Rodentia_A	ANCESTRAL SPECIES	7	ENSGT00940000157281 #9	ENSGT00390000010107 #10	ENSGT00390000012630.A #11	ENSGT00940000156944 #12	ENSGT00940000157213 #13	ENSGT00940000157692	ENSGT00940000157139 #14	ENSGT00940000159349 #15	ENSGT00940000159591 #16	ENSGT00940000163112	ENSGT00390000002292.b #17	ENSGT00390000009693 #18	ENSGT00940000159531 #19	ENSGT00940000154245.A #20	ENSGT00940000156722 #21	ENSGT00940000159136 #22	ENSGT00940000156685 #23	ENSGT00940000154726 #24	ENSGT00390000001644 #25	ENSGT00390000007135 #26	ENSGT00390000006721 #27	ENSGT01030000234566.e.b.a.b	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00550000074792.a.b	ENSGT00940000156396	ENSGT00940000159322	ENSGT00510000047951	ENSGT00940000154903	ENSGT00530000063787.A	ENSGT00940000161316
Sciuridae	ANCESTRAL SPECIES	33	ENSGT00940000157281 #9	ENSGT00390000010107 #10	ENSGT00390000012630.A #11	ENSGT00940000156944 #12	ENSGT00940000157213 #13	ENSGT00940000157692	ENSGT00940000157139 #14	ENSGT00940000159349 #15	ENSGT00940000159591 #16	ENSGT00940000163112	ENSGT00390000002292.b #17	ENSGT00390000009693.x #18	ENSGT00940000159531 #19	ENSGT00940000154245.A #20	ENSGT00940000156722 #21	ENSGT00940000159136 #22	ENSGT00940000156685 #23	ENSGT00940000154726 #24	ENSGT00390000001644 #25	ENSGT00390000007135 #26	ENSGT00390000006721 #27	ENSGT01030000234566.e.b.a.b	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00550000074792.a.b	ENSGT00940000156396	ENSGT00940000159322	ENSGT00510000047951	ENSGT00940000154903	ENSGT00530000063787.A	ENSGT00940000161316
Marmotini	ANCESTRAL SPECIES	38	ENSGT00940000157281 #9	ENSGT00390000010107 #10	ENSGT00390000012630.A #11	ENSGT00940000156944 #12	ENSGT00940000157213 #13	ENSGT00940000157692	ENSGT00940000157139 #14	ENSGT00940000159349 #15	ENSGT00940000159591 #16	ENSGT00940000163112	ENSGT00390000002292.b #17	ENSGT00390000009693.x.a #18	ENSGT00940000159531 #19	ENSGT00940000154245.A #20	ENSGT00940000156722 #21	ENSGT00940000159136 #22	ENSGT00940000156685 #23	ENSGT00940000154726 #24	ENSGT00390000001644 #25	ENSGT00390000007135 #26	ENSGT00390000006721.m #27	ENSGT01030000234566.e.b.a.b	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00550000074792.a.b	ENSGT00940000156396	ENSGT00940000159322	ENSGT00510000047951	ENSGT00940000154903	ENSGT00530000063787.A	ENSGT00940000161316
Marmotini_b	ANCESTRAL SPECIES	96	ENSGT00940000157281 #9	ENSGT00390000010107 #10	ENSGT00390000012630.A #11	ENSGT00940000156944 #12	ENSGT00940000157213 #13	ENSGT00940000157692	ENSGT00940000157139 #14	ENSGT00940000159349 #15	ENSGT00940000159591 #16	ENSGT00940000163112	ENSGT00390000002292.b #17	ENSGT00390000009693.x.a #18	ENSGT00940000159531 #19	ENSGT00940000154245.A #20	ENSGT00940000156722 #21	ENSGT00940000159136 #22	ENSGT00940000156685 #23	ENSGT00940000154726 #24	ENSGT00390000001644 #25	ENSGT00390000007135 #26	ENSGT00390000006721.m #27
