Pecora	ANCESTRAL SPECIES	23	ENSGT00940000154361.A #8	ENSGT00940000162542 #9	ENSGT00940000161261 #10	ENSGT00390000002395 #11	ENSGT00940000160575 #12	ENSGT00390000001504 #13	ENSGT00940000164144	ENSGT00940000158713 #14	ENSGT00390000010734.j.b #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00950000183026.B #17	ENSGT00940000155349 #18	ENSGT00390000004952.b #19	ENSGT00940000156630 #20	ENSGT00950000183120.e.b.a.a.a #21	ENSGT00390000002316 #22	ENSGT00940000158706 #23	ENSGT00390000018451 #24	ENSGT00390000009484 #25	ENSGT00940000162967	ENSGT00940000159635 #26	ENSGT00940000155499 #27	ENSGT00940000158948.b #28	ENSGT00610000086058.b #30	ENSGT00390000012305.b #31	ENSGT00390000003602 #32	ENSGT00940000161564 #33	ENSGT00940000165080 #35	ENSGT00940000161440 #36	ENSGT00940000157257 #37	ENSGT00940000157614
Percora_a	ANCESTRAL SPECIES	25	ENSGT00940000154361.A #8	ENSGT00940000162542 #9	ENSGT00940000161261 #10	ENSGT00390000002395 #11	ENSGT00940000160575 #12	ENSGT00390000001504 #13	ENSGT00940000164144	ENSGT00940000158713 #14	ENSGT00390000010734.j.b #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00950000183026.B #17	ENSGT00940000155349 #18	ENSGT00390000004952.b #19	ENSGT00940000156630 #20	ENSGT00950000183120.e.b.a.a.a #21	ENSGT00390000002316 #22	ENSGT00940000158706 #23	ENSGT00390000018451 #24	ENSGT00390000009484 #25	ENSGT00940000162967	ENSGT00940000159635 #26	ENSGT00940000155499 #27	ENSGT00940000158948.b #28	ENSGT00610000086058.b #30	ENSGT00390000012305.b #31	ENSGT00390000003602 #32	ENSGT00940000161564 #33	ENSGT00940000165080 #35	ENSGT00940000161440 #36	ENSGT00940000157257 #37	ENSGT00940000157614
Bovidae	ANCESTRAL SPECIES	25	ENSGT00940000154361.A #8	ENSGT00940000162542 #9	ENSGT00940000161261 #10	ENSGT00390000002395 #11	ENSGT00940000160575 #12	ENSGT00390000001504 #13	ENSGT00940000164144	ENSGT00940000158713 #14	ENSGT00390000010734.j.b #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00950000183026.B #17	ENSGT00940000155349 #18	ENSGT00390000004952.b #19	ENSGT00940000156630 #20	ENSGT00950000183120.e.b.a.a.a #21	ENSGT00390000002316 #22	ENSGT00940000158706 #23	ENSGT00390000018451 #24	ENSGT00390000009484 #25	ENSGT00940000162967	ENSGT00940000159635 #26	ENSGT00940000155499 #27	ENSGT00940000158948.b #28	ENSGT00610000086058.b #30	ENSGT00390000012305.b #31	ENSGT00390000003602 #32	ENSGT00940000161564 #33	ENSGT00940000165080 #35	ENSGT00940000161440 #36	ENSGT00940000157257 #37	ENSGT00940000157614
