Bovidae	ANCESTRAL SPECIES	1	ENSGT00530000063408.B #7	ENSGT00940000154284.a #8	ENSGT00940000155667 #9	ENSGT00940000157555.a #10	ENSGT00940000157555.b #11	ENSGT00940000160416 #12	ENSGT00940000154682.C #13	ENSGT00940000161548 #14	ENSGT00530000063497.b #15	ENSGT00940000162448 #16	ENSGT00390000017201 #18	ENSGT00940000155151.b #19	ENSGT01000000215412	ENSGT00940000157892 #20	ENSGT00490000043442 #21	ENSGT00390000017398 #22	ENSGT01030000234635.a.a.a.a #23	ENSGT00940000156924 #24	ENSGT00950000183036.a.a #25	ENSGT00950000183036.a.b ##25	ENSGT01050000244941.B.d	ENSGT00390000007688	ENSGT00390000012891	ENSGT00390000003298	ENSGT01100000263525.a.b.b.c.b	ENSGT00940000153231.B	ENSGT00390000002634.b	ENSGT00940000153229.B	ENSGT00910000147804	ENSGT00530000063936.b	ENSGT00940000163788
Bovinae	ANCESTRAL SPECIES	1	ENSGT00530000063408.B #7	ENSGT00940000154284.a #8	ENSGT00940000155667 #9	ENSGT00940000157555.a #10	ENSGT00940000157555.b #11	ENSGT00940000160416 #12	ENSGT00940000154682.C #13	ENSGT00940000161548 #14	ENSGT00530000063497.b #15	ENSGT00940000162448 #16	ENSGT00390000017201 #18	ENSGT00940000155151.b #19	ENSGT01000000215412	ENSGT00940000157892 #20	ENSGT00490000043442 #21	ENSGT00390000017398 #22	ENSGT01030000234635.a.a.a.a #23	ENSGT00940000156924 #24	ENSGT00950000183036.a.a #25	ENSGT00950000183036.a.b ##25	ENSGT01050000244941.B.d	ENSGT00390000007688	ENSGT00390000012891	ENSGT00390000003298	ENSGT01100000263525.a.b.b.c.b	ENSGT00940000153231.B	ENSGT00390000002634.b	ENSGT00940000153229.B	ENSGT00910000147804	ENSGT00530000063936.b	ENSGT00940000163788
Bos	ANCESTRAL SPECIES		ENSGT00530000063408.B #7	ENSGT00940000154284.a #8	ENSGT00940000155667 #9	ENSGT00940000157555.a #10	ENSGT00940000157555.b #11	ENSGT00940000160416 #12	ENSGT00940000154682.C #13	ENSGT00940000161548 #14	ENSGT00530000063497.b #15	ENSGT00940000162448 #16	ENSGT00390000017201 #18	ENSGT00940000155151.b #19	ENSGT01000000215412	ENSGT00940000157892 #20	ENSGT00490000043442 #21	ENSGT00390000017398 #22	ENSGT01030000234635.a.a.a.a #23	ENSGT00940000156924 #24	ENSGT00950000183036.a.a #25	ENSGT00950000183036.a.b ##25	ENSGT01050000244941.B.d	ENSGT00390000007688	ENSGT00390000012891	ENSGT00390000003298	ENSGT01100000263525.a.b.b.c.b	ENSGT00940000153231.B	ENSGT00390000002634.b	ENSGT00940000153229.B	ENSGT00910000147804	ENSGT00530000063936.b	ENSGT00940000163788
Bos_a	ANCESTRAL SPECIES	1	ENSGT00530000063408.B #7	ENSGT00940000154284.a #8	ENSGT00940000155667 #9	ENSGT00940000157555.a #10	ENSGT00940000157555.b #11	ENSGT00940000160416 #12	ENSGT00940000154682.C #13	ENSGT00940000161548 #14	ENSGT00530000063497.b #15	ENSGT00940000162448 #16	ENSGT00390000017201 #18	ENSGT00940000155151.b #19	ENSGT01000000215412	ENSGT00940000157892 #20	ENSGT00490000043442 #21	ENSGT00390000017398 #22	ENSGT01030000234635.a.a.a.a #23	ENSGT00940000156924 #24	ENSGT00950000183036.a.a #25	ENSGT00950000183036.a.b ##25	ENSGT01050000244941.B.d	ENSGT00390000007688	ENSGT00390000012891	ENSGT00390000003298	ENSGT01100000263525.a.b.b.c.b	ENSGT00940000153231.B	ENSGT00390000002634.b	ENSGT00940000153229.B	ENSGT00530000063936.b	ENSGT00940000161169	ENSGT00940000159078
