Murinae	ANCESTRAL SPECIES	17	ENSGT01100000263809	ENSGT00940000155402.a.b #8	ENSGT01030000234626.D #9	ENSGT00940000159394 #10	ENSGT00950000183010.a.b.a.b.b.b #11	ENSGT00390000018741 #12	ENSGT00390000008772 #13	ENSGT00940000159872 #14	ENSGT00940000153432.A.b #15	ENSGT00940000159814 #16	ENSGT00940000153499.a #17	ENSGT00940000160474 #18	ENSGT00510000047648 #19	ENSGT00940000155805 #20	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #24	ENSGT00390000018830 #25	ENSGT00940000156997 #26	ENSGT00390000016167 #27	ENSGT00390000006029 #28	ENSGT00550000074846 #29	ENSGT00940000158788 #30	ENSGT00390000007354 #31	ENSGT01080000257333.E.o.a #32	ENSGT00390000018729.a.a #33	ENSGT00390000018729.a.b #34	ENSGT00940000158784 #36	ENSGT00950000183211.a.b #37	ENSGT00530000063631.a	ENSGT00390000011362
Mus	ANCESTRAL SPECIES	19	ENSGT01100000263809	ENSGT00940000155402.a.b #8	ENSGT01030000234626.D #9	ENSGT00940000159394 #10	ENSGT00950000183010.a.b.a.b.b.b #11	ENSGT00390000018741 #12	ENSGT00390000008772 #13	ENSGT00940000159872 #14	ENSGT00940000153432.A.b #15	ENSGT00940000159814 #16	ENSGT00940000153499.a #17	ENSGT00940000160474 #18	ENSGT00510000047648.c #19	ENSGT00940000155805 #20	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #24	ENSGT00390000018830 #25	ENSGT00940000156997 #26	ENSGT00390000016167 #27	ENSGT00390000006029 #28	ENSGT00550000074846 #29	ENSGT00940000158788 #30	ENSGT00390000007354 #31	ENSGT01080000257333.E.o.a #32	ENSGT00390000018729.a.a #33	ENSGT00390000018729.a.b #34	ENSGT00940000158784 #36	ENSGT00950000183211.a.b #37	ENSGT00530000063631.a	ENSGT00390000011362
Shrew mouse	MODERN SPECIES	6	Cfap53 (MGP_PahariEiJ_G0019129) #7	Myo5b (MGP_PahariEiJ_G0019130) #8	Acaa2 (MGP_PahariEiJ_G0019131) #9	Lipg (MGP_PahariEiJ_G0019132) #10	Rpl17 (MGP_PahariEiJ_G0019133) #11	BC031181 (MGP_PahariEiJ_G0019134) #12	Dym (MGP_PahariEiJ_G0019135) #13	Smad7 (MGP_PahariEiJ_G0019136) #14	Ctif (MGP_PahariEiJ_G0019137) #15	Zbtb7c (MGP_PahariEiJ_G0019138) #16	Smad2 (MGP_PahariEiJ_G0019139) #17	Skor2 (MGP_PahariEiJ_G0019140) #18	MGP_PahariEiJ_G0019141 #19	Hdhd2 (MGP_PahariEiJ_G0019142) #20	Katnal2 (MGP_PahariEiJ_G0019143) #21	Pias2 (MGP_PahariEiJ_G0019144) #22	MGP_PahariEiJ_G0019145 #23	St8sia5 (MGP_PahariEiJ_G0019146) #24	MGP_PahariEiJ_G0019147 #25	Rnf165 (MGP_PahariEiJ_G0019148) #26	8030462N17Rik (MGP_PahariEiJ_G0019149) #27	Haus1 (MGP_PahariEiJ_G0019150) #28	Atp5a1 (MGP_PahariEiJ_G0019151) #29	Pstpip2 (MGP_PahariEiJ_G0019152) #30	Epg5 (MGP_PahariEiJ_G0019153) #31	Siglec15 (MGP_PahariEiJ_G0019154) #32	Slc14a1 (MGP_PahariEiJ_G0019155) #33	Slc14a2 (MGP_PahariEiJ_G0019156) #34	MGP_PahariEiJ_G0019157 #35	Setbp1 (MGP_PahariEiJ_G0019158) #36	Pard6g (MGP_PahariEiJ_G0019159) #37
