Bilateria ANCESTRAL SPECIES ENSGT00940000155725 #22 Chordata ANCESTRAL SPECIES ENSGT00940000155725 #22 Vertebrata ANCESTRAL SPECIES ENSGT00940000155725 #22 Gnathostomata ANCESTRAL SPECIES 266 ENSGT00940000161371 ENSGT00940000166051 ENSGT00940000163547 ENSGT00940000159693 ENSGT00940000159864 ENSGT01030000234896 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00950000184358 ENSGT00940000161490 ENSGT00390000009361 Euteleostomi ANCESTRAL SPECIES 11 ENSGT00940000158416 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000154317.a.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000164609 ENSGT00940000170463 ENSGT00940000160000 ENSGT00940000159402 ENSGT00940000164855 #28 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 Sarcopterygii ANCESTRAL SPECIES 16 ENSGT00940000166171 ENSGT00940000158416 ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000154317.a.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000164609 ENSGT00940000170463 ENSGT00940000166133 ENSGT00940000164855 #28 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 ENSGT00940000158213 #36 Tetrapoda ANCESTRAL SPECIES 4 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000154317.a.b ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000164609 ENSGT00940000170463 ENSGT00940000164855 #28 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 ENSGT00940000158213 #36 ENSGT00940000160723 #37 Amniota ANCESTRAL SPECIES 1 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000154317.a.b ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000164609 ENSGT00940000170463 ENSGT00940000164855 #28 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 Sauria ANCESTRAL SPECIES 1 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000154317.a.b ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00960000189563 ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119.b #26 ENSGT00940000160119.a ##26 ENSGT00940000155462 #27 ENSGT00940000164609 ENSGT00940000170463 ENSGT00940000164855 #28 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 Lepidosauria ANCESTRAL SPECIES ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00940000157797 ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000163953 #19 ENSGT00940000155676 #18 ENSGT00940000154317.a.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00960000189563 ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119.b #26 ENSGT00940000160119.a ##26 ENSGT00940000155462 #27 ENSGT00940000164855 #28 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 Episquamata ANCESTRAL SPECIES ENSGT01050000244879.b.a.b.b ENSGT00940000158416 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000163953 #19 ENSGT00940000155676 #18 ENSGT00940000154317.a.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00960000189563 ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119.b #26 ENSGT00940000155462 #27 ENSGT00940000164855 #28 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213.a #35 Toxicofera ANCESTRAL SPECIES ENSGT00940000158416 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00940000157797 ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000154317.a.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00960000189563 ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119.b #26 ENSGT00940000155462 #27 ENSGT00940000164855 #28 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213.a #35 ENSGT00940000158213.b #36 Elapidae ANCESTRAL SPECIES ENSGT00530000063353.a.b.a ENSGT01050000244879.b.a.b.b ENSGT00940000158416 ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00940000157797 ENSGT00940000156772.pb.b ##11 ENSGT00390000009168.cc.a ##13 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00960000189563 ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119.b #26 ENSGT00940000155462 #27 ENSGT00940000164855 #28 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213.a #35 ENSGT00940000158213.b #36 Indian cobra MODERN SPECIES ENSNNAG00000005682 #7 ENSNNAG00000005723 #8 ENSNNAG00000005895 #9 ENSNNAG00000005915 #10 ENSNNAG00000005971 #11 ENSNNAG00000005994 #12 RWDD1 (ENSNNAG00000006016) #13 ENSNNAG00000006065 #14 TRAPPC3L (ENSNNAG00000006090) #15 CALHM6 (ENSNNAG00000006117) #16 DSE (ENSNNAG00000006130) #17 NT5DC1 (ENSNNAG00000006145) #18 ENSNNAG00000000244 #19 FRK (ENSNNAG00000000261) #20 HS3ST5 (ENSNNAG00000000269) #21 HDAC2 (ENSNNAG00000000273) #22 MARCKS (ENSNNAG00000000279) #23 LAMA4 (ENSNNAG00000000292) #24 TUBE1 (ENSNNAG00000000365) #25 CCN6 (ENSNNAG00000000390) #26 FYN (ENSNNAG00000000407) #27 ENSNNAG00000000428 #28 REV3L (ENSNNAG00000000449) #29 MFSD4B (ENSNNAG00000000483) #30 SLC16A10 (ENSNNAG00000000497) #31 RPF2 (ENSNNAG00000000509) #32 GTF3C6 (ENSNNAG00000000528) #33 AMD1 (ENSNNAG00000000539) #34 ENSNNAG00000000596 #35 ENSNNAG00000000562 #36 SLC22A16 (ENSNNAG00000000606) #37 Elapidae_a ANCESTRAL SPECIES 6 ENSGT00390000009168.cc.a ##13 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00960000189563 ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119.b.c #26 ENSGT00940000160119.b.d #26 ENSGT00940000155462 #27 ENSGT00940000164855 #28 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213.b #36 Acanthophiinae ANCESTRAL SPECIES 8 ENSGT00390000009168.cc.a ##13 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00960000189563.a ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119.b.c #26 ENSGT00940000160119.b.d #26 ENSGT00940000155462 #27 ENSGT00940000164855 #28 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213.b #36 Mainland tiger snake MODERN SPECIES 16 ENSNSUG00000018582 NT5DC1 (ENSNSUG00000018571) #18 FRK (ENSNSUG00000018569) #20 ENSNSUG00000018566 HS3ST5 (ENSNSUG00000018565) #21 HDAC2 (ENSNSUG00000018549) #22 MARCKS (ENSNSUG00000018548) #23 ENSNSUG00000018547 LAMA4 (ENSNSUG00000018546) #24 TUBE1 (ENSNSUG00000018545) #25 CCN6 (ENSNSUG00000018544) #26 FYN (ENSNSUG00000018543) #27 ENSNSUG00000018542 #28 ENSNSUG00000018541 ENSNSUG00000018539 #29 MFSD4B (ENSNSUG00000018538) #30 SLC16A10 (ENSNSUG00000018537) #31 RPF2 (ENSNSUG00000018536) #32 GTF3C6 (ENSNSUG00000018535) #33 AMD1 (ENSNSUG00000018478) #34 CDK19 (ENSNSUG00000018477) #36 Eastern brown snake MODERN SPECIES 4 RWDD1 (ENSPTXG00000014001) ##13 ENSPTXG00000014002 #15 TRAPPC3L (ENSPTXG00000014003) #15 CALHM6 (ENSPTXG00000014004) #16 DSE (ENSPTXG00000014005) #17 NT5DC1 (ENSPTXG00000014006) #18 ENSPTXG00000014007 #19 FRK (ENSPTXG00000014008) #20 HS3ST5 (ENSPTXG00000014009) #21 HDAC2 (ENSPTXG00000014011) #22 MARCKS (ENSPTXG00000014014) #23 ENSPTXG00000014015 LAMA4 (ENSPTXG00000014017) #24 TUBE1 (ENSPTXG00000014018) #25 ENSPTXG00000014019 #26 ENSPTXG00000014021 #26 FYN (ENSPTXG00000014022) #27 ENSPTXG00000014027 #28 REV3L (ENSPTXG00000014034) #29 MFSD4B (ENSPTXG00000014147) #30 SLC16A10 (ENSPTXG00000014148) #31 ENSPTXG00000014149 RPF2 (ENSPTXG00000014152) #32 GTF3C6 (ENSPTXG00000014155) #33 AMD1 (ENSPTXG00000014158) #34 Blue-lipped sea krait MODERN SPECIES 851 HDAC2 (ENSLLTG00000001961) #22 MARCKS (ENSLLTG00000001976) #23 Lizard MODERN SPECIES ENSACAG00000029503 #11 RWDD1 (ENSACAG00000013868) #13 TRAPPC3L (ENSACAG00000040856) #15 CALHM6 (ENSACAG00000035788) #16 DSE (ENSACAG00000013791) #17 ENSACAG00000012457 #18 COL10A1 (ENSACAG00000012503) FRK (ENSACAG00000012316) #20 ENSACAG00000044190 ENSACAG00000025602 ENSACAG00000025786 ENSACAG00000028800 HS3ST5 (ENSACAG00000012310) #21 ENSACAG00000045149 ENSACAG00000037660 HDAC2 (ENSACAG00000012174) #22 MARCKS (ENSACAG00000012165) #23 ENSACAG00000037386 ENSACAG00000041330 ENSACAG00000039863 PRDM1 (ENSACAG00000005496) ATG5 (ENSACAG00000005534) CRYBG1 (ENSACAG00000005581) RTN4IP1 (ENSACAG00000005683) QRSL1 (ENSACAG00000005718) ENSACAG00000040537 MTRES1 (ENSACAG00000005757) BEND3 (ENSACAG00000005763) ENSACAG00000035942 SOBP (ENSACAG00000005784) ENSACAG00000035715 Laterata ANCESTRAL SPECIES 4 ENSGT00530000063353.a.b.a ENSGT01050000244879.b.a.b.b ENSGT00940000158416 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000163953 #19 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119.b #26 ENSGT00940000155462 #27 ENSGT00940000164855 #28 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213.a #35 ENSGT00940000158213.b #36 Argentine black and white tegu MODERN SPECIES 2 ZUP1 (ENSSMRG00000012520) ENSSMRG00000012521 #11 ENSSMRG00000012522 #11 ENSSMRG00000012524 #11 ENSSMRG00000012525 #11 ENSSMRG00000012552 #11 RWDD1 (ENSSMRG00000012560) #13 TRAPPC3L (ENSSMRG00000012562) #15 CALHM6 (ENSSMRG00000012565) #16 DSE (ENSSMRG00000012596) #17 NT5DC1 (ENSSMRG00000012597) #18 COL10A1 (ENSSMRG00000012598) ENSSMRG00000012599 FRK (ENSSMRG00000012619) #20 HS3ST5 (ENSSMRG00000012651) #21 HDAC2 (ENSSMRG00000012652) #22 MARCKS (ENSSMRG00000012654) #23 ENSSMRG00000012697 LAMA4 (ENSSMRG00000012719) #24 TUBE1 (ENSSMRG00000012720) #25 CCN6 (ENSSMRG00000012721) #26 FYN (ENSSMRG00000012730) #27 ENSSMRG00000012733 #28 REV3L (ENSSMRG00000012740) #29 MFSD4B (ENSSMRG00000012977) #30 SLC16A10 (ENSSMRG00000012978) #31 RPF2 (ENSSMRG00000012979) #32 ENSSMRG00000012981 GTF3C6 (ENSSMRG00000012983) #33 AMD1 (ENSSMRG00000012984) #34 CDK19 (ENSSMRG00000012985) #36 Common wall lizard MODERN SPECIES 11 GPRC6A (ENSPMRG00000006219) ENSPMRG00000006208 ENSPMRG00000006182 ENSPMRG00000006165 #11 ENSPMRG00000006159 #11 ENSPMRG00000006121 #11 RWDD1 (ENSPMRG00000006088) #13 TRAPPC3L (ENSPMRG00000006082) #15 CALHM6 (ENSPMRG00000006078) #16 DSE (ENSPMRG00000006073) #17 ENSPMRG00000006068 #19 NT5DC1 (ENSPMRG00000006051) #18 FRK (ENSPMRG00000006034) #20 ENSPMRG00000006026 HS3ST5 (ENSPMRG00000006020) #21 HDAC2 (ENSPMRG00000005993) #22 ENSPMRG00000005981 MARCKS (ENSPMRG00000005971) #23 ENSPMRG00000005961 LAMA4 (ENSPMRG00000003793) #24 TUBE1 (ENSPMRG00000003497) #25 ENSPMRG00000003491 #26 ENSPMRG00000003488 #26 FYN (ENSPMRG00000003480) #27 ENSPMRG00000003467 #28 REV3L (ENSPMRG00000003446) #29 MFSD4B (ENSPMRG00000003439) #30 SLC16A10 (ENSPMRG00000003435) #31 ENSPMRG00000003431 RPF2 (ENSPMRG00000003425) #32 GTF3C6 (ENSPMRG00000003419) #33 tuatara MODERN SPECIES 485 HS3ST5 (ENSSPUG00000000295) #21 HDAC2 (ENSSPUG00000000209) #22 ENSSPUG00000000200 MARCKS (ENSSPUG00000000173) #23 Archelosauria ANCESTRAL SPECIES 1 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00940000157797 ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00960000189563 ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119.b #26 ENSGT00940000160119.a ##26 ENSGT00940000155462 #27 ENSGT00940000164855 #28 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 Archosauria ANCESTRAL SPECIES 3 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00940000157797 ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00960000189563 ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119.b #26 ENSGT00940000160119.a ##26 ENSGT00940000155462 #27 ENSGT00940000164855 #28 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 Aves ANCESTRAL SPECIES 10 ENSGT00940000158416 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00960000189563 ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119.b #26 ENSGT00940000160119.a ##26 ENSGT00940000155462 #27 ENSGT00940000164855 #28 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 Neognathae ANCESTRAL SPECIES 2 ENSGT00940000158416 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00960000189563 ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119.b #26 ENSGT00940000160119.a ##26 ENSGT00940000155462 #27 ENSGT00940000164855 #28 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 Galloanserae ANCESTRAL SPECIES 2 ENSGT00940000158416 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00960000189563 ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119.b #26 ENSGT00940000160119.a ##26 ENSGT00940000155462 #27 ENSGT00940000164855 #28 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 Anatidae ANCESTRAL SPECIES ENSGT00940000158416 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00960000189563 ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119.b #26 ENSGT00940000155462 #27 ENSGT00940000164855 #28 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 ENSGT00940000160723 #37 Pink-footed goose MODERN SPECIES 43 RWDD1 (ENSABRG00000000238) #13 CALHM4 (ENSABRG00000000249) ##16 TRAPPC3L (ENSABRG00000000277) #15 CALHM5 (ENSABRG00000000291) ##16 CALHM6 (ENSABRG00000000306) #16 DSE (ENSABRG00000000313) #17 NT5DC1 (ENSABRG00000000333) #18 ENSABRG00000000444 #19 FRK (ENSABRG00000000463) #20 HS3ST5 (ENSABRG00000000532) #21 HDAC2 (ENSABRG00000000551) #22 MARCKS (ENSABRG00000000577) #23 LAMA4 (ENSABRG00000000629) #24 TUBE1 (ENSABRG00000000661) #25 CCN6 (ENSABRG00000000698) #26 FYN (ENSABRG00000000747) #27 ENSABRG00000000776 #28 REV3L (ENSABRG00000000848) #29 MFSD4B (ENSABRG00000000920) #30 SLC16A10 (ENSABRG00000000975) #31 RPF2 (ENSABRG00000000989) #32 GTF3C6 (ENSABRG00000001009) #33 AMD1 (ENSABRG00000001085) #34 CDK19 (ENSABRG00000001130) #36 SLC22A16 (ENSABRG00000001457) #37 DDO (ENSABRG00000001464) Duck MODERN SPECIES 21 ENSAPLG00000003079 FAM162B (ENSAPLG00000025053) KPNA5 (ENSAPLG00000003395) ZUP1 (ENSAPLG00000004367) ENSAPLG00000004407 #11 RWDD1 (ENSAPLG00000010404) #13 CALHM4 (ENSAPLG00000010403) ##16 TRAPPC3L (ENSAPLG00000010373) #15 ENSAPLG00000030127 #17 CALHM6 (ENSAPLG00000010323) #16 ENSAPLG00000010250 #17 NT5DC1 (ENSAPLG00000010010) #18 ENSAPLG00000010244 #19 FRK (ENSAPLG00000009906) #20 HS3ST5 (ENSAPLG00000006908) #21 HDAC2 (ENSAPLG00000006926) #22 MARCKS (ENSAPLG00000030242) #23 ENSAPLG00000021734 LAMA4 (ENSAPLG00000013937) #24 TUBE1 (ENSAPLG00000014557) #25 CCN6 (ENSAPLG00000014838) #26 FYN (ENSAPLG00000014917) #27 ENSAPLG00000015277 #28 ENSAPLG00000025315 ENSAPLG00000018317 ENSAPLG00000028742 #29 ENSAPLG00000030380 #30 SLC16A10 (ENSAPLG00000008970) #31 RPF2 (ENSAPLG00000008812) #32 GTF3C6 (ENSAPLG00000008705) #33 AMD1 (ENSAPLG00000014874) #34 Phasianidae ANCESTRAL SPECIES 3 ENSGT00940000158416 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00940000155723.g #25 ENSGT00940000160119.b #26 ENSGT00940000160119.a ##26 ENSGT00940000155462 #27 ENSGT00940000164855 #28 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966.a #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 ENSGT00940000160723 #37 Japanese quail MODERN SPECIES 21 KPNA5 (ENSCJPG00005009205) FAM162B (ENSCJPG00005009206) ZUP1 (ENSCJPG00005009207) ENSCJPG00005009208 #11 ENSCJPG00005009209 #11 RWDD1 (ENSCJPG00005009210) #13 CALHM4 (ENSCJPG00005009211) ##16 TRAPPC3L (ENSCJPG00005009212) #15 CALHM5 (ENSCJPG00005009213) ##16 CALHM6 (ENSCJPG00005009214) #16 DSE (ENSCJPG00005009215) #17 NT5DC1 (ENSCJPG00005009216) #18 ENSCJPG00005009217 #19 FRK (ENSCJPG00005009218) #20 HS3ST5 (ENSCJPG00005009222) #21 HDAC2 (ENSCJPG00005009223) #22 ENSCJPG00005009224 MARCKS (ENSCJPG00005009226) #23 LAMA4 (ENSCJPG00005009233) #24 TUBE1 (ENSCJPG00005009234) #25 CCN6 (ENSCJPG00005009235) #26 FYN (ENSCJPG00005009237) #27 ENSCJPG00005009238 #28 REV3L (ENSCJPG00005009239) #29 MFSD4B (ENSCJPG00005009240) #30 SLC16A10 (ENSCJPG00005009241) #31 RPF2 (ENSCJPG00005009242) #32 GTF3C6 (ENSCJPG00005009243) #33 AMD1 (ENSCJPG00005009244) #34 CDK19 (ENSCJPG00005009245) #36 SLC22A16 (ENSCJPG00005009394) #37 Phasianidae_b ANCESTRAL SPECIES 2 ENSGT00940000158416 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00940000155723.g #25 ENSGT00940000160119.b #26 ENSGT00940000160119.a ##26 ENSGT00940000155462 #27 ENSGT00940000164855 #28 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966.a #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 ENSGT00940000160723 #37 Turkey MODERN SPECIES 11 ENSMGAG00000013432 #33 SLC16A10 (ENSMGAG00000013427) #31 ENSMGAG00000021512 #31 ENSMGAG00000022666 #29 ENSMGAG00000013426 #30 ENSMGAG00000013423 #29 ENSMGAG00000013418 #28 FYN (ENSMGAG00000013415) #27 ENSMGAG00000022768 #25 ENSMGAG00000013414 #26 ENSMGAG00000013411 #25 ENSMGAG00000017970 LAMA4 (ENSMGAG00000013404) #24 ENSMGAG00000022379 ENSMGAG00000021302 ENSMGAG00000013396 #22 ENSMGAG00000013395 #21 ENSMGAG00000021850 ENSMGAG00000013388 #20 ENSMGAG00000022386 #18 ENSMGAG00000013387 #19 ENSMGAG00000013382 #18 ENSMGAG00000013385 #17 ENSMGAG00000013380 ##16 ENSMGAG00000013381 #15 CALHM5 (ENSMGAG00000019395) ##16 ENSMGAG00000013384 #16 ENSMGAG00000018692 #11 ENSMGAG00000013379 #13 AFG1L (ENSMGAG00000013490) SNX3 (ENSMGAG00000013494) Chicken MODERN SPECIES 22 FAM162B (ENSGALG00010014653) KPNA5 (ENSGALG00010014707) ZUP1 (ENSGALG00010014734) ENSGALG00010014764 #11 RWDD1 (ENSGALG00010014812) #13 TRAPPC3L (ENSGALG00010014830) #15 FAM26D (ENSGALG00010014851) ##16 FAM26E (ENSGALG00010014866) ##16 FAM26F (ENSGALG00010014873) #16 DSE (ENSGALG00010012650) #17 NT5DC1 (ENSGALG00010012690) #18 COL10A1 (ENSGALG00010012719) #19 FRK (ENSGALG00010014602) #20 ENSGALG00010013350 HS3ST5 (ENSGALG00010013363) #21 HDAC2 (ENSGALG00010013392) #22 MARCKS (ENSGALG00010013402) #23 ENSGALG00010013411 LAMA4 (ENSGALG00010013458) #24 TUBE1 (ENSGALG00010013508) #25 ENSGALG00010015164 #26 CCN6 (ENSGALG00010013521) ##26 FYN (ENSGALG00010013604) #27 TRAF3IP2 (ENSGALG00010013651) #28 REV3L (ENSGALG00010013664) #29 MFSD4B (ENSGALG00010013679) #30 SLC16A10 (ENSGALG00010013720) #31 RPF2 (ENSGALG00010013760) #32 GTF3C6 (ENSGALG00010013794) #33 AMD1 (ENSGALG00010013814) #34 CDK19 (ENSGALG00010013842) #36 Neognathae_b ANCESTRAL SPECIES 1 ENSGT00940000158416 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119.b #26 ENSGT00940000160119.a ##26 ENSGT00940000155462 #27 ENSGT00940000164855 #28 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 ENSGT00940000160723 #37 Neognathae_c ANCESTRAL SPECIES 5 ENSGT00940000158416 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119.b #26 ENSGT00940000160119.a ##26 Golden eagle MODERN SPECIES 11 GPRC6A (ENSACCG00020006680) FAM162B (ENSACCG00020006669) KPNA5 (ENSACCG00020006648) ZUP1 (ENSACCG00020006610) ENSACCG00020006579 #11 RWDD1 (ENSACCG00020006571) #13 CALHM4 (ENSACCG00020006561) ##16 CALHM5 (ENSACCG00020006553) ##16 TRAPPC3L (ENSACCG00020006542) #15 ENSACCG00020006525 #16 DSE (ENSACCG00020006515) #17 ENSACCG00020006507 #19 NT5DC1 (ENSACCG00020006495) #18 FRK (ENSACCG00020006485) #20 HS3ST5 (ENSACCG00020006476) #21 HDAC2 (ENSACCG00020006464) #22 MARCKS (ENSACCG00020006456) #23 LAMA4 (ENSACCG00020006424) #24 ENSACCG00020006409 #25 ENSACCG00020006403 #25 ENSACCG00020006395 #26 CCN6 (ENSACCG00020006390) ##26 FYN (ENSACCG00020006370) #27 ENSACCG00020006358 #28 REV3L (ENSACCG00020006335) #29 MFSD4B (ENSACCG00020006317) #30 SLC16A10 (ENSACCG00020006299) #31 RPF2 (ENSACCG00020006288) #32 GTF3C6 (ENSACCG00020006279) #33 AMD1 (ENSACCG00020006266) #34 CDK19 (ENSACCG00020006253) #36 Kakapo MODERN SPECIES 23 RFX6 (ENSSHBG00005003482) GPRC6A (ENSSHBG00005003502) FAM162B (ENSSHBG00005003515) KPNA5 (ENSSHBG00005003578) ZUP1 (ENSSHBG00005003702) RWDD1 (ENSSHBG00005003718) #13 CALHM4 (ENSSHBG00005003749) ##16 TRAPPC3L (ENSSHBG00005003784) #15 CALHM5 (ENSSHBG00005003799) ##16 CALHM6 (ENSSHBG00005003805) #16 DSE (ENSSHBG00005003820) #17 NT5DC1 (ENSSHBG00005003851) #18 ENSSHBG00005003874 #19 FRK (ENSSHBG00005003903) #20 HS3ST5 (ENSSHBG00005003938) #21 HDAC2 (ENSSHBG00005003956) #22 MARCKS (ENSSHBG00005003980) #23 LAMA4 (ENSSHBG00005004609) #24 TUBE1 (ENSSHBG00005017269) #25 ENSSHBG00005017274 #26 CCN6 (ENSSHBG00005017277) ##26 FYN (ENSSHBG00005017280) #27 ENSSHBG00005017283 #28 ENSSHBG00005017288 #29 ENSSHBG00005017294 #29 MFSD4B (ENSSHBG00005017299) #30 SLC16A10 (ENSSHBG00005017320) #31 RPF2 (ENSSHBG00005017324) #32 GTF3C6 (ENSSHBG00005017326) #33 AMD1 (ENSSHBG00005017331) #34 CDK19 (ENSSHBG00005017335) #36 Passeriformes ANCESTRAL SPECIES 2 ENSGT01050000244879.b.a.b.b ENSGT00940000158416 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119.b #26 ENSGT00940000160119.a ##26 ENSGT00940000155462 #27 ENSGT00940000164855 #28 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 ENSGT00940000160723 #37 Great tit MODERN SPECIES 22 RFX6 (ENSPMJG00000014077) GPRC6A (ENSPMJG00000014090) FAM162B (ENSPMJG00000014092) KPNA5 (ENSPMJG00000014094) ZUP1 (ENSPMJG00000014097) RWDD1 (ENSPMJG00000014098) #13 CALHM4 (ENSPMJG00000014100) ##16 CALHM5 (ENSPMJG00000014102) ##16 TRAPPC3L (ENSPMJG00000014105) #15 CALHM6 (ENSPMJG00000014108) #16 DSE (ENSPMJG00000014142) #17 NT5DC1 (ENSPMJG00000014143) #18 ENSPMJG00000014145 #19 FRK (ENSPMJG00000014147) #20 HS3ST5 (ENSPMJG00000014171) #21 HDAC2 (ENSPMJG00000014173) #22 MARCKS (ENSPMJG00000014178) #23 LAMA4 (ENSPMJG00000014201) #24 TUBE1 (ENSPMJG00000015280) #25 CCN6 (ENSPMJG00000015281) #26 FYN (ENSPMJG00000015284) #27 ENSPMJG00000015285 #28 REV3L (ENSPMJG00000015286) #29 MFSD4B (ENSPMJG00000015287) #30 SLC16A10 (ENSPMJG00000015288) #31 RPF2 (ENSPMJG00000015289) #32 GTF3C6 (ENSPMJG00000015290) #33 AMD1 (ENSPMJG00000015291) #34 ENSPMJG00000015294 SLC22A16 (ENSPMJG00000015297) #37 DDO (ENSPMJG00000015298) Passeriformes_d ANCESTRAL SPECIES 2 ENSGT01050000244879.b.a.b.b ENSGT00940000158416 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000163953 #19 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119.b #26 ENSGT00940000160119.a ##26 ENSGT00940000155462 #27 ENSGT00940000164855 #28 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 ENSGT00940000160723 #37 Flycatcher MODERN SPECIES 21 KPNA5 (ENSFALG00000011039) ZUP1 (ENSFALG00000011032) RWDD1 (ENSFALG00000024864) #13 ENSFALG00000028887 CALHM4 (ENSFALG00000011017) ##16 CALHM5 (ENSFALG00000023025) ##16 TRAPPC3L (ENSFALG00000011010) #15 ENSFALG00000011005 #16 ENSFALG00000010999 #16 DSE (ENSFALG00000011001) #17 ENSFALG00000023706 #18 ENSFALG00000010995 #19 ENSFALG00000028957 #18 FRK (ENSFALG00000010983) #20 HS3ST5 (ENSFALG00000010977) #21 HDAC2 (ENSFALG00000010975) #22 LAMA4 (ENSFALG00000010965) #24 TUBE1 (ENSFALG00000010959) #25 CCN6 (ENSFALG00000028771) #26 FYN (ENSFALG00000010875) #27 ENSFALG00000010853 #28 REV3L (ENSFALG00000010846) #29 MFSD4B (ENSFALG00000010844) #30 SLC16A10 (ENSFALG00000010838) #31 RPF2 (ENSFALG00000010816) #32 GTF3C6 (ENSFALG00000028426) #33 AMD1 (ENSFALG00000010794) #34 ENSFALG00000027740 CDK19 (ENSFALG00000010776) #36 SLC22A16 (ENSFALG00000010770) #37 DDO (ENSFALG00000026666) Passeriformes_g ANCESTRAL SPECIES 1 ENSGT01050000244879.b.a.b.b ENSGT00940000158416 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000163953 #19 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119.b #26 ENSGT00940000160119.a ##26 ENSGT00940000155462 #27 ENSGT00940000164855 #28 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 ENSGT00940000160723 #37 Passeroidea ANCESTRAL SPECIES ENSGT01050000244879.b.a.b.b ENSGT00940000158416 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119.b #26 ENSGT00940000160119.a ##26 ENSGT00940000155462 #27 ENSGT00940000164855 #28 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 ENSGT00940000160723 #37 Zebra finch MODERN SPECIES 23 RFX6 (ENSTGUG00000011924) GPRC6A (ENSTGUG00000011925) FAM162B (ENSTGUG00000024738) KPNA5 (ENSTGUG00000011928) ZUP1 (ENSTGUG00000011930) RWDD1 (ENSTGUG00000011932) #13 CALHM5 (ENSTGUG00000011940) ##16 TRAPPC3L (ENSTGUG00000011937) #15 CALHM6 (ENSTGUG00000011941) #16 DSE (ENSTGUG00000011943) #17 ENSTGUG00000011952 #19 NT5DC1 (ENSTGUG00000011946) #18 FRK (ENSTGUG00000011957) #20 ENSTGUG00000028765 HS3ST5 (ENSTGUG00000011963) #21 HDAC2 (ENSTGUG00000011964) #22 MARCKS (ENSTGUG00000026006) #23 LAMA4 (ENSTGUG00000011973) #24 TUBE1 (ENSTGUG00000011993) #25 ENSTGUG00000011997 #26 CCN6 (ENSTGUG00000024640) ##26 FYN (ENSTGUG00000011998) #27 ENSTGUG00000012013 #28 ENSTGUG00000019391 REV3L (ENSTGUG00000012020) #29 MFSD4B (ENSTGUG00000012028) #30 SLC16A10 (ENSTGUG00000012031) #31 RPF2 (ENSTGUG00000012034) #32 GTF3C6 (ENSTGUG00000012040) #33 AMD1 (ENSTGUG00000012045) #34 CDK19 (ENSTGUG00000012053) #36 Common canary MODERN SPECIES 1 RFX6 (ENSSCAG00000014718) GPRC6A (ENSSCAG00000014730) FAM162B (ENSSCAG00000014732) KPNA5 (ENSSCAG00000014738) ZUP1 (ENSSCAG00000014748) RWDD1 (ENSSCAG00000014762) #13 CALHM4 (ENSSCAG00000014792) ##16 TRAPPC3L (ENSSCAG00000014820) #15 CALHM5 (ENSSCAG00000014827) ##16 CALHM6 (ENSSCAG00000014832) #16 DSE (ENSSCAG00000014836) #17 NT5DC1 (ENSSCAG00000014841) #18 ENSSCAG00000014847 #19 FRK (ENSSCAG00000014876) #20 HS3ST5 (ENSSCAG00000014948) #21 HDAC2 (ENSSCAG00000014953) #22 LAMA4 (ENSSCAG00000014967) #24 TUBE1 (ENSSCAG00000014989) #25 CCN6 (ENSSCAG00000014994) #26 FYN (ENSSCAG00000000004) #27 ENSSCAG00000000009 #28 REV3L (ENSSCAG00000000019) #29 MFSD4B (ENSSCAG00000000025) #30 SLC16A10 (ENSSCAG00000000026) #31 RPF2 (ENSSCAG00000000033) #32 GTF3C6 (ENSSCAG00000000034) #33 AMD1 (ENSSCAG00000000040) #34 CDK19 (ENSSCAG00000000050) #36 SLC22A16 (ENSSCAG00000000060) #37 DDO (ENSSCAG00000000067) METTL24 (ENSSCAG00000000070) Medium ground finch MODERN SPECIES 9 GPRC6A (ENSGFOG00000007765) FAM162B (ENSGFOG00000007757) KPNA5 (ENSGFOG00000007745) ZUP1 (ENSGFOG00000007669) RWDD1 (ENSGFOG00000007640) #13 CALHM4 (ENSGFOG00000007609) ##16 CALHM5 (ENSGFOG00000007606) ##16 TRAPPC3L (ENSGFOG00000007597) #15 CALHM6 (ENSGFOG00000007593) #16 DSE (ENSGFOG00000007589) #17 ENSGFOG00000007583 ENSGFOG00000007579 #19 NT5DC1 (ENSGFOG00000007552) #18 FRK (ENSGFOG00000007538) #20 HS3ST5 (ENSGFOG00000007531) #21 HDAC2 (ENSGFOG00000007522) #22 ENSGFOG00000007518 LAMA4 (ENSGFOG00000003411) #24 TUBE1 (ENSGFOG00000003060) #25 CCN6 (ENSGFOG00000003008) #26 FYN (ENSGFOG00000002985) #27 ENSGFOG00000002969 ENSGFOG00000002949 #28 REV3L (ENSGFOG00000002896) #29 MFSD4B (ENSGFOG00000002885) #30 SLC16A10 (ENSGFOG00000002869) #31 RPF2 (ENSGFOG00000002811) #32 GTF3C6 (ENSGFOG00000002784) #33 AMD1 (ENSGFOG00000002740) #34 CDK19 (ENSGFOG00000002694) #36 SLC22A16 (ENSGFOG00000002665) #37 African ostrich MODERN SPECIES 837 GPRC6A (ENSSCUG00000017385) ENSSCUG00000017386 KPNA5 (ENSSCUG00000017388) ZUP1 (ENSSCUG00000017391) ENSSCUG00000017396 #11 RWDD1 (ENSSCUG00000017398) #13 CALHM4 (ENSSCUG00000017400) ##16 TRAPPC3L (ENSSCUG00000017401) #15 CALHM5 (ENSSCUG00000017402) ##16 CALHM6 (ENSSCUG00000017403) #16 DSE (ENSSCUG00000017404) #17 NT5DC1 (ENSSCUG00000017405) #18 ENSSCUG00000017407 #19 FRK (ENSSCUG00000017408) #20 HS3ST5 (ENSSCUG00000017412) #21 HDAC2 (ENSSCUG00000017413) #22 Australian saltwater crocodile MODERN SPECIES 38 KPNA5 (ENSCPRG00005003739) ZUP1 (ENSCPRG00005003679) DHRS1 (ENSCPRG00005003677) ENSCPRG00005003489 #11 RWDD1 (ENSCPRG00005003459) #13 CALHM4 (ENSCPRG00005003448) ##16 ENSCPRG00005003445 #15 CALHM5 (ENSCPRG00005003444) ##16 TRAPPC3L (ENSCPRG00005003437) #15 CALHM6 (ENSCPRG00005003433) #16 DSE (ENSCPRG00005003429) #17 ENSCPRG00005003419 #19 NT5DC1 (ENSCPRG00005003414) #18 FRK (ENSCPRG00005003403) #20 HS3ST5 (ENSCPRG00005003370) #21 HDAC2 (ENSCPRG00005003350) #22 LAMA4 (ENSCPRG00005002233) #24 TUBE1 (ENSCPRG00005002040) #25 ENSCPRG00005002036 #26 CCN6 (ENSCPRG00005002029) ##26 FYN (ENSCPRG00005002011) #27 ENSCPRG00005001997 #28 REV3L (ENSCPRG00005001980) #29 MFSD4B (ENSCPRG00005001968) #30 SLC16A10 (ENSCPRG00005001963) #31 RPF2 (ENSCPRG00005001956) #32 GTF3C6 (ENSCPRG00005001933) #33 AMD1 (ENSCPRG00005001925) #34 CDK19 (ENSCPRG00005001907) #36 SLC22A16 (ENSCPRG00005001884) #37 DDO (ENSCPRG00005001877) Cryptodira ANCESTRAL SPECIES 1 ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00940000157797 ENSGT00940000156772.fb #11 ENSGT00940000156772.gb #11 ENSGT00390000009168 #13 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b.m ##16 ENSGT01030000234610.a.b.n ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000163953 #19 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119.b #26 