Bovidae	ANCESTRAL SPECIES	1	ENSGT00530000063408.B	ENSGT00940000154284.a	ENSGT00940000155667 #7	ENSGT00940000157555.a #10	ENSGT00940000157555.b #9	ENSGT00940000160416 #11	ENSGT00940000154682.C #12	ENSGT00940000161548 #13	ENSGT00530000063497.b #15	ENSGT00940000162448 #16	ENSGT00390000017201 #17	ENSGT00940000155151.b #18	ENSGT01000000215412 #19	ENSGT00940000157892 #20	ENSGT00490000043442 #21	ENSGT00390000017398 #22	ENSGT01030000234635.a.a.a.a #23	ENSGT00940000156924 #24	ENSGT00950000183036.a.a #26	ENSGT00950000183036.a.b #27	ENSGT01050000244941.B.d #28	ENSGT00390000007688 #29	ENSGT00390000012891 #30	ENSGT00390000003298 #31	ENSGT01100000263525.a.b.b.c.b #33	ENSGT00940000153231.B #34	ENSGT00390000002634.b #36	ENSGT00940000153229.B #35	ENSGT00910000147804	ENSGT00530000063936.b #37	ENSGT00940000163788
Bovinae	ANCESTRAL SPECIES	1	ENSGT00530000063408.B	ENSGT00940000154284.a	ENSGT00940000155667 #7	ENSGT00940000157555.a #10	ENSGT00940000157555.b #9	ENSGT00940000160416 #11	ENSGT00940000154682.C #12	ENSGT00940000161548 #13	ENSGT00530000063497.b #15	ENSGT00940000162448 #16	ENSGT00390000017201 #17	ENSGT00940000155151.b #18	ENSGT01000000215412 #19	ENSGT00940000157892 #20	ENSGT00490000043442 #21	ENSGT00390000017398 #22	ENSGT01030000234635.a.a.a.a #23	ENSGT00940000156924 #24	ENSGT00950000183036.a.a #26	ENSGT00950000183036.a.b #27	ENSGT01050000244941.B.d #28	ENSGT00390000007688 #29	ENSGT00390000012891 #30	ENSGT00390000003298 #31	ENSGT01100000263525.a.b.b.c.b #33	ENSGT00940000153231.B #34	ENSGT00390000002634.b #36	ENSGT00940000153229.B #35	ENSGT00910000147804	ENSGT00530000063936.b #37	ENSGT00940000163788
Bos	ANCESTRAL SPECIES		ENSGT00530000063408.B	ENSGT00940000154284.a	ENSGT00940000155667 #7	ENSGT00940000157555.a #10	ENSGT00940000157555.b #9	ENSGT00940000160416 #11	ENSGT00940000154682.C #12	ENSGT00940000161548 #13	ENSGT00530000063497.b #15	ENSGT00940000162448 #16	ENSGT00390000017201 #17	ENSGT00940000155151.b #18	ENSGT01000000215412 #19	ENSGT00940000157892 #20	ENSGT00490000043442 #21	ENSGT00390000017398 #22	ENSGT01030000234635.a.a.a.a #23	ENSGT00940000156924 #24	ENSGT00950000183036.a.a #26	ENSGT00950000183036.a.b #27	ENSGT01050000244941.B.d #28	ENSGT00390000007688 #29	ENSGT00390000012891 #30	ENSGT00390000003298 #31	ENSGT01100000263525.a.b.b.c.b #33	ENSGT00940000153231.B #34	ENSGT00390000002634.b #36	ENSGT00940000153229.B #35	ENSGT00910000147804	ENSGT00530000063936.b #37	ENSGT00940000163788
