Glires ANCESTRAL SPECIES 23 ENSGT00940000155402.a.b #9 ENSGT01030000234626.D #10 ENSGT00940000159394 #11 ENSGT00950000183010.a.b.a.b.b.b #12 ENSGT00390000018741 #13 ENSGT00390000008772 #14 ENSGT00940000159872 #15 ENSGT00940000153432.A.b #16 ENSGT00940000159814 #17 ENSGT00940000153499.a #18 ENSGT00940000160474 ENSGT00510000047648 ENSGT00940000155805 #20 ENSGT00940000157302 #21 ENSGT00390000002428.a.g.b ENSGT01030000234539.a.a.b.b #22 ENSGT01030000234535.C #23 ENSGT00390000018830 #24 ENSGT00940000156997 #25 ENSGT00390000016167 #26 ENSGT00390000006029 #27 ENSGT00550000074846 #28 ENSGT00940000158788 #29 ENSGT00390000007354 #30 ENSGT01080000257333.E.o.a #31 ENSGT00390000018729.a.a #32 ENSGT00390000018729.a.b #33 ENSGT00940000158784 #34 ENSGT00940000159026 #35 ENSGT00940000161402 #36 ENSGT00940000156943 Rodentia ANCESTRAL SPECIES 23 ENSGT00940000155402.a.b #9 ENSGT01030000234626.D #10 ENSGT00940000159394 #11 ENSGT00950000183010.a.b.a.b.b.b #12 ENSGT00390000018741 #13 ENSGT00390000008772 #14 ENSGT00940000159872 #15 ENSGT00940000153432.A.b #16 ENSGT00940000159814 #17 ENSGT00940000153499.a #18 ENSGT00940000160474 ENSGT00510000047648 ENSGT00940000155805 #20 ENSGT00390000002428.a.g.b ENSGT00940000157302 #21 ENSGT01030000234539.a.a.b.b #22 ENSGT01030000234535.C #23 ENSGT00390000018830 #24 ENSGT00940000156997 #25 ENSGT00390000016167 #26 ENSGT00390000006029 #27 ENSGT00550000074846 #28 ENSGT00940000158788 #29 ENSGT00390000007354 #30 ENSGT01080000257333.E.o.a #31 ENSGT00390000018729.a.a #32 ENSGT00390000018729.a.b #33 ENSGT00940000158784 #34 ENSGT00940000159026 #35 ENSGT00940000161402 #36 ENSGT00940000156943 Rodentia_A ANCESTRAL SPECIES 23 ENSGT00940000155402.a.b #9 ENSGT01030000234626.D #10 ENSGT00940000159394 #11 ENSGT00950000183010.a.b.a.b.b.b #12 ENSGT00390000018741 #13 ENSGT00390000008772 #14 ENSGT00940000159872 #15 ENSGT00940000153432.A.b #16 ENSGT00940000159814 #17 ENSGT00940000153499.a #18 ENSGT00940000160474 ENSGT00510000047648 ENSGT00940000155805 #20 ENSGT00390000002428.a.g.b ENSGT00940000157302 #21 ENSGT01030000234539.a.a.b.b #22 ENSGT01030000234535.C #23 ENSGT00390000018830 #24 ENSGT00940000156997 #25 ENSGT00390000016167 #26 ENSGT00390000006029 #27 ENSGT00550000074846 #28 ENSGT00940000158788 #29 ENSGT00390000007354 #30 ENSGT01080000257333.E.o.a #31 ENSGT00390000018729.a.a #32 ENSGT00390000018729.a.b #33 ENSGT00940000158784 #34 ENSGT00940000159026 #35 ENSGT00940000161402 #36 ENSGT00940000156943 Sciuridae ANCESTRAL SPECIES 31 ENSGT00940000155402.a.b #9 ENSGT01030000234626.D #10 ENSGT00940000159394 #11 ENSGT00950000183010.a.b.a.b.b.b #12 ENSGT00390000018741 #13 ENSGT00390000008772 #14 ENSGT00940000159872 #15 ENSGT00940000153432.A.b #16 ENSGT00940000159814 #17 ENSGT00940000153499.a #18 ENSGT00940000160474 ENSGT00510000047648 ENSGT00940000155805 #20 ENSGT00390000002428.a.g.b ENSGT00940000157302 #21 ENSGT01030000234539.a.a.b.b #22 ENSGT01030000234535.C #23 ENSGT00390000018830 #24 ENSGT00940000156997 #25 ENSGT00390000016167 #26 ENSGT00390000006029 #27 ENSGT00550000074846.z #28 ENSGT00940000158788 #29 ENSGT00390000007354 #30 ENSGT01080000257333.E.o.a #31 ENSGT00390000018729.a.a #32 