Caprinae	ANCESTRAL SPECIES	28	ENSGT00390000003643.k #7	ENSGT00940000154361.A #8	ENSGT00940000162542 #9	ENSGT00940000161261 #10	ENSGT00390000002395 #11	ENSGT00940000160575 #12	ENSGT00390000001504 #13	ENSGT00940000158713 #14	ENSGT00390000010734.j.b #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00950000183026.B #17	ENSGT00940000155349 #18	ENSGT00390000004952.b #19	ENSGT00940000156630 #20	ENSGT00950000183120.e.b.a.a.a #21	ENSGT00390000002316 #22	ENSGT00940000158706 #23	ENSGT00390000018451 #24	ENSGT00390000009484 #25	ENSGT00940000162967	ENSGT00940000159635 #26	ENSGT00940000155499 #27	ENSGT00940000158948.b #28	ENSGT00610000086058.b #30	ENSGT00390000012305.b #31	ENSGT00390000003602 #32	ENSGT00940000161564 #33	ENSGT00390000017100 #34	ENSGT00940000165080 #35	ENSGT00940000161440 #36	ENSGT00940000157257 #37
Goat	MODERN SPECIES	3	ENSCHIG00000014902 #7	GSX1 (ENSCHIG00000026107) #8	PDX1 (ENSCHIG00000016212) #9	CDX2 (ENSCHIG00000024755) #10	ENSCHIG00000015696 #11	FLT3 (ENSCHIG00000006089) #12	PAN3 (ENSCHIG00000010876) #13	FLT1 (ENSCHIG00000019587) #14	ENSCHIG00000007021 #15	SLC46A3 (ENSCHIG00000006252) #16	MTUS2 (ENSCHIG00000014951) #17	SLC7A1 (ENSCHIG00000017131) #18	UBL3 (ENSCHIG00000005881) #19	KATNAL1 (ENSCHIG00000011417) #20	HMGB1 (ENSCHIG00000018473) #21	USPL1 (ENSCHIG00000025535) #22	ALOX5AP (ENSCHIG00000020532) #23	MEDAG (ENSCHIG00000019733) #24	TEX26 (ENSCHIG00000013376) #25	HSPH1 (ENSCHIG00000003518) #26	B3GLCT (ENSCHIG00000016248) #27	RXFP2 (ENSCHIG00000007689) #28	ENSCHIG00000014918 #29	FRY (ENSCHIG00000018326) #30	ZAR1L (ENSCHIG00000012458) #31	BRCA2 (ENSCHIG00000021344) #32	N4BP2L1 (ENSCHIG00000006314) #33	ENSCHIG00000015346 #34	ENSCHIG00000017364 #35	N4BP2L2 (ENSCHIG00000019989) #36	PDS5B (ENSCHIG00000006844) #37
Bovinae	ANCESTRAL SPECIES	29	ENSGT00940000154361.A #8	ENSGT00940000162542 #9	ENSGT00940000161261 #10	ENSGT00390000002395 #11	ENSGT00940000160575 #12	ENSGT00390000001504 #13	ENSGT00940000164144	ENSGT00940000158713 #14	ENSGT00390000010734.j.b #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00950000183026.B #17	ENSGT00940000155349 #18	ENSGT00390000004952.b #19	ENSGT00940000156630 #20	ENSGT00950000183120.e.b.a.a.a #21	ENSGT00390000002316 #22	ENSGT00940000158706 #23	ENSGT00390000018451 #24	ENSGT00390000009484 #25	ENSGT00940000162967	ENSGT00940000159635 #26	ENSGT00940000155499 #27	ENSGT00940000158948.b #28	ENSGT00610000086058.b #30	ENSGT00390000012305.b #31	ENSGT00390000003602 #32	ENSGT00940000161564 #33	ENSGT00940000165080 #35	ENSGT00900000143638	ENSGT00940000161440 #36	ENSGT00940000157257 #37