Bos_b	ANCESTRAL SPECIES	1	ENSGT00940000154284.a	ENSGT00940000155667 #7	ENSGT01100000263480.a.a.b.a.a.a.b.a.a.a.b.b.b.b.a.b.a.b.a.a #8	ENSGT00940000157555.a #10	ENSGT00940000157555.b #9	ENSGT00940000160416 #11	ENSGT00940000154682.C #12	ENSGT00940000161548 #13	ENSGT00530000063497.b #15	ENSGT00940000162448 #16	ENSGT00390000017201 #17	ENSGT00940000155151.b #18	ENSGT01000000215412 #19	ENSGT00940000157892 #20	ENSGT00490000043442 #21	ENSGT00390000017398 #22	ENSGT01030000234635.a.a.a.a #23	ENSGT00940000156924 #24	ENSGT00950000183036.a.a #26	ENSGT00950000183036.a.b #27	ENSGT01050000244941.B.d #28	ENSGT00390000007688 #29	ENSGT00390000012891 #30	ENSGT00390000003298 #31	ENSGT01100000263525.a.b.b.c.b #33	ENSGT00940000153231.B #34	ENSGT00390000002634.b #36	ENSGT00940000153229.B #35	ENSGT00910000147804	ENSGT00530000063936.b #37	ENSGT00940000163788
Hybrid Bos Indicus	MODERN SPECIES	22	SH3GLB1 (ENSBIXG00005029220) #7	ENSBIXG00005001721 #8	ENSBIXG00005001767 #9	ENSBIXG00005029153 #10	CLCA4 (ENSBIXG00005029144) #11	CLCA1 (ENSBIXG00005005168) #12	CLCA2 (ENSBIXG00005029083) #13	ENSBIXG00005001995 #14	ODF2L (ENSBIXG00005005132) #15	COL24A1 (ENSBIXG00005028988) #16	ZNHIT6 (ENSBIXG00005002133) #17	CCN1 (ENSBIXG00005028896) #18	ENSBIXG00005002260 #19	DDAH1 (ENSBIXG00005002285) #20	BCL10 (ENSBIXG00005028824) #21	C1orf52 (ENSBIXG00005006646) #22	SYDE2 (ENSBIXG00005028777) #23	DNAI3 (ENSBIXG00005028759) #24	ENSBIXG00005028687 #25	MCOLN3 (ENSBIXG00005028662) #26	MCOLN2 (ENSBIXG00005028583) #27	LPAR3 (ENSBIXG00005028548) #28	SSX2IP (ENSBIXG00005028521) #29	CTBS (ENSBIXG00005028483) #30	SPATA1 (ENSBIXG00005028480) #31	ENSBIXG00005028437 #32	ENSBIXG00005004893 #33	RPF1 (ENSBIXG00005028403) #34	ENSBIXG00005028353 #35	DNASE2B (ENSBIXG00005004867) #36	ENSBIXG00005028288 #37
Cow	MODERN SPECIES	22	HS2ST1 (ENSBTAG00000017595)	SELENOF (ENSBTAG00000052268)	SH3GLB1 (ENSBTAG00000031171) #7	ENSBTAG00000051311 #8	ENSBTAG00000021501 #10	CLCA3 (ENSBTAG00000016712) #9	CLCA4 (ENSBTAG00000017357) #11	CLCA1 (ENSBTAG00000008161) #12	CLCA2 (ENSBTAG00000038215) #13	ODF2L (ENSBTAG00000012907) #15	ENSBTAG00000048312 #16	ZNHIT6 (ENSBTAG00000021051) #17	CCN1 (ENSBTAG00000009844) #18	DDAH1 (ENSBTAG00000034776) #20	BCL10 (ENSBTAG00000013851) #21	C3H1orf52 (ENSBTAG00000016326) #22	SYDE2 (ENSBTAG00000003444) #23	DNAI3 (ENSBTAG00000013778) #24	