ENSGT00940000163282.j ENSGT00940000163923.e ENSGT00940000163923.f ENSGT00940000160119.a ##26 ENSGT00940000155462 #27 ENSGT00940000164855 #28 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 Testudinoidea ANCESTRAL SPECIES 32 ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00940000157797 ENSGT00940000156772.fb.a #11 ENSGT00940000156772.gb #11 ENSGT00390000009168 #13 ENSGT01030000234610.a.b.m ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b.n ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119.b #26 ENSGT00940000160119.a ##26 Emydidae ANCESTRAL SPECIES 46 ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00940000157797 ENSGT00940000156772.fb.a #11 ENSGT00940000156772.fb.b.a #11 ENSGT00940000156772.gb #11 ENSGT00390000009168 #13 ENSGT01030000234610.a.b.m ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b.n ##16 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119.b #26 ENSGT00940000160119.a ##26 Three-toed box turtle MODERN SPECIES 15 ENSTMTG00000022191 #11 ENSTMTG00000022196 #11 RWDD1 (ENSTMTG00000022203) #13 ENSTMTG00000022205 #15 ENSTMTG00000022211 ##16 TRAPPC3L (ENSTMTG00000022216) #15 ENSTMTG00000022220 ##16 DSE (ENSTMTG00000022224) #17 NT5DC1 (ENSTMTG00000022236) #18 ENSTMTG00000022259 #19 FRK (ENSTMTG00000022263) #20 HS3ST5 (ENSTMTG00000022267) #21 HDAC2 (ENSTMTG00000022269) #22 MARCKS (ENSTMTG00000022273) #23 LAMA4 (ENSTMTG00000022279) #24 TUBE1 (ENSTMTG00000022289) #25 ENSTMTG00000022292 #26 CCN6 (ENSTMTG00000022295) ##26 FYN (ENSTMTG00000022299) #27 ENSTMTG00000022304 #28 REV3L (ENSTMTG00000022346) #29 MFSD4B (ENSTMTG00000022442) #30 SLC16A10 (ENSTMTG00000022446) #31 RPF2 (ENSTMTG00000000070) #32 GTF3C6 (ENSTMTG00000000100) #33 AMD1 (ENSTMTG00000000123) #34 CDK19 (ENSTMTG00000000276) #36 SLC22A16 (ENSTMTG00000000408) #37 painted turtle MODERN SPECIES 2422 HDAC2 (ENSCPBG00000015893) #22 ENSCPBG00000015891 MARCKS (ENSCPBG00000015888) #23 ENSCPBG00000015885 LAMA4 (ENSCPBG00000013488) #24 TUBE1 (ENSCPBG00000013363) #25 ENSCPBG00000013356 #26 CCN6 (ENSCPBG00000013350) ##26 FYN (ENSCPBG00000006936) #27 ENSCPBG00000006548 #28 REV3L (ENSCPBG00000006535) #29 MFSD4B (ENSCPBG00000006525) #30 SLC16A10 (ENSCPBG00000006518) #31 RPF2 (ENSCPBG00000006504) #32 GTF3C6 (ENSCPBG00000006501) #33 AMD1 (ENSCPBG00000006492) #34 Testudinidae ANCESTRAL SPECIES 10 ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00940000157797 ENSGT00940000156772.fb.a #11 ENSGT00940000156772.gb #11 ENSGT00390000009168 #13 ENSGT01030000234610.a.b.m ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b.n ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000163953 #19 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119.b #26 ENSGT00940000160119.a ##26 ENSGT00940000155462 #27 ENSGT00940000164609 ENSGT00940000164855 #28 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 Goode s thornscrub tortoise MODERN SPECIES 17 DHRS1 (ENSGEVG00005016217) ENSGEVG00005016048 #11 ENSGEVG00005015987 #11 RWDD1 (ENSGEVG00005015958) #13 ENSGEVG00005015917 #15 ENSGEVG00005015884 ##16 TRAPPC3L (ENSGEVG00005015848) #15 ENSGEVG00005015824 ##16 ENSGEVG00005015807 #16 ENSGEVG00005015788 #16 DSE (ENSGEVG00005015769) #17 ENSGEVG00005015741 #19 NT5DC1 (ENSGEVG00005014775) #18 FRK (ENSGEVG00005014318) #20 HS3ST5 (ENSGEVG00005014212) #21 HDAC2 (ENSGEVG00005014147) #22 MARCKS (ENSGEVG00005014084) #23 LAMA4 (ENSGEVG00005013254) #24 TUBE1 (ENSGEVG00005013110) #25 ENSGEVG00005013062 #26 CCN6 (ENSGEVG00005012988) ##26 FYN (ENSGEVG00005012917) #27 ENSGEVG00005012800 #28 REV3L (ENSGEVG00005012666) #29 MFSD4B (ENSGEVG00005012609) #30 SLC16A10 (ENSGEVG00005012583) #31 RPF2 (ENSGEVG00005012092) #32 GTF3C6 (ENSGEVG00005011987) #33 AMD1 (ENSGEVG00005011953) #34 CDK19 (ENSGEVG00005011835) #36 SLC22A16 (ENSGEVG00005011700) #37 Abingdon island giant tortoise MODERN SPECIES 58 HDAC2 (ENSCABG00000008705) #22 MARCKS (ENSCABG00000008704) #23 ENSCABG00000008703 Chinese turtle MODERN SPECIES 1101 ENSPSIG00000005761 #11 ENSPSIG00000005520 #11 ENSPSIG00000005405 #11 RWDD1 (ENSPSIG00000005283) #13 CALHM5 (ENSPSIG00000005270) ##16 TRAPPC3L (ENSPSIG00000005260) #15 ENSPSIG00000005155 #16 ENSPSIG00000004992 #16 DSE (ENSPSIG00000004879) #17 ENSPSIG00000004859 #19 NT5DC1 (ENSPSIG00000004784) #18 FRK (ENSPSIG00000004668) #20 HS3ST5 (ENSPSIG00000004541) #21 HDAC2 (ENSPSIG00000004413) #22 MARCKS (ENSPSIG00000004404) #23 ENSPSIG00000001214 LAMA4 (ENSPSIG00000004066) #24 TUBE1 (ENSPSIG00000004054) #25 CCN6 (ENSPSIG00000004042) ##26 FYN (ENSPSIG00000003826) #27 ENSPSIG00000003815 #28 REV3L (ENSPSIG00000003779) #29 MFSD4B (ENSPSIG00000003739) #30 SLC16A10 (ENSPSIG00000015031) #31 RPF2 (ENSPSIG00000014887) #32 GTF3C6 (ENSPSIG00000014339) #33 AMD1 (ENSPSIG00000013868) #34 CDK19 (ENSPSIG00000013226) #36 ENSPSIG00000013210 Mammalia ANCESTRAL SPECIES 2 ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00390000003880.b.b #15 ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000163953 #19 ENSGT00940000155676 #18 ENSGT00940000154317.a.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000164609 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 ENSGT00940000160723 #37 Platypus MODERN SPECIES 11 KPNA5 (ENSOANG00000038435) ZUP1 (ENSOANG00000013491) RSPH4A (ENSOANG00000012472) ENSOANG00000012469 #11 ENSOANG00000020699 RWDD1 (ENSOANG00000045892) #13 ENSOANG00000038481 #16 TRAPPC3L (ENSOANG00000006297) #15 CALHM5 (ENSOANG00000006298) ##16 ENSOANG00000045905 ##16 DSE (ENSOANG00000050170) #17 NT5DC1 (ENSOANG00000040723) #18 COL10A1 (ENSOANG00000044747) FRK (ENSOANG00000029704) #20 HS3ST5 (ENSOANG00000010980) #21 HDAC2 (ENSOANG00000003631) #22 MALL (ENSOANG00000013121) SLC5A7 (ENSOANG00000050883) ST6GAL2 (ENSOANG00000011147) ENSOANG00000051170 UXS1 (ENSOANG00000029305) ECRG4 (ENSOANG00000044766) NCK2 (ENSOANG00000014187) FHL2 (ENSOANG00000014839) C2orf49 (ENSOANG00000014840) TGFBRAP1 (ENSOANG00000010577) GPR45 (ENSOANG00000047747) MRPS9 (ENSOANG00000012373) ENSOANG00000039031 ENSOANG00000047201 TMEM182 (ENSOANG00000012245) Theria ANCESTRAL SPECIES 4 ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000154317.a.b ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000164609 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 Marsupialia ANCESTRAL SPECIES 2 ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00390000009168 #13 ENSGT00940000160861.a ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a.n #16 ENSGT01030000234610.a.a.m #16 ENSGT00390000006522.b #17 ENSGT00940000163953 #19 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 ENSGT00940000160723 #37 Opossum MODERN SPECIES 1 CALHM5 (ENSMODG00000017840) ##16 TRAPPC3L (ENSMODG00000023338) #15 ENSMODG00000017841 #16 ENSMODG00000017842 #16 DSE (ENSMODG00000017846) #17 ENSMODG00000017850 #19 ENSMODG00000050348 NT5DC1 (ENSMODG00000017849) #18 FRK (ENSMODG00000017852) #20 ENSMODG00000038439 ENSMODG00000028476 ENSMODG00000042919 ENSMODG00000016446 HS3ST5 (ENSMODG00000036869) #21 ENSMODG00000037190 HDAC2 (ENSMODG00000017860) #22 MARCKS (ENSMODG00000045740) #23 LAMA4 (ENSMODG00000017881) #24 FAM229B (ENSMODG00000017886) TUBE1 (ENSMODG00000017887) #25 ENSMODG00000017891 #26 FYN (ENSMODG00000017905) #27 TRAF3IP2 (ENSMODG00000017907) REV3L (ENSMODG00000017910) #29 ENSMODG00000023350 #30 SLC16A10 (ENSMODG00000017914) #31 RPF2 (ENSMODG00000017919) #32 GTF3C6 (ENSMODG00000042333) #33 AMD1 (ENSMODG00000017924) #34 ENSMODG00000042473 CDK19 (ENSMODG00000017926) #36 Marsupialia_b ANCESTRAL SPECIES 1 ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00390000009168 #13 ENSGT00940000160861.a ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a.n #16 ENSGT01030000234610.a.a.m #16 ENSGT00390000006522.b #17 ENSGT00940000163953 #19 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 ENSGT00940000160723 #37 Diprotodontia ANCESTRAL SPECIES 15 ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00390000009168 #13 ENSGT00940000160861.a ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a.n #16 ENSGT01030000234610.a.a.m #16 ENSGT00390000006522.b #17 ENSGT00940000163953 #19 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 ENSGT00940000160723 #37 Diprotodontia_a ANCESTRAL SPECIES 23 ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00390000009168 #13 ENSGT00940000160861.a ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a.n #16 ENSGT01030000234610.a.a.m #16 ENSGT00390000006522.b #17 ENSGT00940000163953 #19 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B.db #30 ENSGT00530000063320.B.eb #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510.a #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 koala MODERN SPECIES 127 HS3ST5 (ENSPCIG00000035773) #21 HDAC2 (ENSPCIG00000025858) #22 MARCKS (ENSPCIG00000025859) #23 ENSPCIG00000025864 ENSPCIG00000016524 ENSPCIG00000003023 ENSPCIG00000017502 LAMA4 (ENSPCIG00000013918) #24 FAM229B (ENSPCIG00000013913) TUBE1 (ENSPCIG00000013909) #25 CCN6 (ENSPCIG00000013904) #26 ENSPCIG00000035801 FYN (ENSPCIG00000007339) #27 ENSPCIG00000007341 ENSPCIG00000007348 REV3L (ENSPCIG00000007344) #29 ENSPCIG00000033261 #30 Common wonbat MODERN SPECIES 426 GPRC6A (ENSVURG00010023032) KPNA5 (ENSVURG00010023019) ENSVURG00010023013 ENSVURG00010023011 RSPH4A (ENSVURG00010023005) RWDD1 (ENSVURG00010022993) #13 ENSVURG00010022985 CALHM4 (ENSVURG00010022981) ##16 CALHM5 (ENSVURG00010022978) ##16 ENSVURG00010022974 #15 DSE (ENSVURG00010022960) #17 ENSVURG00010022951 #19 NT5DC1 (ENSVURG00010022944) #18 FRK (ENSVURG00010022934) #20 HS3ST5 (ENSVURG00010022928) #21 HDAC2 (ENSVURG00010022910) #22 MARCKS (ENSVURG00010022906) #23 ENSVURG00010022899 LAMA4 (ENSVURG00010022847) #24 FAM229B (ENSVURG00010022837) TUBE1 (ENSVURG00010022830) #25 CCN6 (ENSVURG00010022820) #26 ENSVURG00010022817 FYN (ENSVURG00010022801) #27 TRAF3IP2 (ENSVURG00010022795) REV3L (ENSVURG00010022785) #29 ENSVURG00010022778 #30 ENSVURG00010022781 #30 Wallaby MODERN SPECIES 9644 ENSMEUG00000014779 #22 Tasmanian devil MODERN SPECIES 3 ZUP1 (ENSSHAG00000017118) RSPH4A (ENSSHAG00000007508) RWDD1 (ENSSHAG00000030217) #13 ENSSHAG00000025679 CALHM4 (ENSSHAG00000006568) ##16 TRAPPC3L (ENSSHAG00000005649) #15 CALHM5 (ENSSHAG00000023597) ##16 ENSSHAG00000004138 #16 ENSSHAG00000025331 #16 DSE (ENSSHAG00000000534) #17 NT5DC1 (ENSSHAG00000018559) #18 ENSSHAG00000018580 #19 FRK (ENSSHAG00000018366) #20 ENSSHAG00000021743 HS3ST5 (ENSSHAG00000026218) #21 HDAC2 (ENSSHAG00000029979) #22 MARCKS (ENSSHAG00000032396) #23 ENSSHAG00000030163 LAMA4 (ENSSHAG00000014100) #24 FAM229B (ENSSHAG00000014011) TUBE1 (ENSSHAG00000013871) #25 CCN6 (ENSSHAG00000013692) #26 FYN (ENSSHAG00000010594) #27 TRAF3IP2 (ENSSHAG00000009775) REV3L (ENSSHAG00000006121) #29 MFSD4B (ENSSHAG00000005396) #30 SLC16A10 (ENSSHAG00000002106) #31 RPF2 (ENSSHAG00000002212) #32 AMD1 (ENSSHAG00000027662) #34 GTF3C6 (ENSSHAG00000023524) #33 CDK19 (ENSSHAG00000002539) #36 Eutheria ANCESTRAL SPECIES 9 ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000154317.a.b ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 Boreoeutheria ANCESTRAL SPECIES 7 ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00960000188119 ENSGT00940000154317.a.b ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000164609 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 Laurasiatheria ANCESTRAL SPECIES 7 ENSGT00500000044869.a.a ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00960000188119 ENSGT00940000154317.a.b ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000164609 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 Eulipotyphla ANCESTRAL SPECIES ENSGT00940000155725 #22 Common shrew MODERN SPECIES 6391 HDAC2 (ENSSARG00000000354) #22 Hedgehog MODERN SPECIES 14611 HDAC2 (ENSEEUG00000005998) #22 Laurasiatheria_a ANCESTRAL SPECIES 7 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT01010000228913 ENSGT00940000154317.a.b ENSGT00960000188119 ENSGT00940000163953 #19 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000164609 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 Laurasiatheria_b ANCESTRAL SPECIES 7 ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT01010000228913 ENSGT00940000154317.a.b ENSGT00960000188119 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 Carnivora ANCESTRAL SPECIES 4 ENSGT00500000044869.a.a ENSGT00940000156772.i #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00960000188119 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT01050000247848 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 Felidae ANCESTRAL SPECIES 5 ENSGT00940000156772.i.b #11 ENSGT00940000156772.i.a.a #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000166162 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00960000188119 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT01050000247848 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 Panthera ANCESTRAL SPECIES 7 ENSGT00940000156772.i.b #11 ENSGT00940000156772.i.a.a #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000166162 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00960000188119 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT01050000247848 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000166307 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 Panthera_a ANCESTRAL SPECIES 4 ENSGT00940000156772.i.b #11 ENSGT00940000156772.i.a.a #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000166162 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00960000188119 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT01050000247848 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000166307 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000003710.c.a.a lion MODERN SPECIES 5 RSPH4A (ENSPLOG00000003687) ENSPLOG00000003653 #11 RWDD1 (ENSPLOG00000003637) #13 CALHM4 (ENSPLOG00000003619) ##16 CALHM5 (ENSPLOG00000003609) ##16 TRAPPC3L (ENSPLOG00000003593) #15 CALHM6 (ENSPLOG00000003580) #16 DSE (ENSPLOG00000003558) #17 ENSPLOG00000003526 TSPYL4 (ENSPLOG00000003518) COL10A1 (ENSPLOG00000003502) ENSPLOG00000003489 NT5DC1 (ENSPLOG00000003475) #18 FRK (ENSPLOG00000003455) #20 HS3ST5 (ENSPLOG00000003442) #21 HDAC2 (ENSPLOG00000003360) #22 ENSPLOG00000003352 MARCKS (ENSPLOG00000003280) #23 ENSPLOG00000003271 LAMA4 (ENSPLOG00000003185) #24 FAM229B (ENSPLOG00000003138) TUBE1 (ENSPLOG00000003122) #25 CCN6 (ENSPLOG00000003072) #26 FYN (ENSPLOG00000003022) #27 TRAF3IP2 (ENSPLOG00000002899) REV3L (ENSPLOG00000002720) #29 MFSD4B (ENSPLOG00000002667) #30 SLC16A10 (ENSPLOG00000002639) #31 ENSPLOG00000002611 #32 ENSPLOG00000002599 GTF3C6 (ENSPLOG00000002572) #33 leopard MODERN SPECIES 8 HS3ST5 (ENSPPRG00000001482) #21 HDAC2 (ENSPPRG00000001858) #22 ENSPPRG00000016421 MARCKS (ENSPPRG00000002079) #23 LAMA4 (ENSPPRG00000008450) #24 FAM229B (ENSPPRG00000008910) TUBE1 (ENSPPRG00000009003) #25 CCN6 (ENSPPRG00000010602) #26 ENSPPRG00000016675 FYN (ENSPPRG00000013454) #27 TRAF3IP2 (ENSPPRG00000024379) REV3L (ENSPPRG00000023393) #29 MFSD4B (ENSPPRG00000023123) #30 SLC16A10 (ENSPPRG00000022877) #31 ENSPPRG00000017018 ENSPPRG00000000320 #32 ENSPPRG00000017034 Tiger MODERN SPECIES 120 ZUP1 (ENSPTIG00000013533) RSPH4A (ENSPTIG00000014297) ENSPTIG00000014529 #11 ENSPTIG00000014688 #11 RWDD1 (ENSPTIG00000014973) #13 CALHM4 (ENSPTIG00000015112) ##16 TRAPPC3L (ENSPTIG00000015246) #15 CALHM5 (ENSPTIG00000015346) ##16 ENSPTIG00000015377 #16 DSE (ENSPTIG00000015410) #17 TSPYL4 (ENSPTIG00000006365) NT5DC1 (ENSPTIG00000016386) #18 COL10A1 (ENSPTIG00000016999) FRK (ENSPTIG00000017241) #20 HS3ST5 (ENSPTIG00000017379) #21 HDAC2 (ENSPTIG00000017437) #22 ENSPTIG00000006376 RFPL4B (ENSPTIG00000006386) LAMA4 (ENSPTIG00000017802) #24 FAM229B (ENSPTIG00000019248) TUBE1 (ENSPTIG00000019262) #25 CCN6 (ENSPTIG00000019399) #26 ENSPTIG00000006415 FYN (ENSPTIG00000019895) #27 TRAF3IP2 (ENSPTIG00000020472) REV3L (ENSPTIG00000021002) #29 MFSD4B (ENSPTIG00000021195) #30 ENSPTIG00000021259 #31 ENSPTIG00000021281 #31 RPF2 (ENSPTIG00000002060) #32 GTF3C6 (ENSPTIG00000002889) #33 Cat MODERN SPECIES 236 RSPH4A (ENSFCAG00000027641) ENSFCAG00000052457 #11 ENSFCAG00000047240 ENSFCAG00000034736 #11 RWDD1 (ENSFCAG00000025905) #13 CALHM4 (ENSFCAG00000040211) ##16 CALHM5 (ENSFCAG00000033745) ##16 TRAPPC3L (ENSFCAG00000021987) #15 ENSFCAG00000029592 #16 DSE (ENSFCAG00000023622) #17 TSPYL4 (ENSFCAG00000013418) COL10A1 (ENSFCAG00000040804) NT5DC1 (ENSFCAG00000013415) #18 FRK (ENSFCAG00000004043) #20 HS3ST5 (ENSFCAG00000000523) #21 HDAC2 (ENSFCAG00000018836) #22 ENSFCAG00000051478 MARCKS (ENSFCAG00000042952) #23 LAMA4 (ENSFCAG00000006308) #24 FAM229B (ENSFCAG00000030116) TUBE1 (ENSFCAG00000026151) #25 CCN6 (ENSFCAG00000006305) #26 FYN (ENSFCAG00000023350) #27 TRAF3IP2 (ENSFCAG00000000667) REV3L (ENSFCAG00000028995) #29 MFSD4B (ENSFCAG00000045303) #30 SLC16A10 (ENSFCAG00000029036) #31 AMD1 (ENSFCAG00000028033) #34 CDK19 (ENSFCAG00000040944) #36 SLC22A16 (ENSFCAG00000030142) #37 DDO (ENSFCAG00000001658) Caniformia ANCESTRAL SPECIES 3 ENSGT00500000044869.a.a ENSGT00940000156772.i #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00960000188119 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 Canidae ANCESTRAL SPECIES 6 ENSGT00940000156603 ENSGT00940000157474 ENSGT00550000075035.o.a.a ENSGT00530000063168.b ENSGT00940000159781 ENSGT00390000001024.k ENSGT00940000155172 ENSGT00390000018879 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00960000188119 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 Canis_lupus ANCESTRAL SPECIES 11 ENSGT00940000156603 ENSGT00940000157474 ENSGT00550000075035.o.a.a ENSGT00530000063168.b ENSGT00940000159781 ENSGT00390000001024.k ENSGT00940000155172 ENSGT00390000018879 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00960000188119 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT01080000259263 ENSGT00390000000510 #33 Dog MODERN SPECIES 3 PDCD2 (ENSCAFG00845023205) TBP (ENSCAFG00845023066) PSMB1 (ENSCAFG00845022992) FAM120B (ENSCAFG00845022558) ENSCAFG00845022293 ENSCAFG00845021897 PHF10 (ENSCAFG00845021475) ENSCAFG00845021410 ENSCAFG00845021373 COL10A1 (ENSCAFG00845021317) ENSCAFG00845021286 NT5DC1 (ENSCAFG00845021137) #18 FRK (ENSCAFG00845021028) #20 HS3ST5 (ENSCAFG00845020885) #21 HDAC2 (ENSCAFG00845020776) #22 MARCKS (ENSCAFG00845020726) #23 ENSCAFG00845020682 RFPL4B (ENSCAFG00845020657) LAMA4 (ENSCAFG00845018962) #24 FAM229B (ENSCAFG00845018489) TUBE1 (ENSCAFG00845018424) #25 ENSCAFG00845018276 #26 TRAF3IP2 (ENSCAFG00845017640) #27 TRAF3IP2 (ENSCAFG00845017420) REV3L (ENSCAFG00845016962) #29 MFSD4B (ENSCAFG00845016736) #30 SLC16A10 (ENSCAFG00845016609) #31 RPF2 (ENSCAFG00845016436) #32 ENSCAFG00845016352 GTF3C6 (ENSCAFG00845016303) #33 Dingo MODERN SPECIES 370 TBP (ENSCAFG00020019866) PSMB1 (ENSCAFG00020019862) FAM120B (ENSCAFG00020019856) DLL1 (ENSCAFG00020019845) ERMARD (ENSCAFG00020019774) PHF10 (ENSCAFG00020019765) C6orf120 (ENSCAFG00020019764) TSPYL1 (ENSCAFG00020019760) ENSCAFG00020019756 COL10A1 (ENSCAFG00020019750) ENSCAFG00020019748 NT5DC1 (ENSCAFG00020019743) #18 FRK (ENSCAFG00020019726) #20 ENSCAFG00020019717 HS3ST5 (ENSCAFG00020019700) #21 HDAC2 (ENSCAFG00020019696) #22 ENSCAFG00020019692 MARCKS (ENSCAFG00020019690) #23 ENSCAFG00020019685 ENSCAFG00020019681 LAMA4 (ENSCAFG00020019035) #24 FAM229B (ENSCAFG00020018944) TUBE1 (ENSCAFG00020018924) #25 CCN6 (ENSCAFG00020018917) #26 FYN (ENSCAFG00020018907) #27 TRAF3IP2 (ENSCAFG00020018894) REV3L (ENSCAFG00020018742) #29 MFSD4B (ENSCAFG00020018726) #30 ENSCAFG00020018721 #31 ENSCAFG00020018718 #31 ENSCAFG00020018714 #32 Red fox MODERN SPECIES 54 PDCD2 (ENSVVUG00000006970) TBP (ENSVVUG00000006960) ENSVVUG00000006957 FAM120B (ENSVVUG00000006926) DLL1 (ENSVVUG00000006909) ERMARD (ENSVVUG00000006881) PHF10 (ENSVVUG00000006864) C6orf120 (ENSVVUG00000006858) ENSVVUG00000006850 ENSVVUG00000006846 COL10A1 (ENSVVUG00000006844) NT5DC1 (ENSVVUG00000006840) #18 FRK (ENSVVUG00000006830) #20 ENSVVUG00000006819 HS3ST5 (ENSVVUG00000006812) #21 HDAC2 (ENSVVUG00000006805) #22 ENSVVUG00000006800 LAMA4 (ENSVVUG00000006752) #24 FAM229B (ENSVVUG00000006738) TUBE1 (ENSVVUG00000006727) #25 ENSVVUG00000006721 #26 ENSVVUG00000006716 #26 FYN (ENSVVUG00000006695) #27 TRAF3IP2 (ENSVVUG00000006691) REV3L (ENSVVUG00000006624) #29 MFSD4B (ENSVVUG00000006613) #30 SLC16A10 (ENSVVUG00000006601) #31 ENSVVUG00000006593 #32 GTF3C6 (ENSVVUG00000006584) #33 AMD1 (ENSVVUG00000006573) #34 CDK19 (ENSVVUG00000006550) #36 Caniformia_b ANCESTRAL SPECIES 6 ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00940000156772.i #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 Mustelinae ANCESTRAL SPECIES 26 ENSGT00950000182985.b.a ENSGT01100000263517.b.d.m.a.a.a.a.d.b.u.b ENSGT01030000235909 ENSGT01100000263517.b.d.m.a.a.a.a.d.b.u.a.a.a ENSGT01100000263517.b.d.m.a.a.a.a.c.k ENSGT01100000263517.b.d.m.a.a.a.a.d.b.u.a.b ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000153112.D.h.c.a ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510.o #33 ENSGT00390000011776 #34 American mink MODERN SPECIES 4 ENSNVIG00000006654 ENSNVIG00000006638 ENSNVIG00000006632 ENSNVIG00000006590 ENSNVIG00000006567 ENSNVIG00000006546 ENSNVIG00000006541 CALHM5 (ENSNVIG00000006537) ##16 ENSNVIG00000006528 #15 DSE (ENSNVIG00000006494) #17 TSPYL4 (ENSNVIG00000006466) COL10A1 (ENSNVIG00000006451) NT5DC1 (ENSNVIG00000006445) #18 FRK (ENSNVIG00000006423) #20 HS3S5 (ENSNVIG00000006412) #21 HDAC2 (ENSNVIG00000006360) #22 ENSNVIG00000006342 RFPL4B (ENSNVIG00000006333) LAMA4 (ENSNVIG00000006222) #24 CF225 (ENSNVIG00000006208) TUBE1 (ENSNVIG00000006184) #25 CCN6 (ENSNVIG00000006099) #26 ENSNVIG00000006071 FYN (ENSNVIG00000005821) #27 TRAF3IP2 (ENSNVIG00000005784) REV3L (ENSNVIG00000005635) #29 MFSD4B (ENSNVIG00000005609) #30 SLC16A10 (ENSNVIG00000005582) #31 RPF2 (ENSNVIG00000005572) #32 ENSNVIG00000005569 ENSNVIG00000005535 #33 Ferret MODERN SPECIES 201 ENSMPUG00000010380 ENSMPUG00000010376 ENSMPUG00000010372 ENSMPUG00000010367 ENSMPUG00000010351 ENSMPUG00000010344 CALHM5 (ENSMPUG00000010338) ##16 DSE (ENSMPUG00000010332) #17 TSPYL1 (ENSMPUG00000019136) TSPYL4 (ENSMPUG00000019131) COL10A1 (ENSMPUG00000010327) NT5DC1 (ENSMPUG00000010294) #18 FRK (ENSMPUG00000010284) #20 HS3ST5 (ENSMPUG00000010276) #21 ENSMPUG00000019130 HDAC2 (ENSMPUG00000010268) #22 RFPL4B (ENSMPUG00000019127) LAMA4 (ENSMPUG00000010247) #24 TUBE1 (ENSMPUG00000010238) #25 CCN6 (ENSMPUG00000010231) #26 ENSMPUG00000019124 FYN (ENSMPUG00000010222) #27 ENSMPUG00000010210 REV3L (ENSMPUG00000010198) #29 MFSD4B (ENSMPUG00000010196) #30 SLC16A10 (ENSMPUG00000010191) #31 RPF2 (ENSMPUG00000010183) #32 ENSMPUG00000010179 #33 AMD1 (ENSMPUG00000010171) #34 ENSMPUG00000010159 CDK19 (ENSMPUG00000010147) #36 Ursidae ANCESTRAL SPECIES 22 ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00940000156772.i #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213.f #36 Ursus ANCESTRAL SPECIES 159 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213.f #36 ENSGT00940000160723 #37 Polar bear MODERN SPECIES 286 HS3ST5 (ENSUMAG00000025454) #21 HDAC2 (ENSUMAG00000025457) #22 ENSUMAG00000025462 LAMA4 (ENSUMAG00000025464) #24 FAM229B (ENSUMAG00000025465) TUBE1 (ENSUMAG00000025466) #25 CCN6 (ENSUMAG00000025477) #26 FYN (ENSUMAG00000025480) #27 TRAF3IP2 (ENSUMAG00000025482) REV3L (ENSUMAG00000025485) #29 MFSD4B (ENSUMAG00000025486) #30 SLC16A10 (ENSUMAG00000025487) #31 RPF2 (ENSUMAG00000025488) #32 GTF3C6 (ENSUMAG00000025489) #33 AMD1 (ENSUMAG00000025490) #34 CDK19 (ENSUMAG00000025491) #36 SLC22A16 (ENSUMAG00000025492) #37 American black bear MODERN SPECIES 3242 HS3ST5 (ENSUAMG00000001513) #21 HDAC2 (ENSUAMG00000000102) #22 ENSUAMG00000000020 Giant Panda MODERN SPECIES 1 ENSAMEG00000023971 ENSAMEG00000005725 #11 ENSAMEG00000005716 #11 RWDD1 (ENSAMEG00000005692) #13 CALHM4 (ENSAMEG00000005689) ##16 CALHM5 (ENSAMEG00000005685) ##16 TRAPPC3L (ENSAMEG00000005682) #15 CALHM6 (ENSAMEG00000005679) #16 DSE (ENSAMEG00000005674) #17 TSPYL1 (ENSAMEG00000005672) TSPYL4 (ENSAMEG00000019723) COL10A1 (ENSAMEG00000013356) NT5DC1 (ENSAMEG00000005670) #18 FRK (ENSAMEG00000013338) #20 HS3ST5 (ENSAMEG00000013224) #21 HDAC2 (ENSAMEG00000013147) #22 ENSAMEG00000025271 ENSAMEG00000031393 RFPL4B (ENSAMEG00000019194) LAMA4 (ENSAMEG00000016747) #24 FAM229B (ENSAMEG00000027978) TUBE1 (ENSAMEG00000016737) #25 CCN6 (ENSAMEG00000016733) #26 FYN (ENSAMEG00000016721) #27 TRAF3IP2 (ENSAMEG00000016716) REV3L (ENSAMEG00000011341) #29 MFSD4B (ENSAMEG00000015796) #30 SLC16A10 (ENSAMEG00000015783) #31 RPF2 (ENSAMEG00000015753) #32 GTF3C6 (ENSAMEG00000003535) #33 AMD1 (ENSAMEG00000003500) #34 Laurasiatheria_c ANCESTRAL SPECIES 6 ENSGT00500000044869.a.a ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT01010000228913 ENSGT00940000154317.a.b ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 Equus ANCESTRAL SPECIES 29 ENSGT00940000156772.p.a #11 ENSGT00940000156772.o #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT01010000228913 ENSGT00940000154317.a.b ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 Horse MODERN SPECIES 1 ENSECAG00000051393 #11 RWDD1 (ENSECAG00000006587) #13 CALHM4 (ENSECAG00000000714) ##16 CALHM5 (ENSECAG00000023268) ##16 TRAPPC3L (ENSECAG00000021978) #15 ENSECAG00000051818 ENSECAG00000021708 #16 DSE (ENSECAG00000020975) #17 ENSECAG00000031694 TSPYL4 (ENSECAG00000030611) TSPYL1 (ENSECAG00000003736) COL10A1 (ENSECAG00000020826) NT5DC1 (ENSECAG00000019833) #18 FRK (ENSECAG00000018039) #20 HS3ST5 (ENSECAG00000018033) #21 HDAC2 (ENSECAG00000013577) #22 ENSECAG00000055511 MARCKS (ENSECAG00000003398) #23 RFPL4B (ENSECAG00000041082) LAMA4 (ENSECAG00000018584) #24 TUBE1 (ENSECAG00000013843) #25 CCN6 (ENSECAG00000013347) #26 FYN (ENSECAG00000008319) #27 TRAF3IP2 (ENSECAG00000000591) REV3L (ENSECAG00000022502) #29 MFSD4B (ENSECAG00000049140) #30 MFSD4B (ENSECAG00000021803) #31 RPF2 (ENSECAG00000017121) #32 GTF3C6 (ENSECAG00000014214) #33 AMD1 (ENSECAG00000011198) #34 CDK19 (ENSECAG00000009893) #36 Donkey MODERN SPECIES 16 ENSEASG00005031003 #11 ENSEASG00005008382 #11 RWDD1 (ENSEASG00005008380) #13 CALHM4 (ENSEASG00005008379) ##16 CALHM5 (ENSEASG00005008378) ##16 TRAPPC3L (ENSEASG00005029591) #15 ENSEASG00005008375 #16 DSE (ENSEASG00005008373) #17 TSPYL1 (ENSEASG00005032253) TSPYL4 (ENSEASG00005008371) COL10A1 (ENSEASG00005008370) NT5DC1 (ENSEASG00005008369) #18 FRK (ENSEASG00005008367) #20 HS3ST5 (ENSEASG00005033931) #21 ENSEASG00005029672 HDAC2 (ENSEASG00005008358) #22 MARCKS (ENSEASG00005008354) #23 RFPL4B (ENSEASG00005038508) LAMA4 (ENSEASG00005008172) #24 FAM229B (ENSEASG00005028359) TUBE1 (ENSEASG00005008069) #25 CCN6 (ENSEASG00005008053) #26 FYN (ENSEASG00005007033) #27 TRAF3IP2 (ENSEASG00005006984) REV3L (ENSEASG00005006955) #29 MFSD4B (ENSEASG00005032739) #30 SLC16A10 (ENSEASG00005006939) #31 ENSEASG00005006934 RPF2 (ENSEASG00005006927) #32 GTF3C6 (ENSEASG00005006921) #33 ENSEASG00005006847 #34 Chiroptera ANCESTRAL SPECIES 3 ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 Microchiroptera ANCESTRAL SPECIES 4 ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 Microbat DUPLICATION Microbat MODERN SPECIES 948 ENSMLUG00000028504 ENSMLUG00000001381 STX11 (ENSMLUG00000011714) UTRN (ENSMLUG00000009057) EPM2A (ENSMLUG00000008697) FBXO30 (ENSMLUG00000025404) SHPRH (ENSMLUG00000009078) GRM1 (ENSMLUG00000004518) RAB32 (ENSMLUG00000004529) ADGB (ENSMLUG00000004534) STXBP5 (ENSMLUG00000012900) SAMD5 (ENSMLUG00000023292) SASH1 (ENSMLUG00000010290) FRK (ENSMLUG00000011037) #20 HS3ST5 (ENSMLUG00000015782) #21 ENSMLUG00000003117 #22 ENSMLUG00000026449 ENSMLUG00000009577 ENSMLUG00000024219 ENSMLUG00000026832 ENSMLUG00000000796 #24 FAM229B (ENSMLUG00000000794) TUBE1 (ENSMLUG00000027246) #25 CCN6 (ENSMLUG00000007436) #26 FYN (ENSMLUG00000007330) #27 TRAF3IP2 (ENSMLUG00000009049) REV3L (ENSMLUG00000012102) #29 MFSD4B (ENSMLUG00000010354) #30 SLC16A10 (ENSMLUG00000012085) #31 ENSMLUG00000025057 RPF2 (ENSMLUG00000005676) #32 Microbat MODERN SPECIES 1103 C14orf39 (ENSMLUG00000013215) SIX6 (ENSMLUG00000013235) SIX1 (ENSMLUG00000002337) SIX4 (ENSMLUG00000002346) MNAT1 (ENSMLUG00000002350) TRMT5 (ENSMLUG00000002357) ENSMLUG00000002362 PRKCH (ENSMLUG00000003390) ENSMLUG00000026403 HIF1A (ENSMLUG00000015244) SNAPC1 (ENSMLUG00000015254) SYT16 (ENSMLUG00000017452) ENSMLUG00000029240 ENSMLUG00000017454 KCNH5 (ENSMLUG00000000601) ENSMLUG00000004124 #22 RHOJ (ENSMLUG00000009378) GPHB5 (ENSMLUG00000010506) PPP2R5E (ENSMLUG00000010512) ENSMLUG00000029245 Greater horseshoe bat MODERN SPECIES 21 RSPH4A (ENSRFEG00010017838) ENSRFEG00010017801 #11 ENSRFEG00010017788 #11 ENSRFEG00010017720 #11 ENSRFEG00010017650 #13 CALHM4 (ENSRFEG00010017600) ##16 CALHM5 (ENSRFEG00010017554) ##16 TRAPPC3L (ENSRFEG00010017466) #15 CALHM6 (ENSRFEG00010017443) #16 DSE (ENSRFEG00010017346) #17 COL10A1 (ENSRFEG00010017207) NT5DC1 (ENSRFEG00010017166) #18 FRK (ENSRFEG00010017139) #20 ENSRFEG00010017121 HS3ST5 (ENSRFEG00010017069) #21 HDAC2 (ENSRFEG00010016988) #22 MARCKS (ENSRFEG00010016931) #23 RFPL4B (ENSRFEG00010016880) LAMA4 (ENSRFEG00010016795) #24 FAM229B (ENSRFEG00010016724) TUBE1 (ENSRFEG00010016655) #25 CCN6 (ENSRFEG00010016469) #26 FYN (ENSRFEG00010016290) #27 ENSRFEG00010016261 TRAF3IP2 (ENSRFEG00010016167) ENSRFEG00010016106 REV3L (ENSRFEG00010015594) #29 ENSRFEG00010015568 MFSD4B (ENSRFEG00010015553) #30 SLC16A10 (ENSRFEG00010015461) #31 RPF2 (ENSRFEG00010015426) #32 Megabat MODERN SPECIES 2461 HS3ST5 (ENSPVAG00000006078) #21 HDAC2 (ENSPVAG00000006077) #22 Artiodactyla ANCESTRAL SPECIES 19 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT01010000228913 ENSGT00940000154317.a.b ENSGT00960000188119 ENSGT00940000163953 #19 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 Suina ANCESTRAL SPECIES 18 ENSGT00950000183068.b ENSGT00940000161538 ENSGT00390000013639 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00960000188119 ENSGT00940000154317.a.b ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 ENSGT00940000160723 #37 Chacoan peccary MODERN SPECIES 61 LGSN (ENSCWAG00000009373) RWDD1 (ENSCWAG00000009319) #13 CALHM4 (ENSCWAG00000009259) ##16 CALHM5 (ENSCWAG00000009224) ##16 TRAPPC3L (ENSCWAG00000009152) #15 CALHM6 (ENSCWAG00000009128) #16 DSE (ENSCWAG00000009050) #17 TSPYL1 (ENSCWAG00000009025) TSPYL4 (ENSCWAG00000009011) ENSCWAG00000008967 ENSCWAG00000008941 COL10A1 (ENSCWAG00000008896) NT5DC1 (ENSCWAG00000008856) #18 FRK (ENSCWAG00000008748) #20 HS3ST5 (ENSCWAG00000008713) #21 HDAC2 (ENSCWAG00000008651) #22 ENSCWAG00000008580 MARCKS (ENSCWAG00000008550) #23 LAMA4 (ENSCWAG00000008444) #24 FAM229B (ENSCWAG00000008405) TUBE1 (ENSCWAG00000008369) #25 CCN6 (ENSCWAG00000008211) #26 FYN (ENSCWAG00000008006) #27 TRAF3IP2 (ENSCWAG00000007854) REV3L (ENSCWAG00000007668) #29 MFSD4B (ENSCWAG00000007620) #30 SLC16A10 (ENSCWAG00000007573) #31 RPF2 (ENSCWAG00000007546) #32 GTF3C6 (ENSCWAG00000007500) #33 AMD1 (ENSCWAG00000007419) #34 CDK19 (ENSCWAG00000007377) #36 Pig MODERN SPECIES ENSSSCG00000023415 #11 ENSSSCG00000025656 #11 ENSSSCG00000004446 #13 CALHM4 (ENSSSCG00000004445) ##16 CALHM5 (ENSSSCG00000031898) ##16 TRAPPC3L (ENSSSCG00000040660) #15 CALHM6 (ENSSSCG00000036064) #16 DSE (ENSSSCG00000004441) #17 TSPYL1 (ENSSSCG00000004438) TSPYL4 (ENSSSCG00000047800) COL10A1 (ENSSSCG00000004436) NT5DC1 (ENSSSCG00000004435) #18 FRK (ENSSSCG00000004434) #20 ENSSSCG00000042456 HS3ST5 (ENSSSCG00000004433) #21 HDAC2 (ENSSSCG00000004432) #22 MARCKS (ENSSSCG00000037803) #23 ENSSSCG00000047473 ENSSSCG00000043946 RFPL4B (ENSSSCG00000050324) ENSSSCG00000062211 LAMA4 (ENSSSCG00000004425) #24 FAM229B (ENSSSCG00000036621) TUBE1 (ENSSSCG00000004423) #25 CCN6 (ENSSSCG00000004422) #26 FYN (ENSSSCG00000004421) #27 TRAF3IP2 (ENSSSCG00000004420) ENSSSCG00000044325 REV3L (ENSSSCG00000025703) #29 MFSD4B (ENSSSCG00000041409) #30 SLC16A10 (ENSSSCG00000004419) #31 Artiodactyla_a ANCESTRAL SPECIES 21 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT01010000228913 ENSGT00940000154317.a.b ENSGT00960000188119 ENSGT00940000163953 #19 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 Camelidae ANCESTRAL SPECIES 26 ENSGT00940000156772.q.a #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000163953 #19 ENSGT00940000155676 #18 ENSGT00940000154317.a.b ENSGT00960000188119 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 Arabian camel MODERN SPECIES 34 RSPH4A (ENSCDRG00005002922) ENSCDRG00005002955 #11 RWDD1 (ENSCDRG00005002965) #13 CALHM4 (ENSCDRG00005002979) ##16 TRAPPC3L (ENSCDRG00005002989) #15 CALHM5 (ENSCDRG00005003006) ##16 CALHM6 (ENSCDRG00005003016) #16 DSE (ENSCDRG00005003068) #17 TSPYL1 (ENSCDRG00005003092) TSPYL4 (ENSCDRG00005003098) NT5DC1 (ENSCDRG00005003104) #18 COL10A1 (ENSCDRG00005003121) ENSCDRG00005003130 FRK (ENSCDRG00005003143) #20 HS3ST5 (ENSCDRG00005003162) #21 HDAC2 (ENSCDRG00005003171) #22 ENSCDRG00005003186 MARCKS (ENSCDRG00005003193) #23 ENSCDRG00005003222 LAMA4 (ENSCDRG00005003254) #24 FAM229B (ENSCDRG00005003348) TUBE1 (ENSCDRG00005003362) #25 CCN6 (ENSCDRG00005003392) #26 FYN (ENSCDRG00005003505) #27 TRAF3IP2 (ENSCDRG00005003676) REV3L (ENSCDRG00005003796) #29 MFSD4B (ENSCDRG00005004003) #30 SLC16A10 (ENSCDRG00005004030) #31 RPF2 (ENSCDRG00005004072) #32 GTF3C6 (ENSCDRG00005004107) #33 AMD1 (ENSCDRG00005004169) #34 Alpaca MODERN SPECIES 2130 HS3ST5 (ENSVPAG00000001514) #21 HDAC2 (ENSVPAG00000001513) #22 ENSVPAG00000001512 Artiodactyla_b ANCESTRAL SPECIES 18 ENSGT00940000156772.r #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT01010000228913 ENSGT00940000154317.a.b ENSGT00960000188119 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 Cetacea ANCESTRAL SPECIES 18 ENSGT00940000156772.r #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT01010000228913 ENSGT00940000154317.a.b ENSGT00960000188119 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 Odontoceti ANCESTRAL SPECIES 18 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT01010000228913 ENSGT00940000154317.a.b ENSGT00960000188119 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00390000010210.g ENSGT00940000158991 #21 ENSGT00940000154951.j.b ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000154326.a.b.b Sperm whale MODERN SPECIES 1 ENSPCTG00005013836 #11 RWDD1 (ENSPCTG00005013868) #13 CALHM4 (ENSPCTG00005013957) ##16 CALHM5 (ENSPCTG00005013991) ##16 ENSPCTG00005014023 #15 CALHM6 (ENSPCTG00005014068) #16 DSE (ENSPCTG00005014130) #17 TSPYL1 (ENSPCTG00005014244) TSPYL4 (ENSPCTG00005014296) NT5DC1 (ENSPCTG00005014318) #18 COL10A1 (ENSPCTG00005014373) FRK (ENSPCTG00005014412) #20 ENSPCTG00005014516 HS3ST5 (ENSPCTG00005014555) #21 ENSPCTG00005014592 HDAC2 (ENSPCTG00005014660) #22 MARCKS (ENSPCTG00005014735) #23 RFPL4B (ENSPCTG00005014764) LAMA4 (ENSPCTG00005014812) #24 FAM229B (ENSPCTG00005015125) TUBE1 (ENSPCTG00005015173) #25 CCN6 (ENSPCTG00005015245) #26 FYN (ENSPCTG00005015522) #27 ENSPCTG00005015669 ENSPCTG00005008699 TRAF3IP2 (ENSPCTG00005008763) REV3L (ENSPCTG00005008924) #29 MFSD4B (ENSPCTG00005009605) #30 SLC16A10 (ENSPCTG00005009640) #31 RPF2 (ENSPCTG00005009742) #32 GTF3C6 (ENSPCTG00005009889) #33 Odontoceti_a DUPLICATION Odontoceti_a DUPLICATION Odontoceti_a ANCESTRAL SPECIES 16 ENSGT00390000009168 #13 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT01010000228913 ENSGT00940000154317.a.b ENSGT00960000188119 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00390000010210.g ENSGT00940000158991 #21 ENSGT00940000154951.j.b ENSGT00940000155725.c.a #22 ENSGT00390000010526 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776.e.a #34 Odontoceti_b ANCESTRAL SPECIES 18 ENSGT00390000009168 #13 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT01010000228913 ENSGT00940000154317.a.b ENSGT00960000188119 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00390000010210.g ENSGT00940000158991 #21 ENSGT00940000154951.j.b ENSGT00940000155725.c.a #22 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776.e.a #34 ENSGT00940000154326.a.b.b Monodontidae ANCESTRAL SPECIES 18 ENSGT00940000156772.r #11 ENSGT00390000009168 #13 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT01010000228913 ENSGT00940000154317.a.b ENSGT00960000188119 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000154951.j.b ENSGT00940000155725.c.a #22 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00940000153169.A.b.b.a.a.a.a.d ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776.e.a #34 Narwhal MODERN SPECIES 301 ENSMMNG00015005470 #11 RWDD1 (ENSMMNG00015005444) #13 CALHM5 (ENSMMNG00015005431) ##16 ENSMMNG00015005423 #15 CALHM6 (ENSMMNG00015005416) #16 DSE (ENSMMNG00015005398) #17 TSPYL1 (ENSMMNG00015005374) TSPYL4 (ENSMMNG00015005368) ENSMMNG00015005366 COL10A1 (ENSMMNG00015005355) ENSMMNG00015005344 NT5DC1 (ENSMMNG00015005330) #18 FRK (ENSMMNG00015005316) #20 HS3ST5 (ENSMMNG00015005299) #21 ENSMMNG00015005291 ENSMMNG00015005256 #22 MARCKS (ENSMMNG00015005242) #23 RFPL4B (ENSMMNG00015005237) LAMA4 (ENSMMNG00015005201) #24 ENSMMNG00015005185 TUBE1 (ENSMMNG00015005178) #25 CCN6 (ENSMMNG00015005163) #26 FYN (ENSMMNG00015005064) #27 TRAF3IP2 (ENSMMNG00015005042) REV3L (ENSMMNG00015005006) #29 MFSD4B (ENSMMNG00015004993) #30 ENSMMNG00015004990 SLC16A10 (ENSMMNG00015004978) #31 ENSMMNG00015004972 RPF2 (ENSMMNG00015004963) #32 GTF3C6 (ENSMMNG00015004955) #33 Beluga whale MODERN SPECIES 80 ENSDLEG00000009142 #11 RWDD1 (ENSDLEG00000009107) #13 CALHM5 (ENSDLEG00000009096) ##16 TRAPPC3L (ENSDLEG00000009065) #15 CALHM6 (ENSDLEG00000009051) #16 DSE (ENSDLEG00000009031) #17 TSPYL1 (ENSDLEG00000009017) TSPYL4 (ENSDLEG00000009007) ENSDLEG00000008984 ENSDLEG00000008963 COL10A1 (ENSDLEG00000008950) NT5DC1 (ENSDLEG00000008913) #18 FRK (ENSDLEG00000008878) #20 HS3ST5 (ENSDLEG00000008858) #21 ENSDLEG00000008835 ENSDLEG00000008805 #22 MARCKS (ENSDLEG00000008765) #23 ENSDLEG00000008750 LAMA4 (ENSDLEG00000008657) #24 ENSDLEG00000008624 TUBE1 (ENSDLEG00000008584) #25 CCN6 (ENSDLEG00000008512) #26 FYN (ENSDLEG00000008452) #27 TRAF3IP2 (ENSDLEG00000008417) REV3L (ENSDLEG00000008237) #29 MFSD4B (ENSDLEG00000008187) #30 SLC16A10 (ENSDLEG00000008136) #31 ENSDLEG00000018675 RPF2 (ENSDLEG00000018669) #32 GTF3C6 (ENSDLEG00000018662) #33 AMD1 (ENSDLEG00000018608) #34 Vaquita MODERN SPECIES 3 RSPH4A (ENSPSNG00000014807) ENSPSNG00000015114 ENSPSNG00000015188 #11 RWDD1 (ENSPSNG00000015291) #13 CALHM5 (ENSPSNG00000015370) ##16 ENSPSNG00000015417 #15 CALHM6 (ENSPSNG00000015458) #16 DSE (ENSPSNG00000015522) #17 TSPYL1 (ENSPSNG00000008248) TSPYL4 (ENSPSNG00000008269) NT5DC1 (ENSPSNG00000008301) #18 COL10A1 (ENSPSNG00000008333) FRK (ENSPSNG00000008357) #20 ENSPSNG00000008427 HS3ST5 (ENSPSNG00000008454) #21 ENSPSNG00000008494 #22 MARCKS (ENSPSNG00000008534) #23 RFPL4B (ENSPSNG00000008570) LAMA4 (ENSPSNG00000008592) #24 ENSPSNG00000008695 TUBE1 (ENSPSNG00000008724) #25 CCN6 (ENSPSNG00000008779) #26 FYN (ENSPSNG00000008944) #27 TRAF3IP2 (ENSPSNG00000009031) REV3L (ENSPSNG00000009147) #29 MFSD4B (ENSPSNG00000009218) #30 SLC16A10 (ENSPSNG00000009264) #31 ENSPSNG00000009319 RPF2 (ENSPSNG00000009364) #32 GTF3C6 (ENSPSNG00000009391) #33 ENSPSNG00000009433 #34 Dolphin MODERN SPECIES 1188 HS3ST5 (ENSTTRG00000015046) #21 HDAC2 (ENSTTRG00000015043) #22 ENSTTRG00000015041 ENSTTRG00000015040 Odontoceti_a ANCESTRAL SPECIES ENSGT00940000155725.c.b #22 Odontoceti_b ANCESTRAL SPECIES 1 ENSGT00390000008160 ENSGT00510000048500 ENSGT00940000156466 ENSGT00390000018651 ENSGT00390000007918 ENSGT00390000006320 ENSGT00940000161387 ENSGT00940000155464 ENSGT00390000010427.c ENSGT00800000124150 ENSGT00390000016532 ENSGT00390000015433 ENSGT00950000182993.A.b ENSGT00940000158504 ENSGT00940000155776 ENSGT00940000155725.c.b #22 ENSGT00940000160851 ENSGT00390000002096 ENSGT01010000228899 ENSGT00530000063460.A.b ENSGT00940000153239.B.n ENSGT00940000159777 ENSGT00940000155567 ENSGT01050000244902.a.a.a.a ENSGT00390000017462 ENSGT00940000158865 ENSGT00390000005254.i.a.a.a.a ENSGT00940000156804 ENSGT00940000161231 ENSGT00940000156814 ENSGT00940000158747 Monodontidae ANCESTRAL SPECIES 7 ENSGT00390000008160 ENSGT00510000048500 ENSGT00940000156466 ENSGT00390000018651 ENSGT00390000007918 ENSGT00390000006320 ENSGT00940000161387 ENSGT00940000155464 ENSGT00390000010427.c ENSGT00800000124150 ENSGT00390000016532 ENSGT00390000015433 ENSGT00950000182993.A.b ENSGT00940000158504 ENSGT00940000155776 ENSGT00940000155725.c.b #22 ENSGT00940000160851 ENSGT00390000002096 ENSGT01010000228899 ENSGT00530000063460.A.b ENSGT00940000153239.B.n ENSGT00940000159777 ENSGT00940000155567 ENSGT01050000244902.a.a.a.a ENSGT00390000017462 ENSGT00940000158865 ENSGT00390000005254.i.a.b.c ENSGT00940000162106 ENSGT00940000156804 ENSGT00940000161231 ENSGT00940000156814 Beluga whale MODERN SPECIES 71 ENSDLEG00000013232 IL7R (ENSDLEG00000013219) CAPSL (ENSDLEG00000013190) LMBRD2 (ENSDLEG00000013120) SKP2 (ENSDLEG00000013093) NADK2 (ENSDLEG00000013071) RANBP3L (ENSDLEG00000012986) SLC1A3 (ENSDLEG00000012807) NIPBL (ENSDLEG00000012577) CPLANE1 (ENSDLEG00000012250) NUP155 (ENSDLEG00000011741) WDR70 (ENSDLEG00000011311) GDNF (ENSDLEG00000011285) EGFLAM (ENSDLEG00000011222) LIFR (ENSDLEG00000011161) ENSDLEG00000011140 #22 OSMR (ENSDLEG00000011096) RICTOR (ENSDLEG00000008761) ENSDLEG00000008508 ENSDLEG00000008494 ENSDLEG00000008481 C9 (ENSDLEG00000008449) DAB2 (ENSDLEG00000008396) PTGER4 (ENSDLEG00000008354) TTC33 (ENSDLEG00000008324) PRKAA1 (ENSDLEG00000008270) ENSDLEG00000008233 ENSDLEG00000008197 ENSDLEG00000008182 C7 (ENSDLEG00000008142) ENSDLEG00000008047 Narwhal MODERN SPECIES 298 IL7R (ENSMMNG00015001861) CAPSL (ENSMMNG00015001898) LMBRD2 (ENSMMNG00015001929) SKP2 (ENSMMNG00015002022) RANBP3L (ENSMMNG00015002191) SLC1A3 (ENSMMNG00015002486) NIPBL (ENSMMNG00015002616) CPLANE1 (ENSMMNG00015002752) NUP155 (ENSMMNG00015002811) WDR70 (ENSMMNG00015002899) GDNF (ENSMMNG00015003016) ENSMMNG00015003038 EGFLAM (ENSMMNG00015003099) LIFR (ENSMMNG00015003256) ENSMMNG00015003285 ENSMMNG00015003299 #22 OSMR (ENSMMNG00015003314) RICTOR (ENSMMNG00015003392) ENSMMNG00015003438 FYB1 (ENSMMNG00015003499) ENSMMNG00015003575 C9 (ENSMMNG00015003592) DAB2 (ENSMMNG00015003683) PTGER4 (ENSMMNG00015003808) TTC33 (ENSMMNG00015003825) PRKAA1 (ENSMMNG00015003860) RPL37 (ENSMMNG00015003911) ENSMMNG00015003941 C7 (ENSMMNG00015003958) MROH2B (ENSMMNG00015003995) C6 (ENSMMNG00015004038) Vaquita MODERN SPECIES 14 IL7R (ENSPSNG00000005251) CAPSL (ENSPSNG00000005192) LMBRD2 (ENSPSNG00000005130) SKP2 (ENSPSNG00000004995) NADK2 (ENSPSNG00000004871) RANBP3L (ENSPSNG00000004771) SLC1A3 (ENSPSNG00000004628) NIPBL (ENSPSNG00000004448) CPLANE1 (ENSPSNG00000004315) NUP155 (ENSPSNG00000004202) WDR70 (ENSPSNG00000004131) GDNF (ENSPSNG00000004104) EGFLAM (ENSPSNG00000003979) LIFR (ENSPSNG00000003881) ENSPSNG00000003863 ENSPSNG00000003851 #22 OSMR (ENSPSNG00000003821) RICTOR (ENSPSNG00000003768) ENSPSNG00000003737 FYB1 (ENSPSNG00000003635) C9 (ENSPSNG00000003566) DAB2 (ENSPSNG00000003484) ENSPSNG00000003449 PTGER4 (ENSPSNG00000003430) TTC33 (ENSPSNG00000003417) PRKAA1 (ENSPSNG00000003371) RPL37 (ENSPSNG00000003299) C7 (ENSPSNG00000003232) ENSPSNG00000003175 ENSPSNG00000003137 C6 (ENSPSNG00000003100) Odontoceti_a ANCESTRAL SPECIES ENSGT00940000155725.d #22 Odontoceti_b ANCESTRAL SPECIES ENSGT00940000155725.d #22 Monodontidae ANCESTRAL SPECIES ENSGT00940000155725.d #22 Beluga whale MODERN SPECIES 74 ADGRB2 (ENSDLEG00000015967) ENSDLEG00000016158 PTP4A2 (ENSDLEG00000016188) KHDRBS1 (ENSDLEG00000016203) TMEM39B (ENSDLEG00000016227) KPNA6 (ENSDLEG00000016316) TXLNA (ENSDLEG00000016350) IQCC (ENSDLEG00000016388) DCDC2B (ENSDLEG00000016404) TMEM234 (ENSDLEG00000016459) EIF3I (ENSDLEG00000016503) ENSDLEG00000016518 FAM167B (ENSDLEG00000016525) LCK (ENSDLEG00000016576) ENSDLEG00000017157 ENSDLEG00000017216 #22 MARCKSL1 (ENSDLEG00000017226) FAM229A (ENSDLEG00000017233) TSSK3 (ENSDLEG00000017237) BSDC1 (ENSDLEG00000017241) ZBTB8B (ENSDLEG00000017257) ZBTB8A (ENSDLEG00000017270) ZBTB8OS (ENSDLEG00000017281) RBBP4 (ENSDLEG00000017302) SYNC (ENSDLEG00000017332) KIAA1522 (ENSDLEG00000017345) YARS (ENSDLEG00000017384) S100PBP (ENSDLEG00000017439) FNDC5 (ENSDLEG00000017464) HPCA (ENSDLEG00000017497) TMEM54 (ENSDLEG00000017522) Blue whale DUPLICATION Blue whale MODERN SPECIES 20 TAC1 (ENSBMSG00010010326) ASNS (ENSBMSG00010010358) C1GALT1 (ENSBMSG00010010380) MIOS (ENSBMSG00010010390) RPA3 (ENSBMSG00010010396) UMAD1 (ENSBMSG00010010406) ENSBMSG00010010413 GLCCI1 (ENSBMSG00010010429) ICA1 (ENSBMSG00010010462) NXPH1 (ENSBMSG00010010502) ENSBMSG00010010516 ENSBMSG00010010526 PHF14 (ENSBMSG00010010545) THSD7A (ENSBMSG00010010586) ENSBMSG00010010647 ENSBMSG00010010662 #22 ENSBMSG00010010686 TMEM106B (ENSBMSG00010010694) ENSBMSG00010010723 SCIN (ENSBMSG00010010783) ARL4A (ENSBMSG00010010815) ENSBMSG00010010822 ETV1 (ENSBMSG00010005654) DGKB (ENSBMSG00010005756) AGMO (ENSBMSG00010005878) MEOX2 (ENSBMSG00010005896) CRPPA (ENSBMSG00010005928) ENSBMSG00010005949 SOSTDC1 (ENSBMSG00010005959) LRRC72 (ENSBMSG00010005977) ANKMY2 (ENSBMSG00010005991) Blue whale MODERN SPECIES 3 KPNA5 (ENSBMSG00010012836) ZUP1 (ENSBMSG00010012859) RSPH4A (ENSBMSG00010012884) ENSBMSG00010012918 #11 RWDD1 (ENSBMSG00010012927) #13 CALHM5 (ENSBMSG00010012937) ##16 ENSBMSG00010012945 #15 CALHM6 (ENSBMSG00010012947) #16 DSE (ENSBMSG00010012963) #17 TSPYL1 (ENSBMSG00010012974) TSPYL4 (ENSBMSG00010012977) NT5DC1 (ENSBMSG00010012985) #18 COL10A1 (ENSBMSG00010012998) FRK (ENSBMSG00010013005) #20 HS3ST5 (ENSBMSG00010013020) #21 ENSBMSG00010013029 #22 MARCKS (ENSBMSG00010013045) #23 RFPL4B (ENSBMSG00010013050) LAMA4 (ENSBMSG00010013059) #24 ENSBMSG00010013077 TUBE1 (ENSBMSG00010013084) #25 CCN6 (ENSBMSG00010013102) #26 FYN (ENSBMSG00010013133) #27 ENSBMSG00010013144 REV3L (ENSBMSG00010013172) #29 MFSD4B (ENSBMSG00010013236) #30 SLC16A10 (ENSBMSG00010013246) #31 RPF2 (ENSBMSG00010013277) #32 ENSBMSG00010013288 GTF3C6 (ENSBMSG00010013300) #33 ENSBMSG00010013316 #34 Pecora ANCESTRAL SPECIES 19 ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00940000156772.q.a #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000155676 #18 ENSGT00940000154317.a.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 Percora_a ANCESTRAL SPECIES 21 ENSGT00940000156772.q.b #11 ENSGT00390000009168.v.a #13 ENSGT00940000156772.q.a #11 ENSGT00390000009168.v.b #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000155676 #18 ENSGT00940000154317.a.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 ENSGT00940000160723 #37 Siberian musk deer DUPLICATION Siberian musk deer DUPLICATION Siberian musk deer DUPLICATION Siberian musk deer MODERN SPECIES 55 CALHM4 (ENSMMSG00000004408) ##16 TRAPPC3L (ENSMMSG00000004425) #15 CALHM5 (ENSMMSG00000004430) ##16 CALHM6 (ENSMMSG00000004443) #16 DSE (ENSMMSG00000004477) #17 TSPYL1 (ENSMMSG00000004513) TSPYL4 (ENSMMSG00000004521) NT5DC1 (ENSMMSG00000004536) #18 COL10A1 (ENSMMSG00000004611) FRK (ENSMMSG00000004640) #20 ENSMMSG00000004714 ENSMMSG00000004817 ENSMMSG00000004842 ENSMMSG00000004852 HS3ST5 (ENSMMSG00000004861) #21 ENSMMSG00000004892 #22 MARCKS (ENSMMSG00000004987) #23 Siberian musk deer MODERN SPECIES 167 ENSMMSG00000000884 ENSMMSG00000000856 ENSMMSG00000000834 ATF6 (ENSMMSG00000000815) OLFML2B (ENSMMSG00000000781) SPATA46 (ENSMMSG00000000755) ENSMMSG00000000662 SH2D1B (ENSMMSG00000000630) UHMK1 (ENSMMSG00000000594) UAP1 (ENSMMSG00000000525) DDR2 (ENSMMSG00000000474) HSD17B7 (ENSMMSG00000000442) CCDC190 (ENSMMSG00000000408) RGS4 (ENSMMSG00000000380) RGS5 (ENSMMSG00000000360) ENSMMSG00000000335 #22 NUF2 (ENSMMSG00000000308) ENSMMSG00000000290 ENSMMSG00000000280 ENSMMSG00000000264 ENSMMSG00000000243 ENSMMSG00000000231 Siberian musk deer MODERN SPECIES 70 NR2E3 (ENSMMSG00000004110) THSD4 (ENSMMSG00000004083) ENSMMSG00000004067 LRRC49 (ENSMMSG00000003982) ENSMMSG00000003958 LARP6 (ENSMMSG00000003942) UACA (ENSMMSG00000003879) TLE3 (ENSMMSG00000002903) RPLP1 (ENSMMSG00000002749) KIF23 (ENSMMSG00000002616) PAQR5 (ENSMMSG00000002566) GLCE (ENSMMSG00000002545) NOX5 (ENSMMSG00000002533) ENSMMSG00000002508 ENSMMSG00000002461 ENSMMSG00000002437 #22 CORO2B (ENSMMSG00000002385) ITGA11 (ENSMMSG00000002350) FEM1B (ENSMMSG00000002327) CLN6 (ENSMMSG00000002230) CALML4 (ENSMMSG00000002206) PIAS1 (ENSMMSG00000002174) SKOR1 (ENSMMSG00000002112) MAP2K5 (ENSMMSG00000001850) C15orf61 (ENSMMSG00000001796) IQCH (ENSMMSG00000001575) AAGAB (ENSMMSG00000001517) SMAD3 (ENSMMSG00000001493) SMAD6 (ENSMMSG00000001473) LCTL (ENSMMSG00000001442) ZWILCH (ENSMMSG00000001358) Siberian musk deer MODERN SPECIES 1175 PLA2G1B (ENSMMSG00000014109) MSI1 (ENSMMSG00000014066) COX6A1 (ENSMMSG00000014048) TRIAP1 (ENSMMSG00000014035) ENSMMSG00000014016 SRSF9 (ENSMMSG00000013991) ENSMMSG00000013964 COQ5 (ENSMMSG00000013926) RNF10 (ENSMMSG00000013817) POP5 (ENSMMSG00000013781) CABP1 (ENSMMSG00000013673) MLEC (ENSMMSG00000013635) ENSMMSG00000013608 ACADS (ENSMMSG00000013595) ENSMMSG00000013578 ENSMMSG00000013561 #22 SPPL3 (ENSMMSG00000013539) HNF1A (ENSMMSG00000013459) C12orf43 (ENSMMSG00000013415) C12orf76 (ENSMMSG00000013399) ENSMMSG00000013391 ANKRD13A (ENSMMSG00000013361) GIT2 (ENSMMSG00000013172) ENSMMSG00000013080 GLTP (ENSMMSG00000013040) TRPV4 (ENSMMSG00000012850) FAM222A (ENSMMSG00000012822) MVK (ENSMMSG00000012760) MMAB (ENSMMSG00000012694) UBE3B (ENSMMSG00000012639) KCTD10 (ENSMMSG00000012596) Bovidae ANCESTRAL SPECIES 21 ENSGT00500000044869.a.a ENSGT00940000156772.q.b #11 ENSGT00940000156772.q.a #11 ENSGT00390000009168.v.b #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000155676 #18 ENSGT00940000154317.a.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 ENSGT00940000160723 #37 Caprinae ANCESTRAL SPECIES 33 ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00940000156772.q.a #11 ENSGT00390000009168.v.a.b #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000155676 #18 ENSGT00940000154317.a.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 ENSGT00940000160723 #37 Goat MODERN SPECIES 28 ZUP1 (ENSCHIG00000022998) RSPH4A (ENSCHIG00000022737) ENSCHIG00000014681 #11 ENSCHIG00000020636 #13 CALHM4 (ENSCHIG00000006125) ##16 TRAPPC3L (ENSCHIG00000021481) #15 CALHM5 (ENSCHIG00000018702) ##16 ENSCHIG00000022717 #16 ENSCHIG00000025860 #16 DSE (ENSCHIG00000010064) #17 TSPYL1 (ENSCHIG00000013019) NT5DC1 (ENSCHIG00000025209) #18 COL10A1 (ENSCHIG00000008425) FRK (ENSCHIG00000006701) #20 HS3ST5 (ENSCHIG00000019513) #21 HDAC2 (ENSCHIG00000024213) #22 MARCKS (ENSCHIG00000009392) #23 LAMA4 (ENSCHIG00000019560) #24 FAM229B (ENSCHIG00000018398) TUBE1 (ENSCHIG00000020635) #25 CCN6 (ENSCHIG00000025400) #26 FYN (ENSCHIG00000009044) #27 TRAF3IP2 (ENSCHIG00000019593) REV3L (ENSCHIG00000023002) #29 MFSD4B (ENSCHIG00000014717) #30 SLC16A10 (ENSCHIG00000023773) #31 RPF2 (ENSCHIG00000022499) #32 ENSCHIG00000002412 GTF3C6 (ENSCHIG00000014023) #33 ENSCHIG00000020077 #34 CDK19 (ENSCHIG00000023212) #36 Rambouillet Sheep MODERN SPECIES 24 ZUP1 (ENSOARG00020004156) ENSOARG00020004418 ENSOARG00020004445 #13 CALHM4 (ENSOARG00020004478) ##16 TRAPPC3L (ENSOARG00020004501) #15 CALHM5 (ENSOARG00020004537) ##16 DSE (ENSOARG00020004597) #17 TSPYL1 (ENSOARG00020004668) ENSOARG00020004681 ENSOARG00020004693 NT5DC1 (ENSOARG00020004710) #18 COL10A1 (ENSOARG00020004849) FRK (ENSOARG00020004867) #20 ENSOARG00020004910 HS3ST5 (ENSOARG00020004941) #21 HDAC2 (ENSOARG00020004977) #22 MARCKS (ENSOARG00020005081) #23 LAMA4 (ENSOARG00020005126) #24 FAM229B (ENSOARG00020005460) TUBE1 (ENSOARG00020005476) #25 CCN6 (ENSOARG00020005518) #26 FYN (ENSOARG00020005590) #27 TRAF3IP2 (ENSOARG00020005751) REV3L (ENSOARG00020005845) #29 MFSD4B (ENSOARG00020005958) #30 SLC16A10 (ENSOARG00020005971) #31 ENSOARG00020006024 #32 ENSOARG00020006085 GTF3C6 (ENSOARG00020006112) #33 ENSOARG00020006151 #34 CDK19 (ENSOARG00020006220) #36 Bovinae ANCESTRAL SPECIES 31 ENSGT00500000044869.a.a ENSGT00940000156772.q.b #11 ENSGT00940000156772.q.a #11 ENSGT00390000009168.v.b #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821.g.a ENSGT00940000162991 ENSGT00940000155676 #18 ENSGT00940000154317.a.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00950000183123.g.a.a.a ENSGT00390000000510 #33 ENSGT00390000011776.i.a #34 ENSGT00940000158213 #36 Bos ANCESTRAL SPECIES 19 ENSGT00500000044869.a.a ENSGT00940000156772.q.b #11 ENSGT00940000156772.q.a #11 ENSGT00390000009168.v.b #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821.g.a ENSGT00940000162991 ENSGT00940000155676 #18 ENSGT00940000154317.a.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00950000183123.g.a.a.a ENSGT00390000000510 #33 ENSGT00390000011776.i.a #34 ENSGT00940000158213 #36 Bos_b ANCESTRAL SPECIES 24 ENSGT00940000156772.q.b #11 ENSGT00940000156772.q.a #11 ENSGT00940000156772.r #11 ENSGT00390000009168.v.b #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821.g.a ENSGT00940000162991 ENSGT00940000155676 #18 ENSGT00940000154317.a.