Pecora	ANCESTRAL SPECIES	2	ENSGT00530000063408.B	ENSGT00940000154284.a	ENSGT00940000155667	ENSGT00940000157555.a #9	ENSGT00940000157555.b #8	ENSGT00940000160416 #10	ENSGT00940000154682.C #12	ENSGT00940000161548 #13	ENSGT00530000063497.b #14	ENSGT00940000162448 #15	ENSGT00390000017201 #16	ENSGT00940000155151.b #17	ENSGT01000000215412 #18	ENSGT00940000157892 #20	ENSGT00490000043442 #21	ENSGT00390000017398 #22	ENSGT01030000234635.a.a.a.a #23	ENSGT00940000156924 #24	ENSGT00950000183036.a.a #25	ENSGT00950000183036.a.b #26	ENSGT01050000244941.B.d #27	ENSGT00390000007688 #28	ENSGT00390000012891 #29	ENSGT00390000003298 #30	ENSGT01100000263525.a.b.b.c.b #31	ENSGT00940000153231.B #32	ENSGT00390000002634.b #33	ENSGT00940000153229.B #34	ENSGT00910000147804	ENSGT00530000063936.b	ENSGT00940000163788 #35
Yarkand deer	MODERN SPECIES	12	ENSCHYG00000017416 #7	ENSCHYG00000017521 #8	ENSCHYG00000017942 #9	CLCA4 (ENSCHYG00000017997) #10	ENSCHYG00000018086 #11	CLCA1 (ENSCHYG00000018130) #12	CLCA2 (ENSCHYG00000018274) #13	ODF2L (ENSCHYG00000018506) #14	COL24A1 (ENSCHYG00000019031) #15	ZNHIT6 (ENSCHYG00000019277) #16	CCN1 (ENSCHYG00000019490) #17	ENSCHYG00000019543 #18	ENSCHYG00000019567 #19	DDAH1 (ENSCHYG00000019587) #20	BCL10 (ENSCHYG00000019711) #21	C1orf52 (ENSCHYG00000019772) #22	SYDE2 (ENSCHYG00000019844) #23	DNAI3 (ENSCHYG00000019958) #24	MCOLN3 (ENSCHYG00000021236) #25	MCOLN2 (ENSCHYG00000021424) #26	LPAR3 (ENSCHYG00000021602) #27	ENSCHYG00000021637 #28	CTBS (ENSCHYG00000021813) #29	SPATA1 (ENSCHYG00000021860) #30	ENSCHYG00000022011 #31	RPF1 (ENSCHYG00000022044) #32	DNASE2B (ENSCHYG00000022151) #33	ENSCHYG00000022258 #34	ENSCHYG00000022387 #35	PRKACB (ENSCHYG00000022683) #36	ENSCHYG00000024821 #37
Percora_a	ANCESTRAL SPECIES	1	ENSGT00530000063408.B	ENSGT00940000154284.a	ENSGT00940000155667	ENSGT00940000157555.a #9	ENSGT00940000157555.b #8	ENSGT00940000160416 #10	ENSGT00940000154682.C #12	ENSGT00940000161548 #13	ENSGT00530000063497.b #14	ENSGT00940000162448 #15	ENSGT00390000017201 #16	ENSGT00940000155151.b #17	ENSGT01000000215412 #18	ENSGT00940000157892 #20	ENSGT00490000043442 #21	ENSGT00390000017398 #22	ENSGT01030000234635.a.a.a.a #23	ENSGT00940000156924 #24	ENSGT00950000183036.a.a #25	ENSGT00950000183036.a.b #26	ENSGT01050000244941.B.d #27	ENSGT00390000007688 #28	ENSGT00390000012891 #29	ENSGT00390000003298 #30	ENSGT01100000263525.a.b.b.c.b #31	ENSGT00940000153231.B #32	ENSGT00390000002634.b #33	ENSGT00940000153229.B #34	ENSGT00910000147804	ENSGT00530000063936.b	ENSGT00940000163788 #35