Wild yak	MODERN SPECIES	151	HS2ST1 (ENSBMUG00000017400) #7	SELENOF (ENSBMUG00000017480) #8	SH3GLB1 (ENSBMUG00000017608) #9	ENSBMUG00000017730 #10	ENSBMUG00000017762 #11	CLCA4 (ENSBMUG00000017782) #12	CLCA1 (ENSBMUG00000017812) #13	CLCA2 (ENSBMUG00000017843) #14	ODF2L (ENSBMUG00000017919) #15	COL24A1 (ENSBMUG00000017985) #16	ENSBMUG00000018023 #17	ZNHIT6 (ENSBMUG00000018058) #18	CCN1 (ENSBMUG00000018082) #19	DDAH1 (ENSBMUG00000018146) #20	BCL10 (ENSBMUG00000018176) #21	C1orf52 (ENSBMUG00000018196) #22	SYDE2 (ENSBMUG00000018219) #23	DNAI3 (ENSBMUG00000018237) #24	MCOLN3 (ENSBMUG00000018289) #25
Domestic yak	MODERN SPECIES	22	SELENOF (ENSBGRG00000004000) #8	SH3GLB1 (ENSBGRG00000004071) #9	ENSBGRG00000004351 #11	CLCA4 (ENSBGRG00000004774) #12	CLCA1 (ENSBGRG00000006534) #13	CLCA2 (ENSBGRG00000006661) #14	ENSBGRG00000006706	ODF2L (ENSBGRG00000006729) #15	COL24A1 (ENSBGRG00000006871) #16	ENSBGRG00000000235 #17	ZNHIT6 (ENSBGRG00000000263) #18	CCN1 (ENSBGRG00000000313) #19	ENSBGRG00000000337	DDAH1 (ENSBGRG00000000347) #20	BCL10 (ENSBGRG00000000384) #21	C1orf52 (ENSBGRG00000000411) #22	SYDE2 (ENSBGRG00000000456) #23	DNAI3 (ENSBGRG00000000494) #24	MCOLN3 (ENSBGRG00000000709) #25	MCOLN2 (ENSBGRG00000000755) ##25	ENSBGRG00000000797	LPAR3 (ENSBGRG00000000803)	SSX2IP (ENSBGRG00000000833)	CTBS (ENSBGRG00000000887)	SPATA1 (ENSBGRG00000000917)	ENSBGRG00000000963	RPF1 (ENSBGRG00000000983)	ENSBGRG00000001021	DNASE2B (ENSBGRG00000001063)	ENSBGRG00000001096	PRKACB (ENSBGRG00000001167)
Bos_b	ANCESTRAL SPECIES	1	ENSGT00940000154284.a #8	ENSGT00940000155667 #9	ENSGT01100000263480.a.a.b.a.a.a.b.a.a.a.b.b.b.b.a.b.a.b.a.a	ENSGT00940000157555.a #10	ENSGT00940000157555.b #11	ENSGT00940000160416 #12	ENSGT00940000154682.C #13	ENSGT00940000161548 #14	ENSGT00530000063497.b #15	ENSGT00940000162448 #16	ENSGT00390000017201 #18	ENSGT00940000155151.b #19	ENSGT01000000215412	ENSGT00940000157892 #20	ENSGT00490000043442 #21	ENSGT00390000017398 #22	ENSGT01030000234635.a.a.a.a #23	ENSGT00940000156924 #24	ENSGT00950000183036.a.a #25	ENSGT00950000183036.a.b ##25	ENSGT01050000244941.B.d	ENSGT00390000007688	ENSGT00390000012891	ENSGT00390000003298	ENSGT01100000263525.a.b.b.c.b	ENSGT00940000153231.B	ENSGT00390000002634.b	ENSGT00940000153229.B	ENSGT00910000147804	ENSGT00530000063936.b	ENSGT00940000163788