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723.c #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776.i.a #34 ENSGT00940000158213 #36 ENSGT00940000160723 #37 ENSGT00390000018635.c Hybrid Bos Indicus MODERN SPECIES 28 RSPH4A (ENSBIXG00005010221) ENSBIXG00005010142 #11 ENSBIXG00005010118 #11 ENSBIXG00005006416 #13 CALHM4 (ENSBIXG00005010065) ##16 TRAPPC3L (ENSBIXG00005010050) #15 CALHM5 (ENSBIXG00005000765) ##16 CALHM6 (ENSBIXG00005010017) #16 DSE (ENSBIXG00005009989) #17 ENSBIXG00005009950 TSPYL4 (ENSBIXG00005009942) NT5DC1 (ENSBIXG00005009924) #18 COL10A1 (ENSBIXG00005009915) FRK (ENSBIXG00005009902) #20 HS3ST5 (ENSBIXG00005000647) #21 HDAC2 (ENSBIXG00005005946) #22 ENSBIXG00005009805 MARCKS (ENSBIXG00005005803) #23 ENSBIXG00005009782 LAMA4 (ENSBIXG00005009675) #24 FAM229B (ENSBIXG00005009541) ENSBIXG00005009508 #25 ENSBIXG00005009470 #26 FYN (ENSBIXG00005009408) #27 ENSBIXG00005009341 REV3L (ENSBIXG00005000458) #29 MFSD4B (ENSBIXG00005009220) #30 SLC16A10 (ENSBIXG00005009197) #31 RPF2 (ENSBIXG00005009172) #32 ENSBIXG00005000398 ENSBIXG00005009127 #34 Cow MODERN SPECIES 28 ENSBTAG00000050815 #11 SULT1C4 (ENSBTAG00000026672) #11 RWDD1 (ENSBTAG00000009689) #13 CALHM4 (ENSBTAG00000033535) ##16 TRAPPC3L (ENSBTAG00000033554) #15 CALHM5 (ENSBTAG00000045879) ##16 CALHM6 (ENSBTAG00000006549) #16 DSE (ENSBTAG00000005205) #17 TSPYL1 (ENSBTAG00000010885) TSPYL4 (ENSBTAG00000009127) NT5DC1 (ENSBTAG00000003076) #18 COL10A1 (ENSBTAG00000003078) FRK (ENSBTAG00000020018) #20 HS3ST5 (ENSBTAG00000000188) #21 ENSBTAG00000049305 HDAC2 (ENSBTAG00000011849) #22 MARCKS (ENSBTAG00000002082) #23 LAMA4 (ENSBTAG00000008817) #24 FAM229B (ENSBTAG00000033429) TUBE1 (ENSBTAG00000013837) #25 CCN6 (ENSBTAG00000017205) #26 FYN (ENSBTAG00000011851) #27 TRAF3IP2 (ENSBTAG00000008600) REV3L (ENSBTAG00000010760) #29 MFSD4B (ENSBTAG00000009243) #30 SLC16A10 (ENSBTAG00000009239) #31 RPF2 (ENSBTAG00000016584) #32 AMD1 (ENSBTAG00000003342) #34 CDK19 (ENSBTAG00000007288) #36 SLC22A16 (ENSBTAG00000010507) #37 DDO (ENSBTAG00000033367) Bos_a ANCESTRAL SPECIES 18 ENSGT00500000044869.a.a ENSGT00940000156772.q.b #11 ENSGT00940000156772.q.a #11 ENSGT00390000009168.v.b #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821.g.a ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776.i.a #34 ENSGT00390000011776.i.b.b #34 ENSGT00940000158213 #36 Domestic yak MODERN SPECIES 1 ZUP1 (ENSBGRG00000005961) RSPH4A (ENSBGRG00000005878) ENSBGRG00000005844 #11 RWDD1 (ENSBGRG00000005754) #13 CALHM4 (ENSBGRG00000005714) ##16 CALHM5 (ENSBGRG00000005669) ##16 TRAPPC3L (ENSBGRG00000005625) #15 CALHM6 (ENSBGRG00000005600) #16 DSE (ENSBGRG00000005532) #17 ENSBGRG00000005510 TSPYL4 (ENSBGRG00000005502) COL10A1 (ENSBGRG00000005476) NT5DC1 (ENSBGRG00000005373) #18 FRK (ENSBGRG00000005311) #20 HS3ST5 (ENSBGRG00000013854) #21 HDAC2 (ENSBGRG00000013629) #22 MARCKS (ENSBGRG00000013546) #23 ENSBGRG00000013525 ENSBGRG00000013503 ENSBGRG00000013479 LAMA4 (ENSBGRG00000012696) #24 FAM229B (ENSBGRG00000012646) TUBE1 (ENSBGRG00000012582) #25 ENSBGRG00000012563 #26 CCN6 (ENSBGRG00000012418) #26 FYN (ENSBGRG00000012279) #27 TRAF3IP2 (ENSBGRG00000012139) REV3L (ENSBGRG00000011672) #29 MFSD4B (ENSBGRG00000011553) #30 SLC16A10 (ENSBGRG00000011302) #31 RPF2 (ENSBGRG00000011065) #32 Wild yak MODERN SPECIES 101 HS3ST5 (ENSBMUG00000005703) #21 HDAC2 (ENSBMUG00000005689) #22 ENSBMUG00000005668 ENSBMUG00000005661 ENSBMUG00000005647 American bison MODERN SPECIES 3287 FRK (ENSBBBG00000011782) #20 HS3ST5 (ENSBBBG00000008545) #21 HDAC2 (ENSBBBG00000011761) #22 ENSBBBG00000011743 LAMA4 (ENSBBBG00000011737) #24 ENSBBBG00000011650 FAM229B (ENSBBBG00000011635) TUBE1 (ENSBBBG00000011630) #25 CCN6 (ENSBBBG00000011621) #26 FYN (ENSBBBG00000002130) #27 TRAF3IP2 (ENSBBBG00000011480) REV3L (ENSBBBG00000007120) #29 MFSD4B (ENSBBBG00000002022) #30 SLC16A10 (ENSBBBG00000002075) #31 RPF2 (ENSBBBG00000011366) #32 ENSBBBG00000011360 GTF3C6 (ENSBBBG00000011352) #33 ENSBBBG00000011347 #34 Yarkand deer DUPLICATION Yarkand deer MODERN SPECIES 20 ZUP1 (ENSCHYG00000022708) RSPH4A (ENSCHYG00000022831) ENSCHYG00000023038 #11 ENSCHYG00000023080 #13 CALHM4 (ENSCHYG00000023149) ##16 TRAPPC3L (ENSCHYG00000023206) #15 CALHM5 (ENSCHYG00000023274) ##16 CALHM6 (ENSCHYG00000023311) #16 ENSCHYG00000023336 #17 ENSCHYG00000023415 TSPYL4 (ENSCHYG00000023428) NT5DC1 (ENSCHYG00000023450) #18 COL10A1 (ENSCHYG00000023514) FRK (ENSCHYG00000023541) #20 HS3ST5 (ENSCHYG00000023609) #21 ENSCHYG00000023650 #22 ENSCHYG00000023836 MARCKS (ENSCHYG00000023854) #23 LAMA4 (ENSCHYG00000023891) #24 FAM229B (ENSCHYG00000024251) TUBE1 (ENSCHYG00000024271) #25 CCN6 (ENSCHYG00000024312) #26 FYN (ENSCHYG00000024400) #27 TRAF3IP2 (ENSCHYG00000024612) REV3L (ENSCHYG00000024696) #29 MFSD4B (ENSCHYG00000024789) #30 SLC16A10 (ENSCHYG00000014098) #31 RPF2 (ENSCHYG00000014157) #32 GTF3C6 (ENSCHYG00000014253) #33 AMD1 (ENSCHYG00000014416) #34 CDK19 (ENSCHYG00000014534) #36 Yarkand deer DUPLICATION Yarkand deer MODERN SPECIES 17 ENSCHYG00000025617 ENSCHYG00000025645 ENSCHYG00000025738 ENSCHYG00000025792 ENSCHYG00000025809 ENSCHYG00000025829 ENSCHYG00000013824 ENSCHYG00000013983 ENSCHYG00000014127 ENSCHYG00000014468 ENSCHYG00000015370 RAB3C (ENSCHYG00000015400) ENSCHYG00000015504 ENSCHYG00000015561 ENSCHYG00000015616 ENSCHYG00000015676 #22 ENSCHYG00000016088 ENSCHYG00000016344 ENSCHYG00000016430 ENSCHYG00000016691 ENSCHYG00000016828 ENSCHYG00000018737 ENSCHYG00000018755 ENSCHYG00000018847 ENSCHYG00000018955 ENSCHYG00000019040 ENSCHYG00000019164 ENSCHYG00000019268 ENSCHYG00000019650 ENSCHYG00000019672 ENSCHYG00000019719 Yarkand deer MODERN SPECIES 17 ENSCHYG00000024736 ENSCHYG00000024802 ENSCHYG00000024828 ENSCHYG00000024869 ENSCHYG00000024899 ENSCHYG00000024957 ENSCHYG00000024984 ENSCHYG00000025063 ENSCHYG00000025082 ENSCHYG00000025186 ENSCHYG00000025327 ENSCHYG00000025347 ENSCHYG00000025367 ENSCHYG00000025391 HTR1A (ENSCHYG00000025432) ENSCHYG00000025458 #22 ENSCHYG00000025526 ENSCHYG00000025617 ENSCHYG00000025645 ENSCHYG00000025738 ENSCHYG00000025792 ENSCHYG00000025809 ENSCHYG00000025829 ENSCHYG00000013824 ENSCHYG00000013983 ENSCHYG00000014127 ENSCHYG00000014468 ENSCHYG00000015370 RAB3C (ENSCHYG00000015400) ENSCHYG00000015504 ENSCHYG00000015561 Euarchontoglires ANCESTRAL SPECIES 7 ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00960000188119 ENSGT00940000163953 #19 ENSGT00940000155676 #18 ENSGT00940000154317.a.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000164609 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 Primates ANCESTRAL SPECIES 5 ENSGT00500000044869.a.a ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 Haplorrhini ANCESTRAL SPECIES 2 ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723.a #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 Tarsier MODERN SPECIES 6017 HS3ST5 (ENSTSYG00000028005) #21 HDAC2 (ENSTSYG00000009363) #22 Simiiformes ANCESTRAL SPECIES 5 ENSGT00500000044869.a.a ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000155676.q #18 ENSGT00940000154317.a.b ENSGT00940000155676.r #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00910000147939 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723.a #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279.c.a #32 ENSGT00940000155416.a.b.e.b ENSGT00390000007279.d #32 Catarrhini ANCESTRAL SPECIES 5 ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00390000009168.gb #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000155676.r #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00910000147939 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00910000147633 ENSGT00390000017996.b ENSGT00940000155723.a #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00940000155416.a.b.e.b ENSGT00390000007279.c.a #32 ENSGT00390000000510 #33 Cercopithecidae ANCESTRAL SPECIES 4 ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00390000009168.gb #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000155676.r #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00910000147939 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000154281.m.b.a.a.a.a ENSGT00940000159970 #24 ENSGT00910000147633 ENSGT00390000017996.b ENSGT00940000155723.a #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00940000155416.a.b.e.b ENSGT00390000007279.c.a #32 Rhinopithecus ANCESTRAL SPECIES 392 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00910000147633 ENSGT00390000017996.b ENSGT00940000155723.a #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00940000155416.a.b.e.b Black snub-nosed monkey MODERN SPECIES 1316 HS3ST5 (ENSRBIG00000044830) #21 HDAC2 (ENSRBIG00000035973) #22 ENSRBIG00000012937 LAMA4 (ENSRBIG00000030375) #24 FAM229B (ENSRBIG00000039691) TUBE1 (ENSRBIG00000038950) #25 CCN6 (ENSRBIG00000036824) #26 FYN (ENSRBIG00000025572) #27 TRAF3IP2 (ENSRBIG00000028367) REV3L (ENSRBIG00000041032) #29 MFSD4B (ENSRBIG00000036667) #30 SLC16A10 (ENSRBIG00000037091) #31 ENSRBIG00000026441 Golden snub-nosed monkey MODERN SPECIES 3133 HS3ST5 (ENSRROG00000031650) #21 HDAC2 (ENSRROG00000032964) #22 MARCKS (ENSRROG00000034683) #23 Cercopithecinae ANCESTRAL SPECIES 6 ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00390000009168.gb #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000155676.r #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00910000147939 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000154281.m.b.a.a.a.a ENSGT00940000159970 #24 ENSGT00910000147633 ENSGT00390000017996.b ENSGT00940000155723.a #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00940000155416.a.b.e.b ENSGT00390000007279.c.a #32 Vervet Monkey MODERN SPECIES 4 ZUP1 (ENSCSAG00000015785) RSPH4A (ENSCSAG00000015777) RWDD1 (ENSCSAG00000015772) #13 CALHM4 (ENSCSAG00000015763) ##16 TRAPPC3L (ENSCSAG00000015735) #15 CALHM5 (ENSCSAG00000015732) ##16 CALHM6 (ENSCSAG00000015726) #16 DSE (ENSCSAG00000015723) #17 TSPYL1 (ENSCSAG00000018972) TSPYL4 (ENSCSAG00000018973) NT5DC1 (ENSCSAG00000015718) #18 ENSCSAG00000015707 COL10A1 (ENSCSAG00000015703) FRK (ENSCSAG00000015700) #20 HS3ST5 (ENSCSAG00000015695) #21 HDAC2 (ENSCSAG00000015692) #22 MARCKS (ENSCSAG00000015680) #23 RFPL4B (ENSCSAG00000018974) ENSCSAG00000015668 LAMA4 (ENSCSAG00000015643) #24 FAM229B (ENSCSAG00000015632) TUBE1 (ENSCSAG00000015606) #25 CCN6 (ENSCSAG00000015601) #26 FYN (ENSCSAG00000015591) #27 TRAF3IP2 (ENSCSAG00000015586) REV3L (ENSCSAG00000015573) #29 MFSD4B (ENSCSAG00000015562) #30 SLC16A10 (ENSCSAG00000015558) #31 GTF3C6 (ENSCSAG00000015549) #33 AMD1 (ENSCSAG00000015538) #34 CDK19 (ENSCSAG00000015511) #36 Cercopithecinae_a ANCESTRAL SPECIES 6 ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00390000009168.gb #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000155676.r #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00910000147939 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000154281.m.b.a.a.a.a ENSGT00940000159970 #24 ENSGT00910000147633 ENSGT00390000017996.b ENSGT00940000155723.a #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT01100000263504.a.b.a.b.a.b.ob ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00940000155416.a.b.e.b ENSGT00390000007279.c.a #32 Macaca ANCESTRAL SPECIES 9 ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00390000009168.gb #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000155676.r #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00940000159970 #24 ENSGT00910000147633 ENSGT00390000017996.b ENSGT00940000155723.a #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT01100000263504.a.b.a.b.a.b.ob ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00940000155416.a.b.e.b ENSGT00390000007279.c.a #32 ENSGT00390000000510.c #33 Macaca_a ANCESTRAL SPECIES 9 ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00390000009168.gb #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000155676.r #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00390000012138.a.a.j.b ENSGT00950000183105.A.m.a.r.j.a ENSGT00960000190362.E.b ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723.a #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT01100000263504.a.b.a.b.a.b.ob ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279.c.a #32 Rhesus MODERN SPECIES 14 ZUP1 (ENSMMUG00000001806) RSPH4A (ENSMMUG00000001805) RWDD1 (ENSMMUG00000007415) #13 CALHM4 (ENSMMUG00000007414) ##16 CALHM5 (ENSMMUG00000007412) ##16 TRAPPC3L (ENSMMUG00000007413) #15 DSE (ENSMMUG00000007409) #17 TSPYL1 (ENSMMUG00000061148) ENSMMUG00000054037 TSPYL4 (ENSMMUG00000014643) COL10A1 (ENSMMUG00000063074) NT5DC1 (ENSMMUG00000014638) #18 FRK (ENSMMUG00000014635) #20 ENSMMUG00000057271 HS3ST5 (ENSMMUG00000050295) #21 HDAC2 (ENSMMUG00000008937) #22 MARCKS (ENSMMUG00000008934) #23 ENSMMUG00000001200 ENSMMUG00000061031 LAMA4 (ENSMMUG00000013782) #24 ENSMMUG00000061978 FAM229B (ENSMMUG00000052965) TUBE1 (ENSMMUG00000012581) #25 CCN6 (ENSMMUG00000012582) #26 FYN (ENSMMUG00000017017) #27 TRAF3IP2 (ENSMMUG00000002174) REV3L (ENSMMUG00000021533) #29 SLC16A10 (ENSMMUG00000021534) #31 RPF2 (ENSMMUG00000021532) #32 GTF3C6 (ENSMMUG00000059670) #33 ENSMMUG00000053375 Crab-eating macaque MODERN SPECIES 14 KPNA5 (ENSMFAG00000038991) ZUP1 (ENSMFAG00000001086) RSPH4A (ENSMFAG00000038872) RWDD1 (ENSMFAG00000042598) #13 ENSMFAG00000033309 ##16 CALHM5 (ENSMFAG00000052041) ##16 TRAPPC3L (ENSMFAG00000055248) #15 CALHM6 (ENSMFAG00000041853) #16 DSE (ENSMFAG00000033289) #17 COL10A1 (ENSMFAG00000038014) NT5DC1 (ENSMFAG00000038038) #18 FRK (ENSMFAG00000000665) #20 ENSMFAG00000047737 ENSMFAG00000063529 HS3ST5 (ENSMFAG00000061930) #21 HDAC2 (ENSMFAG00000040542) #22 ENSMFAG00000052224 ENSMFAG00000018794 ENSMFAG00000031632 ENSMFAG00000064818 LAMA4 (ENSMFAG00000037073) #24 ENSMFAG00000056511 FAM229B (ENSMFAG00000045226) TUBE1 (ENSMFAG00000043188) #25 CCN6 (ENSMFAG00000038144) #26 FYN (ENSMFAG00000000074) #27 ENSMFAG00000048845 TRAF3IP2 (ENSMFAG00000002710) ENSMFAG00000054213 ENSMFAG00000059257 REV3L (ENSMFAG00000040266) #29 Pig-tailed macaque MODERN SPECIES 290 HS3ST5 (ENSMNEG00000031955) #21 ENSMNEG00000037893 HDAC2 (ENSMNEG00000001940) #22 MARCKS (ENSMNEG00000000430) #23 ENSMNEG00000038587 ENSMNEG00000040319 LAMA4 (ENSMNEG00000036579) #24 ENSMNEG00000037857 FAM229B (ENSMNEG00000033688) TUBE1 (ENSMNEG00000035971) #25 CCN6 (ENSMNEG00000028868) #26 Cercopithecinae_b ANCESTRAL SPECIES 17 ENSGT00500000044869.a.a ENSGT00390000009168.gb #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00860000136122 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000155676.r #18 ENSGT00940000154317.a.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00910000147939 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000154281.m.b.a.a.a.a ENSGT00940000159970 #24 ENSGT00910000147633 ENSGT00390000017996.b ENSGT00940000155723.a #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT01100000263504.a.b.a.b.a.b.ob ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00940000155416.a.b.e.b ENSGT00390000007279.c.a #32 Cercopithecinae_d ANCESTRAL SPECIES 70 ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00390000009168.gb #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00860000136122 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000155676.r #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00910000147939 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000154281.m.b.a.a.a.a ENSGT00940000159970 #24 ENSGT00910000147633 ENSGT00390000017996.b ENSGT00940000155723.a #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00940000155416.a.b.e.b ENSGT00390000007279.c.a #32 ENSGT00390000000510 #33 Drill MODERN SPECIES 1700 HS3ST5 (ENSMLEG00000017342) #21 ENSMLEG00000022821 HDAC2 (ENSMLEG00000040672) #22 ENSMLEG00000042196 ENSMLEG00000038407 LAMA4 (ENSMLEG00000039998) #24 FAM229B (ENSMLEG00000038766) TUBE1 (ENSMLEG00000024647) #25 CCN6 (ENSMLEG00000034915) #26 FYN (ENSMLEG00000031948) #27 ENSMLEG00000022121 TRAF3IP2 (ENSMLEG00000034359) REV3L (ENSMLEG00000028817) #29 ENSMLEG00000036198 MFSD4B (ENSMLEG00000039807) #30 SLC16A10 (ENSMLEG00000028623) #31 ENSMLEG00000028269 ENSMLEG00000012574 #32 Sooty mangabey MODERN SPECIES 590 KPNA5 (ENSCATG00000034707) ZUP1 (ENSCATG00000042362) RSPH4A (ENSCATG00000031193) RWDD1 (ENSCATG00000030010) #13 CALHM4 (ENSCATG00000022187) ##16 CALHM5 (ENSCATG00000013734) ##16 TRAPPC3L (ENSCATG00000039208) #15 CALHM6 (ENSCATG00000041474) #16 DSE (ENSCATG00000039900) #17 ENSCATG00000043899 TSPYL4 (ENSCATG00000041203) COL10A1 (ENSCATG00000019945) NT5DC1 (ENSCATG00000021794) #18 FRK (ENSCATG00000039585) #20 HS3ST5 (ENSCATG00000028503) #21 HDAC2 (ENSCATG00000042591) #22 MARCKS (ENSCATG00000009912) #23 ENSCATG00000023134 ENSCATG00000033527 ENSCATG00000002853 LAMA4 (ENSCATG00000035013) #24 FAM229B (ENSCATG00000033467) TUBE1 (ENSCATG00000036781) #25 CCN6 (ENSCATG00000028548) #26 FYN (ENSCATG00000035201) #27 TRAF3IP2 (ENSCATG00000036455) ENSCATG00000030898 #29 MFSD4B (ENSCATG00000038086) #30 SLC16A10 (ENSCATG00000042971) #31 ENSCATG00000032421 RPF2 (ENSCATG00000034352) #32 Olive baboon MODERN SPECIES 16 CALHM4 (ENSPANG00000013290) ##16 TRAPPC3L (ENSPANG00000024071) #15 CALHM5 (ENSPANG00000006250) ##16 CALHM6 (ENSPANG00000038049) #16 ENSPANG00000044624 DSE (ENSPANG00000000826) #17 ENSPANG00000044294 TSPYL1 (ENSPANG00000007994) TSPYL4 (ENSPANG00000035333) NT5DC1 (ENSPANG00000024103) #18 COL10A1 (ENSPANG00000022055) FRK (ENSPANG00000015735) #20 ENSPANG00000045691 ENSPANG00000039146 HS3ST5 (ENSPANG00000020863) #21 HDAC2 (ENSPANG00000004969) #22 MARCKS (ENSPANG00000023060) #23 ENSPANG00000049180 ENSPANG00000040680 ENSPANG00000032439 LAMA4 (ENSPANG00000012999) #24 FAM229B (ENSPANG00000046703) TUBE1 (ENSPANG00000005681) #25 CCN6 (ENSPANG00000021139) #26 FYN (ENSPANG00000003402) #27 TRAF3IP2 (ENSPANG00000022012) ENSPANG00000046707 REV3L (ENSPANG00000020083) #29 ENSPANG00000041335 MFSD4B (ENSPANG00000006921) #30 SLC16A10 (ENSPANG00000005013) #31 Hominoidea ANCESTRAL SPECIES 4 ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00390000009168.gb #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000155676.r #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00910000147633 ENSGT00390000017996.b ENSGT00940000155723.a #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00940000155416.a.b.e.b ENSGT00390000007279.c.a #32 ENSGT00390000000510.e #33 Gibbon MODERN SPECIES 18 RSPH4A (ENSNLEG00000013151) RWDD1 (ENSNLEG00000013133) #13 CALHM4 (ENSNLEG00000028191) ##16 CALHM5 (ENSNLEG00000013129) ##16 TRAPPC3L (ENSNLEG00000013121) #15 CALHM6 (ENSNLEG00000013120) #16 ENSNLEG00000032216 DSE (ENSNLEG00000013106) #17 TSPYL1 (ENSNLEG00000019148) ENSNLEG00000018478 TSPYL4 (ENSNLEG00000013105) COL10A1 (ENSNLEG00000013102) NT5DC1 (ENSNLEG00000013080) #18 FRK (ENSNLEG00000013075) #20 HS3ST5 (ENSNLEG00000013070) #21 HDAC2 (ENSNLEG00000013058) #22 MARCKS (ENSNLEG00000034431) #23 LAMA4 (ENSNLEG00000013000) #24 FAM229B (ENSNLEG00000012997) TUBE1 (ENSNLEG00000012976) #25 CCN6 (ENSNLEG00000012965) #26 FYN (ENSNLEG00000012937) #27 TRAF3IP2 (ENSNLEG00000012927) REV3L (ENSNLEG00000012880) #29 MFSD4B (ENSNLEG00000034822) #30 SLC16A10 (ENSNLEG00000012864) #31 RPF2 (ENSNLEG00000027819) #32 GTF3C6 (ENSNLEG00000012846) #33 AMD1 (ENSNLEG00000012818) #34 ENSNLEG00000035438 ENSNLEG00000036089 Hominidae ANCESTRAL SPECIES 5 ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00390000009168.gb #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00910000148903 ENSGT00940000154317.a.b ENSGT00940000155676.r #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00910000147633 ENSGT00390000017996.b ENSGT00940000155723.a #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00940000155416.a.b.e.b ENSGT00390000007279.c.a #32 ENSGT00390000000510.e #33 Orangutan MODERN SPECIES 19 RSPH4A (ENSPPYG00000016954) RWDD1 (ENSPPYG00000016953) #13 CALHM4 (ENSPPYG00000016952) ##16 CALHM5 (ENSPPYG00000016951) ##16 TRAPPC3L (ENSPPYG00000016950) #15 CALHM6 (ENSPPYG00000016949) #16 DSE (ENSPPYG00000016948) #17 TSPYL1 (ENSPPYG00000035346) ENSPPYG00000035461 TSPYL4 (ENSPPYG00000040233) ENSPPYG00000035177 COL10A1 (ENSPPYG00000016944) NT5DC1 (ENSPPYG00000016943) #18 FRK (ENSPPYG00000016942) #20 HS3ST5 (ENSPPYG00000039787) #21 HDAC2 (ENSPPYG00000016940) #22 ENSPPYG00000016939 MARCKS (ENSPPYG00000035269) #23 ENSPPYG00000016937 RFPL4B (ENSPPYG00000016936) ENSPPYG00000040581 LAMA4 (ENSPPYG00000016934) #24 FAM229B (ENSPPYG00000036121) TUBE1 (ENSPPYG00000016932) #25 CCN6 (ENSPPYG00000016931) #26 FYN (ENSPPYG00000016930) #27 TRAF3IP2 (ENSPPYG00000016929) REV3L (ENSPPYG00000016927) #29 MFSD4B (ENSPPYG00000037175) #30 SLC16A10 (ENSPPYG00000016926) #31 RPF2 (ENSPPYG00000030068) #32 Homo/Pan/Gorilla group ANCESTRAL SPECIES 4 ENSGT00500000044869.a.a ENSGT00390000009168.gb #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00910000148903 ENSGT00940000154317.a.b ENSGT00940000155676.r #18 ENSGT00390000013354.d.a.a.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000154281.m.b.a.a.a.a ENSGT00910000148685 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00910000147633 ENSGT00390000017996.b ENSGT00940000155723.a #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00940000155416.a.b.e.b Gorilla MODERN SPECIES 19 RWDD1 (ENSGGOG00000026889) #13 CALHM4 (ENSGGOG00000017144) ##16 CALHM5 (ENSGGOG00000039336) ##16 TRAPPC3L (ENSGGOG00000036719) #15 CALHM6 (ENSGGOG00000001375) #16 DSE (ENSGGOG00000026746) #17 TSPYL1 (ENSGGOG00000016740) ENSGGOG00000024360 TSPYL4 (ENSGGOG00000025875) ENSGGOG00000037308 COL10A1 (ENSGGOG00000023907) NT5DC1 (ENSGGOG00000007465) #18 ENSGGOG00000039649 FRK (ENSGGOG00000034876) #20 HS3ST5 (ENSGGOG00000001108) #21 HDAC2 (ENSGGOG00000005428) #22 ENSGGOG00000006107 ENSGGOG00000037075 ENSGGOG00000037491 LAMA4 (ENSGGOG00000015003) #24 FAM229B (ENSGGOG00000014994) TUBE1 (ENSGGOG00000004898) #25 CCN6 (ENSGGOG00000004894) #26 FYN (ENSGGOG00000008065) #27 TRAF3IP2 (ENSGGOG00000026037) REV3L (ENSGGOG00000008128) #29 MFSD4B (ENSGGOG00000008827) #30 SLC16A10 (ENSGGOG00000011950) #31 ENSGGOG00000037631 RPF2 (ENSGGOG00000001469) #32 GTF3C6 (ENSGGOG00000010681) #33 Homo/Pan group ANCESTRAL SPECIES 5 ENSGT00500000044869.a.a ENSGT00390000009168.gb #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00910000148903 ENSGT00940000154317.a.b ENSGT00940000155676.r #18 ENSGT00390000013354.d.a.a.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000154281.m.b.a.a.a.a ENSGT00910000148685 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00910000147633 ENSGT00390000017996.b ENSGT00940000155723.a #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00940000155416.a.b.e.b Human MODERN SPECIES 18 ZUP1 (ENSG00000153975) RSPH4A (ENSG00000111834) RWDD1 (ENSG00000111832) #13 CALHM4 (ENSG00000164451) ##16 CALHM5 (ENSG00000178033) ##16 TRAPPC3L (ENSG00000173626) #15 CALHM6 (ENSG00000188820) #16 ENSG00000285446 TSPYL1 (ENSG00000189241) DSE (ENSG00000111817) #17 TSPYL4 (ENSG00000187189) COL10A1 (ENSG00000123500) NT5DC1 (ENSG00000178425) #18 FRK (ENSG00000111816) #20 HS3ST5 (ENSG00000249853) #21 HDAC2 (ENSG00000196591) #22 MARCKS (ENSG00000277443) #23 RFPL4B (ENSG00000251258) ENSG00000281613 LAMA4 (ENSG00000112769) #24 FAM229B (ENSG00000203778) TUBE1 (ENSG00000074935) #25 CCN6 (ENSG00000112761) #26 FYN (ENSG00000010810) #27 TRAF3IP2 (ENSG00000056972) REV3L (ENSG00000009413) #29 MFSD4B (ENSG00000173214) #30 SLC16A10 (ENSG00000112394) #31 RPF2 (ENSG00000197498) #32 GTF3C6 (ENSG00000155115) #33 AMD1 (ENSG00000123505) #34 Pan ANCESTRAL SPECIES 5 ENSGT00500000044869.a.a ENSGT00390000009168.gb #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00910000148903 ENSGT00940000154317.a.b ENSGT00940000155676.r #18 ENSGT00390000013354.d.a.a.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000154281.m.b.a.a.a.a ENSGT00910000148685 ENSGT00940000159970 #24 ENSGT00910000147633 ENSGT00390000017996.b ENSGT00940000155723.a #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00940000155416.a.b.e.b ENSGT00390000007279.c.a #32 Chimpanzee MODERN SPECIES 19 CALHM4 (ENSPTRG00000018532) ##16 CALHM5 (ENSPTRG00000048761) ##16 CALHM6 (ENSPTRG00000018530) #16 TRAPPC3L (ENSPTRG00000050736) #15 DSE (ENSPTRG00000018529) #17 TSPYL1 (ENSPTRG00000018528) ENSPTRG00000051033 TSPYL4 (ENSPTRG00000023905) ENSPTRG00000048668 COL10A1 (ENSPTRG00000018524) NT5DC1 (ENSPTRG00000018523) #18 ENSPTRG00000045932 FRK (ENSPTRG00000018521) #20 ENSPTRG00000051719 HS3ST5 (ENSPTRG00000018520) #21 HDAC2 (ENSPTRG00000018519) #22 MARCKS (ENSPTRG00000018517) #23 ENSPTRG00000049984 ENSPTRG00000045234 ENSPTRG00000047043 LAMA4 (ENSPTRG00000018514) #24 FAM229B (ENSPTRG00000029439) TUBE1 (ENSPTRG00000018513) #25 CCN6 (ENSPTRG00000018512) #26 FYN (ENSPTRG00000018511) #27 TRAF3IP2 (ENSPTRG00000018510) REV3L (ENSPTRG00000018508) #29 MFSD4B (ENSPTRG00000018507) #30 SLC16A10 (ENSPTRG00000018506) #31 ENSPTRG00000044359 RPF2 (ENSPTRG00000018503) #32 Bonobo MODERN SPECIES 19 ENSPPAG00000019471 ##16 CALHM5 (ENSPPAG00000039792) ##16 TRAPPC3L (ENSPPAG00000043671) #15 CALHM6 (ENSPPAG00000040382) #16 DSE (ENSPPAG00000039304) #17 TSPYL1 (ENSPPAG00000010073) ENSPPAG00000037203 TSPYL4 (ENSPPAG00000025665) ENSPPAG00000034902 #18 COL10A1 (ENSPPAG00000029466) ENSPPAG00000008350 #18 ENSPPAG00000009764 FRK (ENSPPAG00000037662) #20 ENSPPAG00000037500 HS3ST5 (ENSPPAG00000026905) #21 HDAC2 (ENSPPAG00000033144) #22 ENSPPAG00000043260 ENSPPAG00000007868 ENSPPAG00000030107 ENSPPAG00000019315 LAMA4 (ENSPPAG00000039482) #24 FAM229B (ENSPPAG00000035105) TUBE1 (ENSPPAG00000027400) #25 CCN6 (ENSPPAG00000043528) #26 FYN (ENSPPAG00000035740) #27 TRAF3IP2 (ENSPPAG00000029309) REV3L (ENSPPAG00000034775) #29 MFSD4B (ENSPPAG00000018914) #30 SLC16A10 (ENSPPAG00000036827) #31 ENSPPAG00000030951 RPF2 (ENSPPAG00000035622) #32 Platyrrhini ANCESTRAL SPECIES 2 ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00390000009168.eb #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000155676.q #18 ENSGT00940000154317.a.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00910000147939 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00390000000970.b.n.a.b ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723.a #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00940000155416.a.b.e.b ENSGT00390000007279.c.b.b.b #32 ENSGT00390000000510 #33 Mas night monkey MODERN SPECIES 1107 RSPH4A (ENSANAG00000020519) RWDD1 (ENSANAG00000030086) #13 CALHM4 (ENSANAG00000022923) ##16 TRAPPC3L (ENSANAG00000026394) #15 ENSANAG00000030183 CALHM5 (ENSANAG00000001421) ##16 CALHM6 (ENSANAG00000032722) #16 DSE (ENSANAG00000038310) #17 ENSANAG00000036796 TSPYL1 (ENSANAG00000022346) ENSANAG00000031391 #18 COL10A1 (ENSANAG00000028479) FRK (ENSANAG00000035872) #20 HS3ST5 (ENSANAG00000026473) #21 ENSANAG00000018971 HDAC2 (ENSANAG00000034693) #22 ENSANAG00000004036 MARCKS (ENSANAG00000023603) #23 ENSANAG00000018810 Cebidae ANCESTRAL SPECIES 5 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00390000009168.eb #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000155676.q #18 ENSGT00940000154317.a.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723.a #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00940000155416.a.b.e.b ENSGT00390000007279.c.b.b.b #32 ENSGT00390000000510 #33 ENSGT00390000011776.bb.b #34 ENSGT00390000007918.s.b Marmoset MODERN SPECIES 16 ZUP1 (ENSCJAG00000004437) RSPH4A (ENSCJAG00000004455) ENSCJAG00000004474 #13 CALHM4 (ENSCJAG00000004499) ##16 CALHM5 (ENSCJAG00000059277) ##16 TRAPPC3L (ENSCJAG00000004513) #15 CALHM6 (ENSCJAG00000004524) #16 DSE (ENSCJAG00000004530) #17 TSPYL1 (ENSCJAG00000040079) COL10A1 (ENSCJAG00000004589) ENSCJAG00000047367 #18 TSPYL4 (ENSCJAG00000034803) FRK (ENSCJAG00000004595) #20 ENSCJAG00000067023 HS3ST5 (ENSCJAG00000086455) #21 HDAC2 (ENSCJAG00000004635) #22 MARCKS (ENSCJAG00000063272) #23 ENSCJAG00000050876 ENSCJAG00000071609 LAMA4 (ENSCJAG00000004703) #24 FAM229B (ENSCJAG00000086953) TUBE1 (ENSCJAG00000004829) #25 CCN6 (ENSCJAG00000004862) #26 FYN (ENSCJAG00000004878) #27 TRAF3IP2 (ENSCJAG00000004951) ENSCJAG00000084581 REV3L (ENSCJAG00000005032) #29 ENSCJAG00000083633 #30 ENSCJAG00000059115 ENSCJAG00000083270 SLC16A10 (ENSCJAG00000005204) #31 Cebidae_a ANCESTRAL SPECIES 26 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00390000009168.eb #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000170327 ENSGT00940000155676.q #18 ENSGT00940000154317.a.