Bovidae	ANCESTRAL SPECIES	28	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.a.a #7	ENSGT01030000234624.b.a.b.a.a #8	ENSGT01030000234624.b.a.b.b #9	ENSGT01030000234624.b.a.b.a.b #10	ENSGT01030000234624.a.b #11	ENSGT01030000234624.a.a.a #12	ENSGT01030000234624.a.a.b ##12	ENSGT00940000155981 #14	ENSGT00940000160563 #15	ENSGT00940000156037.a #17	ENSGT00940000156453.a #18	ENSGT00390000011620.a.a.a #19	ENSGT00940000160354 #20	ENSGT00940000156352.l #21	ENSGT00940000159287 #22	ENSGT00940000162118 #24	ENSGT00390000017571 #25	ENSGT00940000155295.p #26	ENSGT00390000000444 #28	ENSGT00950000182917.b #29	ENSGT00940000155638 #30	ENSGT00390000004856.w.a.a.b.a #32	ENSGT00940000153902.a #33	ENSGT00940000156182 #34	ENSGT00390000009127 #35	ENSGT00940000157008 #36	ENSGT00510000048348 #37	ENSGT00400000022086.a	ENSGT00530000063835.b	ENSGT00940000160814
Bovinae	ANCESTRAL SPECIES	28	ENSGT01030000234624.b.a.b.a.a #8	ENSGT01030000234624.b.a.b.b #9	ENSGT01030000234624.b.a.b.a.b #10	ENSGT01030000234624.a.b #11	ENSGT01030000234624.a.a.a #12	ENSGT01030000234624.a.a.b ##12	ENSGT00940000155981 #14	ENSGT00390000016713.b	ENSGT00390000001562.b #16	ENSGT00940000160563 #15	ENSGT00940000156037.a #17	ENSGT00940000156453.a #18	ENSGT00390000011620.a.a.a #19	ENSGT00940000160354 #20	ENSGT00940000156352.l #21	ENSGT00940000159287 #22	ENSGT00940000162118 #24	ENSGT00390000017571 #25	ENSGT00940000155295.p #26	ENSGT00390000000444 #28	ENSGT00950000182917.b #29	ENSGT00940000155638 #30	ENSGT00390000004856.w.a.a.b.a #32	ENSGT00940000153902.a #33	ENSGT00940000156182 #34	ENSGT00390000009127 #35	ENSGT00940000157008 #36	ENSGT00510000048348 #37	ENSGT00400000022086.a	ENSGT00530000063835.b	ENSGT00940000160814
Bos	ANCESTRAL SPECIES	29	ENSGT01030000234624.b.a.b.a.a #8	ENSGT01030000234624.b.a.b.b #9	ENSGT01030000234624.b.a.b.a.b #10	ENSGT01030000234624.a.b #11	ENSGT01030000234624.a.a.a #12	ENSGT01030000234624.a.a.b ##12	ENSGT00940000155981 #14	ENSGT00390000016713.b	ENSGT00390000001562.b.b #16	ENSGT00940000160563 #15	ENSGT00940000156037.a #17	ENSGT00940000156453.a #18	ENSGT00390000011620.a.a.a #19	ENSGT00940000160354 #20	ENSGT00940000156352.l #21	ENSGT00940000159287 #22	ENSGT00940000162118 #24	ENSGT00390000017571 #25	ENSGT00940000155295.p #26	ENSGT00390000000444 #28	ENSGT00950000182917.b #29	ENSGT00940000155638 #30	ENSGT00940000153902.a #33	ENSGT00940000156182 #34	ENSGT00390000009127 #35	ENSGT00940000157008 #36	ENSGT00510000048348 #37	ENSGT00400000022086.a	ENSGT00530000063835.b	ENSGT00940000160814	ENSGT00390000012818.o.a.a.a.a.f