Hybrid Bos Indicus	MODERN SPECIES	22	SH3GLB1 (ENSBIXG00005029220) #9	ENSBIXG00005001721	ENSBIXG00005001767 #11	ENSBIXG00005029153 #10	CLCA4 (ENSBIXG00005029144) #12	CLCA1 (ENSBIXG00005005168) #13	CLCA2 (ENSBIXG00005029083) #14	ENSBIXG00005001995	ODF2L (ENSBIXG00005005132) #15	COL24A1 (ENSBIXG00005028988) #16	ZNHIT6 (ENSBIXG00005002133) #18	CCN1 (ENSBIXG00005028896) #19	ENSBIXG00005002260	DDAH1 (ENSBIXG00005002285) #20	BCL10 (ENSBIXG00005028824) #21	C1orf52 (ENSBIXG00005006646) #22	SYDE2 (ENSBIXG00005028777) #23	DNAI3 (ENSBIXG00005028759) #24	ENSBIXG00005028687	MCOLN3 (ENSBIXG00005028662) #25	MCOLN2 (ENSBIXG00005028583) ##25	LPAR3 (ENSBIXG00005028548)	SSX2IP (ENSBIXG00005028521)	CTBS (ENSBIXG00005028483)	SPATA1 (ENSBIXG00005028480)	ENSBIXG00005028437	ENSBIXG00005004893	RPF1 (ENSBIXG00005028403)	ENSBIXG00005028353	DNASE2B (ENSBIXG00005004867)	ENSBIXG00005028288
Cow	MODERN SPECIES	22	HS2ST1 (ENSBTAG00000017595) #7	SELENOF (ENSBTAG00000052268) #8	SH3GLB1 (ENSBTAG00000031171) #9	ENSBTAG00000051311	ENSBTAG00000021501 #10	CLCA3 (ENSBTAG00000016712) #11	CLCA4 (ENSBTAG00000017357) #12	CLCA1 (ENSBTAG00000008161) #13	CLCA2 (ENSBTAG00000038215) #14	ODF2L (ENSBTAG00000012907) #15	ENSBTAG00000048312 #16	ZNHIT6 (ENSBTAG00000021051) #18	CCN1 (ENSBTAG00000009844) #19	DDAH1 (ENSBTAG00000034776) #20	BCL10 (ENSBTAG00000013851) #21	C3H1orf52 (ENSBTAG00000016326) #22	SYDE2 (ENSBTAG00000003444) #23	DNAI3 (ENSBTAG00000013778) #24	MCOLN3 (ENSBTAG00000016982) #25	MCOLN2 (ENSBTAG00000046773) ##25	LPAR3 (ENSBTAG00000003791)	SSX2IP (ENSBTAG00000018942)	CTBS (ENSBTAG00000005782)	SPATA1 (ENSBTAG00000020010)	GNG5 (ENSBTAG00000008122)	RPF1 (ENSBTAG00000008118)	UOX (ENSBTAG00000024255)	DNASE2B (ENSBTAG00000010445)	ENSBTAG00000053100	SAMD13 (ENSBTAG00000053482)	SAMD13 (ENSBTAG00000007724)
American bison	MODERN SPECIES	3325	HS2ST1 (ENSBBBG00000006101) #7	SELENOF (ENSBBBG00000008413) #8	SH3GLB1 (ENSBBBG00000007287) #9	ENSBBBG00000023469 #10	ENSBBBG00000008313 #11	CLCA4 (ENSBBBG00000023614) #12	CLCA1 (ENSBBBG00000006178) #13	CLCA2 (ENSBBBG00000023667) #14	ODF2L (ENSBBBG00000023750) #15	COL24A1 (ENSBBBG00000007290) #16	ZNHIT6 (ENSBBBG00000006216) #18	CCN1 (ENSBBBG00000023910) #19	ENSBBBG00000023925	DDAH1 (ENSBBBG00000023962) #20	BCL10 (ENSBBBG00000023973) #21	C1orf52 (ENSBBBG00000023979) #22	SYDE2 (ENSBBBG00000008975) #23	DNAI3 (ENSBBBG00000024063) #24	MCOLN3 (ENSBBBG00000024117) #25	MCOLN2 (ENSBBBG00000024164) ##25	LPAR3 (ENSBBBG00000024176)	SSX2IP (ENSBBBG00000008990)	CTBS (ENSBBBG00000024262)	SPATA1 (ENSBBBG00000024290)	ENSBBBG00000024302	RPF1 (ENSBBBG00000008889)	DNASE2B (ENSBBBG00000006341)	ENSBBBG00000006366	SAMD13 (ENSBBBG00000024450)	ENSBBBG00000024455	PRKACB (ENSBBBG00000024703)
Caprinae	ANCESTRAL SPECIES	2	ENSGT00530000063408.B #7	ENSGT00940000154284.a #8	ENSGT00940000155667 #9	ENSGT00940000157555.a #10	ENSGT00940000157555.b #11	ENSGT00940000160416 #12	ENSGT00940000154682.C #13	ENSGT00940000161548 #14	ENSGT00530000063497.b #15	ENSGT00940000162448 #16	ENSGT00390000017201 #18	ENSGT00940000155151.b #19	ENSGT01000000215412	ENSGT00940000157892 #20	ENSGT00490000043442 #21	ENSGT00390000017398 #22	ENSGT01030000234635.a.a.a.a #23	ENSGT00940000156924 #24	ENSGT00950000183036.a.a #25	ENSGT00950000183036.a.b ##25	ENSGT01050000244941.B.d	ENSGT00390000007688	ENSGT00390000012891	ENSGT00390000003298	ENSGT01100000263525.a.b.b.c.b	ENSGT00940000153231.B	ENSGT00390000002634.b	ENSGT00940000153229.B	ENSGT00940000163788	ENSGT00910000147804	ENSGT00530000063936.b