Mus_A	ANCESTRAL SPECIES	19	ENSGT01100000263809	ENSGT00940000155402.a.b #8	ENSGT01030000234626.D #9	ENSGT00940000159394 #10	ENSGT00950000183010.a.b.a.b.b.b #11	ENSGT00390000018741 #12	ENSGT00390000008772 #13	ENSGT00940000159872 #14	ENSGT00940000153432.A.b #15	ENSGT00940000159814 #16	ENSGT00940000153499.a #17	ENSGT00940000160474 #18	ENSGT00510000047648.c #19	ENSGT00940000155805 #20	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #24	ENSGT00390000018830 #25	ENSGT00940000156997 #26	ENSGT00390000016167 #27	ENSGT00390000006029 #28	ENSGT00550000074846 #29	ENSGT00940000158788 #30	ENSGT00390000007354 #31	ENSGT01080000257333.E.o.a #32	ENSGT00390000018729.a.a #33	ENSGT00390000018729.a.b #34	ENSGT00940000158784 #36	ENSGT00950000183211.a.b #37	ENSGT01100000265037	ENSGT00530000063631.a
Ryukyu mouse	MODERN SPECIES	9	Cfap53 (MGP_CAROLIEiJ_G0022400) #7	Myo5b (MGP_CAROLIEiJ_G0022401) #8	Acaa2 (MGP_CAROLIEiJ_G0022402) #9	Lipg (MGP_CAROLIEiJ_G0022403) #10	Rpl17 (MGP_CAROLIEiJ_G0022404) #11	BC031181 (MGP_CAROLIEiJ_G0022405) #12	Dym (MGP_CAROLIEiJ_G0022406) #13	Smad7 (MGP_CAROLIEiJ_G0022407) #14	Ctif (MGP_CAROLIEiJ_G0022408) #15	Zbtb7c (MGP_CAROLIEiJ_G0022409) #16	Smad2 (MGP_CAROLIEiJ_G0022410) #17	Skor2 (MGP_CAROLIEiJ_G0022411) #18	MGP_CAROLIEiJ_G0022412 #19	Hdhd2 (MGP_CAROLIEiJ_G0022413) #20	Katnal2 (MGP_CAROLIEiJ_G0022414) #21	Pias2 (MGP_CAROLIEiJ_G0022415) #22	MGP_CAROLIEiJ_G0022416	St8sia5 (MGP_CAROLIEiJ_G0022417) #24	Loxhd1 (MGP_CAROLIEiJ_G0022418) #25	Rnf165 (MGP_CAROLIEiJ_G0022419) #26	8030462N17Rik (MGP_CAROLIEiJ_G0022420) #27	Haus1 (MGP_CAROLIEiJ_G0022421) #28	Atp5a1 (MGP_CAROLIEiJ_G0022422) #29	Pstpip2 (MGP_CAROLIEiJ_G0022423) #30	MGP_CAROLIEiJ_G0022424 #31	Siglec15 (MGP_CAROLIEiJ_G0022425) #32	Slc14a1 (MGP_CAROLIEiJ_G0022426) #33	Slc14a2 (MGP_CAROLIEiJ_G0022427) #34	MGP_CAROLIEiJ_G0022428 ##35	Setbp1 (MGP_CAROLIEiJ_G0022429) #36	Pard6g (MGP_CAROLIEiJ_G0022430) #37
Mus_B	ANCESTRAL SPECIES	19	ENSGT01100000263809	ENSGT00940000155402.a.b #8	ENSGT01030000234626.D #9	ENSGT00940000159394 #10	ENSGT00950000183010.a.b.a.b.b.b #11	ENSGT00390000018741 #12	ENSGT00390000008772 #13	ENSGT00940000159872 #14	ENSGT00940000153432.A.b #15	ENSGT00940000159814 #16	ENSGT00940000153499.a #17	ENSGT00940000160474 #18	ENSGT00510000047648.c #19	ENSGT00940000155805 #20	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #24	