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 Capuchin MODERN SPECIES 69 MS4A15 (ENSCCAG00000034577) MS4A10 (ENSCCAG00000023963) CCDC86 (ENSCCAG00000035527) PRPF19 (ENSCCAG00000025839) TMEM109 (ENSCCAG00000037515) TMEM132A (ENSCCAG00000028627) SLC15A3 (ENSCCAG00000029025) CD6 (ENSCCAG00000031326) HS3ST5 (ENSCCAG00000032286) #21 HDAC2 (ENSCCAG00000035694) #22 MARCKS (ENSCCAG00000033586) #23 ENSCCAG00000037100 SRP54 (ENSCCAG00000024179) FAM177A1 (ENSCCAG00000028509) ENSCCAG00000023889 PRORP (ENSCCAG00000000034) ENSCCAG00000034091 PSMA6 (ENSCCAG00000027932) ENSCCAG00000036741 NFKBIA (ENSCCAG00000034635) RALGAPA1 (ENSCCAG00000017045) BRMS1L (ENSCCAG00000034637) ENSCCAG00000031547 ENSCCAG00000026004 MBIP (ENSCCAG00000036247) Bolivian squirrel monkey DUPLICATION Bolivian squirrel monkey MODERN SPECIES 80 MAP4K5 (ENSSBOG00000033531) CDKL1 (ENSSBOG00000023817) DMAC2L (ENSSBOG00000004361) L2HGDH (ENSSBOG00000034119) SOS2 (ENSSBOG00000027880) VCPKMT (ENSSBOG00000027755) ARF6 (ENSSBOG00000004103) NEMF (ENSSBOG00000035900) KLHDC2 (ENSSBOG00000009647) KLHDC1 (ENSSBOG00000018788) POLE2 (ENSSBOG00000033545) DNAAF2 (ENSSBOG00000033917) RPL36AL (ENSSBOG00000018012) LRR1 (ENSSBOG00000034749) ENSSBOG00000029046 ENSSBOG00000034651 #22 ENSSBOG00000022302 ENSSBOG00000029350 MDGA2 (ENSSBOG00000033263) RPL10L (ENSSBOG00000018952) ENSSBOG00000034100 MIS18BP1 (ENSSBOG00000025159) FANCM (ENSSBOG00000030882) FKBP3 (ENSSBOG00000033978) PRPF39 (ENSSBOG00000029641) TOGARAM1 (ENSSBOG00000023110) KLHL28 (ENSSBOG00000026587) C14orf28 (ENSSBOG00000022243) ENSSBOG00000019589 FSCB (ENSSBOG00000023329) ENSSBOG00000002303 Bolivian squirrel monkey MODERN SPECIES 145 ZUP1 (ENSSBOG00000023075) RSPH4A (ENSSBOG00000027685) RWDD1 (ENSSBOG00000029590) #13 CALHM4 (ENSSBOG00000006032) ##16 TRAPPC3L (ENSSBOG00000010873) #15 CALHM5 (ENSSBOG00000014712) ##16 CALHM6 (ENSSBOG00000018753) #16 DSE (ENSSBOG00000019590) #17 ENSSBOG00000020332 ENSSBOG00000020743 ENSSBOG00000022050 #18 COL10A1 (ENSSBOG00000022558) FRK (ENSSBOG00000024353) #20 ENSSBOG00000025026 HS3ST5 (ENSSBOG00000025511) #21 ENSSBOG00000026123 #22 ENSSBOG00000036394 ENSSBOG00000027531 ENSSBOG00000027906 Strepsirrhini ANCESTRAL SPECIES 7 ENSGT00500000044869.a.a ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776.ab #34 ENSGT00940000158213 #36 Bushbaby MODERN SPECIES 117 ENSOGAG00000030595 #11 ENSOGAG00000025916 #11 RWDD1 (ENSOGAG00000014683) #13 CALHM4 (ENSOGAG00000014682) ##16 CALHM5 (ENSOGAG00000014679) ##16 TRAPPC3L (ENSOGAG00000014677) #15 CALHM6 (ENSOGAG00000032372) #16 DSE (ENSOGAG00000001191) #17 ENSOGAG00000025070 TSPYL1 (ENSOGAG00000001189) TSPYL4 (ENSOGAG00000031495) COL10A1 (ENSOGAG00000024717) NT5DC1 (ENSOGAG00000009142) #18 FRK (ENSOGAG00000009140) #20 HS3ST5 (ENSOGAG00000011023) #21 HDAC2 (ENSOGAG00000011016) #22 ENSOGAG00000028073 ENSOGAG00000025253 ENSOGAG00000031703 LAMA4 (ENSOGAG00000011205) #24 ENSOGAG00000011203 ENSOGAG00000033832 FAM229B (ENSOGAG00000025096) TUBE1 (ENSOGAG00000015679) #25 CCN6 (ENSOGAG00000015676) #26 FYN (ENSOGAG00000003928) #27 TRAF3IP2 (ENSOGAG00000003926) ENSOGAG00000027873 #29 ENSOGAG00000029527 #30 SLC16A10 (ENSOGAG00000003869) #31 ENSOGAG00000024994 #31 Lemuriformes ANCESTRAL SPECIES 3 ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944.a.a ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776.ab #34 ENSGT00940000158213 #36 Mouse lemur MODERN SPECIES 28 GLYATL3 (ENSMICG00000002636) CENPQ (ENSMICG00000042405) MMUT (ENSMICG00000008076) ENSMICG00000032805 #11 ENSMICG00000036368 #13 CALHM4 (ENSMICG00000008123) ##16 TRAPPC3L (ENSMICG00000008115) #15 CALHM5 (ENSMICG00000008119) ##16 CALHM6 (ENSMICG00000032074) #16 DSE (ENSMICG00000008111) #17 TSPYL1 (ENSMICG00000044487) NT5DC1 (ENSMICG00000003606) #18 ENSMICG00000046212 #19 FRK (ENSMICG00000003603) #20 HS3ST5 (ENSMICG00000027940) #21 HDAC2 (ENSMICG00000000261) #22 MARCKS (ENSMICG00000026883) #23 LAMA4 (ENSMICG00000008751) #24 FAM229B (ENSMICG00000043291) TUBE1 (ENSMICG00000047219) #25 CCN6 (ENSMICG00000008735) #26 FYN (ENSMICG00000008716) #27 ENSMICG00000042685 ENSMICG00000008708 REV3L (ENSMICG00000030163) #29 MFSD4B (ENSMICG00000008655) #30 SLC16A10 (ENSMICG00000030833) #31 ENSMICG00000034776 ENSMICG00000032086 #32 ENSMICG00000031615 #33 AMD1 (ENSMICG00000005491) #34 Lemuriformes_a ANCESTRAL SPECIES 63 ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944.a.a ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776.ab #34 ENSGT00940000158213 #36 Greater bamboo lemur DUPLICATION Greater bamboo lemur MODERN SPECIES 117 ENSPSMG00000025223 ENSPSMG00000025216 #11 RWDD1 (ENSPSMG00000025211) #13 CALHM4 (ENSPSMG00000025205) ##16 CALHM5 (ENSPSMG00000025204) ##16 TRAPPC3L (ENSPSMG00000025203) #15 CALHM6 (ENSPSMG00000025201) #16 DSE (ENSPSMG00000025197) #17 ENSPSMG00000025178 ENSPSMG00000025176 TSPYL4 (ENSPSMG00000025171) ENSPSMG00000025170 #19 NT5DC1 (ENSPSMG00000025168) #18 FRK (ENSPSMG00000025161) #20 HS3ST5 (ENSPSMG00000025147) #21 HDAC2 (ENSPSMG00000025136) #22 ENSPSMG00000025097 MARCKS (ENSPSMG00000025094) #23 ENSPSMG00000025088 LAMA4 (ENSPSMG00000025055) #24 FAM229B (ENSPSMG00000025004) TUBE1 (ENSPSMG00000025000) #25 CCN6 (ENSPSMG00000024981) #26 FYN (ENSPSMG00000024962) #27 TRAF3IP2 (ENSPSMG00000024916) REV3L (ENSPSMG00000024900) #29 MFSD4B (ENSPSMG00000024882) #30 SLC16A10 (ENSPSMG00000024879) #31 RPF2 (ENSPSMG00000024867) #32 GTF3C6 (ENSPSMG00000024856) #33 ENSPSMG00000024854 Greater bamboo lemur MODERN SPECIES 566 ENSPSMG00000000059 ENSPSMG00000000065 #22 ENSPSMG00000000069 COP1 (ENSPSMG00000000323) ENSPSMG00000000383 ENSPSMG00000000384 RALGPS2 (ENSPSMG00000000444) ANGPTL1 (ENSPSMG00000000473) FAM20B (ENSPSMG00000000476) TOR3A (ENSPSMG00000000484) ABL2 (ENSPSMG00000000635) Euarchontoglires_A ANCESTRAL SPECIES 6 ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00960000188119 ENSGT00940000163953 #19 ENSGT00940000155676 #18 ENSGT00940000154317.a.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000164609 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 Tree shrew MODERN SPECIES 4907 HS3ST5 (ENSTBEG00000015866) #21 HDAC2 (ENSTBEG00000015133) #22 Glires ANCESTRAL SPECIES 5 ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00960000188119 ENSGT00940000163953 #19 ENSGT00940000155676 #18 ENSGT00940000154317.a.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000164609 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 Lagomorpha ANCESTRAL SPECIES 108 ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000166162 ENSGT00940000162991 ENSGT00960000188119 ENSGT00940000163953 #19 ENSGT00940000154317.a.b ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 Pika MODERN SPECIES 4328 HDAC2 (ENSOPRG00000003019) #22 Rabbit MODERN SPECIES 3 CALHM6 (ENSOCUG00000029266) #16 DSE (ENSOCUG00000007344) #17 ENSOCUG00000032572 ENSOCUG00000015797 TSPYL4 (ENSOCUG00000016118) ENSOCUG00000022880 ENSOCUG00000001188 #19 NT5DC1 (ENSOCUG00000001184) #18 FRK (ENSOCUG00000001181) #20 ENSOCUG00000037887 ENSOCUG00000032491 ENSOCUG00000031905 ENSOCUG00000024678 HS3ST5 (ENSOCUG00000002744) #21 ENSOCUG00000036084 HDAC2 (ENSOCUG00000000598) #22 MARCKS (ENSOCUG00000007028) #23 ENSOCUG00000013336 ENSOCUG00000022352 ENSOCUG00000022721 ENSOCUG00000036437 ENSOCUG00000029640 ENSOCUG00000032378 LAMA4 (ENSOCUG00000009655) #24 FAM229B (ENSOCUG00000009652) TUBE1 (ENSOCUG00000009644) #25 CCN6 (ENSOCUG00000009639) #26 ENSOCUG00000039561 FYN (ENSOCUG00000015784) #27 TRAF3IP2 (ENSOCUG00000006179) REV3L (ENSOCUG00000017034) #29 Rodentia ANCESTRAL SPECIES 6 ENSGT00500000044869.a.a ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000164609 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 Rodentia_B ANCESTRAL SPECIES 18 ENSGT00500000044869.a.a ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000163953 #19 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000164609 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 Myomorpha ANCESTRAL SPECIES 21 ENSGT00500000044869.a.a ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000163953 #19 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000164609 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 Muroidea ANCESTRAL SPECIES 22 ENSGT00500000044869.a.a ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000163953 #19 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000164609 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 Muroidea_A ANCESTRAL SPECIES 11 ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000163953 #19 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000164609 ENSGT00940000156226 #29 ENSGT00530000063320.B.s.b.a.a #30 ENSGT00530000063320.B.s.a #30 ENSGT00530000063320.B.s.b.a.b #30 ENSGT00530000063320.B.s.b.b.b #30 Murinae ANCESTRAL SPECIES 36 ENSGT00390000003880.b.b #15 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000163953 #19 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B.s.b.a.a #30 ENSGT00530000063320.B.s.b.b.a #30 ENSGT00530000063320.B.s.a #30 ENSGT00530000063320.B.s.b.a.b #30 ENSGT00530000063320.B.s.b.b.b #30 ENSGT00940000157966 #31 Mus ANCESTRAL SPECIES 15 ENSGT00940000156772 #11 ENSGT00500000044869.a.a ENSGT00390000008232 ENSGT00390000009168 #13 ENSGT00390000003880.b.b #15 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000163953 #19 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B.s.b.a.a #30 ENSGT00530000063320.B.s.b.b.a #30 ENSGT00530000063320.B.s.a #30 ENSGT00530000063320.B.s.b.a.b #30 ENSGT00530000063320.B.s.b.b.b #30 ENSGT00940000157966 #31 Mus_A ANCESTRAL SPECIES 11 ENSGT00940000156772.ab #11 ENSGT00500000044869.a.a ENSGT00390000008232 ENSGT00390000009168 #13 ENSGT00390000003880.b.b #15 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000163953 #19 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B.s.b.a.a #30 ENSGT00530000063320.B.s.b.b.a #30 ENSGT00530000063320.B.s.a #30 ENSGT00530000063320.B.s.b.a.b #30 ENSGT00530000063320.B.s.b.b.b #30 ENSGT00940000157966 #31 Mus_B ANCESTRAL SPECIES 10 ENSGT00940000156772.ab #11 ENSGT00500000044869.a.a ENSGT00390000008232 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000163953 #19 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B.t #30 ENSGT00530000063320.B.s.b.a.a #30 ENSGT00530000063320.B.s.b.b.a #30 ENSGT00530000063320.B.s.a #30 ENSGT00530000063320.B.s.b.a.b #30 ENSGT00530000063320.B.s.b.b.b #30 Mouse MODERN SPECIES 1 Rsph4a (ENSMUSG00000039552) Zup1 (ENSMUSG00000039531) Rwdd1 (ENSMUSG00000019782) #13 Trappc3l (ENSMUSG00000071340) #15 Calhm4 (ENSMUSG00000039508) ##16 Calhm5 (ENSMUSG00000049872) ##16 Calhm6 (ENSMUSG00000046031) #16 Dse (ENSMUSG00000039497) #17 Tspyl1 (ENSMUSG00000047514) Nt5dc1 (ENSMUSG00000039480) #18 Tspyl4 (ENSMUSG00000039485) Col10a1 (ENSMUSG00000039462) #19 Frk (ENSMUSG00000019779) #20 Amd2 (ENSMUSG00000063953) #34 Hs3st5 (ENSMUSG00000044499) #21 Hdac2 (ENSMUSG00000019777) #22 Marcks (ENSMUSG00000069662) #23 Rfpl4b (ENSMUSG00000094311) Lama4 (ENSMUSG00000019846) #24 Fam229b (ENSMUSG00000051736) Tube1 (ENSMUSG00000019845) #25 Ccn6 (ENSMUSG00000062074) #26 Fyn (ENSMUSG00000019843) #27 Traf3ip2 (ENSMUSG00000019842) Rev3l (ENSMUSG00000019841) #29 Mfsd4b4 (ENSMUSG00000096687) #30 Mfsd4b5 (ENSMUSG00000038528) #30 Mfsd4b1 (ENSMUSG00000038522) #30 Slc16a10 (ENSMUSG00000019838) #31 Rpf2 (ENSMUSG00000038510) #32 Gtf3c6 (ENSMUSG00000019837) #33 Mus_C ANCESTRAL SPECIES 7 ENSGT00940000156772.ab #11 ENSGT00500000044869.a.a ENSGT00390000008232 ENSGT00390000003880.b.b #15 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000163953 #19 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B.t #30 ENSGT00530000063320.B.s.b.b.a #30 ENSGT00530000063320.B.s.a #30 ENSGT00530000063320.B.s.b.a.b #30 ENSGT00530000063320.B.s.b.b.b #30 ENSGT00940000157966 #31 Steppe mouse MODERN SPECIES 3285 Hs3st5 (ENSMSIG00000004744) #21 ENSMSIG00000004725 ENSMSIG00000004711 ENSMSIG00000004708 Hdac2 (ENSMSIG00000004652) #22 Marcks (ENSMSIG00000004639) #23 ENSMSIG00000004632 ENSMSIG00000004536 spretus MODERN SPECIES 1 Rsph4a (MGP_SPRETEiJ_G0016033) Zup1 (MGP_SPRETEiJ_G0016034) MGP_SPRETEiJ_G0016035 Rwdd1 (MGP_SPRETEiJ_G0016036) #13 Trappc3l (MGP_SPRETEiJ_G0016037) #15 Calhm4 (MGP_SPRETEiJ_G0016038) ##16 Calhm5 (MGP_SPRETEiJ_G0016039) ##16 Calhm6 (MGP_SPRETEiJ_G0016040) #16 Dse (MGP_SPRETEiJ_G0016041) #17 Tspyl1 (MGP_SPRETEiJ_G0016042) Tspyl4 (MGP_SPRETEiJ_G0016043) Nt5dc1 (MGP_SPRETEiJ_G0016044) #18 Col10a1 (MGP_SPRETEiJ_G0016045) #19 Frk (MGP_SPRETEiJ_G0016046) #20 Hs3st5 (MGP_SPRETEiJ_G0016047) #21 Hdac2 (MGP_SPRETEiJ_G0016048) #22 Marcks (MGP_SPRETEiJ_G0016049) #23 Rfpl4b (MGP_SPRETEiJ_G0016050) Lama4 (MGP_SPRETEiJ_G0016051) #24 Fam229b (MGP_SPRETEiJ_G0016052) Tube1 (MGP_SPRETEiJ_G0016053) #25 Ccn6 (MGP_SPRETEiJ_G0016054) #26 Fyn (MGP_SPRETEiJ_G0016055) #27 Traf3ip2 (MGP_SPRETEiJ_G0016056) Rev3l (MGP_SPRETEiJ_G0016057) #29 MGP_SPRETEiJ_G0016058 #30 MGP_SPRETEiJ_G0016059 #30 MGP_SPRETEiJ_G0016060 #30 Mfsd4b1 (MGP_SPRETEiJ_G0016061) #30 Slc16a10 (MGP_SPRETEiJ_G0016062) #31 Rpf2 (MGP_SPRETEiJ_G0016063) #32 Ryukyu mouse MODERN SPECIES 1 Rsph4a (MGP_CAROLIEiJ_G0015224) Zup1 (MGP_CAROLIEiJ_G0015225) MGP_CAROLIEiJ_G0015226 Rwdd1 (MGP_CAROLIEiJ_G0015227) #13 Trappc3l (MGP_CAROLIEiJ_G0015228) #15 Calhm4 (MGP_CAROLIEiJ_G0015229) ##16 Calhm5 (MGP_CAROLIEiJ_G0015230) ##16 Calhm6 (MGP_CAROLIEiJ_G0015231) #16 Dse (MGP_CAROLIEiJ_G0015232) #17 Tspyl1 (MGP_CAROLIEiJ_G0015233) Nt5dc1 (MGP_CAROLIEiJ_G0015234) #18 Tspyl4 (MGP_CAROLIEiJ_G0015235) Col10a1 (MGP_CAROLIEiJ_G0015236) #19 Frk (MGP_CAROLIEiJ_G0015237) #20 Hs3st5 (MGP_CAROLIEiJ_G0015238) #21 Hdac2 (MGP_CAROLIEiJ_G0015239) #22 Marcks (MGP_CAROLIEiJ_G0015240) #23 Rfpl4b (MGP_CAROLIEiJ_G0015241) Lama4 (MGP_CAROLIEiJ_G0015242) #24 Fam229b (MGP_CAROLIEiJ_G0015243) Tube1 (MGP_CAROLIEiJ_G0015244) #25 Ccn6 (MGP_CAROLIEiJ_G0015245) #26 Fyn (MGP_CAROLIEiJ_G0015246) #27 Traf3ip2 (MGP_CAROLIEiJ_G0015247) Rev3l (MGP_CAROLIEiJ_G0015248) #29 Mfsd4b4 (MGP_CAROLIEiJ_G0015249) #30 MGP_CAROLIEiJ_G0015250 #30 MGP_CAROLIEiJ_G0015251 #30 Mfsd4b1 (MGP_CAROLIEiJ_G0015252) #30 Slc16a10 (MGP_CAROLIEiJ_G0015253) #31 Rpf2 (MGP_CAROLIEiJ_G0015254) #32 Shrew mouse MODERN SPECIES 22 Rsph4a (MGP_PahariEiJ_G0030641) Zup1 (MGP_PahariEiJ_G0030642) MGP_PahariEiJ_G0030643 Rwdd1 (MGP_PahariEiJ_G0030644) #13 Trappc3l (MGP_PahariEiJ_G0030645) #15 Calhm4 (MGP_PahariEiJ_G0030646) ##16 Calhm5 (MGP_PahariEiJ_G0030647) ##16 MGP_PahariEiJ_G0030648 #16 Dse (MGP_PahariEiJ_G0030649) #17 Tspyl1 (MGP_PahariEiJ_G0030650) Nt5dc1 (MGP_PahariEiJ_G0030651) #18 Tspyl4 (MGP_PahariEiJ_G0030652) Col10a1 (MGP_PahariEiJ_G0030653) #19 Frk (MGP_PahariEiJ_G0030654) #20 Hs3st5 (MGP_PahariEiJ_G0030655) #21 Hdac2 (MGP_PahariEiJ_G0030656) #22 Marcks (MGP_PahariEiJ_G0030657) #23 Rfpl4b (MGP_PahariEiJ_G0030658) Lama4 (MGP_PahariEiJ_G0030659) #24 Fam229b (MGP_PahariEiJ_G0030660) Tube1 (MGP_PahariEiJ_G0030661) #25 Ccn6 (MGP_PahariEiJ_G0030662) #26 Fyn (MGP_PahariEiJ_G0030663) #27 Traf3ip2 (MGP_PahariEiJ_G0030664) Rev3l (MGP_PahariEiJ_G0030665) #29 Mfsd4b4 (MGP_PahariEiJ_G0030666) #30 MGP_PahariEiJ_G0030667 #30 MGP_PahariEiJ_G0030668 #30 Mfsd4b1 (MGP_PahariEiJ_G0030669) #30 Slc16a10 (MGP_PahariEiJ_G0030670) #31 Rpf2 (MGP_PahariEiJ_G0030671) #32 Rat MODERN SPECIES 12 Hsf2 (ENSRNOG00000000808) Serinc1 (ENSRNOG00000029360) Pkib (ENSRNOG00000000811) Fabp7 (ENSRNOG00000000814) Smpdl3a (ENSRNOG00000000815) ENSRNOG00000068589 ENSRNOG00000065029 ENSRNOG00000067001 ENSRNOG00000069043 ENSRNOG00000063538 Tspyl4 (ENSRNOG00000000547) Nt5dc1 (ENSRNOG00000000546) #18 Col10a1 (ENSRNOG00000051399) #19 Frk (ENSRNOG00000000543) #20 Hs3st5 (ENSRNOG00000000605) #21 Hdac2 (ENSRNOG00000000604) #22 Marcks (ENSRNOG00000000579) #23 AABR07045321.1 (ENSRNOG00000033652) LOC120098890 (ENSRNOG00000032548) AABR07045341.1 (ENSRNOG00000058648) Lama4 (ENSRNOG00000000599) #24 Fam229b (ENSRNOG00000024918) Tube1 (ENSRNOG00000000598) #25 Ccn6 (ENSRNOG00000000597) #26 Fyn (ENSRNOG00000000596) #27 Traf3ip2 (ENSRNOG00000000595) Rev3l (ENSRNOG00000000593) #29 Mfsd4b1 (ENSRNOG00000024543) #30 ENSRNOG00000068471 Mfsd4b2 (ENSRNOG00000042918) #30 RGD1561777 (ENSRNOG00000050425) #30 Cricetidae ANCESTRAL SPECIES 11 ENSGT00500000044869.a.a ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000163953 #19 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000164609 ENSGT00940000156226 #29 ENSGT00530000063320.B.s.b.a.a #30 ENSGT00530000063320.B.s.a #30 ENSGT00530000063320.B.s.b.a.b #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 Cricetidae_B ANCESTRAL SPECIES 21 ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B.s.b.a.a #30 ENSGT00530000063320.B.s.a #30 ENSGT00530000063320.B.s.b.a.b #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 Prairie vole DUPLICATION Prairie vole MODERN SPECIES 358 Grik2 (ENSMOCG00000022205) ENSMOCG00000021945 ENSMOCG00000002869 #13 Calhm4 (ENSMOCG00000004418) ##16 Trappc3l (ENSMOCG00000011302) #15 Calhm5 (ENSMOCG00000011633) ##16 Calhm6 (ENSMOCG00000017769) #16 Dse (ENSMOCG00000021598) #17 Tspyl1 (ENSMOCG00000007884) Tspyl4 (ENSMOCG00000006852) Nt5dc1 (ENSMOCG00000011487) #18 ENSMOCG00000018965 Frk (ENSMOCG00000011544) #20 ENSMOCG00000021869 Hs3st5 (ENSMOCG00000006907) #21 ENSMOCG00000007938 #22 Marcks (ENSMOCG00000011957) #23 ENSMOCG00000014007 Lama4 (ENSMOCG00000007325) #24 Fam229b (ENSMOCG00000011348) Tube1 (ENSMOCG00000012627) #25 Ccn6 (ENSMOCG00000014379) #26 Fyn (ENSMOCG00000018772) #27 ENSMOCG00000009695 ENSMOCG00000014021 Rev3l (ENSMOCG00000013565) #29 Mfsd4b4 (ENSMOCG00000012902) #30 ENSMOCG00000012054 #30 ENSMOCG00000015459 #30 Mfsd4b5 (ENSMOCG00000014730) #30 ENSMOCG00000019835 #30 Prairie vole MODERN SPECIES 7 Grk3 (ENSMOCG00000022564) Myo18b (ENSMOCG00000021907) Sez6l (ENSMOCG00000006680) Asphd2 (ENSMOCG00000011219) Ccdc121rt3 (ENSMOCG00000008683) Hps4 (ENSMOCG00000018197) Srrd (ENSMOCG00000003066) Tfip11 (ENSMOCG00000021195) Tpst2 (ENSMOCG00000016650) Crybb1 (ENSMOCG00000015051) Cryba4 (ENSMOCG00000009912) ENSMOCG00000015032 Mn1 (ENSMOCG00000015025) ENSMOCG00000010532 Pitpnb (ENSMOCG00000020746) ENSMOCG00000007073 #22 Ttc28 (ENSMOCG00000011545) ENSMOCG00000009496 ENSMOCG00000012889 Ulk1 (ENSMOCG00000014550) Pus1 (ENSMOCG00000022311) Ep400 (ENSMOCG00000004444) ENSMOCG00000011638 ENSMOCG00000022696 ENSMOCG00000016423 Northern American deer mouse MODERN SPECIES 7 Rsph4a (ENSPEMG00000015392) ENSPEMG00000010482 #11 Rwdd1 (ENSPEMG00000000119) #13 Calhm4 (ENSPEMG00000017719) ##16 Calhm5 (ENSPEMG00000019478) ##16 Trappc3l (ENSPEMG00000019941) #15 Calhm6 (ENSPEMG00000019812) #16 Dse (ENSPEMG00000019781) #17 Tspyl1 (ENSPEMG00000019621) Tspyl4 (ENSPEMG00000031222) Col10a1 (ENSPEMG00000019392) #19 Nt5dc1 (ENSPEMG00000020069) #18 Frk (ENSPEMG00000027385) #20 ENSPEMG00000027759 Hs3st5 (ENSPEMG00000027903) #21 Hdac2 (ENSPEMG00000019358) #22 ENSPEMG00000014821 Lama4 (ENSPEMG00000019628) #24 Fam229b (ENSPEMG00000029065) Tube1 (ENSPEMG00000019866) #25 Ccn6 (ENSPEMG00000019642) #26 Fyn (ENSPEMG00000019599) #27 Traf3ip2 (ENSPEMG00000029352) Rev3l (ENSPEMG00000019856) #29 Mfsd4b4 (ENSPEMG00000019580) #30 ENSPEMG00000019725 #30 ENSPEMG00000019920 #30 Mfsd4b5 (ENSPEMG00000014064) #30 Mfsd4b1 (ENSPEMG00000019229) #30 Slc16a10 (ENSPEMG00000026594) #31 Rpf2 (ENSPEMG00000011413) #32 Cricetinae ANCESTRAL SPECIES 7 ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000163953 #19 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000164609 ENSGT00940000156226 #29 ENSGT00530000063320.B.s.b.a.a #30 ENSGT00530000063320.B.s.a #30 ENSGT00530000063320.B.s.b.a.b #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 Chinese hamster chok1gshd MODERN SPECIES 160 ENSCGRG00001022688 #11 ENSCGRG00001022958 Rwdd1 (ENSCGRG00001000262) #13 Calhm4 (ENSCGRG00001000585) ##16 Trappc3l (ENSCGRG00001001357) #15 Calhm5 (ENSCGRG00001015860) ##16 Calhm6 (ENSCGRG00001016166) #16 Dse (ENSCGRG00001016755) #17 Tspyl1 (ENSCGRG00001016055) Tspyl4 (ENSCGRG00001015452) Nt5dc1 (ENSCGRG00001019057) #18 Col10a1 (ENSCGRG00001011438) #19 Frk (ENSCGRG00001012098) #20 ENSCGRG00001014662 Hs3st5 (ENSCGRG00001015101) #21 Hdac2 (ENSCGRG00001016612) #22 Marcks (ENSCGRG00001020371) #23 Lama4 (ENSCGRG00001023009) #24 Fam229b (ENSCGRG00001012149) Tube1 (ENSCGRG00001012631) #25 Ccn6 (ENSCGRG00001011722) #26 ENSCGRG00001014335 ENSCGRG00001012299 Fyn (ENSCGRG00001013292) #27 Traf3ip2 (ENSCGRG00001022894) Rev3l (ENSCGRG00001006588) #29 Mfsd4b4 (ENSCGRG00001018700) #30 ENSCGRG00001019786 #30 ENSCGRG00001021041 #30 Mfsd4b5 (ENSCGRG00001023659) #30 ENSCGRG00001000675 #30 Golden Hamster MODERN SPECIES 655 Zup1 (ENSMAUG00000012807) Rsph4a (ENSMAUG00000009247) ENSMAUG00000009333 #11 Rwdd1 (ENSMAUG00000001504) #13 Calhm4 (ENSMAUG00000020546) ##16 Calhm5 (ENSMAUG00000014804) ##16 Trappc3l (ENSMAUG00000004214) #15 Calhm6 (ENSMAUG00000002308) #16 Dse (ENSMAUG00000020240) #17 Tspyl1 (ENSMAUG00000018330) Tspyl4 (ENSMAUG00000007306) Col10a1 (ENSMAUG00000021181) #19 Nt5dc1 (ENSMAUG00000018298) #18 Frk (ENSMAUG00000011561) #20 Hs3st5 (ENSMAUG00000011520) #21 Hdac2 (ENSMAUG00000020410) #22 ENSMAUG00000006781 Marcks (ENSMAUG00000014455) #23 Lama4 (ENSMAUG00000008791) #24 Fam229b (ENSMAUG00000019053) Tube1 (ENSMAUG00000008915) #25 Ccn6 (ENSMAUG00000021485) #26 Fyn (ENSMAUG00000008178) #27 ENSMAUG00000019138 ENSMAUG00000013437 Rev3l (ENSMAUG00000017887) #29 Mfsd4b4 (ENSMAUG00000016531) #30 ENSMAUG00000008367 #30 ENSMAUG00000003097 #30 Slc16a10 (ENSMAUG00000003728) #31 Rpf2 (ENSMAUG00000005049) #32 Upper Galilee mountains blind mole rat MODERN SPECIES 795 Hs3st5 (ENSNGAG00000014466) #21 ENSNGAG00000015146 Hdac2 (ENSNGAG00000020750) #22 Marcks (ENSNGAG00000001058) #23 Lesser Egyptian jerboa MODERN SPECIES 78 ENSJJAG00000020421 #13 Calhm4 (ENSJJAG00000015260) ##16 Calhm5 (ENSJJAG00000000846) ##16 Dse (ENSJJAG00000009728) #17 Tspyl1 (ENSJJAG00000004543) Tspyl4 (ENSJJAG00000003740) ENSJJAG00000021831 Frk (ENSJJAG00000012534) #20 ENSJJAG00000018330 Hs3st5 (ENSJJAG00000016015) #21 Hdac2 (ENSJJAG00000006043) #22 ENSJJAG00000024370 Lama4 (ENSJJAG00000015844) #24 Fyn (ENSJJAG00000019918) #27 ENSJJAG00000003050 Rev3l (ENSJJAG00000000424) #29 ENSJJAG00000024023 #30 ENSJJAG00000020576 #30 ENSJJAG00000017239 #30 ENSJJAG00000013598 #30 ENSJJAG00000001534 Slc16a10 (ENSJJAG00000020672) #31 Rpf2 (ENSJJAG00000009092) #32 Gtf3c6 (ENSJJAG00000011569) #33 ENSJJAG00000003127 #34 Cdk19 (ENSJJAG00000022381) #36 Kangaroo rat MODERN SPECIES 476 ENSDORG00000015949 Zup1 (ENSDORG00000003947) Rsph4a (ENSDORG00000003944) ENSDORG00000025806 #11 Rwdd1 (ENSDORG00000012373) #13 Calhm4 (ENSDORG00000012772) ##16 Trappc3l (ENSDORG00000012769) #15 Calhm5 (ENSDORG00000012771) ##16 Calhm6 (ENSDORG00000012765) #16 Dse (ENSDORG00000012764) #17 Tspyl4 (ENSDORG00000027297) Nt5dc1 (ENSDORG00000010307) #18 ENSDORG00000010312 Frk (ENSDORG00000000702) #20 Hs3st5 (ENSDORG00000028438) #21 Hdac2 (ENSDORG00000013317) #22 Lama4 (ENSDORG00000012032) #24 Fam229b (ENSDORG00000012031) ENSDORG00000012029 #25 Ccn6 (ENSDORG00000012026) #26 Fyn (ENSDORG00000016706) #27 ENSDORG00000010688 Rev3l (ENSDORG00000000703) #29 ENSDORG00000006922 #30 ENSDORG00000002516 #30 ENSDORG00000024120 #30 ENSDORG00000002491 #30 Rodentia_A ANCESTRAL SPECIES 8 ENSGT00500000044869.a.a ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT01050000247848 ENSGT00900000143015 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000164609 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 Hystricomorpha ANCESTRAL SPECIES 41 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000154317.a.b ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B.u #30 ENSGT00940000163501 ENSGT00530000063320.B.v #30 ENSGT00940000157966 #31 ENSGT00390000007279.g.b #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 Hystricomorpha_a ANCESTRAL SPECIES 46 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000154317.a.b ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00900000143015 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B.u.c #30 ENSGT00940000163501 ENSGT00530000063320.B.u.d #30 ENSGT00530000063320.B.v #30 ENSGT00940000157966 #31 ENSGT00390000007279.g.b #32 ENSGT00390000000510 #33 Guinea pig MODERN SPECIES 58 WDR27 (ENSCPOG00000011113) THBS2 (ENSCPOG00000027034) SMOC2 (ENSCPOG00000008023) ENSCPOG00000004731 RWDD1 (ENSCPOG00000038110) #13 CALHM4 (ENSCPOG00000012855) ##16 TRAPPC3L (ENSCPOG00000012848) #15 CALHM5 (ENSCPOG00000036158) ##16 DSE (ENSCPOG00000003402) #17 ENSCPOG00000035087 TSPYL1 (ENSCPOG00000022929) NT5DC1 (ENSCPOG00000009411) #18 ENSCPOG00000009416 #19 FRK (ENSCPOG00000006954) #20 HS3ST5 (ENSCPOG00000031109) #21 HDAC2 (ENSCPOG00000014344) #22 LAMA4 (ENSCPOG00000006325) #24 FAM229B (ENSCPOG00000031930) TUBE1 (ENSCPOG00000004829) #25 CCN6 (ENSCPOG00000004828) #26 FYN (ENSCPOG00000012822) #27 TRAF3IP2 (ENSCPOG00000012814) REV3L (ENSCPOG00000024631) #29 ENSCPOG00000000094 #30 ENSCPOG00000040545 #30 ENSCPOG00000030023 #30 ETFBKMT (ENSCPOG00000003949) ENSCPOG00000001776 #30 ENSCPOG00000002796 #30 SLC16A10 (ENSCPOG00000002303) #31 RPF2 (ENSCPOG00000006797) #32 Hystricomorpha_b ANCESTRAL SPECIES 168 ENSGT00940000155725 #22 ENSGT00900000143015 Long-tailed chinchilla MODERN SPECIES 233 ENSCLAG00000000206 #13 CALHM4 (ENSCLAG00000000213) ##16 TRAPPC3L (ENSCLAG00000000221) #15 CALHM5 (ENSCLAG00000000210) ##16 DSE (ENSCLAG00000000219) #17 NT5DC1 (ENSCLAG00000000283) #18 ENSCLAG00000000565 #19 FRK (ENSCLAG00000000628) #20 HS3ST5 (ENSCLAG00000000666) #21 ENSCLAG00000000682 HDAC2 (ENSCLAG00000000749) #22 ENSCLAG00000000824 ENSCLAG00000017382 ENSCLAG00000000058 ENSCLAG00000000080 LAMA4 (ENSCLAG00000000130) #24 FAM229B (ENSCLAG00000000365) TUBE1 (ENSCLAG00000000067) #25 CCN6 (ENSCLAG00000000109) #26 Degu DUPLICATION Degu DUPLICATION Degu MODERN SPECIES 226 ENSODEG00000020167 PCDHAC2 (ENSODEG00000012473) PCDHB1 (ENSODEG00000019919) PCDHB2 (ENSODEG00000013246) ENSODEG00000012569 PCDHB4 (ENSODEG00000011616) ENSODEG00000012750 #22 ENSODEG00000011904 ENSODEG00000011435 ENSODEG00000012347 ENSODEG00000012003 PCDHB6 (ENSODEG00000011685) ENSODEG00000011819 PCDHB7 (ENSODEG00000014075) PCDHB13 (ENSODEG00000012740) ENSODEG00000012330 ENSODEG00000011147 ENSODEG00000011579 ENSODEG00000011345 PCDHB15 (ENSODEG00000013503) SLC25A2 (ENSODEG00000020131) ENSODEG00000014858 Degu MODERN SPECIES 50 PLEKHA6 (ENSODEG00000011957) PPP1R15B (ENSODEG00000014053) PIK3C2B (ENSODEG00000012433) MDM4 (ENSODEG00000013499) ENSODEG00000012222 MAN2A1 (ENSODEG00000012752) PJA2 (ENSODEG00000013325) FER (ENSODEG00000013121) ENSODEG00000013715 ENSODEG00000013610 ENSODEG00000012423 ENSODEG00000014212 EFNA5 (ENSODEG00000013673) ENSODEG00000019972 ENSODEG00000020022 ENSODEG00000012978 #22 NUDT12 (ENSODEG00000012673) ENSODEG00000013039 MACIR (ENSODEG00000013882) PPIP5K2 (ENSODEG00000012976) GIN1 (ENSODEG00000014540) PAM (ENSODEG00000014808) ENSODEG00000020256 ENSODEG00000012701 ST8SIA4 (ENSODEG00000012997) ENSODEG00000014055 CHD1 (ENSODEG00000013090) RGMB (ENSODEG00000013893) ENSODEG00000013445 ENSODEG00000012940 ENSODEG00000012676 Degu MODERN SPECIES 282 ENSODEG00000000872 HS3ST5 (ENSODEG00000000864) #21 ENSODEG00000000843 ENSODEG00000000828 #22 ENSODEG00000018672 ENSODEG00000000811 ENSODEG00000000794 ENSODEG00000000785 LAMA4 (ENSODEG00000000643) #24 ENSODEG00000000583 FAM229B (ENSODEG00000000204) Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES PDAP1 (ENSHGLG00000013857) ENSHGLG00000018123 PTCD1 (ENSHGLG00000017621) ENSHGLG00000017150 ENSHGLG00000006068 ENSHGLG00000006453 ZNF394 (ENSHGLG00000033544) ZKSCAN5 (ENSHGLG00000009175) ZNF655 (ENSHGLG00000005530) ENSHGLG00000040144 ENSHGLG00000033148 ENSHGLG00000038153 ENSHGLG00000041246 ENSHGLG00000000859 #20 HS3ST5 (ENSHGLG00000045242) #21 ENSHGLG00000001055 #22 ENSHGLG00000045785 ENSHGLG00000038613 ENSHGLG00000048576 ENSHGLG00000043829 ENSHGLG00000041812 ENSHGLG00000035533 ENSHGLG00000044152 #26 TUBE1 (ENSHGLG00000000329) #25 ENSHGLG00000038399 ENSHGLG00000002556 #30 ENSHGLG00000002017 ENSHGLG00000034717 ENSHGLG00000000862 #31 ENSHGLG00000032154 ENSHGLG00000033830 #14 Naked mole-rat female DUPLICATION Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 21 NECTIN2 (ENSHGLG00000034437) BCAM (ENSHGLG00000003389) CBLC (ENSHGLG00000008971) BCL3 (ENSHGLG00000007014) CEACAM16 (ENSHGLG00000006899) CEACAM19 (ENSHGLG00000046771) ENSHGLG00000032944 CEACAM20 (ENSHGLG00000004190) ZNF180 (ENSHGLG00000003979) ZNF112 (ENSHGLG00000003877) ZNF235 (ENSHGLG00000003657) ZNF227 (ENSHGLG00000003367) ZNF226 (ENSHGLG00000003200) ENSHGLG00000040906 ENSHGLG00000045489 ENSHGLG00000035984 #22 ENSHGLG00000039279 KCNN4 (ENSHGLG00000002945) SMG9 (ENSHGLG00000002912) PLAUR (ENSHGLG00000011117) CADM4 (ENSHGLG00000010737) ZNF576 (ENSHGLG00000042463) IRGQ (ENSHGLG00000043298) ENSHGLG00000009364 XRCC1 (ENSHGLG00000008346) ZNF575 (ENSHGLG00000048338) ETHE1 (ENSHGLG00000006665) PHLDB3 (ENSHGLG00000006219) LYPD3 (ENSHGLG00000002401) ENSHGLG00000049383 ENSHGLG00000002237 Naked mole-rat female MODERN SPECIES 4 ENSHGLG00000019528 PCDH15 (ENSHGLG00000007425) ENSHGLG00000050306 MBL2 (ENSHGLG00000003224) DKK1 (ENSHGLG00000003778) ENSHGLG00000007097 ENSHGLG00000021086 CSTF2T (ENSHGLG00000015478) ENSHGLG00000036537 ENSHGLG00000008955 ENSHGLG00000033052 ENSHGLG00000018465 ENSHGLG00000019589 ENSHGLG00000018994 ENSHGLG00000004068 ENSHGLG00000046147 #22 ENSHGLG00000018859 ENSHGLG00000047821 PAPSS2 (ENSHGLG00000018676) ENSHGLG00000032735 ATAD1 (ENSHGLG00000042263) ENSHGLG00000035387 ENSHGLG00000008649 RNLS (ENSHGLG00000044945) LIPF (ENSHGLG00000003846) LIPK (ENSHGLG00000044960) LIPN (ENSHGLG00000004609) LIPM (ENSHGLG00000006060) ANKRD22 (ENSHGLG00000012828) STAMBPL1 (ENSHGLG00000019158) ACTA2 (ENSHGLG00000002950) Naked mole-rat female MODERN SPECIES 11 JPH4 (ENSHGLG00000008636) ENSHGLG00000045761 DHRS2 (ENSHGLG00000005855) ENSHGLG00000006885 CARMIL3 (ENSHGLG00000004564) CPNE6 (ENSHGLG00000004060) NRL (ENSHGLG00000003953) PCK2 (ENSHGLG00000003721) ENSHGLG00000050121 DCAF11 (ENSHGLG00000003175) PSME1 (ENSHGLG00000003645) EMC9 (ENSHGLG00000035251) PSME2 (ENSHGLG00000003315) ENSHGLG00000002544 ENSHGLG00000047508 ENSHGLG00000044245 #22 ENSHGLG00000002003 ENSHGLG00000019819 ENSHGLG00000046330 ENSHGLG00000002133 ENSHGLG00000033338 ENSHGLG00000002249 SLC39A2 (ENSHGLG00000002511) NDRG2 (ENSHGLG00000003227) TPPP2 (ENSHGLG00000003260) RNASE13 (ENSHGLG00000020365) RNASE7 (ENSHGLG00000048768) ARHGEF40 (ENSHGLG00000003796) ZNF219 (ENSHGLG00000004299) TMEM253 (ENSHGLG00000004638) ENSHGLG00000034860 Sciuridae ANCESTRAL SPECIES 1 ENSGT00940000156772.x #11 ENSGT00940000156772.w #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000163953 #19 ENSGT00940000155676 #18 ENSGT00940000154317.a.