Arctic ground squirrel	MODERN SPECIES	155			RNF145 (ENSUPAG00010005770) #9	UBLCP1 (ENSUPAG00010005779) #10	IL12B (ENSUPAG00010005785) #11	ADRA1B (ENSUPAG00010005801) #12	TTC1 (ENSUPAG00010005805) #13	FABP6 (ENSUPAG00010005815) #14	CCNJL (ENSUPAG00010005817) #15	C1QTNF2 (ENSUPAG00010005819) #16	SLU7 (ENSUPAG00010005823) #17	ENSUPAG00010005834 #18	ATP10B (ENSUPAG00010005847) #19	GABRB2 (ENSUPAG00010005867) #20	GABRA6 (ENSUPAG00010005889) #21	GABRA1 (ENSUPAG00010005907) #22	GABRG2 (ENSUPAG00010005919) #23	ENSUPAG00010005943 #24	NUDCD2 (ENSUPAG00010005948) #25	HMMR (ENSUPAG00010005958) #26	MAT2B (ENSUPAG00010005974) #27
Squirrel	MODERN SPECIES	115	ENSSTOG00000034104	RNF145 (ENSSTOG00000009671) #9	UBLCP1 (ENSSTOG00000000854) #10	IL12B (ENSSTOG00000005006) #11	ADRA1B (ENSSTOG00000026778) #12	TTC1 (ENSSTOG00000024913) #13	ENSSTOG00000021953	FABP6 (ENSSTOG00000002847) #14	CCNJL (ENSSTOG00000020277) #15	C1QTNF2 (ENSSTOG00000005319) #16	FAM200C (ENSSTOG00000015054)	SLU7 (ENSSTOG00000015057) #17	ATP10B (ENSSTOG00000015071) #19	GABRB2 (ENSSTOG00000003453) #20	GABRA6 (ENSSTOG00000024430) #21	GABRA1 (ENSSTOG00000023032) #22	GABRG2 (ENSSTOG00000011340) #23	CCNG1 (ENSSTOG00000000007) #24	NUDCD2 (ENSSTOG00000028665) #25	HMMR (ENSSTOG00000009441) #26	ENSSTOG00000009459 #27
Alpin marmot	MODERN SPECIES	31	EBF1 (ENSMMMG00000013034)	RNF145 (ENSMMMG00000012987) #9	ENSMMMG00000012967 #10	IL12B (ENSMMMG00000012950) #11	ADRA1B (ENSMMMG00000012931) #12	TTC1 (ENSMMMG00000012911) #13	PWWP2A (ENSMMMG00000012906)	FABP6 (ENSMMMG00000012902) #14	CCNJL (ENSMMMG00000012864) #15	C1QTNF2 (ENSMMMG00000012860) #16	ENSMMMG00000012841 #17	ENSMMMG00000012834 #18	ATP10B (ENSMMMG00000012800) #19	GABRB2 (ENSMMMG00000012737) #20	GABRA6 (ENSMMMG00000012710) #21	GABRA1 (ENSMMMG00000012690) #22	GABRG2 (ENSMMMG00000012646) #23	CCNG1 (ENSMMMG00000012636) #24	NUDCD2 (ENSMMMG00000012628) #25	ENSMMMG00000012622	HMMR (ENSMMMG00000012544) #26	MAT2B (ENSMMMG00000012522) #27	ENSMMMG00000012514	TENM2 (ENSMMMG00000012441)	WWC1 (ENSMMMG00000011450)	RARS1 (ENSMMMG00000010943)	ENSMMMG00000010921	SLIT3 (ENSMMMG00000010861)	SPDL1 (ENSMMMG00000010830)	INSYN2B (ENSMMMG00000010818)	DOCK2 (ENSMMMG00000010732)
Eurasian red squirrel	MODERN SPECIES	15	RNF145 (ENSSVLG00005021231) #9	UBLCP1 (ENSSVLG00005021106) #10	IL12B (ENSSVLG00005021038) #11	ADRA1B (ENSSVLG00005021005) #12	TTC1 (ENSSVLG00005020964) #13	PWWP2A (ENSSVLG00005020908)	FABP6 (ENSSVLG00005020859) #14	CCNJL (ENSSVLG00005020821) #15	C1QTNF2 (ENSSVLG00005020795) #16	FAM200C (ENSSVLG00005020786)	SLU7 (ENSSVLG00005020756) #17	ENSSVLG00005020660 #18	ATP10B (ENSSVLG00005020304) #19	GABRB2 (ENSSVLG00005019857) #20	GABRA6 (ENSSVLG00005019650) #21	GABRA1 (ENSSVLG00005019500) #22	GABRG2 (ENSSVLG00005019116) #23	ENSSVLG00005018994	CCNG1 (ENSSVLG00005018875) #24	NUDCD2 (ENSSVLG00005018809) #25	HMMR (ENSSVLG00005018590) #26	MAT2B (ENSSVLG00005018457) #27	ENSSVLG00005018376	TENM2 (ENSSVLG00005017474)	WWC1 (ENSSVLG00005017323)	RARS1 (ENSSVLG00005017270)	FBLL1 (ENSSVLG00005017249)	ENSSVLG00005017131	SLIT3 (ENSSVLG00005017034)	SPDL1 (ENSSVLG00005016956)	INSYN2B (ENSSVLG00005016909)