ENSGT00390000018729.a.b #33 ENSGT00940000158784 #34 ENSGT00940000159026 #35 ENSGT00940000161402 #36 ENSGT00940000156943 Marmotini ANCESTRAL SPECIES 31 ENSGT00940000155402.a.b #9 ENSGT01030000234626.D #10 ENSGT00940000159394 #11 ENSGT00950000183010.a.b.a.b.b.b #12 ENSGT00390000018741 #13 ENSGT00390000008772 #14 ENSGT00940000159872 #15 ENSGT00940000153432.A.b #16 ENSGT00940000159814 #17 ENSGT00940000153499.a #18 ENSGT01030000236530 #19 ENSGT00940000160474 ENSGT00510000047648 ENSGT00940000155805 #20 ENSGT00940000157302 #21 ENSGT01030000234539.a.a.b.b #22 ENSGT01030000234535.C #23 ENSGT00390000018830 #24 ENSGT00940000156997 #25 ENSGT00390000016167 #26 ENSGT00390000006029 #27 ENSGT00550000074846.z #28 ENSGT00940000158788 #29 ENSGT00390000007354 #30 ENSGT01080000257333.E.o.a #31 ENSGT00390000018729.a.a #32 ENSGT00390000018729.a.b #33 ENSGT00940000158784 #34 ENSGT00940000159026 #35 ENSGT00940000161402 #36 ENSGT00940000156943 Alpin marmot MODERN SPECIES 10 MBD1 (ENSMMMG00000005802) #7 CFAP53 (ENSMMMG00000005890) #8 MYO5B (ENSMMMG00000005915) #9 ACAA2 (ENSMMMG00000006091) #10 LIPG (ENSMMMG00000006111) #11 ENSMMMG00000006135 #12 C18orf32 (ENSMMMG00000006157) #13 DYM (ENSMMMG00000006170) #14 SMAD7 (ENSMMMG00000006202) #15 CTIF (ENSMMMG00000006232) #16 ZBTB7C (ENSMMMG00000006278) #17 SMAD2 (ENSMMMG00000006290) #18 ENSMMMG00000006338 #19 HDHD2 (ENSMMMG00000006342) #20 KATNAL2 (ENSMMMG00000006351) #21 PIAS2 (ENSMMMG00000006515) #22 ST8SIA5 (ENSMMMG00000006633) #23 LOXHD1 (ENSMMMG00000006669) #24 RNF165 (ENSMMMG00000006757) #25 C18orf25 (ENSMMMG00000006777) #26 HAUS1 (ENSMMMG00000006810) #27 ATP5F1A (ENSMMMG00000006823) #28 PSTPIP2 (ENSMMMG00000006839) #29 EPG5 (ENSMMMG00000006854) #30 SIGLEC15 (ENSMMMG00000006905) #31 SLC14A1 (ENSMMMG00000006914) #32 SLC14A2 (ENSMMMG00000006939) #33 SETBP1 (ENSMMMG00000006996) #34 SYT4 (ENSMMMG00000007022) #35 RIT2 (ENSMMMG00000007046) #36 ENSMMMG00000007059 #37 Marmotini_b ANCESTRAL SPECIES 137 ENSGT01030000234539.a.a.b.b #22 ENSGT01030000234535.C #23 ENSGT00390000018830 #24 ENSGT00940000156997 #25 ENSGT00390000016167 #26 ENSGT00390000006029 #27 ENSGT00550000074846.z #28 ENSGT00940000158788 #29 ENSGT00390000007354 #30 ENSGT01080000257333.E.o.a #31 ENSGT00390000018729.a.a #32 ENSGT00390000018729.a.b #33 ENSGT00940000158784 #34 ENSGT00940000159026 #35 ENSGT00940000161402 #36 ENSGT00940000156943 Arctic ground squirrel MODERN SPECIES 622 PIAS2 (ENSUPAG00010010887) #22 ST8SIA5 (ENSUPAG00010010865) #23 LOXHD1 (ENSUPAG00010010785) #24 ENSUPAG00010010781 #25 ENSUPAG00010010778 C18orf25 (ENSUPAG00010010766) #26 ENSUPAG00010010762 ENSUPAG00010010754 #27 ATP5F1A (ENSUPAG00010010740) #28 Squirrel MODERN SPECIES 117 PIAS2 (ENSSTOG00000014612) #22 ST8SIA5 (ENSSTOG00000027926) #23 LOXHD1 (ENSSTOG00000023476) #24 RNF165 (ENSSTOG00000023324) #25 C18orf25 (ENSSTOG00000006376) #26 HAUS1 (ENSSTOG00000003708) #27 ATP5F1A (ENSSTOG00000003680) #28 PSTPIP2 (ENSSTOG00000003652) #29 EPG5 (ENSSTOG00000021864) #30 SIGLEC15 (ENSSTOG00000002555) #31 SLC14A1 (ENSSTOG00000002535) #32 SLC14A2 (ENSSTOG00000002511) #33 SETBP1 (ENSSTOG00000002563) #34 SYT4 (ENSSTOG00000009215) #35 RIT2 (ENSSTOG00000027357) #36 