Rodentia ANCESTRAL SPECIES 12 ENSGT00390000011072 ENSGT00440000033985 ENSGT00940000154014.a ENSGT00940000158294 ENSGT00390000014996 ENSGT00550000074870.b ENSGT00390000014722 ENSGT00940000155925 ENSGT00940000157116 ENSGT00940000157866 ENSGT00390000002582 ENSGT00940000157852 #37 ENSGT00940000155142 #36 ENSGT00390000011176 #19 ENSGT00940000156175 #21 ENSGT00390000000481 #22 ENSGT00950000182882.A.b.a #27 ENSGT00940000153143.a.a.e.b ENSGT00940000153143.a.b.b.b ENSGT00940000153143.a.b.a ENSGT00940000168125 ENSGT00950000185265 ENSGT00940000153143.a.b.b.a.b.d.a ENSGT00940000153143.a.b.b.a.b.d.b.a.b ENSGT00940000155476 #28 ENSGT00940000161910 #29 ENSGT00940000160766 #30 ENSGT00940000161182 #31 ENSGT01030000234518.E.c.b ##32 ENSGT01030000234518.E.c.a #32 ENSGT00940000155994 #34 Rodentia_B ANCESTRAL SPECIES 40 ENSGT00390000015821 ENSGT00390000011072 ENSGT00940000154014.a ENSGT00940000158294 ENSGT00390000014996 ENSGT00550000074870.b ENSGT00390000014722 ENSGT00940000155925 ENSGT00940000157116 ENSGT00940000157866 ENSGT00390000002582 ENSGT00940000157852 #37 ENSGT00940000155142 #36 ENSGT00390000011176 #19 ENSGT00940000156175 #21 ENSGT00390000000481 #22 ENSGT00950000182882.A.b.a #27 ENSGT00940000153143.a.a.e.b ENSGT00940000153143.a.b.b.b ENSGT00940000153143.a.b.b.a.b.d.b.a.b ENSGT00940000155476 #28 ENSGT00940000161910 #29 ENSGT00940000160766 #30 ENSGT00940000161182 #31 ENSGT01030000234518.E.c.b ##32 ENSGT01030000234518.E.c.a #32 ENSGT00940000155994 #34 ENSGT00390000008427 Myomorpha ANCESTRAL SPECIES 50 ENSGT00390000015821 ENSGT00390000011072 ENSGT00940000154014.a ENSGT00940000158294 ENSGT00390000014996 ENSGT00550000074870.b ENSGT00390000014722 ENSGT00940000155925 ENSGT00940000157116 ENSGT00940000157866 ENSGT00390000002582 ENSGT00940000157852 #37 ENSGT00940000155142 #36 ENSGT00390000011176 #19 ENSGT00940000156175 #21 ENSGT00390000000481 #22 ENSGT00950000182882.A.b.a #27 ENSGT00940000153143.a.a.e.b ENSGT00940000153143.a.b.b.b ENSGT00940000153143.a.b.b.a.b.d.b.a.b ENSGT00940000155476 #28 ENSGT00940000161910 #29 ENSGT00940000160766 #30 ENSGT00940000161182 #31 ENSGT01030000234518.E.c.b ##32 ENSGT01030000234518.E.c.a #32 ENSGT00940000155994 #34 ENSGT00390000008427 Lesser Egyptian jerboa MODERN SPECIES 161 Yae1d1 (ENSJJAG00000017087) #19 ENSJJAG00000017234 #20 Pou6f2 (ENSJJAG00000020320) #21 Vps41 (ENSJJAG00000020760) #22 ENSJJAG00000020912 #23 ENSJJAG00000021435 #24 ENSJJAG00000021560 #25 ENSJJAG00000021910 #26 Amph (ENSJJAG00000022889) #27 Stard3nl (ENSJJAG00000023909) #28 Epdr1 (ENSJJAG00000024132) #29 Sfrp4 (ENSJJAG00000024190) #30 Nme8 (ENSJJAG00000000267) #31 Gpr141 (ENSJJAG00000012473) #32 ENSJJAG00000000615 #33 Elmo1 (ENSJJAG00000003658) #34 9530077C05Rik (ENSJJAG00000005276) #35 Rala (ENSJJAG00000006484) #36 ENSJJAG00000007969 #37 Muroidea ANCESTRAL SPECIES 78 ENSGT00940000158294 ENSGT00390000014996 ENSGT00550000074870.b ENSGT00390000014722 ENSGT00940000155925 ENSGT00940000157116 ENSGT00940000157866 ENSGT00390000002582 ENSGT00940000157852 #37 ENSGT00940000155142 #36 ENSGT00390000011176 #19 ENSGT00940000156175 #21 ENSGT00390000000481 #22 ENSGT00950000182882.A.b.a #27 ENSGT00940000153143.a.a.e.b ENSGT00940000153143.a.b.b.b ENSGT00940000153143.a.b.b.a.b.d.b.a.b ENSGT00940000155476 #28 ENSGT00940000161910 #29 ENSGT00940000160766 #30 ENSGT00940000161182 #31 ENSGT01030000234518.E.c.b ##32 ENSGT01030000234518.E.c.a #32 ENSGT00940000155994 #34 ENSGT00390000008427 Muroidea_A ANCESTRAL SPECIES 14 ENSGT00530000063405.a ENSGT00940000153498.A ENSGT00940000158149 ENSGT00940000158294 ENSGT00390000014996 ENSGT00550000074870.b ENSGT00390000014722 ENSGT00940000155925 ENSGT00940000157116 ENSGT00940000157866 ENSGT00390000002582 ENSGT00940000157852 #37 ENSGT00940000155142 #36 ENSGT00390000011176 #19 ENSGT00940000156175 #21 ENSGT00390000000481 #22 ENSGT00950000182882.A.b.a #27 ENSGT00940000153143.a.a.e.b ENSGT00940000153143.a.b.b.b ENSGT00940000153143.a.b.b.a.b.d.b.a.b ENSGT00940000155476 #28 ENSGT00940000161910 #29 ENSGT00940000160766 #30 ENSGT00940000161182 #31 ENSGT01030000234518.E.c.b ##32 ENSGT01030000234518.E.c.a #32 ENSGT00940000155994 #34 ENSGT00390000008427 ENSGT01100000263548.a.a.b ENSGT01100000263486.a.b.a.a.b ENSGT01100000263486.a.b.a.a.a.b Cricetidae ANCESTRAL SPECIES 7 ENSGT00530000063405.a ENSGT00940000153498.A ENSGT00940000158149 ENSGT00940000158294 ENSGT00390000014996 ENSGT00550000074870.b ENSGT00390000014722 ENSGT00940000155925 ENSGT00940000157116 ENSGT00940000157866 ENSGT00390000002582 ENSGT00940000157852 #37 ENSGT00940000155142 #36 ENSGT00390000011176 #19 ENSGT00940000156175 #21 ENSGT00390000000481 #22 ENSGT00950000182882.A.b.a #27 ENSGT00940000153143.a.b.b.a.b.d.b.a.b ENSGT00940000155476 #28 ENSGT00940000161910 #29 ENSGT00940000160766 #30 ENSGT00940000161182 #31 ENSGT01030000234518.E.c.b ##32 ENSGT01030000234518.E.c.a #32 ENSGT00940000155994 #34 ENSGT00390000008427 ENSGT01100000263548.a.a.b ENSGT01100000263486.a.b.a.a.b ENSGT01100000263486.a.b.a.a.a.b ENSGT00940000158537 ENSGT00940000163329 Cricetinae ANCESTRAL SPECIES 26 ENSGT00530000063405.a ENSGT00940000153498.A ENSGT00940000158149 ENSGT00940000158294 ENSGT00390000014996 ENSGT00550000074870.b ENSGT00390000014722 ENSGT00940000155925 ENSGT00940000157116 ENSGT00940000157866 ENSGT00390000002582 ENSGT00940000157852 #37 ENSGT00940000155142 #36 ENSGT00390000011176 #19 ENSGT00940000156175 #21 ENSGT00390000000481 #22 ENSGT00950000182882.A.b.a #27 ENSGT00940000153143.a.b.b.a.b.d.b.a.b ENSGT00940000155476 #28 ENSGT00940000164413 ENSGT00940000160766 #30 ENSGT00940000161182 #31 ENSGT01030000234518.E.c.b ##32 ENSGT01030000234518.E.c.a #32 ENSGT00940000155994 #34 ENSGT00390000008427 ENSGT01100000263548.a.a.b ENSGT01100000263486.a.b.a.a.b ENSGT01100000263486.a.b.a.a.a.b ENSGT00940000158537 ENSGT00940000163329 Chinese hamster chok1gshd MODERN SPECIES 317 Arid4b (ENSCGRG00001014397) Hecw1 (ENSCGRG00001018493) Mrpl32 (ENSCGRG00001016443) Psma2 (ENSCGRG00001023927) AW209491 (ENSCGRG00001006859) Gli3 (ENSCGRG00001007632) Inhba (ENSCGRG00001019473) Sugct (ENSCGRG00001009192) ENSCGRG00001011481 Cdk13 (ENSCGRG00001020334) #37 ENSCGRG00001012449 #36 Yae1d1 (ENSCGRG00001020898) #19 ENSCGRG00001025025 #21 ENSCGRG00001010504 #21 ENSCGRG00001005827 Vps41 (ENSCGRG00001018659) #22 Amph (ENSCGRG00001019554) #27 ENSCGRG00001009580 Stard3nl (ENSCGRG00001000801) #28 Epdr1 (ENSCGRG00001014717) Sfrp4 (ENSCGRG00001016880) #30 Nme8 (ENSCGRG00001019516) #31 Gpr141b (ENSCGRG00001009813) ##32 Gpr141 (ENSCGRG00001008158) #32 Elmo1 (ENSCGRG00001019058) #34 Aoah (ENSCGRG00001000322) Or2p2 (ENSCGRG00001007809) ENSCGRG00001024092 ENSCGRG00001005805 Or2ad1 (ENSCGRG00001009160) Trim27 (ENSCGRG00001018921) Golden Hamster MODERN SPECIES 646 Tbce (ENSMAUG00000013936) ENSMAUG00000021330 ENSMAUG00000012797 Hecw1 (ENSMAUG00000003157) Mrpl32 (ENSMAUG00000019188) Psma2 (ENSMAUG00000009719) AW209491 (ENSMAUG00000007021) Gli3 (ENSMAUG00000010007) Inhba (ENSMAUG00000021024) Sugct (ENSMAUG00000009567) ENSMAUG00000016486 Cdk13 (ENSMAUG00000017760) #37 Rala (ENSMAUG00000008652) #36 Yae1d1 (ENSMAUG00000015770) #19 ENSMAUG00000013131 #21 Vps41 (ENSMAUG00000018045) #22 ENSMAUG00000015422 #27 Stard3nl (ENSMAUG00000014492) #28 Epdr1 (ENSMAUG00000004400) Sfrp4 (ENSMAUG00000018868) #30 Nme8 (ENSMAUG00000016668) #31 Gpr141 (ENSMAUG00000008686) #32 Elmo1 (ENSMAUG00000021051) #34 Cricetidae_B ANCESTRAL SPECIES 5 ENSGT00530000063405.a ENSGT00940000153498.A ENSGT00940000158149 ENSGT00940000158294 ENSGT00390000014996 ENSGT00550000074870.b ENSGT00390000014722 ENSGT00940000155925 ENSGT00940000157116 ENSGT00940000157866 ENSGT00390000002582 ENSGT00940000157852 #37 ENSGT00940000155142 #36 ENSGT00390000011176 #19 ENSGT00940000156175 #21 ENSGT00390000000481 #22 ENSGT00950000182882.A.b.a #27 ENSGT00940000153143.a.b.b.a.b.d.b.a.b ENSGT00940000155476 #28 ENSGT00940000161910 #29 ENSGT00940000160766 #30 ENSGT00940000161182 #31 ENSGT01030000234518.E.c.b ##32 ENSGT01030000234518.E.c.a #32 ENSGT00940000155994 #34 ENSGT00390000008427 