ENSGT00390000018830 #25	ENSGT00940000156997 #26	ENSGT00390000016167 #27	ENSGT00390000006029 #28	ENSGT00550000074846 #29	ENSGT00940000158788 #30	ENSGT00390000007354 #31	ENSGT01080000257333.E.o.a #32	ENSGT00390000018729.a.a #33	ENSGT00390000018729.a.b #34	ENSGT00950000183010.a.b.a.a.a.a.a.b.l.d ##35	ENSGT00940000158784 #36	ENSGT00950000183211.a.b #37	ENSGT01100000265037
Mouse	MODERN SPECIES	9	Cfap53 (ENSMUSG00000035394) #7	Myo5b (ENSMUSG00000025885) #8	Acaa2 (ENSMUSG00000036880) #9	Lipg (ENSMUSG00000053846) #10	Rpl17 (ENSMUSG00000062328) #11	BC031181 (ENSMUSG00000036299) #12	Dym (ENSMUSG00000035765) #13	Smad7 (ENSMUSG00000025880) #14	Ctif (ENSMUSG00000052928) #15	Zbtb7c (ENSMUSG00000044646) #16	Smad2 (ENSMUSG00000024563) #17	Skor2 (ENSMUSG00000091519) #18	Ier3ip1 (ENSMUSG00000090000)	Hdhd2 (ENSMUSG00000025421) #20	Katnal2 (ENSMUSG00000025420) #21	Pias2 (ENSMUSG00000025423) #22	St8sia5 (ENSMUSG00000025425) #24	Loxhd1 (ENSMUSG00000032818) #25	Rnf165 (ENSMUSG00000025427) #26	8030462N17Rik (ENSMUSG00000047466) #27	Haus1 (ENSMUSG00000041840) #28	Atp5a1 (ENSMUSG00000025428) #29	Pstpip2 (ENSMUSG00000025429) #30	Epg5 (ENSMUSG00000039840) #31	Siglec15 (ENSMUSG00000091055) #32	Slc14a1 (ENSMUSG00000059336) #33	Slc14a2 (ENSMUSG00000024552) #34	Gm6133 (ENSMUSG00000090451) ##35	Setbp1 (ENSMUSG00000024548) #36	Pard6g (ENSMUSG00000056214) #37	Adnp2 (ENSMUSG00000053950)
Mus_C	ANCESTRAL SPECIES	16	ENSGT01100000263809	ENSGT00940000155402.a.b #8	ENSGT01030000234626.D #9	ENSGT00940000159394 #10	ENSGT00950000183010.a.b.a.b.b.b #11	ENSGT00390000018741 #12	ENSGT00390000008772 #13	ENSGT00940000159872 #14	ENSGT00940000153432.A.b #15	ENSGT00940000159814 #16	ENSGT00940000153499.a #17	ENSGT00940000160474 #18	ENSGT00510000047648.c #19	ENSGT00940000155805 #20	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #24	ENSGT00390000018830 #25	ENSGT00940000156997 #26	ENSGT00390000016167 #27	ENSGT00390000006029 #28	ENSGT00550000074846 #29	ENSGT00940000158788 #30	ENSGT00390000007354 #31	ENSGT01080000257333.E.o.a #32	ENSGT00390000018729.a.a #33	ENSGT00390000018729.a.b #34	ENSGT00950000183010.a.b.a.a.a.a.a.b.l.d ##35	ENSGT00940000158784 #36	ENSGT00950000183211.a.b #37	ENSGT01100000265037