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT01050000247848 ENSGT00900000143015 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000164609 ENSGT00940000156226 #29 ENSGT00530000063320.B.w.a #30 ENSGT00530000063320.B.w.b.a #30 ENSGT00530000063320.B.x.a #30 ENSGT00530000063320.B.x.b #30 Eurasian red squirrel MODERN SPECIES 16 ENSSVLG00005009556 #13 CALHM4 (ENSSVLG00005009602) ##16 TRAPPC3L (ENSSVLG00005009643) #15 CALHM5 (ENSSVLG00005009693) ##16 CALHM6 (ENSSVLG00005009719) #16 DSE (ENSSVLG00005009768) #17 TSPYL1 (ENSSVLG00005009835) TSPYL4 (ENSSVLG00005009852) NT5DC1 (ENSSVLG00005009872) #18 COL10A1 (ENSSVLG00005009901) FRK (ENSSVLG00005009937) #20 ENSSVLG00005010009 ENSSVLG00005010037 HS3ST5 (ENSSVLG00005010072) #21 ENSSVLG00005010101 HDAC2 (ENSSVLG00005010140) #22 ENSSVLG00005010204 MARCKS (ENSSVLG00005010232) #23 ENSSVLG00005010294 LAMA4 (ENSSVLG00005010349) #24 FAM229B (ENSSVLG00005010404) TUBE1 (ENSSVLG00005010438) #25 CCN6 (ENSSVLG00005010531) #26 FYN (ENSSVLG00005010663) #27 TRAF3IP2 (ENSSVLG00005010802) REV3L (ENSSVLG00005010947) #29 ENSSVLG00005011314 #30 ENSSVLG00005011341 ENSSVLG00005011383 #30 ENSSVLG00005011466 #30 ENSSVLG00005011735 #30 Marmotini ANCESTRAL SPECIES 11 ENSGT00940000156772.x #11 ENSGT00940000156772.w #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00900000143015.a ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000164609 ENSGT00940000156226 #29 ENSGT00530000063320.B.w.a #30 ENSGT00530000063320.B.w.b.a #30 ENSGT00530000063320.B.x.a #30 ENSGT00530000063320.B.x.b #30 ENSGT01100000267031 Alpin marmot DUPLICATION Alpin marmot MODERN SPECIES 9 SLC34A2 (ENSMMMG00000017344) ANAPC4 (ENSMMMG00000017319) ZCCHC4 (ENSMMMG00000017301) PI4K2B (ENSMMMG00000017289) SEPSECS (ENSMMMG00000017270) LGI2 (ENSMMMG00000017262) CCDC149 (ENSMMMG00000017248) DHX15 (ENSMMMG00000017227) ENSMMMG00000017220 PPARGC1A (ENSMMMG00000017190) GBA3 (ENSMMMG00000017174) ADGRA3 (ENSMMMG00000017146) KCNIP4 (ENSMMMG00000017078) PACRGL (ENSMMMG00000017055) SLIT2 (ENSMMMG00000016769) ENSMMMG00000016741 #22 ENSMMMG00000016736 ENSMMMG00000016717 NCAPG (ENSMMMG00000016692) ENSMMMG00000016689 DCAF16 (ENSMMMG00000016681) FAM184B (ENSMMMG00000016657) ENSMMMG00000016639 LAP3 (ENSMMMG00000016620) CLRN2 (ENSMMMG00000016613) QDPR (ENSMMMG00000016605) LDB2 (ENSMMMG00000016572) TAPT1 (ENSMMMG00000016512) PROM1 (ENSMMMG00000016334) FGFBP1 (ENSMMMG00000016328) CD38 (ENSMMMG00000016315) Alpin marmot MODERN SPECIES 2 ZUP1 (ENSMMMG00000015434) RSPH4A (ENSMMMG00000015424) ENSMMMG00000015402 #11 ENSMMMG00000015383 #11 ENSMMMG00000015375 #11 RWDD1 (ENSMMMG00000015368) #13 CALHM4 (ENSMMMG00000015364) ##16 CALHM5 (ENSMMMG00000015357) ##16 CALHM6 (ENSMMMG00000015349) #16 DSE (ENSMMMG00000015341) #17 TSPYL4 (ENSMMMG00000015326) ENSMMMG00000015321 #19 ENSMMMG00000015316 #18 FRK (ENSMMMG00000015306) #20 HS3ST5 (ENSMMMG00000015290) #21 HDAC2 (ENSMMMG00000015264) #22 ENSMMMG00000015261 LAMA4 (ENSMMMG00000015194) #24 FAM229B (ENSMMMG00000015179) TUBE1 (ENSMMMG00000015165) #25 CCN6 (ENSMMMG00000015161) #26 FYN (ENSMMMG00000014912) #27 TRAF3IP2 (ENSMMMG00000014896) ENSMMMG00000014893 REV3L (ENSMMMG00000014848) #29 ENSMMMG00000014825 #30 ENSMMMG00000014818 #30 ENSMMMG00000014808 #30 ENSMMMG00000014803 ENSMMMG00000014777 #30 ENSMMMG00000014760 #30 Marmotini_b ANCESTRAL SPECIES 33 ENSGT00390000004612 ENSGT00390000012556 ENSGT00390000010434.a ENSGT00390000007332 ENSGT00940000157294 ENSGT00390000015958 ENSGT00940000162224 ENSGT00940000155800.e ENSGT00900000143693 ENSGT00950000183137.b.a ENSGT00940000160460 ENSGT00940000157235 ENSGT00940000158985 ENSGT00940000159756 ENSGT00940000158402 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000162414 ENSGT00390000001577 ENSGT00390000012430 ENSGT00530000063669.a ENSGT00390000006192.t ENSGT00530000063255.B ENSGT00850000132319.a.a.b ENSGT00390000000470 ENSGT00390000005639.a.a ENSGT00960000191062 ENSGT00390000010628 ENSGT00530000063586.b ENSGT00940000154372.a.b ENSGT00390000017291.a Squirrel MODERN SPECIES 279 HS3ST5 (ENSSTOG00000025631) #21 HDAC2 (ENSSTOG00000012779) #22 ENSSTOG00000025807 ENSSTOG00000023880 LAMA4 (ENSSTOG00000005301) #24 FAM229B (ENSSTOG00000005296) ENSSTOG00000005276 #25 CCN6 (ENSSTOG00000005265) #26 FYN (ENSSTOG00000007382) #27 TRAF3IP2 (ENSSTOG00000031707) ENSSTOG00000005987 REV3L (ENSSTOG00000027348) #29 ENSSTOG00000019830 #30 Arctic ground squirrel DUPLICATION Arctic ground squirrel MODERN SPECIES 9 ANAPC4 (ENSUPAG00010018324) ZCCHC4 (ENSUPAG00010018312) PI4K2B (ENSUPAG00010018304) SEPSECS (ENSUPAG00010018289) LGI2 (ENSUPAG00010018269) CCDC149 (ENSUPAG00010018257) SOD3 (ENSUPAG00010018252) DHX15 (ENSUPAG00010018237) ENSUPAG00010018232 PPARGC1A (ENSUPAG00010018212) GBA3 (ENSUPAG00010018197) ADGRA3 (ENSUPAG00010018174) KCNIP4 (ENSUPAG00010017944) PACRGL (ENSUPAG00010017902) SLIT2 (ENSUPAG00010017541) ENSUPAG00010017517 #22 ENSUPAG00010017493 DCAF16 (ENSUPAG00010017485) NCAPG (ENSUPAG00010017444) FAM184B (ENSUPAG00010017393) ENSUPAG00010017366 LAP3 (ENSUPAG00010017358) CLRN2 (ENSUPAG00010017347) QDPR (ENSUPAG00010017321) LDB2 (ENSUPAG00010017297) ENSUPAG00010017287 TAPT1 (ENSUPAG00010017269) PROM1 (ENSUPAG00010017205) FGFBP1 (ENSUPAG00010017197) CD38 (ENSUPAG00010017184) BST1 (ENSUPAG00010017165) Arctic ground squirrel MODERN SPECIES 150 HS3ST5 (ENSUPAG00010023154) #21 HDAC2 (ENSUPAG00010023155) #22 MARCKS (ENSUPAG00010023156) #23 ENSUPAG00010023159 LAMA4 (ENSUPAG00010023162) #24 FAM229B (ENSUPAG00010023163) TUBE1 (ENSUPAG00010023165) #25 CCN6 (ENSUPAG00010023168) #26 FYN (ENSUPAG00010023172) #27 TRAF3IP2 (ENSUPAG00010023184) REV3L (ENSUPAG00010023185) #29 ENSUPAG00010023192 #30 ENSUPAG00010000016 #30 ENSUPAG00010000028 #30 ENSUPAG00010000078 ENSUPAG00010000102 #30 SLC16A10 (ENSUPAG00010000116) #31 Atlantogenata ANCESTRAL SPECIES 3 ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162821 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 Xenarthra ANCESTRAL SPECIES 1518 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 Armadillo MODERN SPECIES 600 HS3ST5 (ENSDNOG00000033227) #21 HDAC2 (ENSDNOG00000035453) #22 MARCKS (ENSDNOG00000049728) #23 ENSDNOG00000048051 Sloth MODERN SPECIES 7170 HDAC2 (ENSCHOG00000013160) #22 Afrotheria ANCESTRAL SPECIES 13 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 ENSGT00940000160723 #37 Afrotheria_a ANCESTRAL SPECIES 13 ENSGT00640000091497.b ENSGT01050000244950.a.a.b ENSGT00390000008232 ENSGT00500000044869.a.a ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT01030000234610.a.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000162991 ENSGT00940000154317.a.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00940000163194 ENSGT00940000159970 #24 ENSGT00390000017996.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000161944 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000000510 #33 ENSGT00390000011776 #34 ENSGT00940000158213 #36 ENSGT00940000160723 #37 Elephant MODERN SPECIES 1 RSPH4A (ENSLAFG00000003514) ENSLAFG00000028750 #11 ENSLAFG00000026707 #11 ENSLAFG00000008170 #13 CALHM4 (ENSLAFG00000027569) ##16 TRAPPC3L (ENSLAFG00000008487) #15 CALHM5 (ENSLAFG00000008490) ##16 ENSLAFG00000017416 #16 ENSLAFG00000012702 #16 DSE (ENSLAFG00000009134) #17 ENSLAFG00000027418 TSPYL4 (ENSLAFG00000010254) COL10A1 (ENSLAFG00000022123) FRK (ENSLAFG00000005589) #20 HS3ST5 (ENSLAFG00000010686) #21 HDAC2 (ENSLAFG00000005566) #22 RFPL4B (ENSLAFG00000021578) ENSLAFG00000029012 LAMA4 (ENSLAFG00000004076) #24 FAM229B (ENSLAFG00000030627) TUBE1 (ENSLAFG00000004073) #25 CCN6 (ENSLAFG00000004071) #26 FYN (ENSLAFG00000002604) #27 TRAF3IP2 (ENSLAFG00000004974) REV3L (ENSLAFG00000005929) #29 ENSLAFG00000015255 #30 SLC16A10 (ENSLAFG00000015252) #31 ENSLAFG00000026068 RPF2 (ENSLAFG00000018219) #32 GTF3C6 (ENSLAFG00000005026) #33 ENSLAFG00000013203 #34 Hyrax MODERN SPECIES 6777 HDAC2 (ENSPCAG00000008543) #22 Tenrec DUPLICATION Tenrec MODERN SPECIES 8039 ENSETEG00000008468 #22 Tenrec MODERN SPECIES 8649 ENSETEG00000007782 #22 Anura ANCESTRAL SPECIES 8 ENSGT00940000166171.b ENSGT00940000158416 ENSGT00640000091497.b ENSGT00390000008232 ENSGT00940000156772 #11 ENSGT00390000009168 #13 ENSGT01030000234610.b.b ##16 ENSGT00390000003880.b.b #15 ENSGT01030000234610.a.b ##16 ENSGT01030000234610.a.a #16 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000163953 #19 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000164855 #28 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 ENSGT00940000158213 #36 ENSGT00940000160723 #37 ENSGT00390000018635.c ENSGT00390000002881 Frog MODERN SPECIES 5 birc7 (ENSXETG00000015707) calhm4 (ENSXETG00000030384) ##16 trappc3l (ENSXETG00000031870) #15 calhm5 (ENSXETG00000044076) ##16 calhm6 (ENSXETG00000033644) #16 dse (ENSXETG00000032776) #17 nt5dc1 (ENSXETG00000034706) #18 col10a1 (ENSXETG00000033031) #19 frk (ENSXETG00000006166) #20 cfap206 (ENSXETG00000006172) ENSXETG00000044597 ENSXETG00000043493 ENSXETG00000042926 ENSXETG00000048366 hs3st5 (ENSXETG00000020230) #21 hdac2 (ENSXETG00000007339) #22 marcks (ENSXETG00000027751) #23 lama4 (ENSXETG00000007336) #24 ENSXETG00000049076 tube1 (ENSXETG00000011177) #25 ccn6 (ENSXETG00000040962) #26 fyn (ENSXETG00000021344) #27 traf3ip3 (ENSXETG00000027753) #28 rev3l (ENSXETG00000027754) #29 mfsd4b (ENSXETG00000021338) #30 slc16a10 (ENSXETG00000021337) #31 rpf2 (ENSXETG00000021335) #32 amd1 (ENSXETG00000034455) #34 cdk19 (ENSXETG00000021324) #36 slc22a16 (ENSXETG00000021318) #37 ddo (ENSXETG00000021315) Leishan spiny toad MODERN SPECIES 7 ENSLLEG00000015309 RWDD1 (ENSLLEG00000015539) #13 CALHM4 (ENSLLEG00000015712) ##16 TRAPPC3L (ENSLLEG00000015749) #15 CALHM5 (ENSLLEG00000015832) ##16 CALHM6 (ENSLLEG00000015877) #16 DSE (ENSLLEG00000015907) #17 NT5DC1 (ENSLLEG00000015951) #18 ENSLLEG00000016041 #19 FRK (ENSLLEG00000016095) #20 ENSLLEG00000016271 ENSLLEG00000016334 ENSLLEG00000016355 HS3ST5 (ENSLLEG00000016380) #21 ENSLLEG00000016423 HDAC2 (ENSLLEG00000016537) #22 ENSLLEG00000017275 ENSLLEG00000017300 MARCKS (ENSLLEG00000017344) #23 ENSLLEG00000017379 ENSLLEG00000017409 ENSLLEG00000017428 ENSLLEG00000017456 ENSLLEG00000017498 ENSLLEG00000017525 ENSLLEG00000017548 LAMA4 (ENSLLEG00000017595) #24 ENSLLEG00000018361 TUBE1 (ENSLLEG00000018467) #25 CCN6 (ENSLLEG00000018600) #26 FYN (ENSLLEG00000018687) #27 Actinopterygii ANCESTRAL SPECIES 27 ENSGT00940000157785 ENSGT01100000263543.c ENSGT00940000163438 ENSGT00940000160189 ENSGT00390000016054.a ENSGT00940000155095 ENSGT00390000002112 ENSGT00950000183028.a.a.b ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000154317.a.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419 #23 ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462 #27 ENSGT00940000164609 ENSGT00940000170463 ENSGT00940000160000 ENSGT00940000159402 ENSGT00940000164855 #28 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 Reedfish MODERN SPECIES 11 ENSECRG00000003692 ENSECRG00000003696 EPHA7 (ENSECRG00000003713) manea (ENSECRG00000003736) fut9a (ENSECRG00000003744) ufl1 (ENSECRG00000003751) fhl5 (ENSECRG00000003760) GPR63 (ENSECRG00000003767) NDUFAF4 (ENSECRG00000003771) dse (ENSECRG00000003776) #17 nt5dc1 (ENSECRG00000003803) #18 col10a1a (ENSECRG00000004051) ENSECRG00000004061 #18 FRK (ENSECRG00000004132) #20 HS3ST5 (ENSECRG00000004527) #21 HDAC2 (ENSECRG00000004542) #22 marcksa (ENSECRG00000004573) #23 LAMA4 (ENSECRG00000004788) #24 tube1 (ENSECRG00000005898) #25 ccn6 (ENSECRG00000005939) #26 fynb (ENSECRG00000006091) #27 ENSECRG00000006110 ENSECRG00000006164 #28 REV3L (ENSECRG00000006193) #29 mfsd4b (ENSECRG00000006286) #30 slc16a10 (ENSECRG00000006294) #31 CDK19 (ENSECRG00000006318) #36 ENSECRG00000006335 ddo (ENSECRG00000006386) slc22a16 (ENSECRG00000006579) #37 METTL24 (ENSECRG00000006585) Neopterygii ANCESTRAL SPECIES 5 ENSGT00940000157785 ENSGT01100000263543.c ENSGT00940000160189 ENSGT00390000016054.a ENSGT00940000155095 ENSGT00390000002112 ENSGT00950000183028.a.a.b ENSGT00530000063596.A.j ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000154317.a.b ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.b ENSGT00940000155462 #27 ENSGT00940000164609 ENSGT00940000170463 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 ENSGT00940000158213 #36 ENSGT00940000158473 Spotted gar MODERN SPECIES 647 EPHA7 (ENSLOCG00000016956) manea (ENSLOCG00000016959) FUT9 (ENSLOCG00000018014) ufl1 (ENSLOCG00000016960) fhl5 (ENSLOCG00000016962) ENSLOCG00000016965 GPR63 (ENSLOCG00000016966) ENSLOCG00000016967 ENSLOCG00000018015 dse (ENSLOCG00000016968) #17 nt5dc1 (ENSLOCG00000016969) #18 col10a1a (ENSLOCG00000016970) ENSLOCG00000016972 FRK (ENSLOCG00000016973) #20 HS3ST5 (ENSLOCG00000016976) #21 HDAC2 (ENSLOCG00000016977) #22 marcksa (ENSLOCG00000016978) #23 LAMA4 (ENSLOCG00000016979) #24 tube1 (ENSLOCG00000016981) #25 ccn6 (ENSLOCG00000016984) #26 ENSLOCG00000016985 fynb (ENSLOCG00000016987) #27 ENSLOCG00000018016 ENSLOCG00000016988 REV3L (ENSLOCG00000016989) #29 slc16a10 (ENSLOCG00000016991) #31 rpf2 (ENSLOCG00000016992) #32 amd1 (ENSLOCG00000016993) #34 CDK19 (ENSLOCG00000016995) #36 tab2 (ENSLOCG00000016998) ENSLOCG00000017000 Osteoglossocephalai ANCESTRAL SPECIES 2 ENSGT00950000183031.A.a.b ENSGT00940000155887.a ENSGT01090000260070.D.b ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00940000155095.j ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000154317.a.b.b ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00990000210177 ENSGT00730000111419.a #23 ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.b ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000155462.`b.a #27 ENSGT00940000164609 ENSGT00940000156713.n ENSGT00960000186966 ENSGT00940000170463 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 Osteoglossiformes ANCESTRAL SPECIES 11 ENSGT00550000074802 ENSGT00620000088063 ENSGT01090000260070.D.a ENSGT00940000158228.a.s ENSGT00940000157785 ENSGT00940000167164 ENSGT00940000155095.j ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000154317.a.b.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00990000210177 ENSGT00730000111419.a #23 ENSGT00940000165424 ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462.`b.a #27 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 ENSGT00940000158213 #36 ENSGT00940000158473 ENSGT00940000155107.a.b ENSGT00940000156283 Asian bonytongue MODERN SPECIES GJA10 (ENSSFOG00015021622) BACH2 (ENSSFOG00015021616) map3k7 (ENSSFOG00015021548) epha7 (ENSSFOG00015021490) FUT9 (ENSSFOG00015021481) FUT9 (ENSSFOG00015021476) FUT9 (ENSSFOG00015021469) ufl1 (ENSSFOG00015021424) GPR63 (ENSSFOG00015021315) NDUFAF4 (ENSSFOG00015021309) dse (ENSSFOG00015021300) #17 nt5dc1 (ENSSFOG00015021275) #18 COL10A1 (ENSSFOG00015021292) FRK (ENSSFOG00015027272) #20 HS3ST5 (ENSSFOG00015031919) #21 HDAC2 (ENSSFOG00015021171) #22 ENSSFOG00015029402 marcksa (ENSSFOG00015031065) #23 lama4 (ENSSFOG00015021131) tube1 (ENSSFOG00015021118) #25 ccn6 (ENSSFOG00015021113) #26 ENSSFOG00015024953 FYN (ENSSFOG00015021008) #27 REV3L (ENSSFOG00015020961) #29 mfsd4b (ENSSFOG00015020952) #30 slc16a10 (ENSSFOG00015020930) #31 mfsd4b (ENSSFOG00015028785) #30 ENSSFOG00015027775 mfsd4b (ENSSFOG00015031587) #30 rpf2 (ENSSFOG00015020916) #32 amd1 (ENSSFOG00015020897) #34 P. kingsleyae MODERN SPECIES 97 casp8ap2 (ENSPKIG00000018485) GJA10 (ENSPKIG00000018518) BACH2 (ENSPKIG00000018543) map3k7 (ENSPKIG00000018594) epha7 (ENSPKIG00000018679) FUT9 (ENSPKIG00000018708) ufl1 (ENSPKIG00000018737) GPR63 (ENSPKIG00000018795) NDUFAF4 (ENSPKIG00000018806) ENSPKIG00000018817 dse (ENSPKIG00000018831) #17 nt5dc1 (ENSPKIG00000018862) #18 COL10A1 (ENSPKIG00000018910) FRK (ENSPKIG00000018922) #20 HS3ST5 (ENSPKIG00000018953) #21 HDAC2 (ENSPKIG00000018988) #22 ENSPKIG00000019049 marcksa (ENSPKIG00000019063) #23 lama4 (ENSPKIG00000019078) tube1 (ENSPKIG00000019145) #25 ccn6 (ENSPKIG00000019211) #26 ENSPKIG00000019223 FYN (ENSPKIG00000019310) #27 REV3L (ENSPKIG00000019348) #29 mfsd4b (ENSPKIG00000019462) #30 slc16a10 (ENSPKIG00000019474) #31 rpf2 (ENSPKIG00000019506) #32 amd1 (ENSPKIG00000019547) #34 CDK19 (ENSPKIG00000019615) #36 tab2 (ENSPKIG00000019689) ENSPKIG00000019720 Clupeocephala ANCESTRAL SPECIES 1 ENSGT01090000260070.D.a ENSGT00940000167916 ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00940000155095.j ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000154317.a.b.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT01030000234896 ENSGT00940000155725 #22 ENSGT00990000210177 ENSGT00730000111419.a #23 ENSGT00940000159970 #24 ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.b ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000170463 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 Euteleosteomorpha ANCESTRAL SPECIES 8 ENSGT01090000260070.D.a ENSGT00940000167916 ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00940000155095.j ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000154317.a.b.b ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT01030000234896 ENSGT00940000155725 #22 ENSGT00990000210177.a ENSGT00730000111419.a #23 ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000170463 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 ENSGT00940000158213 #36 Acanthomorphata ANCESTRAL SPECIES 121 ENSGT00620000088063 ENSGT01030000235133 ENSGT01090000260070.D.a ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000154317.a.b.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT01030000234896 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000170463 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 ENSGT00940000158213 #36 ENSGT00940000158473 Euacanthomorphacea ANCESTRAL SPECIES 75 ENSGT00550000074802 ENSGT00620000088063 ENSGT01030000235133 ENSGT01090000260070.D.a ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000154317.a.b.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000170463 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 ENSGT00940000158213 #36 Pinecone sodierfish MODERN SPECIES 16 MDN1 (ENSMMDG00005015147) casp8ap2 (ENSMMDG00005015156) GJA10 (ENSMMDG00005015158) BACH2 (ENSMMDG00005015159) map3k7 (ENSMMDG00005015168) ENSMMDG00005016392 epha7 (ENSMMDG00005016397) ufl1 (ENSMMDG00005016601) GPR63 (ENSMMDG00005016613) NDUFAF4 (ENSMMDG00005016616) dse (ENSMMDG00005016619) #17 nt5dc1 (ENSMMDG00005016625) #18 ENSMMDG00005016656 FRK (ENSMMDG00005016660) #20 HS3ST5 (ENSMMDG00005016668) #21 HDAC2 (ENSMMDG00005016678) #22 ENSMMDG00005017405 ENSMMDG00005017407 ENSMMDG00005017408 ENSMMDG00005017426 tube1 (ENSMMDG00005018056) #25 ccn6 (ENSMMDG00005018060) #26 ENSMMDG00005018072 fynb (ENSMMDG00005018083) #27 ENSMMDG00005018939 ENSMMDG00005018944 REV3L (ENSMMDG00005018954) #29 mfsd4b (ENSMMDG00005019233) #30 slc16a10 (ENSMMDG00005019234) #31 rpf2 (ENSMMDG00005019249) #32 amd1 (ENSMMDG00005019745) #34 Percomorphaceae ANCESTRAL SPECIES 70 ENSGT00970000193844 ENSGT00620000088063 ENSGT01030000235133 ENSGT01090000260070.D.a ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000154317.a.b.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000170463 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 ENSGT00940000158213 #36 Percomorphaceae_B ANCESTRAL SPECIES 28 ENSGT00550000074802 ENSGT00620000088063 ENSGT01090000260070.D.a ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000154317.a.b.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000177477 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000163149.a.b.c.a.a ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000170463 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 Ovalentaria ANCESTRAL SPECIES 19 ENSGT00620000088063 ENSGT01090000260070.D.a ENSGT00940000167916 ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000154317.a.b.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000177477 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000163149.a.b.c.a.a ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000170463 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 Ovalentaria_B ANCESTRAL SPECIES 17 ENSGT00390000002957 ENSGT00550000074802 ENSGT00620000088063 ENSGT01090000260070.D.a ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000154317.a.b.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00940000177477 ENSGT00730000111419.a #23 ENSGT00940000163149.a.b.c.a.a ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000170463 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 Cichlidae ANCESTRAL SPECIES 46 ENSGT00390000002957 ENSGT00550000074802 ENSGT00620000088063 ENSGT01090000260070.D.a ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000154317.a.b.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00940000177477 ENSGT00730000111419.a #23 ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000170463 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 Midas cichlid MODERN SPECIES 1001 HS3ST5 (ENSACIG00000007189) #21 HDAC2 (ENSACIG00000007200) #22 ENSACIG00000007231 marcksa (ENSACIG00000007250) #23 lmo3 (ENSACIG00000007274) dera (ENSACIG00000007285) msrb3 (ENSACIG00000007306) lemd3 (ENSACIG00000007330) tmbim4 (ENSACIG00000007414) ENSACIG00000007447 b2m (ENSACIG00000007592) hspa14 (ENSACIG00000007628) prl2 (ENSACIG00000007665) rint1 (ENSACIG00000007775) plekha5 (ENSACIG00000007820) aebp2 (ENSACIG00000007891) ndufa5 (ENSACIG00000007912) Pseudocrenilabrinae ANCESTRAL SPECIES 6 ENSGT00390000002957 ENSGT00550000074802 ENSGT00620000088063 ENSGT01090000260070.D.a ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000154317.a.b.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000170463 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 ENSGT00940000158213 #36 Nile tilapia MODERN SPECIES 6 ENSONIG00000034375 ENSONIG00000036489 ENSONIG00000042217 ENSONIG00000028912 epha7 (ENSONIG00000011317) ENSONIG00000030954 ufl1 (ENSONIG00000011332) GPR63 (ENSONIG00000011335) ndufaf4 (ENSONIG00000042678) dse (ENSONIG00000011338) #17 nt5dc1 (ENSONIG00000011339) #18 ENSONIG00000040979 COL10A1 (ENSONIG00000011344) FRK (ENSONIG00000011345) #20 HS3ST5 (ENSONIG00000011349) #21 HDAC2 (ENSONIG00000011350) #22 marcks (ENSONIG00000033764) #23 ENSONIG00000029058 ENSONIG00000042152 ENSONIG00000011356 ENSONIG00000035627 tube1 (ENSONIG00000011362) #25 ccn6 (ENSONIG00000011364) #26 ENSONIG00000031292 fynb (ENSONIG00000011372) #27 ENSONIG00000033375 ENSONIG00000041438 ENSONIG00000032274 REV3L (ENSONIG00000011378) #29 mfsd4b (ENSONIG00000011381) #30 slc16a10 (ENSONIG00000011382) #31 Pseudocrenilabrinae_A ANCESTRAL SPECIES 3 ENSGT00390000002957 ENSGT00550000074802 ENSGT00620000088063 ENSGT01090000260070.D.a ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000154317.a.b.b ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000170463 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 ENSGT00940000158213 #36 Lyretail cichlid MODERN SPECIES 333 map3k7 (ENSNBRG00000012646) ENSNBRG00000012595 ENSNBRG00000012582 ENSNBRG00000012567 ENSNBRG00000012548 epha7 (ENSNBRG00000011772) ufl1 (ENSNBRG00000011618) GPR63 (ENSNBRG00000011608) NDUFAF4 (ENSNBRG00000011600) dse (ENSNBRG00000011590) #17 ENSNBRG00000011576 COL10A1 (ENSNBRG00000011556) nt5dc1 (ENSNBRG00000011520) #18 FRK (ENSNBRG00000011483) #20 HS3ST5 (ENSNBRG00000011470) #21 HDAC2 (ENSNBRG00000011433) #22 marcksa (ENSNBRG00000011420) #23 ENSNBRG00000011389 tube1 (ENSNBRG00000011358) #25 ccn6 (ENSNBRG00000011314) #26 ENSNBRG00000011258 fynb (ENSNBRG00000011225) #27 ENSNBRG00000011215 ENSNBRG00000011201 ENSNBRG00000011189 ENSNBRG00000011172 #29 mfsd4b (ENSNBRG00000011150) #30 slc16a10 (ENSNBRG00000011123) #31 rpf2 (ENSNBRG00000011087) #32 amd1 (ENSNBRG00000011045) #34 CDK19 (ENSNBRG00000011017) #36 Haplochromini ANCESTRAL SPECIES 23 ENSGT00550000074802 ENSGT00620000088063 ENSGT01090000260070.D.a ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT01090000260981.a ENSGT00940000155676 #18 ENSGT00940000154317.a.b.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 ENSGT00940000158213 #36 ENSGT00940000158473 Burton s mouthbrooder MODERN SPECIES 395 ufl1 (ENSHBUG00000022275) GPR63 (ENSHBUG00000022229) NDUFAF4 (ENSHBUG00000022222) dse (ENSHBUG00000022208) #17 nt5dc1 (ENSHBUG00000022187) #18 ENSHBUG00000022148 COL10A1 (ENSHBUG00000022135) FRK (ENSHBUG00000022132) #20 ENSHBUG00000022104 HS3ST5 (ENSHBUG00000022092) #21 HDAC2 (ENSHBUG00000022068) #22 marcksa (ENSHBUG00000022037) #23 ENSHBUG00000022026 tube1 (ENSHBUG00000022009) #25 ccn6 (ENSHBUG00000021994) #26 ENSHBUG00000021989 fynb (ENSHBUG00000021963) #27 ENSHBUG00000021916 ENSHBUG00000021897 REV3L (ENSHBUG00000021874) #29 mfsd4b (ENSHBUG00000021853) #30 slc16a10 (ENSHBUG00000021828) #31 rpf2 (ENSHBUG00000021805) #32 amd1 (ENSHBUG00000021761) #34 CDK19 (ENSHBUG00000021722) #36 tab2 (ENSHBUG00000021637) Haplochromini_A ANCESTRAL SPECIES 26 ENSGT00550000074802 ENSGT00620000088063 ENSGT01090000260070.D.a ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000154348.c.b.b.a.b.d.b.h.a.b ENSGT00940000167164 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000154317.a.b.b ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a.a.a ENSGT00940000155462.