PIK3C3 (ENSSTOG00000013565) Eurasian red squirrel DUPLICATION Eurasian red squirrel MODERN SPECIES 4 MYO5B (ENSSVLG00005020740) #9 ACAA2 (ENSSVLG00005020577) #10 LIPG (ENSSVLG00005020493) #11 ENSSVLG00005020364 #12 ENSSVLG00005020326 #13 DYM (ENSSVLG00005019977) #14 SMAD7 (ENSSVLG00005019787) #15 CTIF (ENSSVLG00005019619) #16 ZBTB7C (ENSSVLG00005019433) #17 ENSSVLG00005019379 #18 SKOR2 (ENSSVLG00005019180) ENSSVLG00005019150 HDHD2 (ENSSVLG00005019073) #20 ENSSVLG00005019019 KATNAL2 (ENSSVLG00005018737) #21 ENSSVLG00005018588 #22 ST8SIA5 (ENSSVLG00005018346) #23 LOXHD1 (ENSSVLG00005016724) #24 RNF165 (ENSSVLG00005016476) #25 C18orf25 (ENSSVLG00005016394) #26 HAUS1 (ENSSVLG00005016339) #27 ATP5F1A (ENSSVLG00005016277) #28 ENSSVLG00005016239 PSTPIP2 (ENSSVLG00005016011) #29 EPG5 (ENSSVLG00005015968) #30 SIGLEC15 (ENSSVLG00005015863) #31 SLC14A1 (ENSSVLG00005015590) #32 ENSSVLG00005015418 #33 SETBP1 (ENSSVLG00005015356) #34 ENSSVLG00005015263 SYT4 (ENSSVLG00005021147) #35 Eurasian red squirrel MODERN SPECIES 5 ENSSVLG00005021117 ENSSVLG00005021181 ENSSVLG00005021214 ENSSVLG00005021258 ENSSVLG00005021298 ENSSVLG00005021318 ENSSVLG00005021345 ENSSVLG00005021372 ENSSVLG00005021434 ENSSVLG00005021520 ENSSVLG00005021533 ENSSVLG00005021576 ENSSVLG00005021600 ENSSVLG00005021630 ENSSVLG00005021725 ENSSVLG00005021847 #22 ENSSVLG00005021855 ENSSVLG00005021866 ENSSVLG00005021916 ENSSVLG00005021930 ENSSVLG00005021944 ENSSVLG00005021980 ENSSVLG00005022012 ENSSVLG00005022087 ENSSVLG00005022131 ENSSVLG00005022162 ENSSVLG00005022225 ENSSVLG00005022258 ENSSVLG00005022282 ENSSVLG00005022318 ENSSVLG00005022349 Hystricomorpha ANCESTRAL SPECIES 32 ENSGT01050000244995 #8 ENSGT00940000155402.a.b #9 ENSGT01030000234626.D #10 ENSGT00940000159394 #11 ENSGT00950000183010.a.b.a.b.b.b #12 ENSGT00390000018741 #13 ENSGT00390000008772 #14 ENSGT00940000159872 #15 ENSGT00940000153432.A.b #16 ENSGT00940000159814 #17 ENSGT00940000153499.a #18 ENSGT00940000160474 ENSGT00510000047648 ENSGT00940000155805 #20 ENSGT00940000157302 #21 ENSGT01030000234539.a.a.b.b #22 ENSGT01030000234535.C #23 ENSGT00390000018830 #24 ENSGT00940000156997 #25 ENSGT00390000016167 #26 ENSGT00390000006029.q #27 ENSGT00550000074846 #28 ENSGT00940000158788 #29 ENSGT00390000007354 #30 ENSGT01080000257333.E.o.a #31 ENSGT00390000018729.a.a #32 ENSGT00390000018729.a.b #33 ENSGT00940000158784 #34 ENSGT00940000159026 #35 ENSGT00940000161402 #36 ENSGT00940000156943 Hystricomorpha_a ANCESTRAL SPECIES 26 ENSGT01050000244995 #8 ENSGT00940000155402.a.b #9 ENSGT01030000234626.D #10 ENSGT00940000159394 #11 ENSGT00950000183010.a.b.a.b.b.b #12 ENSGT00390000018741 #13 ENSGT00390000008772 #14 ENSGT00940000159872 #15 ENSGT00940000153432.A.b #16 ENSGT00940000159814 #17 ENSGT00940000153499.a #18 ENSGT00940000160474 ENSGT00510000047648 ENSGT00940000155805 #20 ENSGT00940000157302 #21 ENSGT01030000234539.a.a.b.b #22 ENSGT01030000234535.C #23 ENSGT00390000018830 #24 ENSGT00940000156997 #25 ENSGT00390000016167 #26 ENSGT00390000006029.q #27 ENSGT00390000006029.p #27 ENSGT00550000074846 #28 ENSGT00940000158788 #29 ENSGT00390000007354 #30 ENSGT01080000257333.E.o.a #31 