Bos_a	ANCESTRAL SPECIES	28	ENSGT01030000234624.b.a.a #7	ENSGT01030000234624.b.a.b.a.a #8	ENSGT01030000234624.b.a.b.b #9	ENSGT01030000234624.b.a.b.a.b #10	ENSGT01030000234624.a.b #11	ENSGT01030000234624.a.a.a #12	ENSGT01030000234624.a.a.b ##12	ENSGT00940000155981 #14	ENSGT00390000001562.b.b #16	ENSGT00940000160563 #15	ENSGT00940000156037.a #17	ENSGT00940000156453.a #18	ENSGT00390000011620.a.a.a #19	ENSGT00940000160354 #20	ENSGT00940000156352.l #21	ENSGT00940000159287 #22	ENSGT00940000162118 #24	ENSGT00390000017571 #25	ENSGT00940000155295.p #26	ENSGT00390000000444 #28	ENSGT00950000182917.b #29	ENSGT00940000155638 #30	ENSGT00940000153902.a #33	ENSGT00940000156182 #34	ENSGT00390000009127 #35	ENSGT00940000157008 #36	ENSGT00510000048348 #37	ENSGT00400000022086.a	ENSGT00530000063835.b	ENSGT00940000160814	ENSGT00940000156781
Domestic yak	MODERN SPECIES	13	DSG2 (ENSBGRG00000022705) #7	DSG3 (ENSBGRG00000022834) #8	DSG4 (ENSBGRG00000022932) #9	DSG1 (ENSBGRG00000023015) #10	DSC1 (ENSBGRG00000023106) #11	DSC2 (ENSBGRG00000023388) #12	ENSBGRG00000023902 #13	CDH2 (ENSBGRG00000023975) #14	CHST9 (ENSBGRG00000024193) #15	ENSBGRG00000024321 #16	AQP4 (ENSBGRG00000024349) #17	KCTD1 (ENSBGRG00000024405) #18	TAF4B (ENSBGRG00000024498) #19	PSMA8 (ENSBGRG00000024651) #20	SS18 (ENSBGRG00000024680) #21	ZNF521 (ENSBGRG00000024829) #22	ENSBGRG00000024872 #23	ENSBGRG00000024882 #24	IMPACT (ENSBGRG00000024891) #25	ENSBGRG00000024936 #26	ENSBGRG00000024973 #27	CABYR (ENSBGRG00000024984) #28	TTC39C (ENSBGRG00000025000) #29	LAMA3 (ENSBGRG00000025081) #30	ENSBGRG00000025723 #31	ENSBGRG00000025725 #32	ANKRD29 (ENSBGRG00000025736) #33	NPC1 (ENSBGRG00000025764) #34	RMC1 (ENSBGRG00000025776) #35	RIOK3 (ENSBGRG00000025788) #36	TMEM241 (ENSBGRG00000025847) #37
Wild yak	MODERN SPECIES	1833									ENSBMUG00000016450 #16	ENSBMUG00000016443 #15	AQP4 (ENSBMUG00000016437) #17	KCTD1 (ENSBMUG00000016424) #18	TAF4B (ENSBMUG00000016359) #19	PSMA8 (ENSBMUG00000016299) #20	ENSBMUG00000016291 ##21	ZNF521 (ENSBMUG00000016252) #22
Bos_b	ANCESTRAL SPECIES	34	ENSGT01030000234624.b.a.b.a.a #8	ENSGT01030000234624.b.a.b.b #9	ENSGT01030000234624.b.a.b.a.b #10	ENSGT01030000234624.a.b #11	ENSGT01030000234624.a.a.a #12	ENSGT01030000234624.a.a.b ##12	ENSGT00940000155981 #14	ENSGT00390000016713.b	ENSGT00940000160563 #15	ENSGT00390000001562.b.b #16	ENSGT00940000156037.a #17	ENSGT00940000156453.a #18	ENSGT00390000011620.a.a.a #19	ENSGT00940000160354 #20	ENSGT00940000156352.l #21	ENSGT00940000159287 #22	ENSGT00940000162118 #24	ENSGT00390000017571 #25	ENSGT00940000155295.p #26	ENSGT00390000000444 #28	ENSGT00950000182917.b #29	ENSGT00940000155638 #30	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.a.a.b #31	ENSGT00940000153902.a #33	ENSGT00940000156182 #34	ENSGT00390000009127 #35	ENSGT00940000157008 #36	ENSGT00510000048348 #37	ENSGT00400000022086.a	ENSGT00530000063835.b	ENSGT00940000160814