Bos	ANCESTRAL SPECIES	28	ENSGT00940000154361.A #8	ENSGT00940000162542 #9	ENSGT00940000161261 #10	ENSGT00390000002395 #11	ENSGT00940000160575 #12	ENSGT00390000001504 #13	ENSGT00940000164144	ENSGT00940000158713 #14	ENSGT00390000010734.j.b #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00950000183026.B #17	ENSGT00940000155349 #18	ENSGT00390000004952.b #19	ENSGT00940000156630 #20	ENSGT00950000183120.e.b.a.a.a #21	ENSGT00390000002316 #22	ENSGT00940000158706 #23	ENSGT00390000018451 #24	ENSGT00390000009484 #25	ENSGT00940000162967	ENSGT00940000159635 #26	ENSGT00940000155499 #27	ENSGT00940000158948.b #28	ENSGT00610000086058.b #30	ENSGT00390000012305.b #31	ENSGT00390000003602 #32	ENSGT00940000161564 #33	ENSGT00940000165080 #35	ENSGT00900000143638	ENSGT00940000161440 #36	ENSGT00940000157257 #37
Bos_b	ANCESTRAL SPECIES	33	ENSGT00940000154361.A #8	ENSGT00940000162542 #9	ENSGT00940000161261 #10	ENSGT00390000002395 #11	ENSGT00940000160575 #12	ENSGT00390000001504 #13	ENSGT00940000158713 #14	ENSGT00390000010734.j.b #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00950000183026.B #17	ENSGT00940000155349 #18	ENSGT00390000004952.b #19	ENSGT01100000263481.n.a.b.b.a.b.b.a.a.b.a.b	ENSGT00940000156630 #20	ENSGT00950000183120.e.b.a.a.a #21	ENSGT00390000002316 #22	ENSGT00940000158706 #23	ENSGT00390000018451 #24	ENSGT00390000009484 #25	ENSGT00940000162967	ENSGT00940000159635 #26	ENSGT00940000155499 #27	ENSGT00940000158948.b #28	ENSGT00610000086058.b #30	ENSGT00390000012305.b #31	ENSGT00390000003602 #32	ENSGT00940000161564 #33	ENSGT00940000161440 #36	ENSGT00940000157257 #37	ENSGT00940000157614	ENSGT00950000183061.a.a.b
Cow	MODERN SPECIES	3	ENSBTAG00000048386 #7	GSX1 (ENSBTAG00000009166) #8	PDX1 (ENSBTAG00000010690) #9	CDX2 (ENSBTAG00000001819) #10	URAD (ENSBTAG00000013819) #11	FLT3 (ENSBTAG00000018572) #12	PAN3 (ENSBTAG00000009912) #13	FLT1 (ENSBTAG00000016915) #14	POMP (ENSBTAG00000014024) #15	MTUS2 (ENSBTAG00000001094) #17	SLC7A1 (ENSBTAG00000018577) #18	UBL3 (ENSBTAG00000012170) #19	ENSBTAG00000052411	KATNAL1 (ENSBTAG00000009340) #20	HMGB1 (ENSBTAG00000018103) #21	USPL1 (ENSBTAG00000001178) #22	ALOX5AP (ENSBTAG00000013201) #23	MEDAG (ENSBTAG00000008271) #24	TEX26 (ENSBTAG00000033386) #25	ENSBTAG00000016052	HSPH1 (ENSBTAG00000005012) #26	B3GLCT (ENSBTAG00000033412) #27	ENSBTAG00000053332	RXFP2 (ENSBTAG00000015132) #28	FRY (ENSBTAG00000006771) #30	ZAR1L (ENSBTAG00000026384) #31	BRCA2 (ENSBTAG00000000988) #32	N4BP2L1 (ENSBTAG00000000993) #33	N4BP2L2 (ENSBTAG00000023279) #36	PDS5B (ENSBTAG00000011597) #37	ENSBTAG00000052447