ENSGT00390000018729.a.a #32 ENSGT00390000018729.a.b #33 ENSGT00940000158784 #34 ENSGT00940000159026 #35 ENSGT00940000161402 #36 Guinea pig DUPLICATION Guinea pig MODERN SPECIES 14 CFAP53 (ENSCPOG00000001668) #8 MYO5B (ENSCPOG00000014213) #9 ACAA2 (ENSCPOG00000004734) #10 LIPG (ENSCPOG00000008890) #11 ENSCPOG00000019337 #12 C18orf32 (ENSCPOG00000034745) #13 DYM (ENSCPOG00000013484) #14 SMAD7 (ENSCPOG00000030295) #15 CTIF (ENSCPOG00000001049) #16 ZBTB7C (ENSCPOG00000040464) #17 SMAD2 (ENSCPOG00000013398) #18 SKOR2 (ENSCPOG00000021920) IER3IP1 (ENSCPOG00000040200) HDHD2 (ENSCPOG00000030325) #20 KATNAL2 (ENSCPOG00000008150) #21 ENSCPOG00000003067 #22 ST8SIA5 (ENSCPOG00000030161) #23 LOXHD1 (ENSCPOG00000009824) #24 RNF165 (ENSCPOG00000009298) #25 HAUS1 (ENSCPOG00000012723) #27 ATP5F1A (ENSCPOG00000012719) #28 PSTPIP2 (ENSCPOG00000004876) #29 EPG5 (ENSCPOG00000012114) #30 SLC14A1 (ENSCPOG00000007979) #32 ENSCPOG00000007976 #33 SETBP1 (ENSCPOG00000011164) #34 SYT4 (ENSCPOG00000009941) #35 RIT2 (ENSCPOG00000009357) #36 PIK3C3 (ENSCPOG00000004375) ENSCPOG00000040621 CELF4 (ENSCPOG00000035956) Guinea pig MODERN SPECIES HACL1 (ENSCPOG00000024203) COLQ (ENSCPOG00000002476) EAF1 (ENSCPOG00000031143) METTL6 (ENSCPOG00000037082) ABHD6 (ENSCPOG00000037337) RPP14 (ENSCPOG00000004281) HTD2 (ENSCPOG00000036094) PXK (ENSCPOG00000006707) PDHB (ENSCPOG00000006713) KCTD6 (ENSCPOG00000006719) ACOX2 (ENSCPOG00000006721) FAM107A (ENSCPOG00000014689) FAM3D (ENSCPOG00000014686) CFAP20DC (ENSCPOG00000010572) FHIT (ENSCPOG00000014924) ENSCPOG00000032909 #22 PTPRG (ENSCPOG00000003197) C3orf14 (ENSCPOG00000006026) FEZF2 (ENSCPOG00000001697) ENSCPOG00000001699 SYNPR (ENSCPOG00000012817) SNTN (ENSCPOG00000012821) ENSCPOG00000021409 THOC7 (ENSCPOG00000007930) ATXN7 (ENSCPOG00000002924) PSMD6 (ENSCPOG00000006160) PRICKLE2 (ENSCPOG00000031153) ADAMTS9 (ENSCPOG00000004877) MAGI1 (ENSCPOG00000002169) ENSCPOG00000013562 DYNC1LI1 (ENSCPOG00000011613) Hystricomorpha_b ANCESTRAL SPECIES 21 ENSGT01100000263809 ENSGT00940000155402.a.b #9 ENSGT01030000234626.D #10 ENSGT00940000159394 #11 ENSGT00950000183010.a.b.a.b.b.b #12 ENSGT00390000018741 #13 ENSGT00390000008772 #14 ENSGT00940000159872 #15 ENSGT00940000153432.A.b #16 ENSGT00940000159814 #17 ENSGT00940000153499.a #18 ENSGT00940000160474 ENSGT00510000047648 ENSGT00940000155805 #20 ENSGT00940000157302 #21 ENSGT01030000234539.a.a.b.b #22 ENSGT01030000234535.C #23 ENSGT00390000018830 #24 ENSGT00940000156997 #25 ENSGT00390000016167 #26 ENSGT00390000006029.q #27 ENSGT00550000074846 #28 ENSGT00940000158788 #29 ENSGT00390000007354 #30 ENSGT01080000257333.E.o.a #31 ENSGT00390000018729.a.a #32 ENSGT00390000018729.a.b #33 ENSGT00940000158784 #34 ENSGT00940000159026 #35 ENSGT00940000161402 #36 ENSGT00940000156943 Long-tailed chinchilla DUPLICATION Long-tailed chinchilla MODERN SPECIES 109 ENSCLAG00000008597 ENSCLAG00000007196 LIPG (ENSCLAG00000011863) #11 ENSCLAG00000010369 ENSCLAG00000008914 #12 C18orf32 (ENSCLAG00000008711) #13 DYM (ENSCLAG00000008080) #14 SMAD7 (ENSCLAG00000007063) #15 CTIF (ENSCLAG00000008174) #16 ZBTB7C (ENSCLAG00000012082) #17 SMAD2 (ENSCLAG00000011258) #18 SKOR2 (ENSCLAG00000012544) IER3IP1 (ENSCLAG00000007652) HDHD2 (ENSCLAG00000006391) #20 KATNAL2 (ENSCLAG00000013657) #21 ENSCLAG00000011621 #22 ST8SIA5 (ENSCLAG00000012639) #23 LOXHD1 (ENSCLAG00000011718) #24 RNF165 (ENSCLAG00000009534) #25 C18orf25 (ENSCLAG00000008611) #26 HAUS1 (ENSCLAG00000012155) #27 ATP5F1A (ENSCLAG00000014431) #28 ENSCLAG00000015055 PSTPIP2 (ENSCLAG00000011006) #29 EPG5 (ENSCLAG00000009230) #30 SIGLEC15 (ENSCLAG00000007394) #31 SLC14A1 (ENSCLAG00000007299) #32 SLC14A2 (ENSCLAG00000012015) #33 SETBP1 (ENSCLAG00000010509) #34 ENSCLAG00000008619 SYT4 (ENSCLAG00000008440) #35 Long-tailed chinchilla MODERN SPECIES 127 SEC22C (ENSCLAG00000016050) VIPR1 (ENSCLAG00000016513) LYZL4 (ENSCLAG00000016944) CCK (ENSCLAG00000017113) TRAK1 (ENSCLAG00000014205) ULK4 (ENSCLAG00000015979) CTNNB1 (ENSCLAG00000016464) ZNF621 (ENSCLAG00000016834) RPL14 (ENSCLAG00000016120) ENTPD3 (ENSCLAG00000016343) EIF1B (ENSCLAG00000016040) MYRIP (ENSCLAG00000016112) ENSCLAG00000014655 ENSCLAG00000015318 SLC25A38 (ENSCLAG00000015393) ENSCLAG00000016657 #22 Degu DUPLICATION Degu DUPLICATION Degu MODERN SPECIES 44 ENSODEG00000018393 DYM (ENSODEG00000018486) #14 SMAD7 (ENSODEG00000018424) #15 CTIF (ENSODEG00000018390) #16 ZBTB7C (ENSODEG00000018417) #17 SMAD2 (ENSODEG00000018373) #18 ENSODEG00000018377 ENSODEG00000018340 ENSODEG00000018367 SKOR2 (ENSODEG00000018363) IER3IP1 (ENSODEG00000018375) HDHD2 (ENSODEG00000018388) #20 KATNAL2 (ENSODEG00000018481) #21 ENSODEG00000018457 ENSODEG00000020536 ENSODEG00000018432 #22 ST8SIA5 (ENSODEG00000018352) #23 ENSODEG00000020498 LOXHD1 (ENSODEG00000018482) #24 RNF165 (ENSODEG00000018412) #25 C18orf25 (ENSODEG00000018458) #26 ENSODEG00000018366 #27 ATP5F1A (ENSODEG00000018359) #28 ENSODEG00000020534 ENSODEG00000018334 PSTPIP2 (ENSODEG00000018461) #29 EPG5 (ENSODEG00000018404) #30 SIGLEC15 (ENSODEG00000018459) #31 SLC14A1 (ENSODEG00000018379) #32 SLC14A2 (ENSODEG00000018353) #33 SETBP1 (ENSODEG00000018419) #34 Degu MODERN SPECIES 65 ENSODEG00000006806 MTFR2 (ENSODEG00000006976) PDE7B (ENSODEG00000007023) ENSODEG00000007137 ENSODEG00000006953 ENSODEG00000019597 ENSODEG00000008684 HBS1L (ENSODEG00000008959) ALDH8A1 (ENSODEG00000007514) ENSODEG00000006585 SLC2A12 (ENSODEG00000007816) ENSODEG00000006582 TCF21 (ENSODEG00000007820) ENSODEG00000019436 FNDC1 (ENSODEG00000007591) ENSODEG00000009689 #22 TAGAP (ENSODEG00000007094) RSPH3 (ENSODEG00000006702) ENSODEG00000007168 ENSODEG00000006754 ENSODEG00000009659 SYTL3 (ENSODEG00000007102) ENSODEG00000007702 ENSODEG00000007461 TULP4 (ENSODEG00000007452) ENSODEG00000019398 ENSODEG00000008981 SERAC1 (ENSODEG00000008208) SYNJ2 (ENSODEG00000007709) SNX9 (ENSODEG00000005916) ENSODEG00000019604 Degu MODERN SPECIES 185 ENSODEG00000004409 ENSODEG00000004390 ENSODEG00000004382 ENSODEG00000004245 NRP1 (ENSODEG00000004113) PARD3 (ENSODEG00000004622) ENSODEG00000004486 ENSODEG00000004461 ENSODEG00000004444 ENSODEG00000004428 ENSODEG00000004400 MPP7 (ENSODEG00000004278) ODAD2 (ENSODEG00000004199) MKX (ENSODEG00000004159) ENSODEG00000004150 ENSODEG00000004139 #22 Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 31 ENSHGLG00000002579 ENSHGLG00000002181 