MCOLN3 (ENSBTAG00000016982) #26	MCOLN2 (ENSBTAG00000046773) #27	LPAR3 (ENSBTAG00000003791) #28	SSX2IP (ENSBTAG00000018942) #29	CTBS (ENSBTAG00000005782) #30	SPATA1 (ENSBTAG00000020010) #31	GNG5 (ENSBTAG00000008122) #33	RPF1 (ENSBTAG00000008118) #34	UOX (ENSBTAG00000024255) #35	DNASE2B (ENSBTAG00000010445) #36	ENSBTAG00000053100	SAMD13 (ENSBTAG00000053482) #37	SAMD13 (ENSBTAG00000007724)
Bos_a	ANCESTRAL SPECIES	1	ENSGT00530000063408.B	ENSGT00940000154284.a	ENSGT00940000155667 #7	ENSGT00940000157555.a #10	ENSGT00940000157555.b #9	ENSGT00940000160416 #11	ENSGT00940000154682.C #12	ENSGT00940000161548 #13	ENSGT00530000063497.b #15	ENSGT00940000162448 #16	ENSGT00390000017201 #17	ENSGT00940000155151.b #18	ENSGT01000000215412 #19	ENSGT00940000157892 #20	ENSGT00490000043442 #21	ENSGT00390000017398 #22	ENSGT01030000234635.a.a.a.a #23	ENSGT00940000156924 #24	ENSGT00950000183036.a.a #26	ENSGT00950000183036.a.b #27	ENSGT01050000244941.B.d #28	ENSGT00390000007688 #29	ENSGT00390000012891 #30	ENSGT00390000003298 #31	ENSGT01100000263525.a.b.b.c.b #33	ENSGT00940000153231.B #34	ENSGT00390000002634.b #36	ENSGT00940000153229.B #35	ENSGT00530000063936.b #37	ENSGT00940000161169	ENSGT00940000159078
Domestic yak	MODERN SPECIES	22	SELENOF (ENSBGRG00000004000)	SH3GLB1 (ENSBGRG00000004071) #7	ENSBGRG00000004351 #9	CLCA4 (ENSBGRG00000004774) #11	CLCA1 (ENSBGRG00000006534) #12	CLCA2 (ENSBGRG00000006661) #13	ENSBGRG00000006706 ##32	ODF2L (ENSBGRG00000006729) #15	COL24A1 (ENSBGRG00000006871) #16	ENSBGRG00000000235	ZNHIT6 (ENSBGRG00000000263) #17	CCN1 (ENSBGRG00000000313) #18	ENSBGRG00000000337 #19	DDAH1 (ENSBGRG00000000347) #20	BCL10 (ENSBGRG00000000384) #21	C1orf52 (ENSBGRG00000000411) #22	SYDE2 (ENSBGRG00000000456) #23	DNAI3 (ENSBGRG00000000494) #24	MCOLN3 (ENSBGRG00000000709) #26	MCOLN2 (ENSBGRG00000000755) #27	ENSBGRG00000000797	LPAR3 (ENSBGRG00000000803) #28	SSX2IP (ENSBGRG00000000833) #29	CTBS (ENSBGRG00000000887) #30	SPATA1 (ENSBGRG00000000917) #31	ENSBGRG00000000963 #33	RPF1 (ENSBGRG00000000983) #34	ENSBGRG00000001021 #35	DNASE2B (ENSBGRG00000001063) #36	ENSBGRG00000001096 #37	PRKACB (ENSBGRG00000001167)