Hybrid Bos Indicus	MODERN SPECIES	3	PDX1 (ENSBIXG00005005368) #9	CDX2 (ENSBIXG00005000565) #10	ENSBIXG00005000568 #11	FLT3 (ENSBIXG00005005466) #12	PAN3 (ENSBIXG00005005472) #13	FLT1 (ENSBIXG00005010159) #14	POMP (ENSBIXG00005010225) #15	SLC46A3 (ENSBIXG00005000810) #16	MTUS2 (ENSBIXG00005010291) #17	SLC7A1 (ENSBIXG00005006772) #18	UBL3 (ENSBIXG00005010348) #19	ENSBIXG00005000793	KATNAL1 (ENSBIXG00005000876) #20	ENSBIXG00005006774	ENSBIXG00005010515 ##21	USPL1 (ENSBIXG00005010560) #22	ALOX5AP (ENSBIXG00005000697) #23	MEDAG (ENSBIXG00005010602) #24	TEX26 (ENSBIXG00005010612) #25	ENSBIXG00005000923	HSPH1 (ENSBIXG00005000953) #26	B3GLCT (ENSBIXG00005010902) #27	RXFP2 (ENSBIXG00005011060) #28	FRY (ENSBIXG00005011922) #30	ZAR1L (ENSBIXG00005001232) #31	BRCA2 (ENSBIXG00005016031) #32	N4BP2L1 (ENSBIXG00005016371) #33	ENSBIXG00005016425 #35	ENSBIXG00005016449	PDS5B (ENSBIXG00005016492) #37	KL (ENSBIXG00005016521)
Bos_a	ANCESTRAL SPECIES	19	ENSGT00390000003643 #7	ENSGT00940000162542 #9	ENSGT00940000161261 #10	ENSGT00390000002395 #11	ENSGT00940000160575 #12	ENSGT00390000001504 #13	ENSGT00940000164144	ENSGT00940000158713 #14	ENSGT00390000010734.j.b #15	ENSGT00950000183096.a.a.c.b #16	ENSGT00950000183026.B #17	ENSGT00940000155349 #18	ENSGT00390000004952.b #19	ENSGT00940000156630 #20	ENSGT00950000183120.e.b.a.a.a #21	ENSGT00390000002316 #22	ENSGT00940000158706 #23	ENSGT00390000018451 #24	ENSGT00390000009484 #25	ENSGT00940000162967	ENSGT00940000159635 #26	ENSGT00940000155499 #27	ENSGT00940000158948.b #28	ENSGT00610000086058.b #30	ENSGT00390000012305.b #31	ENSGT00390000003602 #32	ENSGT00940000161564 #33	ENSGT00900000143638	ENSGT00940000161440 #36	ENSGT00940000157257 #37	ENSGT00940000157614
Wild yak	MODERN SPECIES	1371						FLT3 (ENSBMUG00000023185) #12	PAN3 (ENSBMUG00000023150) #13	FLT1 (ENSBMUG00000023081) #14	POMP (ENSBMUG00000023007) #15	SLC46A3 (ENSBMUG00000023002) #16	MTUS2 (ENSBMUG00000022991) #17	SLC7A1 (ENSBMUG00000022964) #18	UBL3 (ENSBMUG00000022941) #19	KATNAL1 (ENSBMUG00000022930) #20	HMGB1 (ENSBMUG00000022917) #21	USPL1 (ENSBMUG00000022880) #22	ALOX5AP (ENSBMUG00000022869) #23	MEDAG (ENSBMUG00000022857) #24	TEX26 (ENSBMUG00000022841) #25	ENSBMUG00000022823	HSPH1 (ENSBMUG00000022797) #26	ENSBMUG00000022779	B3GLCT (ENSBMUG00000022771) #27
Domestic yak	MODERN SPECIES	6	PDX1 (ENSBGRG00000005259) #9	CDX2 (ENSBGRG00000005271) #10	ENSBGRG00000005297 #11	FLT3 (ENSBGRG00000005369) #12	PAN3 (ENSBGRG00000005813) #13	ENSBGRG00000006167	ENSBGRG00000006327 #14	POMP (ENSBGRG00000006553) #15	SLC46A3 (ENSBGRG00000006624) #16	MTUS2 (ENSBGRG00000006670) #17	SLC7A1 (ENSBGRG00000006751) #18	UBL3 (ENSBGRG00000006856) #19	KATNAL1 (ENSBGRG00000006924) #20	ENSBGRG00000007092 ##21	ENSBGRG00000007221	USPL1 (ENSBGRG00000007239) #22	ALOX5AP (ENSBGRG00000007328) #23	MEDAG (ENSBGRG00000007441) #24	TEX26 (ENSBGRG00000007537) #25	ENSBGRG00000007607	HSPH1 (ENSBGRG00000007830) #26	B3GLCT (ENSBGRG00000008659) #27	RXFP2 (ENSBGRG00000008963) #28	ENSBGRG00000009806	FRY (ENSBGRG00000010015) #30	ZAR1L (ENSBGRG00000014522) #31	ENSBGRG00000014613	BRCA2 (ENSBGRG00000014675) #32	N4BP2L1 (ENSBGRG00000015405) #33	ENSBGRG00000015571	ENSBGRG00000015604 #36