Cow	MODERN SPECIES	16	DSG4 (ENSBTAG00000040126) #9	DSG1 (ENSBTAG00000013831) #10	DSC1 (ENSBTAG00000019876) #11	DSC2 (ENSBTAG00000040584) #12	DSC3 (ENSBTAG00000015238) ##12	CDH2 (ENSBTAG00000021190) #14	ENSBTAG00000044212	CHST9 (ENSBTAG00000014082) #15	ENSBTAG00000034032 #16	AQP4 (ENSBTAG00000051072) #17	KCTD1 (ENSBTAG00000050380) #18	TAF4B (ENSBTAG00000004257) #19	PSMA8 (ENSBTAG00000017698) #20	SS18 (ENSBTAG00000011531) #21	ENSBTAG00000050912	ZNF521 (ENSBTAG00000007383) #22	HRH4 (ENSBTAG00000020467) #24	IMPACT (ENSBTAG00000003035) #25	OSBPL1A (ENSBTAG00000023259) #26	CABYR (ENSBTAG00000005638) #28	TTC39C (ENSBTAG00000005635) #29	ENSBTAG00000055205 #29	LAMA3 (ENSBTAG00000027181) #30	ENSBTAG00000051310 #31	ANKRD29 (ENSBTAG00000000517) #33	NPC1 (ENSBTAG00000015195) #34	RMC1 (ENSBTAG00000015190) #35	RIOK3 (ENSBTAG00000010042) #36	TMEM241 (ENSBTAG00000010037) #37	CABLES1 (ENSBTAG00000008705)	RBBP8 (ENSBTAG00000006743)
Hybrid Bos Indicus	MODERN SPECIES	16	B4GALT6 (ENSBIXG00005006868)	TTR (ENSBIXG00005017301)	DSG2 (ENSBIXG00005017262) #7	DSG1 (ENSBIXG00005017148) #10	DSC2 (ENSBIXG00005017035) #12	CDH2 (ENSBIXG00005016836) #14	ENSBIXG00005016729	CHST9 (ENSBIXG00005016684) #15	ENSBIXG00005002677 #16	AQP4 (ENSBIXG00005016607) #17	ENSBIXG00005016522	KCTD1 (ENSBIXG00005006350) #18	TAF4B (ENSBIXG00005016451) #19	PSMA8 (ENSBIXG00005016367) #20	SS18 (ENSBIXG00005016267) #21	ZNF521 (ENSBIXG00005016101) #22	HRH4 (ENSBIXG00005016024) #24	IMPACT (ENSBIXG00005016003) #25	ENSBIXG00005015918 #26	ENSBIXG00005015877 ##31	ENSBIXG00005015863 #28	TTC39C (ENSBIXG00005000166) #29	LAMA3 (ENSBIXG00005015748) #30	ENSBIXG00005015416	ANKRD29 (ENSBIXG00005015389) #33	NPC1 (ENSBIXG00005006342) #34	RMC1 (ENSBIXG00005002251) #35	RIOK3 (ENSBIXG00005015293) #36	TMEM241 (ENSBIXG00005002244) #37	CABLES1 (ENSBIXG00005015196)	RBBP8 (ENSBIXG00005002216)
American bison	MODERN SPECIES	3353	DSG3 (ENSBBBG00000005283) #8	DSG4 (ENSBBBG00000005298) #9	DSG1 (ENSBBBG00000019650) #10	DSC1 (ENSBBBG00000019687) #11	DSC2 (ENSBBBG00000019761) #12	DSC3 (ENSBBBG00000019832) ##12	CDH2 (ENSBBBG00000019864) #14	ENSBBBG00000019869	ENSBBBG00000006970 #16	CHST9 (ENSBBBG00000005388) #15	AQP4 (ENSBBBG00000019912) #17	ENSBBBG00000019929 #18	TAF4B (ENSBBBG00000005395) #19	PSMA8 (ENSBBBG00000019972) #20	SS18 (ENSBBBG00000020014) #21	ZNF521 (ENSBBBG00000020027) #22	HRH4 (ENSBBBG00000020050) #24	IMPACT (ENSBBBG00000020060) #25	ENSBBBG00000020113 #26	CABYR (ENSBBBG00000020139) #28	TTC39C (ENSBBBG00000020150) #29	ENSBBBG00000020155 #32	LAMA3 (ENSBBBG00000000608) #30	ANKRD29 (ENSBBBG00000000563) #33	NPC1 (ENSBBBG00000020529) #34	RMC1 (ENSBBBG00000005582) #35	RIOK3 (ENSBBBG00000020738) #36	TMEM241 (ENSBBBG00000020754) #37	CABLES1 (ENSBBBG00000020804)	RBBP8 (ENSBBBG00000020913)	ENSBBBG00000020946