Bovidae	ANCESTRAL SPECIES	1	ENSGT00530000063408.B	ENSGT00940000154284.a	ENSGT00940000155667	ENSGT00940000157555.a #9	ENSGT00940000157555.b #8	ENSGT00940000160416 #10	ENSGT00940000154682.C #12	ENSGT00940000161548 #13	ENSGT00530000063497.b #14	ENSGT00940000162448 #15	ENSGT00390000017201 #16	ENSGT00940000155151.b #17	ENSGT01000000215412 #18	ENSGT00940000157892 #20	ENSGT00490000043442 #21	ENSGT00390000017398 #22	ENSGT01030000234635.a.a.a.a #23	ENSGT00940000156924 #24	ENSGT00950000183036.a.a #25	ENSGT00950000183036.a.b #26	ENSGT01050000244941.B.d #27	ENSGT00390000007688 #28	ENSGT00390000012891 #29	ENSGT00390000003298 #30	ENSGT01100000263525.a.b.b.c.b #31	ENSGT00940000153231.B #32	ENSGT00390000002634.b #33	ENSGT00940000153229.B #34	ENSGT00910000147804	ENSGT00530000063936.b	ENSGT00940000163788 #35
Caprinae	ANCESTRAL SPECIES	2	ENSGT00530000063408.B	ENSGT00940000154284.a	ENSGT00940000155667	ENSGT00940000157555.a #9	ENSGT00940000157555.b #8	ENSGT00940000160416 #10	ENSGT00940000154682.C #12	ENSGT00940000161548 #13	ENSGT00530000063497.b #14	ENSGT00940000162448 #15	ENSGT00390000017201 #16	ENSGT00940000155151.b #17	ENSGT01000000215412 #18	ENSGT00940000157892 #20	ENSGT00490000043442 #21	ENSGT00390000017398 #22	ENSGT01030000234635.a.a.a.a #23	ENSGT00940000156924 #24	ENSGT00950000183036.a.a #25	ENSGT00950000183036.a.b #26	ENSGT01050000244941.B.d #27	ENSGT00390000007688 #28	ENSGT00390000012891 #29	ENSGT00390000003298 #30	ENSGT01100000263525.a.b.b.c.b #31	ENSGT00940000153231.B #32	ENSGT00390000002634.b #33	ENSGT00940000153229.B #34	ENSGT00940000163788 #35	ENSGT00910000147804	ENSGT00530000063936.b
Goat	DUPLICATION
Goat	MODERN SPECIES	22	ENSCHIG00000018965	SH3GLB1 (ENSCHIG00000026662)	ENSCHIG00000007867 #9	ENSCHIG00000002248 #8	CLCA4 (ENSCHIG00000021877) #10	CLCA1 (ENSCHIG00000011719) #12	CLCA2 (ENSCHIG00000027130) #13	ODF2L (ENSCHIG00000025854) #14	ENSCHIG00000017228	COL24A1 (ENSCHIG00000020640) #15	ZNHIT6 (ENSCHIG00000020100) #16	CCN1 (ENSCHIG00000027269) #17	ENSCHIG00000011990 #18	DDAH1 (ENSCHIG00000024596) #20	BCL10 (ENSCHIG00000011561) #21	ENSCHIG00000026751 #22	SYDE2 (ENSCHIG00000014781) #23	DNAI3 (ENSCHIG00000017079) #24	MCOLN3 (ENSCHIG00000018773) #25	MCOLN2 (ENSCHIG00000008729) #26	LPAR3 (ENSCHIG00000017316) #27	SSX2IP (ENSCHIG00000025764) #28	CTBS (ENSCHIG00000022826) #29	SPATA1 (ENSCHIG00000004028) #30	GNG5 (ENSCHIG00000016183) #31	ENSCHIG00000012566 #32	DNASE2B (ENSCHIG00000018531) #33	ENSCHIG00000025541 #34	ENSCHIG00000014514 #35	PRKACB (ENSCHIG00000024391) #36	TTLL7 (ENSCHIG00000017102)