`b.b #27 ENSGT00940000164609.a ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 ENSGT00940000158213 #36 ENSGT00940000158473 ENSGT00940000155107.a.b P. nyererei MODERN SPECIES 469 HS3ST5 (ENSPNYG00000011494) #21 HDAC2 (ENSPNYG00000011472) #22 marcksa (ENSPNYG00000011424) #23 ENSPNYG00000011147 tube1 (ENSPNYG00000011071) #25 ccn6 (ENSPNYG00000011033) #26 ENSPNYG00000011016 ENSPNYG00000011004 fynb (ENSPNYG00000010964) #27 ENSPNYG00000010937 REV3L (ENSPNYG00000010886) #29 mfsd4b (ENSPNYG00000010855) #30 slc16a10 (ENSPNYG00000010816) #31 ENSPNYG00000010797 amd1 (ENSPNYG00000010770) #34 ENSPNYG00000010754 #36 CDK19 (ENSPNYG00000010726) #36 Haplochromini_B ANCESTRAL SPECIES 29 ENSGT00550000074802 ENSGT00620000088063 ENSGT01090000260070.D.a ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000154348.c.b.b.a.b.d.b.h.a.b ENSGT00940000167164 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000154317.a.b.b ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a.a.a ENSGT00940000155462.`b.b #27 ENSGT00940000164609.a ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 ENSGT00940000158213 #36 ENSGT00940000158473 ENSGT00940000155107.a.b Zebra mbuna MODERN SPECIES 1097 ENSMZEG00005016004 ube2j1 (ENSMZEG00005015995) ENSMZEG00005015990 ENSMZEG00005015985 ENSMZEG00005015978 epha7 (ENSMZEG00005015956) ENSMZEG00005015945 ufl1 (ENSMZEG00005015928) GPR63 (ENSMZEG00005015923) NDUFAF4 (ENSMZEG00005015921) dse (ENSMZEG00005015912) #17 COL10A1 (ENSMZEG00005015905) nt5dc1 (ENSMZEG00005015890) #18 FRK (ENSMZEG00005015874) #20 HS3ST5 (ENSMZEG00005015855) #21 HDAC2 (ENSMZEG00005015845) #22 marcksa (ENSMZEG00005015838) #23 ENSMZEG00005015787 tube1 (ENSMZEG00005015763) #25 ccn6 (ENSMZEG00005015756) #26 ENSMZEG00005015743 fynb (ENSMZEG00005015722) #27 ENSMZEG00005015702 REV3L (ENSMZEG00005015682) #29 mfsd4b (ENSMZEG00005015667) #30 slc16a10 (ENSMZEG00005015648) #31 rpf2 (ENSMZEG00005015632) #32 amd1 (ENSMZEG00005015619) #34 ENSMZEG00005015606 #36 CDK19 (ENSMZEG00005015593) #36 tab2 (ENSMZEG00005015566) Eastern happy MODERN SPECIES 6 ENSACLG00000019837 ENSACLG00000019834 ENSACLG00000019791 ENSACLG00000019784 epha7 (ENSACLG00000019736) ENSACLG00000019726 ufl1 (ENSACLG00000019612) GPR63 (ENSACLG00000019598) NDUFAF4 (ENSACLG00000019594) dse (ENSACLG00000019583) #17 COL10A1 (ENSACLG00000019556) nt5dc1 (ENSACLG00000019484) #18 FRK (ENSACLG00000019463) #20 ENSACLG00000019457 HS3ST5 (ENSACLG00000019391) #21 HDAC2 (ENSACLG00000019252) #22 marcksa (ENSACLG00000019233) #23 ENSACLG00000019136 tube1 (ENSACLG00000019080) #25 ccn6 (ENSACLG00000019051) #26 ENSACLG00000019018 fynb (ENSACLG00000018933) #27 ENSACLG00000018859 REV3L (ENSACLG00000018811) #29 mfsd4b (ENSACLG00000018795) #30 ENSACLG00000018788 slc16a10 (ENSACLG00000018757) #31 amd1 (ENSACLG00000018679) #34 ENSACLG00000018669 #36 CDK19 (ENSACLG00000018630) #36 tab2 (ENSACLG00000018555) Pomacentridae ANCESTRAL SPECIES 21 ENSGT00620000088063 ENSGT01090000260070.D.a ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676.f #18 ENSGT00940000154317.a.b.b ENSGT00940000155676.e #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000177477 ENSGT00940000155725 #22 ENSGT00940000180297 ENSGT00730000111419.a #23 ENSGT00940000163149.a.b.c.a.a ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 Bicolor damselfish MODERN SPECIES 647 HS3ST5 (ENSSPAG00000005340) #21 HDAC2 (ENSSPAG00000005293) #22 ENSSPAG00000005275 marcksa (ENSSPAG00000005250) #23 ENSSPAG00000005246 ENSSPAG00000004819 tube1 (ENSSPAG00000004741) #25 ccn6 (ENSSPAG00000004697) #26 ENSSPAG00000004683 ENSSPAG00000004672 #27 Pomacentridae_A ANCESTRAL SPECIES 25 ENSGT00620000088063 ENSGT01090000260070.D.a ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676.f #18 ENSGT00940000154317.a.b.b ENSGT00940000155676.e #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000177477 ENSGT00940000155725 #22 ENSGT00940000180297 ENSGT00730000111419.a #23 ENSGT00940000163149.a.b.c.a.a ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 Spiny chromis MODERN SPECIES 559 ENSAPOG00000019086 HDAC2 (ENSAPOG00000019142) #22 drc1 (ENSAPOG00000019165) marcksa (ENSAPOG00000019175) #23 ENSAPOG00000019190 ENSAPOG00000019205 ENSAPOG00000019248 tube1 (ENSAPOG00000019323) #25 ccn6 (ENSAPOG00000019387) #26 ENSAPOG00000019398 Amphiprion ANCESTRAL SPECIES 14 ENSGT00550000074802 ENSGT00620000088063 ENSGT01090000260070.D.a ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676.f #18 ENSGT00940000154317.a.b.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000177477 ENSGT00940000155725 #22 ENSGT00940000180297 ENSGT00730000111419.a #23 ENSGT00940000163149.a.b.c.a.a.d ENSGT00940000163149.a.b.c.a.a.c ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 Clown anemonefish MODERN SPECIES 3191 GPR63 (ENSAOCG00000008117) ENSAOCG00000008121 dse (ENSAOCG00000008149) #17 COL10A1 (ENSAOCG00000008159) nt5dc1 (ENSAOCG00000008202) #18 ENSAOCG00000008216 ENSAOCG00000008229 ENSAOCG00000008251 FRK (ENSAOCG00000008294) #20 HS3ST5 (ENSAOCG00000008311) #21 ENSAOCG00000008331 HDAC2 (ENSAOCG00000008362) #22 ENSAOCG00000008373 marcksa (ENSAOCG00000008380) #23 ENSAOCG00000008394 ENSAOCG00000008500 ENSAOCG00000008570 tube1 (ENSAOCG00000008631) #25 ccn6 (ENSAOCG00000008682) #26 ENSAOCG00000008713 Orange clownfish MODERN SPECIES 2 ENSAPEG00000002159 ENSAPEG00000002195 ENSAPEG00000002307 ENSAPEG00000002321 ENSAPEG00000002335 ENSAPEG00000002351 ENSAPEG00000002371 ENSAPEG00000002427 ENSAPEG00000002436 ENSAPEG00000002444 ENSAPEG00000002452 ENSAPEG00000002470 ENSAPEG00000002497 FRK (ENSAPEG00000002853) #20 HS3ST5 (ENSAPEG00000002869) #21 HDAC2 (ENSAPEG00000002885) #22 ENSAPEG00000002933 marcksa (ENSAPEG00000002953) #23 ENSAPEG00000002965 ENSAPEG00000002980 ENSAPEG00000002993 ENSAPEG00000003053 TUBE1 (ENSAPEG00000003578) #25 ccn6 (ENSAPEG00000003618) #26 TUBE1 (ENSAPEG00000003640) #25 ccn6 (ENSAPEG00000003663) #26 ENSAPEG00000003697 fynb (ENSAPEG00000003775) #27 ENSAPEG00000003856 ENSAPEG00000003862 REV3L (ENSAPEG00000003899) #29 Atherinomorphae ANCESTRAL SPECIES 18 ENSGT01030000235133.a.a ENSGT01090000260070.D.a ENSGT00940000167916 ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000154317.a.b.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000177477 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000159970 #24 ENSGT00940000163149.a.b.c.a.a ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 Cyprinodontiformes ANCESTRAL SPECIES 14 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00940000177477 ENSGT00730000111419.a #23 ENSGT00940000159970 #24 ENSGT00940000163149.a.b.c.a.a ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 Cyprinodontoidei ANCESTRAL SPECIES 12 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000177477 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000159970 #24 ENSGT00940000163149.a.b.c.a.a ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 NAME_4 ANCESTRAL SPECIES 172 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00940000177477 ENSGT00730000111419.a #23 ENSGT00940000163149.a.b.c.a.a ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 Mummichog MODERN SPECIES 639 HS3ST5 (ENSFHEG00000018087) #21 ENSFHEG00000018104 HDAC2 (ENSFHEG00000018149) #22 marcksa (ENSFHEG00000018155) #23 ENSFHEG00000018212 Sheepshead minnow MODERN SPECIES 489 HS3ST5 (ENSCVAG00000000877) #21 HDAC2 (ENSCVAG00000004322) #22 ENSCVAG00000004251 marcksa (ENSCVAG00000004243) #23 ENSCVAG00000004235 ENSCVAG00000000118 tube1 (ENSCVAG00000000626) #25 ccn6 (ENSCVAG00000004154) #26 ENSCVAG00000004145 fynb (ENSCVAG00000023212) #27 ENSCVAG00000023140 REV3L (ENSCVAG00000023118) #29 mfsd4b (ENSCVAG00000023034) #30 slc16a10 (ENSCVAG00000023027) #31 Poeciliinae ANCESTRAL SPECIES 15 ENSGT00950000183034.C.a.a ENSGT01020000230346.A.d ENSGT00390000004542 ENSGT00390000003223 ENSGT01030000234623.a.a.a.a.b ENSGT01090000260070.A ENSGT01030000235398 ENSGT00940000156535 ENSGT00620000087993.a.a ENSGT00940000169801 ENSGT01050000244824.E ENSGT00390000002768.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000177477 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000159970 #24 ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 ENSGT00940000158213 #36 Poecilia ANCESTRAL SPECIES 9 ENSGT00940000158591.g.a ENSGT00390000011674 ENSGT00950000183034.C.a.a ENSGT01020000230346.A.d ENSGT00390000004542 ENSGT00390000003223 ENSGT01030000234623.a.a.a.a.b ENSGT01090000260070.A ENSGT00940000156535 ENSGT00620000087993.a.a ENSGT01050000244824.E ENSGT00390000002768.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000177477 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 ENSGT00940000158213 #36 ENSGT00940000158473 NAME_6 ANCESTRAL SPECIES 183 ENSGT00940000158591.g.a ENSGT00390000011674 ENSGT00950000183034.C.a.a ENSGT01020000230346.A.d ENSGT00390000004542 ENSGT00390000003223 ENSGT01030000234623.a.a.a.a.b ENSGT01090000260070.A ENSGT00940000156535 ENSGT00620000087993.a.a ENSGT01050000244824.E ENSGT00390000002768.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000177477 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 Amazon molly MODERN SPECIES 514 cfap206 (ENSPFOG00000014453) GABRR1 (ENSPFOG00000014517) smim8 (ENSPFOG00000014530) znf292b (ENSPFOG00000014543) psmc6 (ENSPFOG00000014622) cgrrf1 (ENSPFOG00000014706) nus1 (ENSPFOG00000014815) serinc1 (ENSPFOG00000014938) gja1b (ENSPFOG00000020917) gopc (ENSPFOG00000015046) ENSPFOG00000015130 mcm9 (ENSPFOG00000015210) ENSPFOG00000020918 FRK (ENSPFOG00000015256) #20 HS3ST5 (ENSPFOG00000015320) #21 HDAC2 (ENSPFOG00000015383) #22 marcksa (ENSPFOG00000015557) #23 Sailfin molly MODERN SPECIES 114 cfap206 (ENSPLAG00000018705) GABRR1 (ENSPLAG00000018744) smim8 (ENSPLAG00000018755) znf292b (ENSPLAG00000018787) psmc6 (ENSPLAG00000018821) cgrrf1 (ENSPLAG00000018830) nus1 (ENSPLAG00000018836) serinc1 (ENSPLAG00000018866) gja1b (ENSPLAG00000018891) gopc (ENSPLAG00000018925) ENSPLAG00000018933 mcm9 (ENSPLAG00000018959) FRK (ENSPLAG00000018970) #20 HS3ST5 (ENSPLAG00000018977) #21 ENSPLAG00000018988 HDAC2 (ENSPLAG00000019034) #22 marcksa (ENSPLAG00000019046) #23 yme1l1b (ENSPLAG00000019108) rab18b (ENSPLAG00000019136) mkxb (ENSPLAG00000019153) ENSPLAG00000019207 ENSPLAG00000019219 Guppy MODERN SPECIES 452 cfap206 (ENSPREG00000001097) GABRR1 (ENSPREG00000000927) smim8 (ENSPREG00000000879) znf292b (ENSPREG00000000824) psmc6 (ENSPREG00000000744) cgrrf1 (ENSPREG00000000724) nus1 (ENSPREG00000000700) serinc1 (ENSPREG00000000665) gja1b (ENSPREG00000000656) gopc (ENSPREG00000000630) ENSPREG00000000626 mcm9 (ENSPREG00000021053) ENSPREG00000021046 ENSPREG00000021029 #20 HS3ST5 (ENSPREG00000021019) #21 HDAC2 (ENSPREG00000020961) #22 marcksa (ENSPREG00000020939) #23 ENSPREG00000020833 tube1 (ENSPREG00000020777) #25 ccn6 (ENSPREG00000020750) #26 ENSPREG00000020734 fynb (ENSPREG00000020673) #27 ENSPREG00000020651 ENSPREG00000020622 REV3L (ENSPREG00000020577) #29 mfsd4b (ENSPREG00000020558) #30 slc16a10 (ENSPREG00000020544) #31 rpf2 (ENSPREG00000020525) #32 amd1 (ENSPREG00000020488) #34 CDK19 (ENSPREG00000020441) #36 tab2 (ENSPREG00000020402) Platyfish MODERN SPECIES 6 ENSXMAG00000023794 psmc6 (ENSXMAG00000005307) cgrrf1 (ENSXMAG00000005298) nus1 (ENSXMAG00000005293) serinc1 (ENSXMAG00000005270) gja1b (ENSXMAG00000005269) ENSXMAG00000026554 gopc (ENSXMAG00000005257) ENSXMAG00000005255 ENSXMAG00000022119 ENSXMAG00000021508 ENSXMAG00000021537 FRK (ENSXMAG00000005239) #20 ENSXMAG00000022132 HS3ST5 (ENSXMAG00000005236) #21 HDAC2 (ENSXMAG00000005199) #22 marcksa (ENSXMAG00000005197) #23 LAMA4 (ENSXMAG00000005194) #24 tube1 (ENSXMAG00000005172) #25 ccn6 (ENSXMAG00000027662) #26 ENSXMAG00000005128 fynb (ENSXMAG00000005094) #27 ENSXMAG00000023818 ENSXMAG00000005091 REV3L (ENSXMAG00000022599) #29 mfsd4b (ENSXMAG00000000455) #30 slc16a10 (ENSXMAG00000021796) #31 rpf2 (ENSXMAG00000021706) #32 amd1 (ENSXMAG00000005067) #34 CDK19 (ENSXMAG00000005037) #36 tab2 (ENSXMAG00000005024) Oryzias ANCESTRAL SPECIES 38 ENSGT00620000088063 ENSGT01030000235133.a.a ENSGT01090000260070.D.a ENSGT00940000167916 ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000154317.a.b.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00940000177477 ENSGT00730000111419.a #23 ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000167177 ENSGT00390000003855.b.e.b ENSGT00900000141110 ENSGT00940000153635.B ENSGT00940000157624.a ENSGT00390000011890 ENSGT00390000016097.c ENSGT00940000164083 Oryzias_b ANCESTRAL SPECIES 55 ENSGT00550000074802 ENSGT00620000088063 ENSGT01030000235133.a.a ENSGT01090000260070.D.a ENSGT00940000167916 ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000154317.a.b.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000167177 ENSGT00390000003855.b.e.b ENSGT00900000141110 ENSGT00940000153635.B ENSGT00940000157624.a ENSGT00390000011890 ENSGT00390000016097.c ENSGT00940000164083 ENSGT00390000004904 Indian medaka MODERN SPECIES 22 SLC16A6 (ENSOMEG00000000066) wipi1 (ENSOMEG00000003137) zgc:86896 (ENSOMEG00000003180) ppp4cb (ENSOMEG00000003223) aldh3b1 (ENSOMEG00000003237) clpp (ENSOMEG00000003271) hivep2a (ENSOMEG00000003314) e2f6 (ENSOMEG00000003348) GPR63 (ENSOMEG00000003355) ENSOMEG00000003363 dse (ENSOMEG00000003376) #17 COL10A1 (ENSOMEG00000003386) nt5dc1 (ENSOMEG00000003405) #18 FRK (ENSOMEG00000003439) #20 HS3ST5 (ENSOMEG00000003464) #21 HDAC2 (ENSOMEG00000003501) #22 marcksa (ENSOMEG00000003511) #23 ENSOMEG00000003553 tube1 (ENSOMEG00000003592) #25 ccn6 (ENSOMEG00000003611) #26 ENSOMEG00000003626 fynb (ENSOMEG00000003649) #27 dll4 (ENSOMEG00000003701) chac1 (ENSOMEG00000003717) ino80 (ENSOMEG00000003791) vps18 (ENSOMEG00000003811) rhov (ENSOMEG00000003823) ENSOMEG00000003830 pigh (ENSOMEG00000003839) ZFYVE1 (ENSOMEG00000003872) wdr21 (ENSOMEG00000003901) Javanese ricefish MODERN SPECIES 16 ENSOJAG00000019306 ENSOJAG00000019326 ENSOJAG00000019392 ELOVL4 (ENSOJAG00000019500) tent5ab (ENSOJAG00000019522) ENSOJAG00000019551 zgc:194202 (ENSOJAG00000019567) PRSS35 (ENSOJAG00000019581) WDR20 (ENSOJAG00000019593) hsp90aa1.1 (ENSOJAG00000019717) ppp2r5cb (ENSOJAG00000020459) slc25a47a (ENSOJAG00000020880) ENSOJAG00000020894 ENSOJAG00000020902 HS3ST5 (ENSOJAG00000020935) #21 HDAC2 (ENSOJAG00000020960) #22 marcksa (ENSOJAG00000021255) #23 ENSOJAG00000015506 tube1 (ENSOJAG00000017089) #25 ccn6 (ENSOJAG00000017127) #26 ENSOJAG00000017135 fynb (ENSOJAG00000017231) #27 dll4 (ENSOJAG00000017651) CHAC1 (ENSOJAG00000017675) ENSOJAG00000017697 vps18 (ENSOJAG00000017771) rhov (ENSOJAG00000017793) pigh (ENSOJAG00000017801) ZFYVE1 (ENSOJAG00000017814) wdr21 (ENSOJAG00000017846) ENSOJAG00000017867 Oryzias_a ANCESTRAL SPECIES 48 ENSGT00550000074802 ENSGT00620000088063 ENSGT01090000260070.D.a ENSGT00940000158228.a ENSGT00950000182892.b.b ENSGT00940000157785 ENSGT00940000167164 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000154317.a.b.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00940000177477 ENSGT00730000111419.a #23 ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000167177 ENSGT00390000003855.b.e.b ENSGT00900000141110 ENSGT00940000153635.B ENSGT00940000157624.a ENSGT00390000011890 ENSGT00390000016097.c ENSGT00940000164083 Chinese medaka MODERN SPECIES 1262 ENSOSIG00000018682 HDAC2 (ENSOSIG00000018708) #22 marcksa (ENSOSIG00000018747) #23 ENSOSIG00000018787 ENSOSIG00000019479 tube1 (ENSOSIG00000019481) #25 ccn6 (ENSOSIG00000019483) #26 ENSOSIG00000019484 dll4 (ENSOSIG00000019485) vps18 (ENSOSIG00000019497) rhov (ENSOSIG00000019529) pigh (ENSOSIG00000019531) ZFYVE1 (ENSOSIG00000019536) wdr21 (ENSOSIG00000019546) ccn2a (ENSOSIG00000019593) ENSOSIG00000019600 sel1l (ENSOSIG00000019613) Japanese Medaka HdrR MODERN SPECIES 16 MDN1 (ENSORLG00000017913) casp8ap2 (ENSORLG00000017922) GJA10 (ENSORLG00000017923) BACH2 (ENSORLG00000017926) ENSORLG00000029360 map3k7 (ENSORLG00000017940) epha7 (ENSORLG00000017959) ufl1 (ENSORLG00000017971) GPR63 (ENSORLG00000017974) NDUFAF4 (ENSORLG00000017975) dse (ENSORLG00000021842) #17 nt5dc1 (ENSORLG00000017979) #18 COL10A1 (ENSORLG00000027315) FRK (ENSORLG00000017982) #20 HS3ST5 (ENSORLG00000024718) #21 HDAC2 (ENSORLG00000017990) #22 ENSORLG00000026848 marcksa (ENSORLG00000017991) #23 ENSORLG00000017997 tube1 (ENSORLG00000018008) #25 ccn6 (ENSORLG00000018013) #26 ENSORLG00000018016 fynb (ENSORLG00000018018) #27 dll4 (ENSORLG00000018020) chac1 (ENSORLG00000023085) ino80 (ENSORLG00000018028) vps18 (ENSORLG00000018032) rhov (ENSORLG00000018035) pigh (ENSORLG00000024512) ENSORLG00000018040 wdr21 (ENSORLG00000018044) Percomorphaceae_C ANCESTRAL SPECIES 24 ENSGT00550000074802 ENSGT00620000088063 ENSGT01090000260070.D.a ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000154317.a.b.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000177477 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000163149.a.b.c.a.a ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 ENSGT00940000158213 #36 Eupercaria ANCESTRAL SPECIES 28 ENSGT00550000074802 ENSGT00620000088063 ENSGT01090000260070.D.a ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000154317.a.b.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000177477 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000163149.a.b.c.a.a ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 ENSGT00940000158213 #36 Tetraodontidae ANCESTRAL SPECIES 111 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT01030000234896 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462.`b.b #27 ENSGT00940000164609.a ENSGT00940000156226 #29 ENSGT00530000063320.B #30 Fugu MODERN SPECIES 7 znf292b (ENSTRUG00000030479) ENSTRUG00000032623 ENSTRUG00000025343 olfcb1 (ENSTRUG00000005155) zgc:112001 (ENSTRUG00000006108) LRFN2 (ENSTRUG00000006117) GPR63 (ENSTRUG00000006192) ENSTRUG00000030826 dse (ENSTRUG00000006239) #17 ENSTRUG00000030927 COL10A1 (ENSTRUG00000031328) nt5dc1 (ENSTRUG00000006279) #18 FRK (ENSTRUG00000006360) #20 HS3ST5 (ENSTRUG00000006751) #21 ENSTRUG00000027983 HDAC2 (ENSTRUG00000006770) #22 marcksa (ENSTRUG00000007040) #23 ENSTRUG00000005418 dnal1 (ENSTRUG00000024991) tube1 (ENSTRUG00000005085) #25 ccn6 (ENSTRUG00000031337) #26 fynb (ENSTRUG00000003538) #27 ENSTRUG00000028393 REV3L (ENSTRUG00000002617) #29 mfsd4b (ENSTRUG00000002351) #30 ufl1 (ENSTRUG00000001855) ENSTRUG00000027480 gopc (ENSTRUG00000026145) mcm9 (ENSTRUG00000026460) ENSTRUG00000032518 irf2 (ENSTRUG00000001842) Tetraodon DUPLICATION Tetraodon MODERN SPECIES 15 nsun2 (ENSTNIG00000009258) ENSTNIG00000009259 UBE2QL1 (ENSTNIG00000009260) med10 (ENSTNIG00000009261) irx1b (ENSTNIG00000009262) irx4b (ENSTNIG00000009263) ndufs6 (ENSTNIG00000009264) mrpl36 (ENSTNIG00000000422) sox4a (ENSTNIG00000009265) ENSTNIG00000009266 ENSTNIG00000009267 maco1a (ENSTNIG00000009268) ldlrap1a (ENSTNIG00000009269) fndc5b (ENSTNIG00000009270) ENSTNIG00000001209 ENSTNIG00000009271 #22 eif3i (ENSTNIG00000009272) txlna (ENSTNIG00000009273) KPNA6 (ENSTNIG00000009274) kcnk9 (ENSTNIG00000014017) ENSTNIG00000014018 ENSTNIG00000014019 FAM135B (ENSTNIG00000014020) KHDRBS3 (ENSTNIG00000014021) ST3GAL1 (ENSTNIG00000014022) ENSTNIG00000014023 tmem54b (ENSTNIG00000014024) zgc:91944 (ENSTNIG00000014025) cpsf1 (ENSTNIG00000014027) adck5 (ENSTNIG00000014028) ctdp1 (ENSTNIG00000014029) Tetraodon MODERN SPECIES 5 ENSTNIG00000019188 ENSTNIG00000000240 cfap206 (ENSTNIG00000019189) ENSTNIG00000019190 rmdn3 (ENSTNIG00000019191) rad51 (ENSTNIG00000019192) gjb7 (ENSTNIG00000019193) znf292b (ENSTNIG00000019194) olfcb1 (ENSTNIG00000019195) GPR63 (ENSTNIG00000005158) ENSTNIG00000005159 dse (ENSTNIG00000005160) #17 nt5dc1 (ENSTNIG00000005161) #18 FRK (ENSTNIG00000005162) #20 HS3ST5 (ENSTNIG00000005163) #21 HDAC2 (ENSTNIG00000005164) #22 marcksa (ENSTNIG00000005165) #23 Eupecaria_A ANCESTRAL SPECIES 27 ENSGT00550000074802 ENSGT00620000088063 ENSGT01090000260070.D.a ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000154317.a.b.b ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000177477 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000163149.a.b.c.a.a ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 ENSGT00940000158213 #36 Ballan wrasse MODERN SPECIES 91 epha7 (ENSLBEG00000009681) ENSLBEG00000009883 ufl1 (ENSLBEG00000010496) GPR63 (ENSLBEG00000010582) NDUFAF4 (ENSLBEG00000010595) dse (ENSLBEG00000010614) #17 nt5dc1 (ENSLBEG00000010663) #18 COL10A1 (ENSLBEG00000010716) FRK (ENSLBEG00000010745) #20 HS3ST5 (ENSLBEG00000010782) #21 HDAC2 (ENSLBEG00000010831) #22 ENSLBEG00000010923 marcksa (ENSLBEG00000010946) #23 ENSLBEG00000010971 ENSLBEG00000011176 tube1 (ENSLBEG00000011473) #25 ccn6 (ENSLBEG00000011511) #26 ENSLBEG00000011543 fynb (ENSLBEG00000011605) #27 ENSLBEG00000011639 ENSLBEG00000011656 REV3L (ENSLBEG00000011695) #29 mfsd4b (ENSLBEG00000011804) #30 slc16a10 (ENSLBEG00000011835) #31 rpf2 (ENSLBEG00000011907) #32 amd1 (ENSLBEG00000011958) #34 Eupecaria_B ANCESTRAL SPECIES 29 ENSGT00550000074802 ENSGT00620000088063 ENSGT01090000260070.D.a ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000154317.a.b.b ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000177477 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000163149.a.b.c.a.a ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 ENSGT00940000158213 #36 Perciformes ANCESTRAL SPECIES 14 ENSGT00390000002957 ENSGT00550000074802 ENSGT00620000088063 ENSGT01090000260070.D.a ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000154317.a.b.b ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000163149.a.b.c.a.a ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 ENSGT00940000158213 #36 Perciformes_a ANCESTRAL SPECIES 32 ENSGT00390000002957 ENSGT00550000074802 ENSGT00620000088063 ENSGT01090000260070.D.a ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000154317.a.b.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000163149.a.b.c.a.a ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 ENSGT00940000158213 #36 Channel bull blenny MODERN SPECIES 16 GJA10 (ENSCGOG00000018404) BACH2 (ENSCGOG00000018402) map3k7 (ENSCGOG00000017412) ENSCGOG00000017395 epha7 (ENSCGOG00000015338) ENSCGOG00000015296 ENSCGOG00000015295 ufl1 (ENSCGOG00000014789) GPR63 (ENSCGOG00000014785) NDUFAF4 (ENSCGOG00000014784) dse (ENSCGOG00000014783) #17 COL10A1 (ENSCGOG00000014774) nt5dc1 (ENSCGOG00000014568) #18 FRK (ENSCGOG00000014554) #20 HS3ST5 (ENSCGOG00000014548) #21 HDAC2 (ENSCGOG00000014421) #22 marcksa (ENSCGOG00000014296) #23 ENSCGOG00000014291 ENSCGOG00000013884 tube1 (ENSCGOG00000013815) #25 ccn6 (ENSCGOG00000013798) #26 fynb (ENSCGOG00000007518) #27 ENSCGOG00000007436 ENSCGOG00000007434 REV3L (ENSCGOG00000007186) #29 mfsd4b (ENSCGOG00000007176) #30 slc16a10 (ENSCGOG00000007175) #31 rpf2 (ENSCGOG00000006868) #32 amd1 (ENSCGOG00000006540) #34 CDK19 (ENSCGOG00000005382) #36 tab2 (ENSCGOG00000005342) Eupecaria_C ANCESTRAL SPECIES 36 ENSGT00550000074802 ENSGT00620000088063 ENSGT01090000260070.D.a ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000154317.a.b.b ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000177477 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000163149.a.b.c.a.a ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 ENSGT00940000158213 #36 Gilthead seabream MODERN SPECIES 14 ENSSAUG00010004660 GJA10 (ENSSAUG00010004665) BACH2 (ENSSAUG00010004667) map3k7 (ENSSAUG00010004684) ENSSAUG00010004868 epha7 (ENSSAUG00010004890) ufl1 (ENSSAUG00010005005) GPR63 (ENSSAUG00010005006) NDUFAF4 (ENSSAUG00010005007) dse (ENSSAUG00010005008) #17 nt5dc1 (ENSSAUG00010005011) #18 COL10A1 (ENSSAUG00010005171) FRK (ENSSAUG00010005174) #20 HS3ST5 (ENSSAUG00010005186) #21 ENSSAUG00010005188 HDAC2 (ENSSAUG00010005197) #22 ENSSAUG00010005392 ENSSAUG00010005414 ENSSAUG00010005415 ENSSAUG00010005417 ENSSAUG00010005418 ENSSAUG00010005419 ENSSAUG00010005436 tube1 (ENSSAUG00010006411) #25 ccn6 (ENSSAUG00010006415) #26 ENSSAUG00010006417 fynb (ENSSAUG00010006431) #27 LRFN2 (ENSSAUG00010008147) ENSSAUG00010008148 ENSSAUG00010008150 ENSSAUG00010008151 Eupercaria_incertae_sedis ANCESTRAL SPECIES 11 ENSGT00550000074802 ENSGT00620000088063 ENSGT01090000260070.D.a ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000154317.a.b.b ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000177477 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000163149.a.b.c.a.a ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 ENSGT00940000158213 #36 European seabass MODERN SPECIES 7 GJA10 (ENSDLAG00005007716) BACH2 (ENSDLAG00005007725) ENSDLAG00005007741 ENSDLAG00005007749 map3k7 (ENSDLAG00005007772) ENSDLAG00005027871 epha7 (ENSDLAG00005008250) ufl1 (ENSDLAG00005008918) GPR63 (ENSDLAG00005034962) NDUFAF4 (ENSDLAG00005009019) ENSDLAG00005009031 #17 NT5DC1 (ENSDLAG00005029124) #18 COL10A1 (ENSDLAG00005009072) ENSDLAG00005009075 FRK (ENSDLAG00005009085) #20 HDAC2 (ENSDLAG00005009118) #22 ENSDLAG00005010073 MARCKS (ENSDLAG00005029034) #23 ENSDLAG00005028134 ENSDLAG00005027880 tube1 (ENSDLAG00005010286) #25 CCN6 (ENSDLAG00005033113) #26 ENSDLAG00005010491 fynb (ENSDLAG00005010553) #27 ENSDLAG00005012131 REV3L (ENSDLAG00005012155) #29 MFSD4B (ENSDLAG00005032614) #30 SLC16A10 (ENSDLAG00005034130) #31 ENSDLAG00005012665 RPF2 (ENSDLAG00005012670) #32 ENSDLAG00005012928 #36 Large yellow croaker MODERN SPECIES 482 MDN1 (ENSLCRG00005011477) casp8ap2 (ENSLCRG00005011459) GJA10 (ENSLCRG00005011457) BACH2 (ENSLCRG00005011452) map3k7 (ENSLCRG00005011095) epha7 (ENSLCRG00005006440) ufl1 (ENSLCRG00005006384) GPR63 (ENSLCRG00005006370) NDUFAF4 (ENSLCRG00005006369) dse (ENSLCRG00005006365) #17 COL10A1 (ENSLCRG00005006363) nt5dc1 (ENSLCRG00005006346) #18 FRK (ENSLCRG00005006342) #20 HS3ST5 (ENSLCRG00005006340) #21 ENSLCRG00005006339 HDAC2 (ENSLCRG00005004219) #22 marcksa (ENSLCRG00005004187) #23 ENSLCRG00005004185 ENSLCRG00005004182 ENSLCRG00005004180 ENSLCRG00005004175 ENSLCRG00005003676 ccn6 (ENSLCRG00005003662) #26 tube1 (ENSLCRG00005003661) #25 ENSLCRG00005003657 FYN (ENSLCRG00005003575) #27 ENSLCRG00005003565 ENSLCRG00005003564 REV3L (ENSLCRG00005003560) #29 mfsd4b (ENSLCRG00005003558) #30 naa20 (ENSLCRG00005003557) Percomorphaceae_D ANCESTRAL SPECIES 18 ENSGT00390000002957 ENSGT00550000074802 ENSGT00620000088063 ENSGT01090000260070.D.a ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000154317.a.b.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000163149.a.b.c.a.a ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 ENSGT00940000158213 #36 Carangaria ANCESTRAL SPECIES 18 ENSGT00390000002957 ENSGT00550000074802 ENSGT00620000088063 ENSGT01090000260070.D.a ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000154317.a.b.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000163149.a.b.c.a.a ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 ENSGT00940000158213 #36 Pleuronectoidei ANCESTRAL SPECIES 46 ENSGT00390000002957 ENSGT00550000074802 ENSGT00620000088063 ENSGT01090000260070.D.a ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000154317.a.b.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 ENSGT00940000158213 #36 ENSGT00940000158473 Tongue sole MODERN SPECIES 17 ENSCSEG00000015948 ENSCSEG00000015949 smim8 (ENSCSEG00000015963) ddx51 (ENSCSEG00000015970) ENSCSEG00000015993 gopc (ENSCSEG00000016000) epha7 (ENSCSEG00000016445) ENSCSEG00000016856 GPR63 (ENSCSEG00000016860) ENSCSEG00000016864 dse (ENSCSEG00000016870) #17 nt5dc1 (ENSCSEG00000016880) #18 COL10A1 (ENSCSEG00000016899) FRK (ENSCSEG00000016944) #20 HS3ST5 (ENSCSEG00000016969) #21 HDAC2 (ENSCSEG00000016978) #22 marcksa (ENSCSEG00000016991) #23 ENSCSEG00000016997 ccn6 (ENSCSEG00000017034) #26 ENSCSEG00000017224 ENSCSEG00000017228 FYN (ENSCSEG00000017233) #27 ENSCSEG00000017248 ENSCSEG00000017263 REV3L (ENSCSEG00000017283) #29 mfsd4b (ENSCSEG00000017328) #30 rad51 (ENSCSEG00000017335) ENSCSEG00000017348 ENSCSEG00000017367 slc22a16 (ENSCSEG00000017379) #37 OSTM1 (ENSCSEG00000017408) Carangaria_A ANCESTRAL SPECIES 68 ENSGT00940000165360 ENSGT00550000074802 ENSGT00620000088063 ENSGT01090000260070.D.a ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000154317.a.b.