Hystricomorpha	ANCESTRAL SPECIES	30	ENSGT00940000157281 #9	ENSGT00390000010107 #10	ENSGT00390000012630.A #11	ENSGT00940000156944 #12	ENSGT00940000157213 #13	ENSGT00940000157692	ENSGT00940000157139 #14	ENSGT00940000159349 #15	ENSGT00940000159591 #16	ENSGT00940000163112	ENSGT00390000002292.b #17	ENSGT00390000009693 #18	ENSGT00940000159531 #19	ENSGT00940000154245.A #20	ENSGT00940000156722 #21	ENSGT00940000159136 #22	ENSGT00940000156685 #23	ENSGT00940000154726.v #24	ENSGT00940000154726.u.a #24	ENSGT00390000001644 #25	ENSGT00390000007135 #26	ENSGT00390000006721.o.b #27	ENSGT01030000234566.e.b.a.b	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00550000074792.a.b	ENSGT00940000156396	ENSGT00940000159322	ENSGT00510000047951	ENSGT00940000154903	ENSGT00530000063787.A
Hystricomorpha_a	ANCESTRAL SPECIES	28	ENSGT00940000157281 #9	ENSGT00390000010107 #10	ENSGT00390000012630.A #11	ENSGT00940000156944 #12	ENSGT00940000157213 #13	ENSGT00940000157692	ENSGT00940000157139 #14	ENSGT00940000159349 #15	ENSGT00940000159591 #16	ENSGT00940000163112	ENSGT00390000002292.b #17	ENSGT00390000009693 #18	ENSGT00940000159531 #19	ENSGT00940000154245.A #20	ENSGT00940000156722 #21	ENSGT00940000159136 #22	ENSGT00940000156685 #23	ENSGT00940000154726.v #24	ENSGT00390000001644 #25	ENSGT00390000007135 #26	ENSGT00390000006721.o.b #27	ENSGT01030000234566.e.b.a.b	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00550000074792.a.b	ENSGT00940000156396	ENSGT00940000159322	ENSGT00510000047951	ENSGT00940000154903	ENSGT00530000063787.A	ENSGT00940000161316
Guinea pig	MODERN SPECIES	17	RNF145 (ENSCPOG00000008166) #9	UBLCP1 (ENSCPOG00000001621) #10	IL12B (ENSCPOG00000001622) #11	ADRA1B (ENSCPOG00000019316) #12	TTC1 (ENSCPOG00000004128) #13	PWWP2A (ENSCPOG00000004130)	FABP6 (ENSCPOG00000025902) #14	CCNJL (ENSCPOG00000034225) #15	C1QTNF2 (ENSCPOG00000002753) #16	FAM200C (ENSCPOG00000040506)	SLU7 (ENSCPOG00000004484) #17	ENSCPOG00000011971 #18	ATP10B (ENSCPOG00000015077) #19	GABRB2 (ENSCPOG00000015215) #20	GABRA6 (ENSCPOG00000009693) #21	GABRA1 (ENSCPOG00000006871) #22	GABRG2 (ENSCPOG00000002188) #23	CCNG1 (ENSCPOG00000040311) #24	NUDCD2 (ENSCPOG00000040077) #25	HMMR (ENSCPOG00000000878) #26	MAT2B (ENSCPOG00000002033) #27	ENSCPOG00000035724	TENM2 (ENSCPOG00000000985)	WWC1 (ENSCPOG00000011701)	RARS1 (ENSCPOG00000007379)	FBLL1 (ENSCPOG00000025737)	PANK3 (ENSCPOG00000003340)	SLIT3 (ENSCPOG00000011591)	SPDL1 (ENSCPOG00000010816)	DOCK2 (ENSCPOG00000010822)	INSYN2B (ENSCPOG00000010850)