spretus	MODERN SPECIES	9	Cfap53 (MGP_SPRETEiJ_G0023313) #7	Myo5b (MGP_SPRETEiJ_G0023314) #8	Acaa2 (MGP_SPRETEiJ_G0023315) #9	Lipg (MGP_SPRETEiJ_G0023316) #10	MGP_SPRETEiJ_G0023317 ##35	BC031181 (MGP_SPRETEiJ_G0023318) #12	Dym (MGP_SPRETEiJ_G0023319) #13	Smad7 (MGP_SPRETEiJ_G0023320) #14	Ctif (MGP_SPRETEiJ_G0023321) #15	Zbtb7c (MGP_SPRETEiJ_G0023322) #16	Smad2 (MGP_SPRETEiJ_G0023323) #17	Skor2 (MGP_SPRETEiJ_G0023324) #18	MGP_SPRETEiJ_G0023325 #19	Hdhd2 (MGP_SPRETEiJ_G0023326) #20	Katnal2 (MGP_SPRETEiJ_G0023327) #21	Pias2 (MGP_SPRETEiJ_G0023328) #22	MGP_SPRETEiJ_G0023329	St8sia5 (MGP_SPRETEiJ_G0023330) #24	Loxhd1 (MGP_SPRETEiJ_G0023331) #25	8030462N17Rik (MGP_SPRETEiJ_G0023333) #27	Haus1 (MGP_SPRETEiJ_G0023334) #28	Atp5a1 (MGP_SPRETEiJ_G0023335) #29	Pstpip2 (MGP_SPRETEiJ_G0023336) #30	Epg5 (MGP_SPRETEiJ_G0023337) #31	Siglec15 (MGP_SPRETEiJ_G0023338) #32	Slc14a1 (MGP_SPRETEiJ_G0023339) #33	Slc14a2 (MGP_SPRETEiJ_G0023340) #34	MGP_SPRETEiJ_G0023341 ##35	Setbp1 (MGP_SPRETEiJ_G0023342) #36	Eola1 (MGP_SPRETEiJ_G0023343)	MGP_SPRETEiJ_G0023344
Steppe mouse	DUPLICATION
Steppe mouse	MODERN SPECIES	2730																ENSMSIG00000031992 #22	St8sia5 (ENSMSIG00000031990) #24	Loxhd1 (ENSMSIG00000031989) #25	Rnf165 (ENSMSIG00000031988) #26	8030462N17Rik (ENSMSIG00000031987) #27	Haus1 (ENSMSIG00000031985) #28	Atp5a1 (ENSMSIG00000031984) #29	Pstpip2 (ENSMSIG00000031982) #30
Steppe mouse	MODERN SPECIES	3130	Lipg (ENSMSIG00000019321) #10	Rpl17 (ENSMSIG00000019275) #11	BC031181 (ENSMSIG00000019259) #12	ENSMSIG00000019247	Dym (ENSMSIG00000019180) #13	Smad7 (ENSMSIG00000019123) #14	ENSMSIG00000019110	Ctif (ENSMSIG00000019005) #15	Zbtb7c (ENSMSIG00000018967) #16	ENSMSIG00000018946	Smad2 (ENSMSIG00000018887) #17	Skor2 (ENSMSIG00000018834) #18	ENSMSIG00000018819 #19	Hdhd2 (ENSMSIG00000018790) #20	Katnal2 (ENSMSIG00000018633) #21	ENSMSIG00000018626 #22
Rat	MODERN SPECIES	9	Mbd1 (ENSRNOG00000024104)	Myo5b (ENSRNOG00000014104) #8	Acaa2 (ENSRNOG00000013766) #9	Lipg (ENSRNOG00000018694) #10	Slc25a6 (ENSRNOG00000042387)	Rpl17 (ENSRNOG00000018680) ##35	Dym (ENSRNOG00000018425) #13	Smad7 (ENSRNOG00000018359) #14	Ctif (ENSRNOG00000018342) #15	ENSRNOG00000067472	Zbtb7c (ENSRNOG00000047924) #16	Smad2 (ENSRNOG00000018140) #17	Skor2 (ENSRNOG00000018006) #18	Ier3ip1 (ENSRNOG00000043171) #20	Katnal2 (ENSRNOG00000017788) #21	Pias2 (ENSRNOG00000017493) #22	St8sia5 (ENSRNOG00000022691) #24	Loxhd1 (ENSRNOG00000017410) #25	Rnf165 (ENSRNOG00000048824) #26	RGD1308601 (ENSRNOG00000017215) #27	ENSRNOG00000063575	Haus1 (ENSRNOG00000017067) #28	Atp5f1a (ENSRNOG00000017032) #29	Pstpip2 (ENSRNOG00000016987) #30	Epg5 (ENSRNOG00000052894) #31	Siglec15 (ENSRNOG00000033588) #32	Slc14a1 (ENSRNOG00000016753) #33	Slc14a2 (ENSRNOG00000061714) #34	Setbp1 (ENSRNOG00000016208) #36	ENSRNOG00000065450	Pard6g (ENSRNOG00000055157) #37