Goat	DUPLICATION
Goat	MODERN SPECIES	22	ENSCHIG00000018965	SH3GLB1 (ENSCHIG00000026662) #9	ENSCHIG00000007867 #10	ENSCHIG00000002248 #11	CLCA4 (ENSCHIG00000021877) #12	CLCA1 (ENSCHIG00000011719) #13	CLCA2 (ENSCHIG00000027130) #14	ODF2L (ENSCHIG00000025854) #15	ENSCHIG00000017228	COL24A1 (ENSCHIG00000020640) #16	ZNHIT6 (ENSCHIG00000020100) #18	CCN1 (ENSCHIG00000027269) #19	ENSCHIG00000011990	DDAH1 (ENSCHIG00000024596) #20	BCL10 (ENSCHIG00000011561) #21	ENSCHIG00000026751 #22	SYDE2 (ENSCHIG00000014781) #23	DNAI3 (ENSCHIG00000017079) #24	MCOLN3 (ENSCHIG00000018773) #25	MCOLN2 (ENSCHIG00000008729) ##25	LPAR3 (ENSCHIG00000017316)	SSX2IP (ENSCHIG00000025764)	CTBS (ENSCHIG00000022826)	SPATA1 (ENSCHIG00000004028)	GNG5 (ENSCHIG00000016183)	ENSCHIG00000012566	DNASE2B (ENSCHIG00000018531)	ENSCHIG00000025541	ENSCHIG00000014514	PRKACB (ENSCHIG00000024391)	TTLL7 (ENSCHIG00000017102)
Goat	MODERN SPECIES	22	ENSCHIG00000009426	ENSCHIG00000016560	ENSCHIG00000010218	CD1D (ENSCHIG00000008779)	ENSCHIG00000012337	KIRREL1 (ENSCHIG00000021405)	ENSCHIG00000027085	ENSCHIG00000015324	ENSCHIG00000014091	ENSCHIG00000019069	FCRL4 (ENSCHIG00000001070)	ENSCHIG00000025439	ENSCHIG00000011451	ETV3 (ENSCHIG00000017949)	ENSCHIG00000023056	ENSCHIG00000009592 #22	ARHGEF11 (ENSCHIG00000025394)	LRRC71 (ENSCHIG00000005840)	PEAR1 (ENSCHIG00000024120)	NTRK1 (ENSCHIG00000023266)	INSRR (ENSCHIG00000020115)	SH2D2A (ENSCHIG00000019998)	PRCC (ENSCHIG00000024652)	HDGF (ENSCHIG00000017076)	MRPL24 (ENSCHIG00000015041)	METTL25B (ENSCHIG00000022856)	ISG20L2 (ENSCHIG00000024024)	CRABP2 (ENSCHIG00000009097)	NES (ENSCHIG00000026388)	BCAN (ENSCHIG00000011650)	HAPLN2 (ENSCHIG00000025407)
Rambouillet Sheep	MODERN SPECIES		ENSOARG00020006050	HS2ST1 (ENSOARG00020005954) #7	SELENOF (ENSOARG00020005902) #8	SH3GLB1 (ENSOARG00020005783) #9	ENSOARG00020003537 #10	ENSOARG00020002384 #11	CLCA4 (ENSOARG00020002227) #12	CLCA1 (ENSOARG00020002201) #13	CLCA2 (ENSOARG00020002169) #14	ODF2L (ENSOARG00020002095) #15	COL24A1 (ENSOARG00020002041) #16	CCN1 (ENSOARG00020001971) #19	DDAH1 (ENSOARG00020001916) #20	ENSOARG00020001899	BCL10 (ENSOARG00020001886) #21	C1orf52 (ENSOARG00020001875) #22	SYDE2 (ENSOARG00020001859) #23	DNAI3 (ENSOARG00020001533) #24	ENSOARG00020001462	MCOLN3 (ENSOARG00020001362) #25	MCOLN2 (ENSOARG00020001324) ##25	LPAR3 (ENSOARG00020001315)	SSX2IP (ENSOARG00020001297)	CTBS (ENSOARG00020001255)	SPATA1 (ENSOARG00020001225)	GNG5 (ENSOARG00020001205)	RPF1 (ENSOARG00020001191)	DNASE2B (ENSOARG00020001163)	ENSOARG00020001133	ENSOARG00020001115	SAMD13 (ENSOARG00020001103)