Hystricomorpha_b	ANCESTRAL SPECIES	19	ENSGT00940000157281 #9	ENSGT00390000010107 #10	ENSGT00390000012630.A #11	ENSGT00940000156944 #12	ENSGT00940000157213 #13	ENSGT00940000157692	ENSGT00940000157139 #14	ENSGT00940000159349 #15	ENSGT00940000159591 #16	ENSGT00940000163112	ENSGT00390000002292.b #17	ENSGT00390000009693 #18	ENSGT00940000159531 #19	ENSGT00940000154245.A #20	ENSGT00940000156722 #21	ENSGT00940000159136 #22	ENSGT00940000156685 #23	ENSGT00940000154726.v #24	ENSGT00390000001644 #25	ENSGT00390000007135 #26	ENSGT00390000006721.o.a #27	ENSGT01030000234566.e.b.a.b	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00550000074792.a.b	ENSGT00940000156396	ENSGT00940000159322	ENSGT00510000047951	ENSGT00940000154903	ENSGT00530000063787.A	ENSGT00940000161316
Degu	MODERN SPECIES	70	ENSODEG00000011564 #10	IL12B (ENSODEG00000011137) #11	ADRA1B (ENSODEG00000010364) #12	TTC1 (ENSODEG00000010814) #13	ENSODEG00000012262 #14	CCNJL (ENSODEG00000011156) #15	C1QTNF2 (ENSODEG00000010469) #16	FAM200C (ENSODEG00000019938)	ENSODEG00000010998 #17	ENSODEG00000010237 #18	ATP10B (ENSODEG00000010055) #19	ENSODEG00000010548	ENSODEG00000020236	GABRB2 (ENSODEG00000011900) #20	GABRA6 (ENSODEG00000010276) #21	GABRA1 (ENSODEG00000010464) #22	GABRG2 (ENSODEG00000010117) #23
Long-tailed chinchilla	MODERN SPECIES	115	RNF145 (ENSCLAG00000014266) #9	UBLCP1 (ENSCLAG00000015579) #10	IL12B (ENSCLAG00000012311) #11	ADRA1B (ENSCLAG00000013326) #12	TTC1 (ENSCLAG00000011604) #13	PWWP2A (ENSCLAG00000012281)	FABP6 (ENSCLAG00000012776) #14	CCNJL (ENSCLAG00000013768) #15	C1QTNF2 (ENSCLAG00000015504) #16	FAM200C (ENSCLAG00000017741)	SLU7 (ENSCLAG00000011915) #17	ENSCLAG00000014055 #18	ATP10B (ENSCLAG00000014630) #19	GABRB2 (ENSCLAG00000012890) #20	GABRA6 (ENSCLAG00000012472) #21	GABRA1 (ENSCLAG00000013100) #22	GABRG2 (ENSCLAG00000015535) #23	ENSCLAG00000013234	ENSCLAG00000015331 #24	ENSCLAG00000016567 #25	HMMR (ENSCLAG00000011552) #26	ENSCLAG00000012720 #27	ENSCLAG00000015750	TENM2 (ENSCLAG00000013317)	ENSCLAG00000016881	WWC1 (ENSCLAG00000013004)	ENSCLAG00000013061	FBLL1 (ENSCLAG00000018056)	PANK3 (ENSCLAG00000014838)	SLIT3 (ENSCLAG00000015496)	SPDL1 (ENSCLAG00000014912)
Naked mole-rat female	MODERN SPECIES	23	PWWP2A (ENSHGLG00000010411)	ENSHGLG00000009227 #14	CCNJL (ENSHGLG00000041358) #15	C1QTNF2 (ENSHGLG00000046801) #16	FAM200C (ENSHGLG00000036354)	SLU7 (ENSHGLG00000009442) #17	ENSHGLG00000008073 #18	ENSHGLG00000038625	ENSHGLG00000005435 #19	ENSHGLG00000034285	ENSHGLG00000020663	ENSHGLG00000039327	ENSHGLG00000034193	ENSHGLG00000007765 #20	ENSHGLG00000006271 #21	GABRA1 (ENSHGLG00000034287) #22	GABRG2 (ENSHGLG00000043732) #23	ENSHGLG00000007398	ENSHGLG00000020342	CCNG1 (ENSHGLG00000037731) #24	ENSHGLG00000005569 #25	HMMR (ENSHGLG00000005524) #26	MAT2B (ENSHGLG00000012512) #27	ENSHGLG00000012298	ENSHGLG00000049155	ENSHGLG00000043966	TENM2 (ENSHGLG00000007420)	WWC1 (ENSHGLG00000017261)	RARS1 (ENSHGLG00000013073)	ENSHGLG00000021018	FBLL1 (ENSHGLG00000015259)