ENSGT01100000263548.a.a.b ENSGT01100000263486.a.b.a.a.b ENSGT01100000263486.a.b.a.a.a.b ENSGT00940000158537 ENSGT00940000161098.b.a Northern American deer mouse MODERN SPECIES 18 Psma2 (ENSPEMG00000000680) AW209491 (ENSPEMG00000016335) ENSPEMG00000026547 ENSPEMG00000011637 Gli3 (ENSPEMG00000022194) ENSPEMG00000001076 Inhba (ENSPEMG00000030253) ENSPEMG00000028161 Sugct (ENSPEMG00000020290) ENSPEMG00000026169 Cdk13 (ENSPEMG00000020703) #37 ENSPEMG00000027212 Rala (ENSPEMG00000026406) #36 Yae1d1 (ENSPEMG00000026901) #19 ENSPEMG00000020563 #21 Vps41 (ENSPEMG00000022150) #22 Amph (ENSPEMG00000001572) #27 ENSPEMG00000030093 ENSPEMG00000030898 Stard3nl (ENSPEMG00000012415) #28 Epdr1 (ENSPEMG00000028013) #29 Sfrp4 (ENSPEMG00000023817) #30 Nme8 (ENSPEMG00000021510) #31 Gpr141b (ENSPEMG00000029118) ##32 Gpr141 (ENSPEMG00000004105) #32 ENSPEMG00000027404 Elmo1 (ENSPEMG00000018278) #34 Aoah (ENSPEMG00000010535) Or2p2 (ENSPEMG00000005086) ENSPEMG00000022745 Or2ad1 (ENSPEMG00000001338) Prairie vole MODERN SPECIES 85 Hecw1 (ENSMOCG00000001967) Mrpl32 (ENSMOCG00000000157) ENSMOCG00000013606 AW209491 (ENSMOCG00000022967) ENSMOCG00000014175 Gli3 (ENSMOCG00000018186) Inhba (ENSMOCG00000001049) Sugct (ENSMOCG00000021393) ENSMOCG00000013905 Cdk13 (ENSMOCG00000018212) #37 Rala (ENSMOCG00000000189) #36 Yae1d1 (ENSMOCG00000012487) #19 ENSMOCG00000015726 #21 ENSMOCG00000005809 ENSMOCG00000004652 Vps41 (ENSMOCG00000018741) #22 Murinae ANCESTRAL SPECIES 27 ENSGT00530000063405.a ENSGT00940000153498.A ENSGT00940000158149 ENSGT00940000158294 ENSGT00390000014996 ENSGT00550000074870.b ENSGT00390000014722 ENSGT00940000155925 ENSGT00940000157116 ENSGT00940000157866 ENSGT00390000002582 ENSGT00940000157852 #37 ENSGT00940000155142 #36 ENSGT00390000011176 #19 ENSGT00940000156175 #21 ENSGT00390000000481 #22 ENSGT00950000182882.A.b.a #27 ENSGT00940000153143.a.a.e.b ENSGT00940000153143.a.b.b.b ENSGT00940000153143.a.b.b.a.b.d.b.a.b ENSGT00940000155476 #28 ENSGT00940000161910 #29 ENSGT00940000160766 #30 ENSGT00940000161182 #31 ENSGT01030000234518.E.c.b ##32 ENSGT01030000234518.E.c.a #32 ENSGT00940000155994 #34 ENSGT00390000008427 ENSGT01100000263548.a.a.b ENSGT01100000263486.a.b.a.a.b ENSGT01100000263486.a.b.a.a.a.b Mus ANCESTRAL SPECIES 18 ENSGT00530000063405.a ENSGT00940000153498.A ENSGT00940000158149 ENSGT00940000158294 ENSGT00390000014996 ENSGT00550000074870.b ENSGT00390000014722 ENSGT00940000155925 ENSGT00940000157116 ENSGT00940000157866 ENSGT00390000002582 ENSGT00940000157852 #37 ENSGT00940000155142 #36 ENSGT00390000011176 #19 ENSGT00940000156175 #21 ENSGT00390000000481 #22 ENSGT00950000182882.A.b.a #27 ENSGT00940000153143.a.a.e.b ENSGT00940000153143.a.b.b.b.j ENSGT00940000153143.a.b.a ENSGT00940000168125 ENSGT00950000186470 ENSGT00860000135699 ENSGT00940000153143.a.b.b.b.i ENSGT00940000153143.a.b.b.a.b.d.b.a.b ENSGT00940000155476 #28 ENSGT00940000161910 #29 ENSGT00940000160766 #30 ENSGT00940000161182 #31 ENSGT01030000234518.E.c.b ##32 ENSGT01030000234518.E.c.a #32 Mus_A ANCESTRAL SPECIES 14 ENSGT00530000063405.a ENSGT00940000153498.A ENSGT00940000158149 ENSGT00940000158294 ENSGT00390000014996.db ENSGT00550000074870.b ENSGT00390000014722 ENSGT00940000155925 ENSGT00940000157116 ENSGT00940000157866 ENSGT00390000002582 ENSGT00940000157852 #37 ENSGT00940000155142 #36 ENSGT00390000011176 #19 ENSGT00940000156175 #21 ENSGT00390000000481 #22 ENSGT00950000182882.A.b.a #27 ENSGT00940000153143.a.a.e.b ENSGT00940000153143.a.b.b.b.j ENSGT00940000153143.a.b.a ENSGT00940000168125 ENSGT00950000186470 ENSGT00860000135699 ENSGT00940000153143.a.b.b.b.i ENSGT00940000153143.a.b.b.a.b.d.b.a.b ENSGT00940000155476 #28 ENSGT00940000161910 #29 ENSGT00940000160766 #30 ENSGT00940000161182 #31 ENSGT01030000234518.E.c.b ##32 ENSGT01030000234518.E.c.a #32 Mus_B ANCESTRAL SPECIES 13 ENSGT00530000063405.a ENSGT00940000153498.A ENSGT00940000158149 ENSGT00940000158294 ENSGT00390000014996.db ENSGT00550000074870.b ENSGT00390000014722 ENSGT00940000155925 ENSGT00940000157116 