American bison	MODERN SPECIES	2991											ENSBBBG00000007933 #17	SLC7A1 (ENSBBBG00000012979) #18	UBL3 (ENSBBBG00000002574) #19	KATNAL1 (ENSBBBG00000012951) #20	HMGB1 (ENSBBBG00000012925) #21	USPL1 (ENSBBBG00000012899) #22	ALOX5AP (ENSBBBG00000012890) #23	MEDAG (ENSBBBG00000002541) #24	TEX26 (ENSBBBG00000012879) #25	ENSBBBG00000012863	HSPH1 (ENSBBBG00000002517) #26	B3GLCT (ENSBBBG00000001785) #27	RXFP2 (ENSBBBG00000012802) #28	FRY (ENSBBBG00000012719) #30	ZAR1L (ENSBBBG00000012271) #31	BRCA2 (ENSBBBG00000002305) #32	N4BP2L1 (ENSBBBG00000012150) #33	ENSBBBG00000012143	ENSBBBG00000002281 #35	PDS5B (ENSBBBG00000002271) #37	KL (ENSBBBG00000012053)
Siberian musk deer	MODERN SPECIES	18	GSX1 (ENSMMSG00000003020) #8	ENSMMSG00000003007	PDX1 (ENSMMSG00000002992) #9	CDX2 (ENSMMSG00000002973) #10	URAD (ENSMMSG00000002960)	FLT3 (ENSMMSG00000002901) #12	PAN3 (ENSMMSG00000002825) #13	FLT1 (ENSMMSG00000002716) #14	ENSMMSG00000002681 #15	SLC46A3 (ENSMMSG00000002652) #16	MTUS2 (ENSMMSG00000002573) #17	SLC7A1 (ENSMMSG00000002527) #18	UBL3 (ENSMMSG00000002504) #19	KATNAL1 (ENSMMSG00000002485) #20	ENSMMSG00000002453 ##21	USPL1 (ENSMMSG00000002424) #22	ALOX5AP (ENSMMSG00000002405) #23	MEDAG (ENSMMSG00000002386) #24	TEX26 (ENSMMSG00000002369) #25	HSPH1 (ENSMMSG00000002127) #26	B3GLCT (ENSMMSG00000002053) #27	RXFP2 (ENSMMSG00000001942) #28	ENSMMSG00000001920	FRY (ENSMMSG00000000954) #30	ZAR1L (ENSMMSG00000000732) #31	BRCA2 (ENSMMSG00000000412) #32	N4BP2L1 (ENSMMSG00000000325) #33	ENSMMSG00000000248 #36	ENSMMSG00000000223	PDS5B (ENSMMSG00000000057) #37	KL (ENSMMSG00000000017)
Yarkand deer	MODERN SPECIES	23	PDX1 (ENSCHYG00000018394) #9	CDX2 (ENSCHYG00000018350) #10	URAD (ENSCHYG00000018294)	FLT3 (ENSCHYG00000017983) #12	ENSCHYG00000017919	PAN3 (ENSCHYG00000017249) #13	FLT1 (ENSCHYG00000016765) #14	ENSCHYG00000016696	ENSCHYG00000016630 #15	SLC46A3 (ENSCHYG00000016561) #16	MTUS2 (ENSCHYG00000016049) #17	SLC7A1 (ENSCHYG00000015804) #18	UBL3 (ENSCHYG00000015723) #19	KATNAL1 (ENSCHYG00000015536) #20	ENSCHYG00000015436 ##21	USPL1 (ENSCHYG00000015344) #22	ALOX5AP (ENSCHYG00000015250) #23	ENSCHYG00000015226	MEDAG (ENSCHYG00000015182) #24	TEX26 (ENSCHYG00000015069) #25	ENSCHYG00000014786	HSPH1 (ENSCHYG00000014243) #26	B3GLCT (ENSCHYG00000026903) #27	RXFP2 (ENSCHYG00000026840) #28	ENSCHYG00000026824	ENSCHYG00000026819	ENSCHYG00000026805	ENSCHYG00000026798	FRY (ENSCHYG00000026531) #30	ZAR1L (ENSCHYG00000026455) #31	BRCA2 (ENSCHYG00000026430) #32