ENSHGLG00000002863 ENSHGLG00000035843 ENSHGLG00000046679 ENSHGLG00000001046 ENSHGLG00000000969 UXT (ENSHGLG00000000945) ELK1 (ENSHGLG00000000926) CFP (ENSHGLG00000000905) TIMP1 (ENSHGLG00000000794) SYN1 (ENSHGLG00000000779) ENSHGLG00000000754 ENSHGLG00000043935 ZNF41 (ENSHGLG00000049389) ENSHGLG00000046479 #22 ENSHGLG00000001450 ENSHGLG00000045718 ENSHGLG00000044888 USP11 (ENSHGLG00000001371) CDK16 (ENSHGLG00000001209) UBA1 (ENSHGLG00000000529) RBM10 (ENSHGLG00000000890) Ndufb11 (ENSHGLG00000045173) Rgn (ENSHGLG00000000674) ENSHGLG00000000616 RP2 (ENSHGLG00000047413) ENSHGLG00000020120 SLC9A7 (ENSHGLG00000007119) CHST7 (ENSHGLG00000006779) ENSHGLG00000045686 Naked mole-rat female MODERN SPECIES 9 LIPG (ENSHGLG00000010224) #11 ENSHGLG00000047452 ##12 ENSHGLG00000036153 ##12 ENSHGLG00000009081 #13 ENSHGLG00000015030 #14 ENSHGLG00000040505 ENSHGLG00000048272 #37 ENSHGLG00000042101 #15 ENSHGLG00000031912 SMAD2 (ENSHGLG00000008711) #18 SKOR2 (ENSHGLG00000035792) ENSHGLG00000048898 HDHD2 (ENSHGLG00000010130) #20 ENSHGLG00000034217 #21 ENSHGLG00000040167 PIAS2 (ENSHGLG00000015588) #22 ST8SIA5 (ENSHGLG00000040367) #23 ENSHGLG00000006211 #24 RNF165 (ENSHGLG00000035767) #25 C18orf25 (ENSHGLG00000041108) #26 ENSHGLG00000036445 #28 ENSHGLG00000036850 #27 ENSHGLG00000009522 #28 PSTPIP2 (ENSHGLG00000005740) #29 SLC14A1 (ENSHGLG00000007316) #32 ENSHGLG00000005880 #33 ENSHGLG00000046959 #33 ENSHGLG00000033588 ENSHGLG00000040364 #34 ENSHGLG00000001864 ENSHGLG00000041163 Rodentia_B ANCESTRAL SPECIES 27 ENSGT01050000244995 #8 ENSGT00940000155402.a.b #9 ENSGT01030000234626.D #10 ENSGT00940000159394 #11 ENSGT00950000183010.a.b.a.b.b.b #12 ENSGT00390000018741 #13 ENSGT00390000008772 #14 ENSGT00940000159872 #15 ENSGT00940000153432.A.b #16 ENSGT00940000159814 #17 ENSGT00940000153499.a #18 ENSGT00940000160474 ENSGT00510000047648 ENSGT00940000155805 #20 ENSGT00940000157302 #21 ENSGT01030000234539.a.a.b.b #22 ENSGT01030000234535.C #23 ENSGT00390000018830 #24 ENSGT00940000156997 #25 ENSGT00390000016167 #26 ENSGT00390000006029 #27 ENSGT00550000074846 #28 ENSGT00940000158788 #29 ENSGT00390000007354 #30 ENSGT01080000257333.E.o.a #31 ENSGT00390000018729.a.a #32 ENSGT00390000018729.a.b #33 ENSGT00940000158784 #34 ENSGT00940000159026 #35 ENSGT00940000161402 #36 ENSGT00940000156943 Kangaroo rat MODERN SPECIES 344 Pias2 (ENSDORG00000013246) #22 St8sia5 (ENSDORG00000014254) #23 ENSDORG00000014253 #24 Rnf165 (ENSDORG00000008058) #25 8030462N17Rik (ENSDORG00000004172) #26 Haus1 (ENSDORG00000023830) #27 Atp5a1 (ENSDORG00000009630) #28 Pstpip2 (ENSDORG00000003911) #29 Epg5 (ENSDORG00000013620) #30 ENSDORG00000013618 Slc14a1 (ENSDORG00000014939) #32 ENSDORG00000014932 #33 Setbp1 (ENSDORG00000006424) #34 Syt4 (ENSDORG00000012271) #35 Rit2 (ENSDORG00000009400) #36 Pik3c3 (ENSDORG00000014804) Myomorpha ANCESTRAL SPECIES 35 ENSGT01100000263809 ENSGT00940000155402.a.b #9 ENSGT01030000234626.D #10 ENSGT00940000159394 #11 ENSGT00950000183010.a.b.a.b.b.b #12 ENSGT00390000018741 #13 ENSGT00390000008772 #14 ENSGT00940000159872 #15 ENSGT00940000153432.A.b #16 ENSGT00940000159814 #17 ENSGT00940000153499.a #18 ENSGT00940000160474 