ENSGT00940000157866 ENSGT00390000002582 ENSGT00940000157852 #37 ENSGT00940000155142 #36 ENSGT00390000011176 #19 ENSGT00940000156175 #21 ENSGT00390000000481 #22 ENSGT00950000182882.A.b.a #27 ENSGT00940000153143.a.a.e.b ENSGT00940000153143.a.b.b.b.j ENSGT00980000200102 ENSGT00940000168125 ENSGT00950000186470 ENSGT00860000135699 ENSGT00940000153143.a.b.b.a.b.d.b.a.b.d ENSGT00940000155476 #28 ENSGT00940000161910 #29 ENSGT00940000160766 #30 ENSGT00940000161182 #31 ENSGT01030000234518.E.c.b ##32 ENSGT01030000234518.E.c.a #32 ENSGT00940000155994 #34 Mouse MODERN SPECIES 4 Tbce (ENSMUSG00000039233) Ggps1 (ENSMUSG00000021302) Arid4b (ENSMUSG00000039219) Hecw1 (ENSMUSG00000021301) Mrpl32 (ENSMUSG00000015672) Psma2 (ENSMUSG00000015671) AW209491 (ENSMUSG00000039182) Gli3 (ENSMUSG00000021318) Inhba (ENSMUSG00000041324) Sugct (ENSMUSG00000055137) Mplkip (ENSMUSG00000012429) Cdk13 (ENSMUSG00000041297) #37 Rala (ENSMUSG00000008859) #36 Yae1d1 (ENSMUSG00000075054) #19 Pou6f2 (ENSMUSG00000009734) #21 Vps41 (ENSMUSG00000041236) #22 Amph (ENSMUSG00000021314) #27 Trgv7 (ENSMUSG00000076744) Trgv4 (ENSMUSG00000076745) Trgv6 (ENSMUSG00000076746) Trgv5 (ENSMUSG00000076747) Trgj1 (ENSMUSG00000104962) Trgc1 (ENSMUSG00000076749) Trgv3 (ENSMUSG00000076750) Trgj3 (ENSMUSG00000104630) Trgc3 (ENSMUSG00000091682) Trgc2 (ENSMUSG00000076752) Trgj2 (ENSMUSG00000105830) Trgv2 (ENSMUSG00000076754) Trgv1 (ENSMUSG00000076755) Trgj4 (ENSMUSG00000098799) Mus_C ANCESTRAL SPECIES 10 ENSGT00530000063405.a ENSGT00940000153498.A ENSGT00940000158149 ENSGT00940000158294 ENSGT00390000014996.db ENSGT00550000074870.b ENSGT00390000014722 ENSGT00940000155925 ENSGT00940000157116 ENSGT00940000157866 ENSGT00390000002582 ENSGT00940000157852 #37 ENSGT00940000155142 #36 ENSGT00390000011176 #19 ENSGT00940000156175 #21 ENSGT00390000000481 #22 ENSGT00950000182882.A.b.a #27 ENSGT00940000153143.a.a.e.b ENSGT00940000153143.a.b.b.b.j ENSGT00980000200102 ENSGT00940000168125 ENSGT00950000186470 ENSGT00860000135699 ENSGT00940000153143.a.b.b.a.b.d.b.a.b.d ENSGT00940000155476 #28 ENSGT00940000161910 #29 ENSGT00940000160766 #30 ENSGT00940000161182 #31 ENSGT01030000234518.E.c.b ##32 ENSGT01030000234518.E.c.a #32 ENSGT00940000155994 #34 spretus MODERN SPECIES 4 B3galnt2 (MGP_SPRETEiJ_G0019091) Tbce (MGP_SPRETEiJ_G0019092) MGP_SPRETEiJ_G0019093 Arid4b (MGP_SPRETEiJ_G0019094) Hecw1 (MGP_SPRETEiJ_G0019095) Mrpl32 (MGP_SPRETEiJ_G0019096) Psma2 (MGP_SPRETEiJ_G0019097) AW209491 (MGP_SPRETEiJ_G0019098) Gli3 (MGP_SPRETEiJ_G0019099) Inhba (MGP_SPRETEiJ_G0019100) MGP_SPRETEiJ_G0019101 Cdk13 (MGP_SPRETEiJ_G0019102) #37 Rala (MGP_SPRETEiJ_G0019103) #36 Yae1d1 (MGP_SPRETEiJ_G0019104) #19 Pou6f2 (MGP_SPRETEiJ_G0019105) #21 Vps41 (MGP_SPRETEiJ_G0019106) #22 MGP_SPRETEiJ_G0019107 #27 Trgv7 (MGP_SPRETEiJ_G0002330) Trgv4 (MGP_SPRETEiJ_G0002331) Trgv6 (MGP_SPRETEiJ_G0002332) Trgv5 (MGP_SPRETEiJ_G0002333) Trgj3 (MGP_SPRETEiJ_G0002253) Trgj4 (MGP_SPRETEiJ_G0002254) Trgc4 (MGP_SPRETEiJ_G0002244) Stard3nl (MGP_SPRETEiJ_G0019108) #28 Epdr1 (MGP_SPRETEiJ_G0019109) #29 MGP_SPRETEiJ_G0019110 #30 Nme8 (MGP_SPRETEiJ_G0019111) #31 Gpr141b (MGP_SPRETEiJ_G0019112) ##32 Gpr141 (MGP_SPRETEiJ_G0019113) #32 Elmo1 (MGP_SPRETEiJ_G0019114) #34 Steppe mouse MODERN SPECIES 130 ENSMSIG00000002339 ENSMSIG00000002438 ENSMSIG00000002458 Cdk13 (ENSMSIG00000002486) #37 Rala (ENSMSIG00000002581) #36 Yae1d1 (ENSMSIG00000002612) #19 Pou6f2 (ENSMSIG00000002639) #21 Vps41 (ENSMSIG00000002761) #22 ENSMSIG00000003046 #27 Ryukyu mouse MODERN SPECIES 4 Ggps1 (MGP_CAROLIEiJ_G0018235) Arid4b (MGP_CAROLIEiJ_G0018236) Hecw1 (MGP_CAROLIEiJ_G0018237) Mrpl32 (MGP_CAROLIEiJ_G0018238) Psma2 (MGP_CAROLIEiJ_G0018239) AW209491 (MGP_CAROLIEiJ_G0018240) Gli3 (MGP_CAROLIEiJ_G0018241) Inhba (MGP_CAROLIEiJ_G0018242) Sugct (MGP_CAROLIEiJ_G0018243) MGP_CAROLIEiJ_G0018244 MGP_CAROLIEiJ_G0018245 Cdk13 (MGP_CAROLIEiJ_G0018246) #37 Rala (MGP_CAROLIEiJ_G0018247) #36 Yae1d1 (MGP_CAROLIEiJ_G0018248) #19 Pou6f2 (MGP_CAROLIEiJ_G0018249) #21 Vps41 (MGP_CAROLIEiJ_G0018250) #22 MGP_CAROLIEiJ_G0018251 #27 Trgv7 (MGP_CAROLIEiJ_G0002202) Trgv4 (MGP_CAROLIEiJ_G0002203) MGP_CAROLIEiJ_G0002204 Trgv5 (MGP_CAROLIEiJ_G0002205) Trgj3 (MGP_CAROLIEiJ_G0002126) MGP_CAROLIEiJ_G0002206 MGP_CAROLIEiJ_G0002207 MGP_CAROLIEiJ_G0002208 Trgj4 (MGP_CAROLIEiJ_G0002127) Trgc4 (MGP_CAROLIEiJ_G0002118) Stard3nl (MGP_CAROLIEiJ_G0018252) #28 Epdr1 (MGP_CAROLIEiJ_G0018253) #29 MGP_CAROLIEiJ_G0018254 #30 Nme8 (MGP_CAROLIEiJ_G0018255) #31 Shrew mouse MODERN SPECIES 7 Ggps1 (MGP_PahariEiJ_G0019285) Arid4b (MGP_PahariEiJ_G0019286) Hecw1 (MGP_PahariEiJ_G0019287) Mrpl32 (MGP_PahariEiJ_G0019288) Psma2 (MGP_PahariEiJ_G0019289) AW209491 (MGP_PahariEiJ_G0019290) Gli3 (MGP_PahariEiJ_G0019291) Inhba (MGP_PahariEiJ_G0019292) Sugct (MGP_PahariEiJ_G0019293) MGP_PahariEiJ_G0019294 MGP_PahariEiJ_G0019295 Cdk13 (MGP_PahariEiJ_G0019296) #37 Rala (MGP_PahariEiJ_G0019297) #36 Yae1d1 (MGP_PahariEiJ_G0019298) #19 Pou6f2 (MGP_PahariEiJ_G0019299) #21 Vps41 (MGP_PahariEiJ_G0019300) #22 MGP_PahariEiJ_G0019301 #27 Trgv7 (MGP_PahariEiJ_G0002039) Trgv4 (MGP_PahariEiJ_G0002040) MGP_PahariEiJ_G0002041 Trgv5 (MGP_PahariEiJ_G0002042) Trgj3 (MGP_PahariEiJ_G0001962) Trgj4 (MGP_PahariEiJ_G0001963) Trgc4 (MGP_PahariEiJ_G0001956) Stard3nl (MGP_PahariEiJ_G0019302) #28 Epdr1 (MGP_PahariEiJ_G0019303) #29 MGP_PahariEiJ_G0019304 #30 Nme8 (MGP_PahariEiJ_G0019305) #31 Gpr141b (MGP_PahariEiJ_G0019306) ##32 Gpr141 (MGP_PahariEiJ_G0019307) #32 Elmo1 (MGP_PahariEiJ_G0019308) #34 Rat MODERN SPECIES 8 Hecw1 (ENSRNOG00000016046) Mrpl32 (ENSRNOG00000015989) Psma2 (ENSRNOG00000049920) RGD1308147 (ENSRNOG00000015523) Gabpb1l (ENSRNOG00000053439) Psme1-ps1 (ENSRNOG00000061359) Gli3 (ENSRNOG00000014395) Inhba (ENSRNOG00000014320) Sugct (ENSRNOG00000066247) Mplkip (ENSRNOG00000013806) Cdk13 (ENSRNOG00000013620) #37 Rala (ENSRNOG00000013454) #36 Yae1 (ENSRNOG00000013438) #19 AABR07027925.2 (ENSRNOG00000030925) Pou6f2 (ENSRNOG00000013237) #21 Vps41 (ENSRNOG00000012940) #22 LOC100910792 (ENSRNOG00000059510) #27 ENSRNOG00000070051 AABR07027872.1 (ENSRNOG00000055197) ENSRNOG00000066100 ENSRNOG00000063508 Stard3nl (ENSRNOG00000052429) #28 LOC498759 (ENSRNOG00000050687) Epdr1 (ENSRNOG00000060141) Nme8 (ENSRNOG00000058285) #31 Sfrp4 (ENSRNOG00000054957) #30 Gpr141 (ENSRNOG00000066332) #32 Elmo1 (ENSRNOG00000059705) #34 ENSRNOG00000065006 Aoah (ENSRNOG00000054964) Or2p2 (ENSRNOG00000066002) Upper Galilee mountains blind mole rat MODERN SPECIES 1587 Vps41 (ENSNGAG00000011171) #22 Kangaroo rat MODERN SPECIES 480 ENSDORG00000010332 Hecw1 (ENSDORG00000011163) Mrpl32 (ENSDORG00000011748) Psma2 (ENSDORG00000011746) AW209491 (ENSDORG00000026137) Gli3 (ENSDORG00000001532) ENSDORG00000001744 Sugct (ENSDORG00000001011) ENSDORG00000001010 ENSDORG00000028130 #37 ENSDORG00000027169 Rala (ENSDORG00000024439) #36 Yae1d1 (ENSDORG00000009759) #19 Pou6f2 (ENSDORG00000011157) #21 Vps41 (ENSDORG00000015881) #22 ENSDORG00000023528 Amph (ENSDORG00000000364) #27 Trgc4 (ENSDORG00000029771) ENSDORG00000015981 #31 ENSDORG00000025334 ENSDORG00000014695 Rodentia_A ANCESTRAL SPECIES 12 ENSGT00390000011072 ENSGT00440000033985 ENSGT00940000154014.a ENSGT00940000158294 ENSGT00390000014996 ENSGT00550000074870.b ENSGT00390000014722 ENSGT00940000155925 ENSGT00940000157116 ENSGT00940000157866 ENSGT00390000002582 ENSGT00940000157852 #37 ENSGT00940000155142 #36 ENSGT00390000011176 #19 ENSGT00940000156175 #21 ENSGT00390000000481 #22 ENSGT00950000182882.A.b.a #27 ENSGT00940000153143.a.a.e.a ENSGT00940000153143.a.b.b.b ENSGT00940000153143.a.b.b.a.b.d.b.a.b ENSGT00950000185265 ENSGT00940000153143.a.b.b.a.b.d.a ENSGT00940000155476 #28 ENSGT00940000161910 #29 ENSGT00940000160766 #30 ENSGT00940000161182 #31 ENSGT01030000234518.E.c.b ##32 ENSGT01030000234518.E.c.a #32 ENSGT00940000155994 #34 ENSGT00390000008427 ENSGT00390000008749.e Hystricomorpha ANCESTRAL SPECIES 17 ENSGT00390000011072 ENSGT00440000033985 ENSGT00940000154014.a ENSGT00940000158294 ENSGT00390000014996 ENSGT00550000074870.b