Caprinae	ANCESTRAL SPECIES	25	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.a.a #7	ENSGT01030000234624.b.a.b.a.a #8	ENSGT01030000234624.b.a.b.b #9	ENSGT01030000234624.b.a.b.a.b #10	ENSGT01030000234624.a.b #11	ENSGT01030000234624.a.a.a #12	ENSGT01030000234624.a.a.b ##12	ENSGT00940000155981 #14	ENSGT00940000160563 #15	ENSGT00940000156037.a #17	ENSGT00940000156453.a #18	ENSGT00390000011620.a.a.a #19	ENSGT00940000160354 #20	ENSGT00940000156352.l #21	ENSGT00940000159287 #22	ENSGT00940000162118 #24	ENSGT00390000017571 #25	ENSGT00940000155295.p #26	ENSGT00390000000444 #28	ENSGT00950000182917.b #29	ENSGT00940000155638 #30	ENSGT00390000004856.w.a.a.b.a #32	ENSGT00940000153902.a #33	ENSGT00940000156182 #34	ENSGT00390000009127 #35	ENSGT00940000157008 #36	ENSGT00510000048348 #37	ENSGT00400000022086.a	ENSGT00530000063835.b	ENSGT00940000160814
Goat	MODERN SPECIES	16	DSG4 (ENSCHIG00000024819) #9	DSG1 (ENSCHIG00000019924) #10	DSC1 (ENSCHIG00000006661) #11	DSC2 (ENSCHIG00000020827) #12	DSC3 (ENSCHIG00000021926) ##12	ENSCHIG00000007130	CDH2 (ENSCHIG00000018662) #14	ENSCHIG00000003085	CHST9 (ENSCHIG00000021685) #15	AQP4 (ENSCHIG00000010124) #17	KCTD1 (ENSCHIG00000013103) #18	TAF4B (ENSCHIG00000022055) #19	PSMA8 (ENSCHIG00000018832) #20	ENSCHIG00000000490 ##21	SS18 (ENSCHIG00000000067) #21	ZNF521 (ENSCHIG00000000138) #22	HRH4 (ENSCHIG00000000251) #24	IMPACT (ENSCHIG00000000286) #25	OSBPL1A (ENSCHIG00000000386) #26	CABYR (ENSCHIG00000009351) #28	TTC39C (ENSCHIG00000009120) #29	LAMA3 (ENSCHIG00000013633) #30	ENSCHIG00000015951 #32	ANKRD29 (ENSCHIG00000018673) #33	ENSCHIG00000021287 #34	ENSCHIG00000024653 #35	RIOK3 (ENSCHIG00000009312) #36	TMEM241 (ENSCHIG00000011954) #37	CABLES1 (ENSCHIG00000024112)	RBBP8 (ENSCHIG00000013081)	GATA6 (ENSCHIG00000018847)
Rambouillet Sheep	MODERN SPECIES	15	TTR (ENSOARG00020024865)	DSG2 (ENSOARG00020024912) #7	DSG4 (ENSOARG00020024957) #9	DSG1 (ENSOARG00020024979) #10	DSC1 (ENSOARG00020024999) #11	DSC2 (ENSOARG00020025065) #12	ENSOARG00020025211	CDH2 (ENSOARG00020025259) #14	ENSOARG00020025350	CHST9 (ENSOARG00020025358) #15	AQP4 (ENSOARG00020025374) #17	KCTD1 (ENSOARG00020025395) #18	TAF4B (ENSOARG00020025408) #19	PSMA8 (ENSOARG00020025430) #20	SS18 (ENSOARG00020025456) #21	ZNF521 (ENSOARG00020025499) #22	HRH4 (ENSOARG00020025511) #24	ENSOARG00020025524 #25	OSBPL1A (ENSOARG00020025534) #26	CABYR (ENSOARG00020025548) #28	TTC39C (ENSOARG00020025558) #29	LAMA3 (ENSOARG00020025616) #30	ANKRD29 (ENSOARG00020025754) #33	ENSOARG00020025767 #34	RMC1 (ENSOARG00020025860) #35	RIOK3 (ENSOARG00020025882) #36	TMEM241 (ENSOARG00020025890) #37	CABLES1 (ENSOARG00020025896)	ENSOARG00020025903	ENSOARG00020025909	GATA6 (ENSOARG00020025920)