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000163149.a.b.c.a.a ENSGT00940000179536 ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 Barramundi perch MODERN SPECIES 491 HS3ST5 (ENSLCAG00010022727) #21 HDAC2 (ENSLCAG00010022752) #22 marcksa (ENSLCAG00010022848) #23 ENSLCAG00010022850 Seriola ANCESTRAL SPECIES 4 ENSGT00940000165360 ENSGT00550000074802 ENSGT00620000088063 ENSGT01090000260070.D.a ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000154317.a.b.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000163149.a.b.c.a.a.e ENSGT00970000193381.a.b.b.c.a.a ENSGT00940000179536 ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 Yellowtail amberjack MODERN SPECIES 3194 GPR63 (ENSSLDG00000013274) NDUFAF4 (ENSSLDG00000013282) dse (ENSSLDG00000013289) #17 nt5dc1 (ENSSLDG00000013308) #18 COL10A1 (ENSSLDG00000013336) FRK (ENSSLDG00000013349) #20 HS3ST5 (ENSSLDG00000013370) #21 HDAC2 (ENSSLDG00000013387) #22 marcksa (ENSSLDG00000013404) #23 ENSSLDG00000013452 ENSSLDG00000013677 ENSSLDG00000013702 ENSSLDG00000013724 tube1 (ENSSLDG00000013782) #25 ccn6 (ENSSLDG00000013804) #26 ENSSLDG00000013830 fynb (ENSSLDG00000013902) #27 ENSSLDG00000013959 ENSSLDG00000013969 REV3L (ENSSLDG00000013985) #29 ENSSLDG00000014013 #29 mfsd4b (ENSSLDG00000014033) #30 Greater amberjack MODERN SPECIES 10 casp8ap2 (ENSSDUG00000009230) GJA10 (ENSSDUG00000009241) BACH2 (ENSSDUG00000009249) map3k7 (ENSSDUG00000009266) FLOT2 (ENSSDUG00000009326) ENSSDUG00000009336 epha7 (ENSSDUG00000009344) ufl1 (ENSSDUG00000009381) GPR63 (ENSSDUG00000009413) NDUFAF4 (ENSSDUG00000009417) dse (ENSSDUG00000009426) #17 nt5dc1 (ENSSDUG00000009437) #18 COL10A1 (ENSSDUG00000009465) FRK (ENSSDUG00000009469) #20 HS3ST5 (ENSSDUG00000009500) #21 HDAC2 (ENSSDUG00000009517) #22 marcksa (ENSSDUG00000009591) #23 ENSSDUG00000009595 ENSSDUG00000009617 ENSSDUG00000009721 ENSSDUG00000009730 ENSSDUG00000009762 tube1 (ENSSDUG00000010088) #25 ccn6 (ENSSDUG00000010183) #26 ENSSDUG00000010206 fynb (ENSSDUG00000010216) #27 ENSSDUG00000010246 ENSSDUG00000010254 REV3L (ENSSDUG00000010282) #29 mfsd4b (ENSSDUG00000010351) #30 slc16a10 (ENSSDUG00000010361) #31 Anabantaria ANCESTRAL SPECIES 20 ENSGT00940000165360 ENSGT00550000074802 ENSGT00620000088063 ENSGT01090000260070.D.a ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000154317.a.b.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000163149.a.b.c.a.a ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000164609.a ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 ENSGT00940000158213 #36 ENSGT00940000158473 Zig-zag eel MODERN SPECIES 16 GJA10 (ENSMAMG00000002566) BACH2 (ENSMAMG00000002574) map3k7 (ENSMAMG00000002593) ENSMAMG00000026462 ENSMAMG00000026311 ENSMAMG00000002973 UFL1 (ENSMAMG00000003053) nt5dc1 (ENSMAMG00000003150) #18 ENSMAMG00000003205 dse (ENSMAMG00000003223) #17 ENSMAMG00000026714 ENSMAMG00000003246 FRK (ENSMAMG00000003256) #20 ENSMAMG00000017188 ENSMAMG00000003312 #21 HDAC2 (ENSMAMG00000003340) #22 ENSMAMG00000027627 ENSMAMG00000024743 ENSMAMG00000003456 tube1 (ENSMAMG00000003851) #25 CCN6 (ENSMAMG00000003901) #26 ENSMAMG00000003930 FYN (ENSMAMG00000004025) #27 ENSMAMG00000004177 REV3L (ENSMAMG00000004205) #29 MFSD4B (ENSMAMG00000004230) #30 SLC16A10 (ENSMAMG00000004238) #31 ENSMAMG00000004260 RPF2 (ENSMAMG00000004267) #32 AMD1 (ENSMAMG00000004315) #34 CDK19 (ENSMAMG00000004350) #36 Anabantoidei ANCESTRAL SPECIES 15 ENSGT00940000156652 ENSGT00970000193844 ENSGT00620000088063 ENSGT01090000260070.D.a ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000154317.a.b.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000163149.a.b.c.a.a ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000164609.a ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 ENSGT00940000158213 #36 ENSGT00940000158473 Climbing perch MODERN SPECIES 15 ENSATEG00000011893 ANKRD6 (ENSATEG00000011880) ube2j1 (ENSATEG00000011911) ENSATEG00000011945 ENSATEG00000029697 ENSATEG00000025345 ENSATEG00000011991 ENSATEG00000012029 ENSATEG00000012063 ENSATEG00000029123 ENSATEG00000025202 #17 NT5DC1 (ENSATEG00000012105) #18 COL10A1 (ENSATEG00000012158) FRK (ENSATEG00000012166) #20 HS3ST5 (ENSATEG00000012220) #21 HDAC2 (ENSATEG00000012237) #22 MARCKS (ENSATEG00000012285) #23 ENSATEG00000012320 ENSATEG00000012450 ENSATEG00000012483 tube1 (ENSATEG00000027346) #25 CCN6 (ENSATEG00000012634) #26 ENSATEG00000012643 fynb (ENSATEG00000012659) #27 ENSATEG00000012723 REV3L (ENSATEG00000012750) #29 MFSD4B (ENSATEG00000012762) #30 SLC16A10 (ENSATEG00000012787) #31 RPF2 (ENSATEG00000012818) #32 AMD1 (ENSATEG00000012862) #34 CDK19 (ENSATEG00000012908) #36 Siamese fighting fish MODERN SPECIES 13 ENSBSLG00000025093 ENSBSLG00000025095 ENSBSLG00000025097 ENSBSLG00000025098 ENSBSLG00000005016 ENSBSLG00000005042 ENSBSLG00000005071 ENSBSLG00000005119 ENSBSLG00000005162 ENSBSLG00000005196 ENSBSLG00000005224 ENSBSLG00000005281 ENSBSLG00000005288 ENSBSLG00000005336 HS3ST5 (ENSBSLG00000005352) #21 HDAC2 (ENSBSLG00000005462) #22 marcksa (ENSBSLG00000006049) #23 ENSBSLG00000006052 ENSBSLG00000006721 tube1 (ENSBSLG00000007764) #25 ccn6 (ENSBSLG00000007838) #26 ENSBSLG00000007855 ENSBSLG00000007895 fynb (ENSBSLG00000007983) #27 ENSBSLG00000008906 REV3L (ENSBSLG00000009005) #29 mfsd4b (ENSBSLG00000009204) #30 ENSBSLG00000009211 slc16a10 (ENSBSLG00000009218) #31 rpf2 (ENSBSLG00000009242) #32 amd1 (ENSBSLG00000009716) #34 Protacanthopterygii ANCESTRAL SPECIES 33 ENSGT00550000074802 ENSGT00620000088063 ENSGT01090000260070.D.a ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00940000155095.j ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000154317.a.b.b ENSGT00940000156987.i #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00990000210177.a ENSGT00730000111419.a #23 ENSGT00940000165424.b ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.a ENSGT00940000155462.`b.b #27 ENSGT00940000170563 ENSGT00940000164609.a ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00390000011776 #34 ENSGT00940000158213 #36 Northern pike MODERN SPECIES 17 MDN1 (ENSELUG00000027898) ENSELUG00000017413 casp8ap2 (ENSELUG00000017451) GJA10 (ENSELUG00000000676) BACH2 (ENSELUG00000017489) map3k7 (ENSELUG00000017538) epha7 (ENSELUG00000017596) ufl1 (ENSELUG00000017701) GPR63 (ENSELUG00000017719) NDUFAF4 (ENSELUG00000033989) dse (ENSELUG00000017742) #17 nt5dc1 (ENSELUG00000017780) #18 COL10A1 (ENSELUG00000031539) FRK (ENSELUG00000017840) #20 HS3ST5 (ENSELUG00000017858) #21 HDAC2 (ENSELUG00000017897) #22 marcksa (ENSELUG00000031360) #23 ENSELUG00000018005 tube1 (ENSELUG00000018051) #25 ccn6 (ENSELUG00000000755) #26 si:dkey-119m7.4 (ENSELUG00000000742) fynb (ENSELUG00000018218) #27 ENSELUG00000018244 ENSELUG00000018263 REV3L (ENSELUG00000000782) #29 ENSELUG00000027505 mfsd4b (ENSELUG00000018422) #30 slc16a10 (ENSELUG00000018431) #31 rpf2 (ENSELUG00000018518) #32 amd1 (ENSELUG00000018585) #34 CDK19 (ENSELUG00000000797) #36 Salmoninae ANCESTRAL SPECIES 177 ENSGT00620000088063.i.a ENSGT01090000260070.D.a.c ENSGT00940000158228.a.q ENSGT00940000157785.f.a ENSGT00940000167164.g ENSGT00940000155095.j ENSGT00390000002112.e ENSGT00950000183001.a.b.a.c ENSGT00390000001627.k ENSGT00390000006522.b.k #17 ENSGT00940000154317.a.b.b.f ENSGT00940000155676.b #18 ENSGT00940000156987.i.a #20 ENSGT00940000158991.a #21 ENSGT00940000163852.c.a.b.b.a.b ENSGT00940000155725 #22 ENSGT00990000210177.a ENSGT00730000111419.a.a #23 ENSGT00940000159970 #24 ENSGT00940000165424.b.a ENSGT00940000155723.o #25 ENSGT00940000160119.n #26 ENSGT00940000164843.b.e.b ENSGT00940000155462.`b.b.c.b #27 ENSGT00940000164609.a ENSGT00940000156226.r.a #29 ENSGT00530000063320.B.g #30 ENSGT00940000157966.r #31 ENSGT00390000007279.bb #32 ENSGT00390000011776.pc.a #34 ENSGT00940000158213.l.a #36 Salmoninae_a ANCESTRAL SPECIES 23 ENSGT00620000088063.i.a ENSGT01090000260070.D.a.c ENSGT00940000158228.a.q ENSGT00940000157785.f.a ENSGT00940000167164.g ENSGT00940000155095.j ENSGT00390000002112.e ENSGT00950000183001.a.b.a.c ENSGT00390000001627.k ENSGT00390000006522.b.k #17 ENSGT00940000155676.b #18 ENSGT00940000154317.a.b.b.f ENSGT00940000156987.i.a #20 ENSGT00940000158991.a #21 ENSGT00940000163852.c.a.b.b.a.b ENSGT00940000155725 #22 ENSGT00990000210177.a ENSGT00730000111419.a.a #23 ENSGT00940000165424.b.a ENSGT00940000155723.o #25 ENSGT00940000160119.n #26 ENSGT00940000164843.b.e.b ENSGT00940000155462.`b.b.c.b #27 ENSGT00940000164609.a ENSGT00940000156226.r.a #29 ENSGT00530000063320.B.g #30 ENSGT00940000157966.r #31 ENSGT00390000007279.bb #32 ENSGT00390000011776.pc.a #34 ENSGT00940000158213.l.a #36 ENSGT00940000158473.f Salmo ANCESTRAL SPECIES 12 ENSGT00620000088063.i.a ENSGT01090000260070.D.a.c ENSGT00940000158228.a.q ENSGT00940000157785.f.a ENSGT00940000167164.g ENSGT00940000155095.j ENSGT00390000002112.e ENSGT00950000183001.a.b.a.c ENSGT00390000001627.k ENSGT00390000006522.b.k #17 ENSGT00940000155676.b #18 ENSGT00940000154317.a.b.b.f ENSGT00940000156987.i.a #20 ENSGT00940000158991.a #21 ENSGT00940000163852.c.a.b.b.a.b ENSGT00940000155725 #22 ENSGT00990000210177.a ENSGT00730000111419.a.a #23 ENSGT00940000165424.b.a ENSGT00940000155723.o #25 ENSGT00940000160119.n #26 ENSGT00940000164843.b.e.b ENSGT00940000155462.`b.b.c.b #27 ENSGT00940000164609.a ENSGT00940000156226.r.a #29 ENSGT00530000063320.B.g #30 ENSGT00940000157966.r #31 ENSGT00390000007279.bb #32 ENSGT00390000011776.pc.a #34 ENSGT00940000158213.l.a #36 ENSGT00940000158473.f River trout MODERN SPECIES BACH2 (ENSSTUG00000045344) map3k7 (ENSSTUG00000044998) ENSSTUG00000044968 epha7 (ENSSTUG00000041233) FUT9 (ENSSTUG00000041026) ufl1 (ENSSTUG00000040704) GPR63 (ENSSTUG00000040654) ENSSTUG00000040642 ENSSTUG00000040628 dse (ENSSTUG00000040602) #17 COL10A1 (ENSSTUG00000040594) nt5dc1 (ENSSTUG00000040413) #18 FRK (ENSSTUG00000040342) #20 HS3ST5 (ENSSTUG00000040332) #21 ENSSTUG00000040319 HDAC2 (ENSSTUG00000039924) #22 ENSSTUG00000039905 marcksa (ENSSTUG00000039897) #23 ENSSTUG00000039011 TUBE1 (ENSSTUG00000038960) #25 ccn6 (ENSSTUG00000038945) #26 ENSSTUG00000038930 fynb (ENSSTUG00000037621) #27 ENSSTUG00000037565 REV3L (ENSSTUG00000036803) #29 mfsd4b (ENSSTUG00000036775) #30 slc16a10 (ENSSTUG00000036755) #31 rpf2 (ENSSTUG00000036645) #32 amd1 (ENSSTUG00000036575) #34 CDK19 (ENSSTUG00000035363) #36 tab2 (ENSSTUG00000035293) Atlantic salmon MODERN SPECIES 25 GJA10 (ENSSSAG00000042422) BACH2 (ENSSSAG00000042426) map3k7 (ENSSSAG00000042466) ENSSSAG00000118879 epha7 (ENSSSAG00000053507) FUT9 (ENSSSAG00000104394) ufl1 (ENSSSAG00000054425) GPR63 (ENSSSAG00000054512) NDUFAF4 (ENSSSAG00000105786) ENSSSAG00000054520 #17 NT5DC1 (ENSSSAG00000054551) #18 COL10A1 (ENSSSAG00000067854) FRK (ENSSSAG00000054820) #20 HS3ST5 (ENSSSAG00000098424) #21 ENSSSAG00000054837 hdac2 (ENSSSAG00000054858) #22 MARCS (ENSSSAG00000054925) #23 ENSSSAG00000095441 ENSSSAG00000055127 tube1 (ENSSSAG00000064333) #25 wisp3 (ENSSSAG00000064347) #26 ENSSSAG00000064350 ENSSSAG00000097403 fynb (ENSSSAG00000064455) #27 ENSSSAG00000116387 REV3L (ENSSSAG00000068767) #29 MFSD4B (ENSSSAG00000112966) #30 SLC16A10 (ENSSSAG00000069872) #31 RPF2 (ENSSSAG00000069892) #32 dcam (ENSSSAG00000069943) #34 CDK19 (ENSSSAG00000069958) #36 Oncorhynchus ANCESTRAL SPECIES 25 ENSGT00620000088063.i.a ENSGT01090000260070.D.a.c ENSGT00940000158228.a.q ENSGT00940000157785.f.a ENSGT00940000167164.g ENSGT00940000155095.j ENSGT00390000002112.e ENSGT00950000183001.a.b.a.c ENSGT00390000001627.k ENSGT00390000006522.b.k #17 ENSGT00940000155676.b #18 ENSGT00940000154317.a.b.b.f ENSGT00940000156987.i.a #20 ENSGT00940000158991.a #21 ENSGT00940000163852.c.a.b.b.a.b ENSGT00940000155725 #22 ENSGT00990000210177.a ENSGT00730000111419.a.a #23 ENSGT00940000165424.b.a ENSGT00940000155723.o #25 ENSGT00940000160119.n #26 ENSGT00940000164843.b.e.b ENSGT00940000155462.`b.b.c.b #27 ENSGT00940000164609.a ENSGT00940000156226.r.a #29 ENSGT00530000063320.B.g #30 ENSGT00940000157966.r #31 ENSGT00390000007279.bb #32 ENSGT00390000011776.pc.a #34 ENSGT00940000158213.l.a #36 ENSGT00940000158473.f Oncorhynchus_a ANCESTRAL SPECIES 17 ENSGT00620000088063.i.a ENSGT01090000260070.D.a.c ENSGT00940000158228.a.q ENSGT00940000157785.f.a ENSGT00940000167164.g ENSGT00940000155095.j ENSGT00390000002112.e ENSGT00950000183001.a.b.a.c ENSGT00390000001627.k ENSGT00390000006522.b.k #17 ENSGT00940000155676.b #18 ENSGT00940000154317.a.b.b.f ENSGT00940000156987.i.a #20 ENSGT00940000158991.a #21 ENSGT00940000163852.c.a.b.b.a.b ENSGT00940000155725 #22 ENSGT00990000210177.a ENSGT00730000111419.a.a #23 ENSGT00940000165424.b.a ENSGT00940000155723.o #25 ENSGT00940000160119.n #26 ENSGT00940000164843.b.e.b ENSGT00940000155462.`b.b.c.b #27 ENSGT00940000164609.a ENSGT00940000156226.r.a #29 ENSGT00530000063320.B.g #30 ENSGT00940000157966.r #31 ENSGT00390000007279.bb #32 ENSGT00390000011776.pc.a #34 ENSGT00940000158213.l.a #36 ENSGT00940000158473.f Chinook salmon MODERN SPECIES 9 ENSOTSG00005022532 GJA10 (ENSOTSG00005022534) BACH2 (ENSOTSG00005022536) MAP3K7 (ENSOTSG00005022541) epha7 (ENSOTSG00005026547) FUT9 (ENSOTSG00005031416) ufl1 (ENSOTSG00005031418) GPR63 (ENSOTSG00005031422) NDUFAF4 (ENSOTSG00005031423) dse (ENSOTSG00005031424) #17 nt5dc1 (ENSOTSG00005031425) #18 COL10A1 (ENSOTSG00005031427) FRK (ENSOTSG00005031428) #20 HS3ST5 (ENSOTSG00005031429) #21 ENSOTSG00005031430 HDAC2 (ENSOTSG00005031434) #22 ENSOTSG00005031498 marcksa (ENSOTSG00005031499) #23 ENSOTSG00005014712 TUBE1 (ENSOTSG00005016405) #25 ccn6 (ENSOTSG00005016407) #26 ENSOTSG00005016408 fynb (ENSOTSG00005016411) #27 ENSOTSG00005016476 REV3L (ENSOTSG00005016492) #29 mfsd4b (ENSOTSG00005016711) #30 slc16a10 (ENSOTSG00005016712) #31 rpf2 (ENSOTSG00005016714) #32 amd1 (ENSOTSG00005016873) #34 CDK19 (ENSOTSG00005016890) #36 tab2 (ENSOTSG00005020633) Coho salmon MODERN SPECIES 13 GJA10 (ENSOKIG00005009073) BACH2 (ENSOKIG00005009082) MAP3K7 (ENSOKIG00005009130) ENSOKIG00005009845 epha7 (ENSOKIG00005009967) FUT9 (ENSOKIG00005012375) ufl1 (ENSOKIG00005012399) GPR63 (ENSOKIG00005012498) NDUFAF4 (ENSOKIG00005012503) dse (ENSOKIG00005012509) #17 NT5DC1 (ENSOKIG00005012518) #18 COL10A1 (ENSOKIG00005012546) FRK (ENSOKIG00005012555) #20 HS3ST5 (ENSOKIG00005012601) #21 ENSOKIG00005012611 HDAC2 (ENSOKIG00005012676) #22 MARCKS (ENSOKIG00005012852) #23 ENSOKIG00005013012 TUBE1 (ENSOKIG00005016622) #25 ccn6 (ENSOKIG00005016640) #26 ENSOKIG00005016645 fynb (ENSOKIG00005016693) #27 ENSOKIG00005017425 REV3L (ENSOKIG00005017495) #29 mfsd4b (ENSOKIG00005018318) #30 slc16a10 (ENSOKIG00005018323) #31 rpf2 (ENSOKIG00005018336) #32 amd1 (ENSOKIG00005018566) #34 CDK19 (ENSOKIG00005018764) #36 tab2 (ENSOKIG00005019135) ENSOKIG00005019157 Rainbow trout MODERN SPECIES 25 map3k7 (ENSOMYG00000002862) epha7 (ENSOMYG00000005599) FUT9 (ENSOMYG00000007255) ufl1 (ENSOMYG00000007400) GPR63 (ENSOMYG00000007470) NDUFAF4 (ENSOMYG00000007528) ENSOMYG00000007741 #17 NT5DC1 (ENSOMYG00000067754) #18 COL10A1 (ENSOMYG00000007882) FRK (ENSOMYG00000007944) #20 HS3ST5 (ENSOMYG00000074544) #21 ENSOMYG00000008155 ENSOMYG00000057248 ENSOMYG00000049534 ENSOMYG00000002830 HDAC2 (ENSOMYG00000008291) #22 MARCKS (ENSOMYG00000008352) #23 ENSOMYG00000008552 tube1 (ENSOMYG00000008799) #25 ccn6 (ENSOMYG00000008875) #26 ENSOMYG00000008914 ENSOMYG00000039518 fynb (ENSOMYG00000009496) #27 ENSOMYG00000011754 REV3L (ENSOMYG00000011789) #29 MFSD4B (ENSOMYG00000011849) #30 SLC16A10 (ENSOMYG00000011857) #31 RPF2 (ENSOMYG00000011893) #32 AMD1 (ENSOMYG00000011957) #34 CDK19 (ENSOMYG00000012079) #36 TAB2 (ENSOMYG00000012925) Huchen DUPLICATION Huchen MODERN SPECIES 5 casp8ap2 (ENSHHUG00000029503) GJA10 (ENSHHUG00000029497) BACH2 (ENSHHUG00000029484) map3k7 (ENSHHUG00000029318) epha7 (ENSHHUG00000028944) FUT9 (ENSHHUG00000028934) ufl1 (ENSHHUG00000028927) GPR63 (ENSHHUG00000028925) NDUFAF4 (ENSHHUG00000028921) dse (ENSHHUG00000028917) #17 COL10A1 (ENSHHUG00000028914) nt5dc1 (ENSHHUG00000028909) #18 FRK (ENSHHUG00000028896) #20 HS3ST5 (ENSHHUG00000028890) #21 ENSHHUG00000028874 ENSHHUG00000028196 #22 marcksa (ENSHHUG00000028185) #23 ENSHHUG00000028148 LAMA4 (ENSHHUG00000028112) #24 tube1 (ENSHHUG00000028059) #25 ccn6 (ENSHHUG00000028046) #26 ENSHHUG00000028022 fynb (ENSHHUG00000026547) #27 ENSHHUG00000026535 REV3L (ENSHHUG00000026525) #29 mfsd4b (ENSHHUG00000026518) #30 slc16a10 (ENSHHUG00000026517) #31 rpf2 (ENSHHUG00000026475) #32 amd1 (ENSHHUG00000026419) #34 CDK19 (ENSHHUG00000026211) #36 tab2 (ENSHHUG00000026194) Huchen DUPLICATION Huchen MODERN SPECIES 4146 marcksl1b (ENSHHUG00000029814) ENSHHUG00000029799 #22 ENSHHUG00000029796 #22 Huchen MODERN SPECIES 4146 marcksl1b (ENSHHUG00000029814) ENSHHUG00000029799 #22 ENSHHUG00000029796 #22 Otomorpha ANCESTRAL SPECIES 177 ENSGT01030000235133.d.b ENSGT01090000260070.D.a ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00940000155095.j ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000154317.a.b.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT01030000234896 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000165424.a.a ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.b ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000170463 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 Otophysi ANCESTRAL SPECIES 55 ENSGT00940000155095.j ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000154317.a.b.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000165424.a.a ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000164843.b ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000170463 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00940000166728 ENSGT00390000011674 Characiphysae ANCESTRAL SPECIES 145 ENSGT00940000155095.j ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000154317.a.b.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000165424.a.a ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000170463 ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00940000166728 ENSGT00390000011674 ENSGT00980000199126 Channel catfish MODERN SPECIES 11 ENSIPUG00000001755 ENSIPUG00000001750 ENSIPUG00000001744 ENSIPUG00000001739 ENSIPUG00000001717 ENSIPUG00000001707 ufl1 (ENSIPUG00000001690) ENSIPUG00000001678 gpr63 (ENSIPUG00000001674) ndufaf4 (ENSIPUG00000001666) dse (ENSIPUG00000001662) #17 COL10A1 (ENSIPUG00000001660) nt5dc1 (ENSIPUG00000001644) #18 FRK (ENSIPUG00000001638) #20 HS3ST5 (ENSIPUG00000001627) #21 HDAC2 (ENSIPUG00000001578) #22 marcks (ENSIPUG00000001623) #23 ENSIPUG00000001565 wdr26b (ENSIPUG00000001516) ENSIPUG00000001502 fez2b (ENSIPUG00000016554) ENSIPUG00000016540 fynb (ENSIPUG00000016461) #27 traf3ip2 (ENSIPUG00000016433) ENSIPUG00000016425 ENSIPUG00000016406 #29 mfsd4b (ENSIPUG00000016388) #30 rpf2 (ENSIPUG00000016288) #32 ENSIPUG00000016256 slc16a10 (ENSIPUG00000016216) #31 smim8 (ENSIPUG00000016194) Characiphysae_b ANCESTRAL SPECIES 97 ENSGT00940000155095.j ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000154317.a.b.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000165424.a.a ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00940000166728 ENSGT00390000011674 ENSGT00980000199126 ENSGT01030000234513.A.a.b Characoidei ANCESTRAL SPECIES 89 ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000155676 #18 ENSGT00940000154317.a.b.b ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000165424.a.a ENSGT00940000155723 #25 ENSGT00940000160119 #26 ENSGT00940000155462.`b.b #27 ENSGT00940000166133 ENSGT00940000164609.a ENSGT00940000156226 #29 ENSGT00530000063320.B #30 ENSGT00940000157966 #31 ENSGT00390000007279 #32 ENSGT00940000166728 ENSGT00390000011674 ENSGT01030000234513.A.a.b ENSGT00950000183034.C.a.a Red-bellied piranha MODERN SPECIES 2128 ENSPNAG00000019553 #22 Mexicana tetra MODERN SPECIES 18 gja2 (ENSAMXG00000004785) tbc1d8b (ENSAMXG00000004784) rnf128a (ENSAMXG00000004783) ENSAMXG00000004781 ercc6l (ENSAMXG00000004780) ufl1 (ENSAMXG00000031423) GPR63 (ENSAMXG00000025575) ENSAMXG00000044045 dse (ENSAMXG00000003932) #17 nt5dc1 (ENSAMXG00000003910) #18 ENSAMXG00000035187 ENSAMXG00000032943 FRK (ENSAMXG00000034064) #20 FRK (ENSAMXG00000041389) #20 HS3ST5 (ENSAMXG00000014338) #21 HDAC2 (ENSAMXG00000014325) #22 ENSAMXG00000032323 marcksa (ENSAMXG00000034538) #23 lama4 (ENSAMXG00000014261) ENSAMXG00000030992 tube1 (ENSAMXG00000014226) #25 ccn6 (ENSAMXG00000042271) #26 si:dkey-119m7.4 (ENSAMXG00000033550) fynb (ENSAMXG00000014156) #27 ENSAMXG00000042483 ENSAMXG00000014116 REV3L (ENSAMXG00000014096) #29 ENSAMXG00000041163 mfsd4b (ENSAMXG00000014083) #30 slc16a10 (ENSAMXG00000014059) #31 rpf2 (ENSAMXG00000035201) #32 Electric eel MODERN SPECIES 857 FUT9 (ENSEEEG00000005478) ufl1 (ENSEEEG00000005485) GPR63 (ENSEEEG00000005497) NDUFAF4 (ENSEEEG00000005498) dse (ENSEEEG00000005499) #17 nt5dc1 (ENSEEEG00000005502) #18 ENSEEEG00000005503 FRK (ENSEEEG00000005550) #20 HS3ST5 (ENSEEEG00000005891) #21 HDAC2 (ENSEEEG00000005962) #22 marcksa (ENSEEEG00000006927) #23 Clupeiformes ANCESTRAL SPECIES 206 ENSGT01030000235133.d.b ENSGT01090000260070.D.a ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000167164 ENSGT00940000155095.j ENSGT00390000002112 ENSGT00950000183001.a.b.a ENSGT00390000001627 ENSGT00390000006522.b #17 ENSGT00940000154317.a.b.b ENSGT00940000155676 #18 ENSGT00940000156987 #20 ENSGT00940000158991 #21 ENSGT01030000234896 ENSGT00940000155725 #22 ENSGT00730000111419.a #23 ENSGT00940000165424.a.a ENSGT00940000155723 #25 ENSGT00940000160119 #26 Atlantic herring MODERN SPECIES 6 ost4 (ENSCHAG00000008266) agbl5 (ENSCHAG00000008277) ENSCHAG00000008357 ENSCHAG00000008368 igf2r (ENSCHAG00000008669) rfx6 (ENSCHAG00000015993) vgll2a (ENSCHAG00000016093) dcbld1 (ENSCHAG00000016111) gopc (ENSCHAG00000016119) rpf2 (ENSCHAG00000016229) #32 slc16a10 (ENSCHAG00000016384) #31 mfsd4b (ENSCHAG00000016397) #30 REV3L (ENSCHAG00000016422) #29 ENSCHAG00000016494 fynb (ENSCHAG00000016571) #27 HDAC2 (ENSCHAG00000018215) #22 marcksa (ENSCHAG00000018501) #23 lama4 (ENSCHAG00000018566) tube1 (ENSCHAG00000020558) #25 ccn6 (ENSCHAG00000020693) #26 HS3ST5 (ENSCHAG00000020819) #21 FRK (ENSCHAG00000020829) #20 nt5dc1 (ENSCHAG00000020849) #18 COL10A1 (ENSCHAG00000021020) dse (ENSCHAG00000021023) #17 NDUFAF4 (ENSCHAG00000021029) GPR63 (ENSCHAG00000021032) ufl1 (ENSCHAG00000021051) FUT9 (ENSCHAG00000021372) epha7 (ENSCHAG00000021393) map3k7 (ENSCHAG00000021765) Denticle herring MODERN SPECIES 5 ENSDCDG00000021045 FUT9 (ENSDCDG00000021050) ufl1 (ENSDCDG00000021056) GPR63 (ENSDCDG00000021082) NDUFAF4 (ENSDCDG00000021083) ENSDCDG00000021085 ENSDCDG00000021087 ENSDCDG00000021089 ENSDCDG00000021096 dse (ENSDCDG00000021102) #17 nt5dc1 (ENSDCDG00000021105) #18 COL10A1 (ENSDCDG00000021132) FRK (ENSDCDG00000021133) #20 HS3ST5 (ENSDCDG00000021138) #21 ENSDCDG00000021140 HDAC2 (ENSDCDG00000021144) #22 marcksa (ENSDCDG00000021180) #23 lama4 (ENSDCDG00000021226) tube1 (ENSDCDG00000023526) #25 ccn6 (ENSDCDG00000023599) #26 fynb (ENSDCDG00000023745) #27 ENSDCDG00000028298 ENSDCDG00000028299 REV3L (ENSDCDG00000028303) #29 mfsd4b (ENSDCDG00000028307) #30 slc16a10 (ENSDCDG00000028308) #31 rpf2 (ENSDCDG00000028309) #32 gopc (ENSDCDG00000028313) dcbld1 (ENSDCDG00000028340) vgll2a (ENSDCDG00000028341) rfx6 (ENSDCDG00000028342) Elephant shark DUPLICATION Elephant shark MODERN SPECIES 1606 ENSCMIG00000015414 ENSCMIG00000015413 ENSCMIG00000015411 ENSCMIG00000015410 zbtb8os (ENSCMIG00000015408) ENSCMIG00000015406 ENSCMIG00000015404 ENSCMIG00000015403 tmem234 (ENSCMIG00000015402) eif3i (ENSCMIG00000015400) ENSCMIG00000015396 zgc:154055 (ENSCMIG00000015394) FAM167B (ENSCMIG00000015393) lck (ENSCMIG00000014823) ENSCMIG00000014609 ENSCMIG00000014585 #22 ENSCMIG00000014579 ENSCMIG00000014578 TSSK3 (ENSCMIG00000014577) bsdc1 (ENSCMIG00000014564) ENSCMIG00000014559 ENSCMIG00000014556 ENSCMIG00000014550 ENSCMIG00000014548 rbbp4 (ENSCMIG00000014507) ccdc28b (ENSCMIG00000014489) txlna (ENSCMIG00000014423) KPNA6 (ENSCMIG00000014390) tmem39b (ENSCMIG00000014380) rnf19b (ENSCMIG00000014362) ak2 (ENSCMIG00000014356) Elephant shark MODERN SPECIES 1556 ENSCMIG00000004541 #11 ENSCMIG00000004556 #11 ENSCMIG00000004561 #11 rwdd1 (ENSCMIG00000004566) #13 CALHM4 (ENSCMIG00000004572) ##16 ENSCMIG00000004589 #15 calhm6 (ENSCMIG00000004602) #16 dse (ENSCMIG00000004605) #17 nt5dc1 (ENSCMIG00000004627) #18 ENSCMIG00000004696 ENSCMIG00000004781 #20 ENSCMIG00000004784 HS3ST5 (ENSCMIG00000004787) #21 ENSCMIG00000004990 #22 marcksa (ENSCMIG00000005799) #23 LAMA4 (ENSCMIG00000005945) #24 ENSCMIG00000006232 tube1 (ENSCMIG00000006239) #25 CCN6 (ENSCMIG00000006259) #26 rfx6 (ENSCMIG00000006276) vgll2a (ENSCMIG00000006277) ENSCMIG00000006280 ENSCMIG00000006285 ENSCMIG00000006288 gopc (ENSCMIG00000006289) ENSCMIG00000006291 ENSCMIG00000006292 nus1 (ENSCMIG00000006296) SLC35F1 (ENSCMIG00000006299) Cyclostomata ANCESTRAL SPECIES ENSGT00940000155725 #22 Hagfish MODERN SPECIES 788 ENSEBUG00000000706 ENSEBUG00000000525 ENSEBUG00000001606 tyms (ENSEBUG00000016751) ENSEBUG00000016471 arfrp1 (ENSEBUG00000013459) HDAC2 (ENSEBUG00000007399) #22 ENSEBUG00000013388 #20 ENSEBUG00000016059 ENSEBUG00000006000 ENSEBUG00000006119 TNPO1 (ENSEBUG00000001895) ENSEBUG00000014409 ENSEBUG00000014884 skp1 (ENSEBUG00000011744) ENSEBUG00000007307 Ciona ANCESTRAL SPECIES ENSGT00940000155725 #22 Ciona intestinalis MODERN SPECIES ENSCING00000024256 ENSCING00000002704 ENSCING00000024821 ENSCING00000018593 ENSCING00000021241 ENSCING00000018296 ENSCING00000002678 ENSCING00000002691 ENSCING00000023726 ENSCING00000002697 ENSCING00000013814 ENSCING00000002663 ENSCING00000018604 ENSCING00000023285 ENSCING00000013815 ENSCING00000002649 #22 ENSCING00000021051 ENSCING00000017972 ENSCING00000023246 ENSCING00000013816 ENSCING00000013817 ENSCING00000013818 ENSCING00000003233 ENSCING00000002625 ENSCING00000002622 ENSCING00000021791 ENSCING00000002614 ENSCING00000002610 ENSCING00000013819 ENSCING00000013820 ENSCING00000015973 Ciona savignyi MODERN SPECIES 164 ENSCSAVG00000010670 ENSCSAVG00000010671 ENSCSAVG00000010673 ENSCSAVG00000010674 ENSCSAVG00000010675 ENSCSAVG00000010679 ENSCSAVG00000010680 ENSCSAVG00000010684 ENSCSAVG00000010687 ENSCSAVG00000010689 ENSCSAVG00000010695 ENSCSAVG00000010699 ENSCSAVG00000010702 ENSCSAVG00000010705 ENSCSAVG00000010710 ENSCSAVG00000010712 #22 ENSCSAVG00000010766 ENSCSAVG00000010767 ENSCSAVG00000010768 ENSCSAVG00000010774 ENSCSAVG00000010822 ENSCSAVG00000010824 ENSCSAVG00000010826 ENSCSAVG00000010828 ENSCSAVG00000010830 ENSCSAVG00000010832 ENSCSAVG00000010833 ENSCSAVG00000010834 ENSCSAVG00000010838 ENSCSAVG00000010841 ENSCSAVG00000010842 Ecdysozoa ANCESTRAL SPECIES ENSGT00940000155725 #22 Fruitfly MODERN SPECIES 18 CG11349 (FBgn0035550) CG7465 (FBgn0035551) CG11350 (FBgn0035552) CG13722 (FBgn0035553) CG13721 (FBgn0035554) CG13720 (FBgn0035555) NT1 (FBgn0261526) Tie (FBgn0014073) CG11353 (FBgn0035557) CG32243 (FBgn0052243) CG11357 (FBgn0035558) CG33777 (FBgn0053777) CG42540 (FBgn0260657) Src64B (FBgn0262733) CG32246 (FBgn0052246) HDAC1 (FBgn0015805) #22 axo (FBgn0262870) CG13716 (FBgn0035563) TTLL1B (FBgn0052238) CG32236 (FBgn0046793) CG34266 (FBgn0085295) CG7514 (FBgn0035567) CG18418 (FBgn0035568) RhoGEF64C (FBgn0035574) CG15876 (FBgn0035569) CG13713 (FBgn0042199) CG13712 (FBgn0035570) CG12493 (FBgn0035571) CG13711 (FBgn0035572) CG7509 (FBgn0035575) CG18808 (FBgn0042131)