ENSGT00390000014722 ENSGT00940000155925 ENSGT00940000157116 ENSGT00940000157866 ENSGT00390000002582 ENSGT00940000157852 #37 ENSGT00940000155142 #36 ENSGT00390000011176 #19 ENSGT00940000156175 #21 ENSGT00390000000481 #22 ENSGT00950000182882.A.b.a #27 ENSGT00940000153143.a.a.e.a ENSGT00940000153143.a.b.b.b ENSGT00940000153143.a.b.b.a.b.d.b.a.b ENSGT00950000185265 ENSGT00940000153143.a.b.b.a.b.d.a ENSGT00940000155476 #28 ENSGT00940000161910 #29 ENSGT00940000160766 #30 ENSGT00940000161182 #31 ENSGT01030000234518.E.c.b ##32 ENSGT01030000234518.E.c.a #32 ENSGT00940000155994 #34 ENSGT00390000008427 ENSGT00390000008749.e Hystricomorpha_a ANCESTRAL SPECIES 16 ENSGT00390000011072 ENSGT00440000033985 ENSGT00940000154014.a ENSGT00940000158294 ENSGT00390000014996 ENSGT00550000074870.b ENSGT00390000014722 ENSGT00940000155925 ENSGT00940000157116 ENSGT00940000157866 ENSGT00390000002582 ENSGT00940000157852 #37 ENSGT00940000155142 #36 ENSGT00390000011176 #19 ENSGT00940000156175 #21 ENSGT00390000000481 #22 ENSGT00950000182882.A.b.a #27 ENSGT00940000153143.a.b.b.a.b.d.b.a.a.b.b ENSGT00940000153143.a.b.b.a.a.a ENSGT00940000153143.a.b.b.a.b.d.b.b ENSGT00940000153143.a.b.b.a.b.d.a ENSGT00940000155476 #28 ENSGT00940000161910 #29 ENSGT00940000160766 #30 ENSGT00940000161182 #31 ENSGT01030000234518.E.c.b ##32 ENSGT01030000234518.E.c.a #32 ENSGT00940000155994 #34 ENSGT00390000008427 ENSGT00390000008749.e ENSGT00390000004417.a #35 Hystricomorpha_b ANCESTRAL SPECIES 55 ENSGT00390000011072 ENSGT00940000154014.a ENSGT00940000158294 ENSGT00390000014996 ENSGT00550000074870.b ENSGT00390000014722 ENSGT00940000155925 ENSGT00940000157116 ENSGT00940000157866 ENSGT00390000002582 ENSGT00940000157852 #37 ENSGT00940000155142 #36 ENSGT00390000011176 #19 ENSGT00940000156175 #21 ENSGT00390000000481 #22 ENSGT00950000182882.A.b.a #27 ENSGT00940000153143.a.b.b.a.a.a ENSGT00940000153143.a.b.b.a.b.d.b.b ENSGT00940000153143.a.b.b.a.b.d.a ENSGT00940000155476 #28 ENSGT00940000161910 #29 ENSGT00940000160766 #30 ENSGT00940000161182 #31 ENSGT01030000234518.E.c.a #32 ENSGT00940000155994 #34 ENSGT00390000008427 ENSGT00390000008749.e ENSGT00390000004417.a #35 ENSGT00390000009677 ENSGT00940000154222.d.b.d.b.o.a Degu DUPLICATION Degu MODERN SPECIES 72 RP9 (ENSODEG00000009275) BLVRA (ENSODEG00000007949) STK17A (ENSODEG00000007337) HECW1 (ENSODEG00000009462) MRPL32 (ENSODEG00000008658) ENSODEG00000008580 C7orf25 (ENSODEG00000019542) GLI3 (ENSODEG00000008109) INHBA (ENSODEG00000007905) SUGCT (ENSODEG00000008687) ENSODEG00000008104 ENSODEG00000008309 #37 RALA (ENSODEG00000007864) #36 YAE1 (ENSODEG00000007300) #19 POU6F2 (ENSODEG00000009460) #21 ENSODEG00000007666 #22 ENSODEG00000009633 #22 AMPH (ENSODEG00000010210) #27 ENSODEG00000010348 ENSODEG00000009018 STARD3NL (ENSODEG00000007720) #28 EPDR1 (ENSODEG00000008299) #29 SFRP4 (ENSODEG00000008477) #30 NME8 (ENSODEG00000008055) #31 ELMO1 (ENSODEG00000008951) #34 AOAH (ENSODEG00000009152) ANLN (ENSODEG00000008115) MATCAP2 (ENSODEG00000010906) #35 EEPD1 (ENSODEG00000007785) ENSODEG00000013004 HERPUD2 (ENSODEG00000010736) Degu MODERN SPECIES 72 BLVRA (ENSODEG00000007949) STK17A (ENSODEG00000007337) HECW1 (ENSODEG00000009462) MRPL32 (ENSODEG00000008658) ENSODEG00000008580 C7orf25 (ENSODEG00000019542) GLI3 (ENSODEG00000008109) INHBA (ENSODEG00000007905) SUGCT (ENSODEG00000008687) ENSODEG00000008104 ENSODEG00000008309 #37 RALA (ENSODEG00000007864) #36 YAE1 (ENSODEG00000007300) #19 POU6F2 (ENSODEG00000009460) #21 ENSODEG00000007666 #22 ENSODEG00000009633 #22 AMPH (ENSODEG00000010210) #27 ENSODEG00000010348 ENSODEG00000009018 STARD3NL (ENSODEG00000007720) #28 EPDR1 (ENSODEG00000008299) #29 SFRP4 (ENSODEG00000008477) #30 NME8 (ENSODEG00000008055) #31 ELMO1 (ENSODEG00000008951) #34 AOAH (ENSODEG00000009152) ANLN (ENSODEG00000008115) MATCAP2 (ENSODEG00000010906) #35 EEPD1 (ENSODEG00000007785) ENSODEG00000013004 HERPUD2 (ENSODEG00000010736) ENSODEG00000008828 Long-tailed chinchilla MODERN SPECIES 167 STK17A (ENSCLAG00000010347) HECW1 (ENSCLAG00000011773) MRPL32 (ENSCLAG00000016308) PSMA2 (ENSCLAG00000006277) C7orf25 (ENSCLAG00000006458) GLI3 (ENSCLAG00000006524) INHBA (ENSCLAG00000007192) SUGCT (ENSCLAG00000007866) ENSCLAG00000008555 MPLKIP (ENSCLAG00000011526) ENSCLAG00000011577 #37 RALA (ENSCLAG00000006479) #36 YAE1 (ENSCLAG00000006572) #19 ENSCLAG00000006621 #21 ENSCLAG00000006744 #21 VPS41 (ENSCLAG00000007171) #22 AMPH (ENSCLAG00000004190) #27 ENSCLAG00000004875 ENSCLAG00000007481 ENSCLAG00000007605 ENSCLAG00000008044 ENSCLAG00000008127 STARD3NL (ENSCLAG00000005709) #28 ENSCLAG00000006163 EPDR1 (ENSCLAG00000006708) #29 SFRP4 (ENSCLAG00000007024) #30 NME8 (ENSCLAG00000007392) #31 GPR141 (ENSCLAG00000011696) #32 ELMO1 (ENSCLAG00000012359) #34 AOAH (ENSCLAG00000007696) ANLN (ENSCLAG00000005874) Guinea pig MODERN SPECIES 30 ENSCPOG00000037130 STK17A (ENSCPOG00000012689) HECW1 (ENSCPOG00000000176) MRPL32 (ENSCPOG00000034853) PSMA2 (ENSCPOG00000013134) C7orf25 (ENSCPOG00000013131) GLI3 (ENSCPOG00000013233) ENSCPOG00000037187 SUGCT (ENSCPOG00000009948) MPLKIP (ENSCPOG00000037370) ENSCPOG00000009938 #37 RALA (ENSCPOG00000037731) #36 YAE1 (ENSCPOG00000039885) #19 ENSCPOG00000036410 #21 ENSCPOG00000012221 #21 VPS41 (ENSCPOG00000006142) #22 AMPH (ENSCPOG00000006478) #27 ENSCPOG00000024186 STARD3NL (ENSCPOG00000004394) #28 EPDR1 (ENSCPOG00000032481) #29 SFRP4 (ENSCPOG00000010391) #30 NME8 (ENSCPOG00000010378) #31 ENSCPOG00000033172 ##32 GPR141 (ENSCPOG00000033831) #32 ELMO1 (ENSCPOG00000005738) #34 ENSCPOG00000000295 ANLN (ENSCPOG00000008050) MATCAP2 (ENSCPOG00000008038) #35 EEPD1 (ENSCPOG00000001186) SEPTIN7 (ENSCPOG00000012518) HERPUD2 (ENSCPOG00000012514) Naked mole-rat female MODERN SPECIES EGFR (ENSHGLG00000005749) LANCL2 (ENSHGLG00000004769) ENSHGLG00000033405 ENSHGLG00000038563 ENSHGLG00000050582 INHBA (ENSHGLG00000041796) SUGCT (ENSHGLG00000008015) ENSHGLG00000040910 ENSHGLG00000038133 MPLKIP (ENSHGLG00000032456) CDK13 (ENSHGLG00000014999) #37 RALA (ENSHGLG00000038221) #36 YAE1 (ENSHGLG00000010237) #19 ENSHGLG00000044208 POU6F2 (ENSHGLG00000041492) #21 VPS41 (ENSHGLG00000017533) #22 AMPH (ENSHGLG00000008101) #27 ENSHGLG00000049625 ENSHGLG00000048223 ENSHGLG00000043187 ENSHGLG00000036569 ENSHGLG00000035739 ENSHGLG00000032003 ENSHGLG00000044233 ENSHGLG00000007933 ENSHGLG00000048917 STARD3NL (ENSHGLG00000008923) #28 EPDR1 (ENSHGLG00000010611) #29 SFRP4 (ENSHGLG00000032044) #30 NME8 (ENSHGLG00000008249) #31 ENSHGLG00000034521 Sciuridae ANCESTRAL SPECIES 7 ENSGT00390000011072 ENSGT00440000033985 ENSGT00940000154014.a ENSGT00940000158294 ENSGT00390000014996 ENSGT00550000074870.b ENSGT00390000014722 ENSGT00940000155925 ENSGT00940000157116 ENSGT00940000157866 ENSGT00390000002582 ENSGT00940000157852 #37 ENSGT00940000155142 #36 ENSGT00390000011176 #19 ENSGT00940000156175 #21 ENSGT00390000000481 #22 ENSGT00950000182882.A.b.a #27 ENSGT00940000153143.a.b.b.a.b.d.a.c ENSGT01060000248976 ENSGT00940000153143.a.b.b.a.b.d.a.d ENSGT00940000155476 #28 ENSGT00940000161910 #29 ENSGT00940000160766 #30 ENSGT00940000161182 #31 ENSGT01030000234518.E.c.b ##32 ENSGT01030000234518.E.c.a #32 ENSGT00940000155994 #34 ENSGT00390000008427 ENSGT00390000008749.e ENSGT00390000004417.a #35 ENSGT00390000009677 Marmotini ANCESTRAL SPECIES 37 ENSGT00390000011072 ENSGT00960000189879 ENSGT00940000154014.a ENSGT00940000158294 ENSGT00390000014996 ENSGT00550000074870.b ENSGT00390000014722 ENSGT00940000155925 ENSGT00940000157116 ENSGT00940000157866 ENSGT00390000002582 ENSGT00940000157852 #37 ENSGT00940000155142 #36 ENSGT00390000011176 #19 ENSGT00940000156175 #21 ENSGT00390000000481 #22 ENSGT00950000182882.A.b.a #27 ENSGT00940000153143.a.b.b.a.b.d.a.c.a.a ENSGT01060000248976.a ENSGT00940000153143.a.b.b.a.b.d.a.c.a.b ENSGT01060000248976.b ENSGT00940000153143.a.b.b.a.b.d.a.d.a ENSGT00940000155476 #28 ENSGT00940000161910 #29 ENSGT00940000160766 #30 ENSGT00940000161182 #31 ENSGT01030000234518.E.c.b ##32 ENSGT01030000234518.E.c.a #32 ENSGT00940000155994 #34 