Goat	MODERN SPECIES	22	ENSCHIG00000009426	ENSCHIG00000016560	ENSCHIG00000010218	CD1D (ENSCHIG00000008779)	ENSCHIG00000012337	KIRREL1 (ENSCHIG00000021405)	ENSCHIG00000027085	ENSCHIG00000015324	ENSCHIG00000014091	ENSCHIG00000019069	FCRL4 (ENSCHIG00000001070)	ENSCHIG00000025439	ENSCHIG00000011451	ETV3 (ENSCHIG00000017949)	ENSCHIG00000023056	ENSCHIG00000009592 #22	ARHGEF11 (ENSCHIG00000025394)	LRRC71 (ENSCHIG00000005840)	PEAR1 (ENSCHIG00000024120)	NTRK1 (ENSCHIG00000023266)	INSRR (ENSCHIG00000020115)	SH2D2A (ENSCHIG00000019998)	PRCC (ENSCHIG00000024652)	HDGF (ENSCHIG00000017076)	MRPL24 (ENSCHIG00000015041)	METTL25B (ENSCHIG00000022856)	ISG20L2 (ENSCHIG00000024024)	CRABP2 (ENSCHIG00000009097)	NES (ENSCHIG00000026388)	BCAN (ENSCHIG00000011650)	HAPLN2 (ENSCHIG00000025407)
Rambouillet Sheep	MODERN SPECIES		ENSOARG00020006050	HS2ST1 (ENSOARG00020005954)	SELENOF (ENSOARG00020005902)	SH3GLB1 (ENSOARG00020005783)	ENSOARG00020003537 #9	ENSOARG00020002384 #8	CLCA4 (ENSOARG00020002227) #10	CLCA1 (ENSOARG00020002201) #12	CLCA2 (ENSOARG00020002169) #13	ODF2L (ENSOARG00020002095) #14	COL24A1 (ENSOARG00020002041) #15	CCN1 (ENSOARG00020001971) #17	DDAH1 (ENSOARG00020001916) #20	ENSOARG00020001899	BCL10 (ENSOARG00020001886) #21	C1orf52 (ENSOARG00020001875) #22	SYDE2 (ENSOARG00020001859) #23	DNAI3 (ENSOARG00020001533) #24	ENSOARG00020001462	MCOLN3 (ENSOARG00020001362) #25	MCOLN2 (ENSOARG00020001324) #26	LPAR3 (ENSOARG00020001315) #27	SSX2IP (ENSOARG00020001297) #28	CTBS (ENSOARG00020001255) #29	SPATA1 (ENSOARG00020001225) #30	GNG5 (ENSOARG00020001205) #31	RPF1 (ENSOARG00020001191) #32	DNASE2B (ENSOARG00020001163) #33	ENSOARG00020001133 #34	ENSOARG00020001115	SAMD13 (ENSOARG00020001103)
Bovinae	ANCESTRAL SPECIES	1	ENSGT00530000063408.B	ENSGT00940000154284.a	ENSGT00940000155667	ENSGT00940000157555.a #9	ENSGT00940000157555.b #8	ENSGT00940000160416 #10	ENSGT00940000154682.C #12	ENSGT00940000161548 #13	ENSGT00530000063497.b #14	ENSGT00940000162448 #15	ENSGT00390000017201 #16	ENSGT00940000155151.b #17	ENSGT01000000215412 #18	ENSGT00940000157892 #20	ENSGT00490000043442 #21	ENSGT00390000017398 #22	ENSGT01030000234635.a.a.a.a #23	ENSGT00940000156924 #24	ENSGT00950000183036.a.a #25	ENSGT00950000183036.a.b #26	ENSGT01050000244941.B.d #27	ENSGT00390000007688 #28	ENSGT00390000012891 #29	ENSGT00390000003298 #30	ENSGT01100000263525.a.b.b.c.b #31	ENSGT00940000153231.B #32	ENSGT00390000002634.b #33	ENSGT00940000153229.B #34	ENSGT00910000147804	ENSGT00530000063936.b	ENSGT00940000163788 #35