Wild yak	MODERN SPECIES	151	HS2ST1 (ENSBMUG00000017400)	SELENOF (ENSBMUG00000017480)	SH3GLB1 (ENSBMUG00000017608) #7	ENSBMUG00000017730 #10	ENSBMUG00000017762 #9	CLCA4 (ENSBMUG00000017782) #11	CLCA1 (ENSBMUG00000017812) #12	CLCA2 (ENSBMUG00000017843) #13	ODF2L (ENSBMUG00000017919) #15	COL24A1 (ENSBMUG00000017985) #16	ENSBMUG00000018023	ZNHIT6 (ENSBMUG00000018058) #17	CCN1 (ENSBMUG00000018082) #18	DDAH1 (ENSBMUG00000018146) #20	BCL10 (ENSBMUG00000018176) #21	C1orf52 (ENSBMUG00000018196) #22	SYDE2 (ENSBMUG00000018219) #23	DNAI3 (ENSBMUG00000018237) #24	MCOLN3 (ENSBMUG00000018289) #26
American bison	MODERN SPECIES	3325	HS2ST1 (ENSBBBG00000006101)	SELENOF (ENSBBBG00000008413)	SH3GLB1 (ENSBBBG00000007287) #7	ENSBBBG00000023469 #10	ENSBBBG00000008313 #9	CLCA4 (ENSBBBG00000023614) #11	CLCA1 (ENSBBBG00000006178) #12	CLCA2 (ENSBBBG00000023667) #13	ODF2L (ENSBBBG00000023750) #15	COL24A1 (ENSBBBG00000007290) #16	ZNHIT6 (ENSBBBG00000006216) #17	CCN1 (ENSBBBG00000023910) #18	ENSBBBG00000023925 #19	DDAH1 (ENSBBBG00000023962) #20	BCL10 (ENSBBBG00000023973) #21	C1orf52 (ENSBBBG00000023979) #22	SYDE2 (ENSBBBG00000008975) #23	DNAI3 (ENSBBBG00000024063) #24	MCOLN3 (ENSBBBG00000024117) #26	MCOLN2 (ENSBBBG00000024164) #27	LPAR3 (ENSBBBG00000024176) #28	SSX2IP (ENSBBBG00000008990) #29	CTBS (ENSBBBG00000024262) #30	SPATA1 (ENSBBBG00000024290) #31	ENSBBBG00000024302 #33	RPF1 (ENSBBBG00000008889) #34	DNASE2B (ENSBBBG00000006341) #36	ENSBBBG00000006366 #35	SAMD13 (ENSBBBG00000024450) #37	ENSBBBG00000024455	PRKACB (ENSBBBG00000024703)
Caprinae	ANCESTRAL SPECIES	2	ENSGT00530000063408.B	ENSGT00940000154284.a	ENSGT00940000155667 #7	ENSGT00940000157555.a #10	ENSGT00940000157555.b #9	ENSGT00940000160416 #11	ENSGT00940000154682.C #12	ENSGT00940000161548 #13	ENSGT00530000063497.b #15	ENSGT00940000162448 #16	ENSGT00390000017201 #17	ENSGT00940000155151.b #18	ENSGT01000000215412 #19	ENSGT00940000157892 #20	ENSGT00490000043442 #21	ENSGT00390000017398 #22	ENSGT01030000234635.a.a.a.a #23	ENSGT00940000156924 #24	ENSGT00950000183036.a.a #26	ENSGT00950000183036.a.b #27	ENSGT01050000244941.B.d #28	ENSGT00390000007688 #29	ENSGT00390000012891 #30	ENSGT00390000003298 #31	ENSGT01100000263525.a.b.b.c.b #33	ENSGT00940000153231.B #34	ENSGT00390000002634.b #36	ENSGT00940000153229.B #35	ENSGT00940000163788	ENSGT00910000147804	ENSGT00530000063936.b #37
Goat	DUPLICATION
