSMUSG00000025340)	Kctd7 (ENSMUSG00000034110)	Tpst1 (ENSMUSG00000034118)	Crcp (ENSMUSG00000025532)	Asl (ENSMUSG00000025533)	Gusb (ENSMUSG00000025534)	Vkorc1l1 (ENSMUSG00000066735)	Nupr1l (ENSMUSG00000095789)
Ryukyu mouse	MODERN SPECIES	14	Cldn3 (MGP_CAROLIEiJ_G0027822)	Cldn4 (MGP_CAROLIEiJ_G0027821)	Cldn13 (MGP_CAROLIEiJ_G0027820)	Tmem270 (MGP_CAROLIEiJ_G0027819)	Eln (MGP_CAROLIEiJ_G0027818) #9	Limk1 (MGP_CAROLIEiJ_G0027817) #10	Eif4h (MGP_CAROLIEiJ_G0027816) #11	Lat2 (MGP_CAROLIEiJ_G0027815) #12	Rfc2 (MGP_CAROLIEiJ_G0027814) #13	Syna (MGP_CAROLIEiJ_G0027813) #15	Clip2 (MGP_CAROLIEiJ_G0027812) #16	Gtf2ird1 (MGP_CAROLIEiJ_G0027811) #18	Gtf2i (MGP_CAROLIEiJ_G0027810) #19	Ncf1 (MGP_CAROLIEiJ_G0027809) #20	Gtf2ird2 (MGP_CAROLIEiJ_G0027808) #21	Rcc1l (MGP_CAROLIEiJ_G0027807) #22	Castor2 (MGP_CAROLIEiJ_G0027806) #24	Auts2 (MGP_CAROLIEiJ_G0027805)	Galnt17 (MGP_CAROLIEiJ_G0027804)	MGP_CAROLIEiJ_G0027803	Caln1 (MGP_CAROLIEiJ_G0027802)	Tyw1 (MGP_CAROLIEiJ_G0027801)	Sbds (MGP_CAROLIEiJ_G0027800)	Tmem248 (MGP_CAROLIEiJ_G0027799)	Rabgef1 (MGP_CAROLIEiJ_G0027798)	Kctd7 (MGP_CAROLIEiJ_G0027797)	Tpst1 (MGP_CAROLIEiJ_G0027796)	Crcp (MGP_CAROLIEiJ_G0027795)	Asl (MGP_CAROLIEiJ_G0027794)	Gusb (MGP_CAROLIEiJ_G0027793)	Vkorc1l1 (MGP_CAROLIEiJ_G0027792)