American bison	MODERN SPECIES	3325	HS2ST1 (ENSBBBG00000006101)	SELENOF (ENSBBBG00000008413)	SH3GLB1 (ENSBBBG00000007287)	ENSBBBG00000023469 #9	ENSBBBG00000008313 #8	CLCA4 (ENSBBBG00000023614) #10	CLCA1 (ENSBBBG00000006178) #12	CLCA2 (ENSBBBG00000023667) #13	ODF2L (ENSBBBG00000023750) #14	COL24A1 (ENSBBBG00000007290) #15	ZNHIT6 (ENSBBBG00000006216) #16	CCN1 (ENSBBBG00000023910) #17	ENSBBBG00000023925 #18	DDAH1 (ENSBBBG00000023962) #20	BCL10 (ENSBBBG00000023973) #21	C1orf52 (ENSBBBG00000023979) #22	SYDE2 (ENSBBBG00000008975) #23	DNAI3 (ENSBBBG00000024063) #24	MCOLN3 (ENSBBBG00000024117) #25	MCOLN2 (ENSBBBG00000024164) #26	LPAR3 (ENSBBBG00000024176) #27	SSX2IP (ENSBBBG00000008990) #28	CTBS (ENSBBBG00000024262) #29	SPATA1 (ENSBBBG00000024290) #30	ENSBBBG00000024302 #31	RPF1 (ENSBBBG00000008889) #32	DNASE2B (ENSBBBG00000006341) #33	ENSBBBG00000006366 #34	SAMD13 (ENSBBBG00000024450)	ENSBBBG00000024455	PRKACB (ENSBBBG00000024703) #36
Bos	ANCESTRAL SPECIES		ENSGT00530000063408.B	ENSGT00940000154284.a	ENSGT00940000155667	ENSGT00940000157555.a #9	ENSGT00940000157555.b #8	ENSGT00940000160416 #10	ENSGT00940000154682.C #12	ENSGT00940000161548 #13	ENSGT00530000063497.b #14	ENSGT00940000162448 #15	ENSGT00390000017201 #16	ENSGT00940000155151.b #17	ENSGT01000000215412 #18	ENSGT00940000157892 #20	ENSGT00490000043442 #21	ENSGT00390000017398 #22	ENSGT01030000234635.a.a.a.a #23	ENSGT00940000156924 #24	ENSGT00950000183036.a.a #25	ENSGT00950000183036.a.b #26	ENSGT01050000244941.B.d #27	ENSGT00390000007688 #28	ENSGT00390000012891 #29	ENSGT00390000003298 #30	ENSGT01100000263525.a.b.b.c.b #31	ENSGT00940000153231.B #32	ENSGT00390000002634.b #33	ENSGT00940000153229.B #34	ENSGT00910000147804	ENSGT00530000063936.b	ENSGT00940000163788 #35
Bos_b	ANCESTRAL SPECIES	1	ENSGT00940000154284.a	ENSGT00940000155667	ENSGT01100000263480.a.a.b.a.a.a.b.a.a.a.b.b.b.b.a.b.a.b.a.a ##19	ENSGT00940000157555.a #9	ENSGT00940000157555.b #8	ENSGT00940000160416 #10	ENSGT00940000154682.C #12	ENSGT00940000161548 #13	ENSGT00530000063497.b #14	ENSGT00940000162448 #15	ENSGT00390000017201 #16	ENSGT00940000155151.b #17	ENSGT01000000215412 #18	ENSGT00940000157892 #20	ENSGT00490000043442 #21	ENSGT00390000017398 #22	ENSGT01030000234635.a.a.a.a #23	ENSGT00940000156924 #24	ENSGT00950000183036.a.a #25	ENSGT00950000183036.a.b #26	ENSGT01050000244941.B.d #27	ENSGT00390000007688 #28	ENSGT00390000012891 #29	ENSGT00390000003298 #30	ENSGT01100000263525.a.b.b.c.b #31	ENSGT00940000153231.B #32	ENSGT00390000002634.b #33	ENSGT00940000153229.B #34	ENSGT00910000147804	ENSGT00530000063936.b	ENSGT00940000163788 #35