ENSGT00390000008427 ENSGT00390000008749.e Marmotini_b ANCESTRAL SPECIES 26 ENSGT00390000011072 ENSGT00960000189879 ENSGT00940000154014.a ENSGT00940000158294 ENSGT00390000014996 ENSGT00550000074870.b ENSGT00390000014722 ENSGT00940000155925 ENSGT00940000157116 ENSGT00940000157866 ENSGT00390000002582 ENSGT00940000157852 #37 ENSGT00940000155142 #36 ENSGT00390000011176 #19 ENSGT00940000156175 #21 ENSGT00390000000481 #22 ENSGT00950000182882.A.b.a #27 ENSGT00940000153143.a.b.b.a.b.d.a.c.a.a ENSGT01060000248976.a ENSGT00940000153143.a.b.b.a.b.d.a.c.a.b ENSGT01060000248976.b ENSGT00940000153143.a.b.b.a.b.d.a.d.a ENSGT00940000155476 #28 ENSGT00940000161910 #29 ENSGT00940000160766 #30 ENSGT00940000161182 #31 ENSGT01030000234518.E.c.b ##32 ENSGT01030000234518.E.c.a #32 ENSGT00940000155994 #34 ENSGT00390000008427 ENSGT00390000008749.e Squirrel MODERN SPECIES 78 MRPS24 (ENSSTOG00000032907) BLVRA (ENSSTOG00000021499) STK17A (ENSSTOG00000026139) HECW1 (ENSSTOG00000016043) MRPL32 (ENSSTOG00000013340) PSMA2 (ENSSTOG00000013334) C7orf25 (ENSSTOG00000027844) GLI3 (ENSSTOG00000020844) ENSSTOG00000034121 SUGCT (ENSSTOG00000011998) MPLKIP (ENSSTOG00000026468) CDK13 (ENSSTOG00000022568) #37 RALA (ENSSTOG00000020292) #36 YAE1 (ENSSTOG00000023547) #19 ENSSTOG00000023336 #21 VPS41 (ENSSTOG00000007343) #22 AMPH (ENSSTOG00000012263) #27 ENSSTOG00000022469 STARD3NL (ENSSTOG00000014750) #28 EPDR1 (ENSSTOG00000024033) #29 SFRP4 (ENSSTOG00000012692) #30 NME8 (ENSSTOG00000014565) #31 GPR141 (ENSSTOG00000014563) #32 ELMO1 (ENSSTOG00000005876) #34 AOAH (ENSSTOG00000006686) ANLN (ENSSTOG00000024866) ENSSTOG00000006630 #35 EEPD1 (ENSSTOG00000008483) ENSSTOG00000021378 HERPUD2 (ENSSTOG00000004837) TBX20 (ENSSTOG00000008381) Arctic ground squirrel MODERN SPECIES 51 SUGCT (ENSUPAG00010001771) MPLKIP (ENSUPAG00010001797) CDK13 (ENSUPAG00010001813) #37 RALA (ENSUPAG00010001880) #36 YAE1 (ENSUPAG00010001890) #19 ENSUPAG00010001913 #21 VPS41 (ENSUPAG00010001930) #22 AMPH (ENSUPAG00010001960) #27 ENSUPAG00010002019 ENSUPAG00010002046 ENSUPAG00010002049 ENSUPAG00010002054 ENSUPAG00010002060 ENSUPAG00010002063 STARD3NL (ENSUPAG00010002079) #28 EPDR1 (ENSUPAG00010002156) #29 SFRP4 (ENSUPAG00010002173) #30 NME8 (ENSUPAG00010002191) #31 ENSUPAG00010002224 ##32 GPR141 (ENSUPAG00010002233) #32 ELMO1 (ENSUPAG00010002235) #34 AOAH (ENSUPAG00010002268) Alpin marmot MODERN SPECIES 26 MRPL32 (ENSMMMG00000012145) PSMA2 (ENSMMMG00000012134) C7orf25 (ENSMMMG00000012127) ENSMMMG00000012115 ENSMMMG00000012111 ENSMMMG00000012105 GLI3 (ENSMMMG00000012080) INHBA (ENSMMMG00000012059) SUGCT (ENSMMMG00000012046) MPLKIP (ENSMMMG00000012038) CDK13 (ENSMMMG00000012001) #37 ENSMMMG00000011996 RALA (ENSMMMG00000011989) #36 YAE1 (ENSMMMG00000011978) #19 ENSMMMG00000011962 #21 VPS41 (ENSMMMG00000011922) #22 ENSMMMG00000011913 AMPH (ENSMMMG00000011881) #27 ENSMMMG00000011878 ENSMMMG00000011872 ENSMMMG00000011859 ENSMMMG00000011847 ENSMMMG00000011841 ENSMMMG00000011838 ENSMMMG00000011836 ENSMMMG00000011826 STARD3NL (ENSMMMG00000011818) #28 ENSMMMG00000011813 #29 SFRP4 (ENSMMMG00000011801) #30 NME8 (ENSMMMG00000011768) #31 ENSMMMG00000011757 ##32 Eurasian red squirrel MODERN SPECIES 17 ENSSVLG00005005320 MRPL32 (ENSSVLG00005005303) PSMA2 (ENSSVLG00005005237) C7orf25 (ENSSVLG00005005209) GLI3 (ENSSVLG00005005178) INHBA (ENSSVLG00005005151) ENSSVLG00005005081 ENSSVLG00005005063 SUGCT (ENSSVLG00005004898) MPLKIP (ENSSVLG00005004837) ENSSVLG00005004818 #37 RALA (ENSSVLG00005004779) #36 YAE1 (ENSSVLG00005004760) #19 ENSSVLG00005023507 POU6F2 (ENSSVLG00005023305) #21 VPS41 (ENSSVLG00005023041) #22 AMPH (ENSSVLG00005022710) #27 ENSSVLG00005022644 TRGV9 (ENSSVLG00005022616) ENSSVLG00005022603 ENSSVLG00005022581 ENSSVLG00005022564 STARD3NL (ENSSVLG00005022519) #28 ENSSVLG00005022493 EPDR1 (ENSSVLG00005022455) #29 SFRP4 (ENSSVLG00005022432) #30 NME8 (ENSSVLG00005022326) #31 ENSSVLG00005022300 ##32 GPR141 (ENSSVLG00005022281) #32 ELMO1 (ENSSVLG00005022132) #34 AOAH (ENSSVLG00005021818)