Goat	MODERN SPECIES	22	ENSCHIG00000018965	SH3GLB1 (ENSCHIG00000026662) #7	ENSCHIG00000007867 #10	ENSCHIG00000002248 #9	CLCA4 (ENSCHIG00000021877) #11	CLCA1 (ENSCHIG00000011719) #12	CLCA2 (ENSCHIG00000027130) #13	ODF2L (ENSCHIG00000025854) #15	ENSCHIG00000017228	COL24A1 (ENSCHIG00000020640) #16	ZNHIT6 (ENSCHIG00000020100) #17	CCN1 (ENSCHIG00000027269) #18	ENSCHIG00000011990 #19	DDAH1 (ENSCHIG00000024596) #20	BCL10 (ENSCHIG00000011561) #21	ENSCHIG00000026751 #22	SYDE2 (ENSCHIG00000014781) #23	DNAI3 (ENSCHIG00000017079) #24	MCOLN3 (ENSCHIG00000018773) #26	MCOLN2 (ENSCHIG00000008729) #27	LPAR3 (ENSCHIG00000017316) #28	SSX2IP (ENSCHIG00000025764) #29	CTBS (ENSCHIG00000022826) #30	SPATA1 (ENSCHIG00000004028) #31	GNG5 (ENSCHIG00000016183) #33	ENSCHIG00000012566 #34	DNASE2B (ENSCHIG00000018531) #36	ENSCHIG00000025541 #35	ENSCHIG00000014514	PRKACB (ENSCHIG00000024391)	TTLL7 (ENSCHIG00000017102)
Goat	MODERN SPECIES	22	ENSCHIG00000009426	ENSCHIG00000016560	ENSCHIG00000010218	CD1D (ENSCHIG00000008779)	ENSCHIG00000012337	KIRREL1 (ENSCHIG00000021405)	ENSCHIG00000027085	ENSCHIG00000015324	ENSCHIG00000014091	ENSCHIG00000019069	FCRL4 (ENSCHIG00000001070)	ENSCHIG00000025439	ENSCHIG00000011451	ETV3 (ENSCHIG00000017949)	ENSCHIG00000023056	ENSCHIG00000009592 #22	ARHGEF11 (ENSCHIG00000025394)	LRRC71 (ENSCHIG00000005840)	PEAR1 (ENSCHIG00000024120)	NTRK1 (ENSCHIG00000023266)	INSRR (ENSCHIG00000020115)	SH2D2A (ENSCHIG00000019998)	PRCC (ENSCHIG00000024652)	HDGF (ENSCHIG00000017076)	MRPL24 (ENSCHIG00000015041)	METTL25B (ENSCHIG00000022856)	ISG20L2 (ENSCHIG00000024024)	CRABP2 (ENSCHIG00000009097)	NES (ENSCHIG00000026388)	BCAN (ENSCHIG00000011650)	HAPLN2 (ENSCHIG00000025407)
Rambouillet Sheep	MODERN SPECIES		ENSOARG00020006050	HS2ST1 (ENSOARG00020005954)	SELENOF (ENSOARG00020005902)	SH3GLB1 (ENSOARG00020005783) #7	ENSOARG00020003537 #10	ENSOARG00020002384 #9	CLCA4 (ENSOARG00020002227) #11	CLCA1 (ENSOARG00020002201) #12	CLCA2 (ENSOARG00020002169) #13	ODF2L (ENSOARG00020002095) #15	COL24A1 (ENSOARG00020002041) #16	CCN1 (ENSOARG00020001971) #18	DDAH1 (ENSOARG00020001916) #20	ENSOARG00020001899	BCL10 (ENSOARG00020001886) #21	C1orf52 (ENSOARG00020001875) #22	SYDE2 (ENSOARG00020001859) #23	DNAI3 (ENSOARG00020001533) #24	ENSOARG00020001462	MCOLN3 (ENSOARG00020001362) #26	MCOLN2 (ENSOARG00020001324) #27	LPAR3 (ENSOARG00020001315) #28	SSX2IP (ENSOARG00020001297) #29	CTBS (ENSOARG00020001255) #30	SPATA1 (ENSOARG00020001225) #31	GNG5 (ENSOARG00020001205) #33	RPF1 (ENSOARG00020001191) #34	DNASE2B (ENSOARG00020001163) #36	ENSOARG00020001133 #35	ENSOARG00020001115	SAMD13 (ENSOARG00020001103) #37