Hybrid Bos Indicus	MODERN SPECIES	22	SH3GLB1 (ENSBIXG00005029220)	ENSBIXG00005001721 ##19	ENSBIXG00005001767 #8	ENSBIXG00005029153 #9	CLCA4 (ENSBIXG00005029144) #10	CLCA1 (ENSBIXG00005005168) #12	CLCA2 (ENSBIXG00005029083) #13	ENSBIXG00005001995 ##19	ODF2L (ENSBIXG00005005132) #14	COL24A1 (ENSBIXG00005028988) #15	ZNHIT6 (ENSBIXG00005002133) #16	CCN1 (ENSBIXG00005028896) #17	ENSBIXG00005002260 #18	DDAH1 (ENSBIXG00005002285) #20	BCL10 (ENSBIXG00005028824) #21	C1orf52 (ENSBIXG00005006646) #22	SYDE2 (ENSBIXG00005028777) #23	DNAI3 (ENSBIXG00005028759) #24	ENSBIXG00005028687	MCOLN3 (ENSBIXG00005028662) #25	MCOLN2 (ENSBIXG00005028583) #26	LPAR3 (ENSBIXG00005028548) #27	SSX2IP (ENSBIXG00005028521) #28	CTBS (ENSBIXG00005028483) #29	SPATA1 (ENSBIXG00005028480) #30	ENSBIXG00005028437 ##19	ENSBIXG00005004893 #31	RPF1 (ENSBIXG00005028403) #32	ENSBIXG00005028353 #34	DNASE2B (ENSBIXG00005004867) #33	ENSBIXG00005028288
Cow	MODERN SPECIES	22	HS2ST1 (ENSBTAG00000017595)	SELENOF (ENSBTAG00000052268)	SH3GLB1 (ENSBTAG00000031171)	ENSBTAG00000051311 ##19	ENSBTAG00000021501 #9	CLCA3 (ENSBTAG00000016712) #8	CLCA4 (ENSBTAG00000017357) #10	CLCA1 (ENSBTAG00000008161) #12	CLCA2 (ENSBTAG00000038215) #13	ODF2L (ENSBTAG00000012907) #14	ENSBTAG00000048312 #15	ZNHIT6 (ENSBTAG00000021051) #16	CCN1 (ENSBTAG00000009844) #17	DDAH1 (ENSBTAG00000034776) #20	BCL10 (ENSBTAG00000013851) #21	C3H1orf52 (ENSBTAG00000016326) #22	SYDE2 (ENSBTAG00000003444) #23	DNAI3 (ENSBTAG00000013778) #24	MCOLN3 (ENSBTAG00000016982) #25	MCOLN2 (ENSBTAG00000046773) #26	LPAR3 (ENSBTAG00000003791) #27	SSX2IP (ENSBTAG00000018942) #28	CTBS (ENSBTAG00000005782) #29	SPATA1 (ENSBTAG00000020010) #30	GNG5 (ENSBTAG00000008122) #31	RPF1 (ENSBTAG00000008118) #32	UOX (ENSBTAG00000024255) #34	DNASE2B (ENSBTAG00000010445) #33	ENSBTAG00000053100	SAMD13 (ENSBTAG00000053482)	SAMD13 (ENSBTAG00000007724) #35
Bos_a	ANCESTRAL SPECIES	1	ENSGT00530000063408.B	ENSGT00940000154284.a	ENSGT00940000155667	ENSGT00940000157555.a #9	ENSGT00940000157555.b #8	ENSGT00940000160416 #10	ENSGT00940000154682.C #12	ENSGT00940000161548 #13	ENSGT00530000063497.b #14	ENSGT00940000162448 #15	ENSGT00390000017201 #16	ENSGT00940000155151.b #17	ENSGT01000000215412 #18	ENSGT00940000157892 #20	ENSGT00490000043442 #21	ENSGT00390000017398 #22	ENSGT01030000234635.a.a.a.a #23	ENSGT00940000156924 #24	ENSGT00950000183036.a.a #25	ENSGT00950000183036.a.b #26	ENSGT01050000244941.B.d #27	ENSGT00390000007688 #28	ENSGT00390000012891 #29	ENSGT00390000003298 #30	ENSGT01100000263525.a.b.b.c.b #31	ENSGT00940000153231.B #32	ENSGT00390000002634.b #33	ENSGT00940000153229.B #34	ENSGT00530000063936.b	ENSGT00940000161169 #36	ENSGT00940000159078
Domestic yak	MODERN SPECIES	22	SELENOF (ENSBGRG00000004000)	SH3GLB1 (ENSBGRG00000004071)	ENSBGRG00000004351 #8	CLCA4 (ENSBGRG00000004774) #10	CLCA1 (ENSBGRG00000006534) #12	CLCA2 (ENSBGRG00000006661) #13	ENSBGRG00000006706 ##19	ODF2L (ENSBGRG00000006729) #14	COL24A1 (ENSBGRG00000006871) #15	ENSBGRG00000000235	ZNHIT6 (ENSBGRG00000000263) #16	CCN1 (ENSBGRG00000000313) #17	ENSBGRG00000000337 #18	DDAH1 (ENSBGRG00000000347) #20	BCL10 (ENSBGRG00000000384) #21	C1orf52 (ENSBGRG00000000411) #22	SYDE2 (ENSBGRG00000000456) #23	DNAI3 (ENSBGRG00000000494) #24	MCOLN3 (ENSBGRG00000000709) #25	MCOLN2 (ENSBGRG00000000755) #26	ENSBGRG00000000797	LPAR3 (ENSBGRG00000000803) #27	SSX2IP (ENSBGRG00000000833) #28	CTBS (ENSBGRG00000000887) #29	SPATA1 (ENSBGRG00000000917) #30	ENSBGRG00000000963 #31	RPF1 (ENSBGRG00000000983) #32	ENSBGRG00000001021 #34	DNASE2B (ENSBGRG00000001063) #33	ENSBGRG00000001096	PRKACB (ENSBGRG00000001167) #36
Wild yak	MODERN SPECIES	151	HS2ST1 (ENSBMUG00000017400)	SELENOF (ENSBMUG00000017480)	SH3GLB1 (ENSBMUG00000017608)	ENSBMUG00000017730 #9	ENSBMUG00000017762 #8	CLCA4 (ENSBMUG00000017782) #10	CLCA1 (ENSBMUG00000017812) #12	CLCA2 (ENSBMUG00000017843) #13	ODF2L (ENSBMUG00000017919) #14	COL24A1 (ENSBMUG00000017985) #15	ENSBMUG00000018023	ZNHIT6 (ENSBMUG00000018058) #16	CCN1 (ENSBMUG00000018082) #17	DDAH1 (ENSBMUG00000018146) #20	BCL10 (ENSBMUG00000018176) #21	C1orf52 (ENSBMUG00000018196) #22	SYDE2 (ENSBMUG00000018219) #23	DNAI3 (ENSBMUG00000018237) #24	MCOLN3 (ENSBMUG00000018289) #25
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	339	HS2ST1 (ENSMMSG00000004654)	SELENOF (ENSMMSG00000004702)	SH3GLB1 (ENSMMSG00000004787)	ENSMMSG00000005173 #9	ENSMMSG00000005817 #8	CLCA4 (ENSMMSG00000006195) #10	CLCA1 (ENSMMSG00000006239) #12	CLCA2 (ENSMMSG00000006290) #13	ODF2L (ENSMMSG00000006331) #14	COL24A1 (ENSMMSG00000006437) #15	ZNHIT6 (ENSMMSG00000006731) #16	CCN1 (ENSMMSG00000006870) #17	ENSMMSG00000006904 #18	DDAH1 (ENSMMSG00000006918) #20	BCL10 (ENSMMSG00000006944) #21	C1orf52 (ENSMMSG00000006971) #22	SYDE2 (ENSMMSG00000006993) #23	DNAI3 (ENSMMSG00000007042) #24	MCOLN3 (ENSMMSG00000007252) #25	MCOLN2 (ENSMMSG00000007452) #26	LPAR3 (ENSMMSG00000007558) #27	SSX2IP (ENSMMSG00000007576) #28	CTBS (ENSMMSG00000007643) #29	ENSMMSG00000007667 #30	ENSMMSG00000007684 #31	ENSMMSG00000007703 #32	DNASE2B (ENSMMSG00000007733) #33	ENSMMSG00000007774 #34	ENSMMSG00000007862	SAMD13 (ENSMMSG00000007874)	PRKACB (ENSMMSG00000007994) #36
Siberian musk deer	MODERN SPECIES	243														ENSMMSG00000010912	ENSMMSG00000010903	ENSMMSG00000010889 #22	SRBD1 (ENSMMSG00000010782)	PRKCE (ENSMMSG00000010644)	ENSMMSG00000010613	EPAS1 (ENSMMSG00000010543)	TMEM247 (ENSMMSG00000010509)	ATP6V1E2 (ENSMMSG00000010493)	RHOQ (ENSMMSG00000010463)	PIGF (ENSMMSG00000010411)	CRIPT (ENSMMSG00000010380)	SOCS5 (ENSMMSG00000010366)	ENSMMSG00000010348	MCFD2 (ENSMMSG00000010275)	TTC7A (ENSMMSG00000010218)	STPG4 (ENSMMSG00000010164)	CALM2 (ENSMMSG00000010115)