ENSGT00510000047648 ENSGT00940000155805 #20 ENSGT00940000157302 #21 ENSGT01030000234539.a.a.b.b #22 ENSGT01030000234535.C #23 ENSGT00390000018830 #24 ENSGT00940000156997 #25 ENSGT00390000016167 #26 ENSGT00390000006029 #27 ENSGT00550000074846 #28 ENSGT00940000158788 #29 ENSGT00390000007354 #30 ENSGT01080000257333.E.o.a #31 ENSGT00390000018729.a.a #32 ENSGT00390000018729.a.b #33 ENSGT00940000158784 #34 ENSGT01030000234510.a.a.b ENSGT01030000234510.a.a.a.a.a.a ENSGT00390000002368 Lesser Egyptian jerboa DUPLICATION Lesser Egyptian jerboa MODERN SPECIES 60 BC031181 (ENSJJAG00000013965) #13 Dym (ENSJJAG00000000543) #14 ENSJJAG00000011899 ENSJJAG00000014372 ENSJJAG00000011224 Smad7 (ENSJJAG00000017342) #15 Ctif (ENSJJAG00000013706) #16 ENSJJAG00000000639 Zbtb7c (ENSJJAG00000005484) #17 ENSJJAG00000000783 Smad2 (ENSJJAG00000021902) #18 Skor2 (ENSJJAG00000013235) ENSJJAG00000009768 Hdhd2 (ENSJJAG00000020515) #20 Katnal2 (ENSJJAG00000013360) #21 ENSJJAG00000021561 #22 St8sia5 (ENSJJAG00000023613) #23 Loxhd1 (ENSJJAG00000012049) #24 Rnf165 (ENSJJAG00000014596) #25 8030462N17Rik (ENSJJAG00000015948) #26 ENSJJAG00000014908 #27 ENSJJAG00000022136 #28 Pstpip2 (ENSJJAG00000011600) #29 Epg5 (ENSJJAG00000008036) #30 Siglec15 (ENSJJAG00000011775) #31 Slc14a1 (ENSJJAG00000009670) #32 ENSJJAG00000021572 #33 Setbp1 (ENSJJAG00000004320) #34 ENSJJAG00000000736 Mc2r (ENSJJAG00000000906) Mc5r (ENSJJAG00000012730) Lesser Egyptian jerboa MODERN SPECIES 66 ENSJJAG00000019056 Ccdc171 (ENSJJAG00000020916) ENSJJAG00000015360 Snapc3 (ENSJJAG00000018408) Ttc39b (ENSJJAG00000004238) ENSJJAG00000010564 ENSJJAG00000015519 Cer1 (ENSJJAG00000023511) Zdhhc21 (ENSJJAG00000002851) Nfib (ENSJJAG00000013052) ENSJJAG00000010432 Mpdz (ENSJJAG00000012097) Lurap1l (ENSJJAG00000014520) Tyrp1 (ENSJJAG00000015009) ENSJJAG00000010326 ENSJJAG00000023453 #22 Muroidea ANCESTRAL SPECIES 13 ENSGT01100000263809 ENSGT00940000155402.a.b #9 ENSGT01030000234626.D #10 ENSGT00940000159394 #11 ENSGT00950000183010.a.b.a.b.b.b #12 ENSGT00390000018741 #13 ENSGT00390000008772 #14 ENSGT00940000159872 #15 ENSGT00940000153432.A.b #16 ENSGT00940000159814 #17 ENSGT00940000153499.a #18 ENSGT00940000160474 ENSGT00510000047648 ENSGT00940000155805 #20 ENSGT00940000157302 #21 ENSGT01030000234539.a.a.b.b #22 ENSGT01030000234535.C #23 ENSGT00390000018830 #24 ENSGT00940000156997 #25 ENSGT00390000016167 #26 ENSGT00390000006029 #27 ENSGT00550000074846 #28 ENSGT00940000158788 #29 ENSGT00390000007354 #30 ENSGT01080000257333.E.o.a #31 ENSGT00390000018729.a.a #32 ENSGT00390000018729.a.b #33 ENSGT00940000158784 #34 ENSGT01030000234510.a.a.b ENSGT01030000234510.a.a.a.a.a.a ENSGT00390000002368 Upper Galilee mountains blind mole rat MODERN SPECIES 1888 Dym (ENSNGAG00000020852) #14 ENSNGAG00000001549 Smad7 (ENSNGAG00000004962) #15 Ctif (ENSNGAG00000011452) #16 Zbtb7c (ENSNGAG00000012022) #17 Smad2 (ENSNGAG00000013343) #18 Skor2 (ENSNGAG00000018430) ENSNGAG00000020722 Hdhd2 (ENSNGAG00000000250) #20 Katnal2 (ENSNGAG00000010954) #21 Pias2 (ENSNGAG00000010511) #22 St8sia5 (ENSNGAG00000017269) #23 Loxhd1 (ENSNGAG00000020158) #24 Rnf165 (ENSNGAG00000012965) #25 8030462N17Rik (ENSNGAG00000014428) #26 Haus1 (ENSNGAG00000001553) #27 Atp5a1 (ENSNGAG00000009807) #28 Pstpip2 (ENSNGAG00000018122) #29 Epg5 (ENSNGAG00000005612) #30 Siglec15 (ENSNGAG00000013867) #31 Slc14a1 (ENSNGAG00000014056) #32 ENSNGAG00000015050 #33 Setbp1 (ENSNGAG00000016368) #34 Mc2r (ENSNGAG00000014364) Mc5r (ENSNGAG00000008073) Rnmt (ENSNGAG00000014958) Muroidea_A ANCESTRAL SPECIES 18 ENSGT01100000263809 ENSGT00940000155402.a.b #9 ENSGT01030000234626.D #10 ENSGT00940000159394 #11 ENSGT00950000183010.a.b.a.b.b.b #12 ENSGT00390000018741 #13 ENSGT00390000008772 #14 ENSGT00940000159872 #15 ENSGT00940000153432.A.b #16 ENSGT00940000159814 #17 ENSGT00940000153499.a #18 ENSGT00940000160474 ENSGT00510000047648 ENSGT00940000155805 #20 ENSGT00940000157302 #21 ENSGT01030000234539.a.a.b.b #22 ENSGT01030000234535.C #23 ENSGT00390000018830 #24 ENSGT00940000156997 #25 ENSGT00390000016167 #26 ENSGT00390000006029 #27 ENSGT00550000074846 #28 ENSGT00940000158788 #29 ENSGT00390000007354 #30 ENSGT01080000257333.E.o.a #31 ENSGT00390000018729.a.a #32 ENSGT00390000018729.a.b #33 ENSGT00940000158784 #34 ENSGT00950000183211.a.b ENSGT00530000063631.a ENSGT00390000011362 Cricetidae ANCESTRAL SPECIES 18 ENSGT01100000263809 ENSGT00940000155402.a.b #9 ENSGT01030000234626.D #10 ENSGT00940000159394 #11 ENSGT00950000183010.a.b.a.b.b.b #12 ENSGT00390000018741 #13 ENSGT00390000008772 #14 ENSGT00940000159872 #15 ENSGT00940000153432.A.b #16 ENSGT00940000159814 #17 ENSGT00940000153499.a #18 ENSGT00940000160474 ENSGT00510000047648 ENSGT00940000155805 #20 ENSGT00940000157302 #21 ENSGT01030000234539.a.a.b.b #22 ENSGT01030000234535.C #23 ENSGT00390000018830 #24 ENSGT00940000156997 #25 ENSGT00390000016167 #26 ENSGT00390000006029 #27 ENSGT00550000074846.u #28 ENSGT00940000158788 #29 ENSGT00390000007354 #30 ENSGT01080000257333.E.o.a #31 ENSGT00390000018729.a.a.e #32 ENSGT00390000018729.a.b #33 ENSGT00940000158784 #34 ENSGT00950000183211.a.b ENSGT00530000063631.a ENSGT00390000011362 Cricetinae ANCESTRAL SPECIES 14 ENSGT01100000263809 ENSGT00940000155402.a.b #9 ENSGT01030000234626.D #10 ENSGT00940000159394 #11 ENSGT00950000183010.a.b.a.b.b.b #12 ENSGT00390000018741 #13 ENSGT00390000008772 #14 ENSGT00940000159872 #15 ENSGT00940000153432.A.b #16 ENSGT00940000159814 #17 ENSGT00940000153499.a #18 ENSGT00940000160474 ENSGT00510000047648 ENSGT00940000155805 #20 ENSGT00940000157302 #21 ENSGT01030000234539.a.a.b.b #22 ENSGT01030000234535.C #23 ENSGT00390000018830 #24 ENSGT00940000156997 #25 ENSGT00390000016167 #26 ENSGT00390000006029 #27 ENSGT00550000074846.u #28 ENSGT00940000158788 #29 ENSGT00390000007354 #30 ENSGT01080000257333.E.o.a #31 ENSGT00390000018729.a.a.e #32 ENSGT00390000018729.a.b #33 Chinese hamster chok1gshd MODERN SPECIES 314 Zbtb7c (ENSCGRG00001005320) #17 Smad2 (ENSCGRG00001006348) #18 Skor2 (ENSCGRG00001007925) Hdhd2 (ENSCGRG00001009445) #20 Katnal2 (ENSCGRG00001010923) #21 Pias2 (ENSCGRG00001023617) #22 St8sia5 (ENSCGRG00001004611) #23 Loxhd1 (ENSCGRG00001009440) #24 Rnf165 (ENSCGRG00001011050) #25 8030462N17Rik (ENSCGRG00001011465) #26 Haus1 (ENSCGRG00001012089) #27 Atp5a1 (ENSCGRG00001012335) #28 Pstpip2 (ENSCGRG00001012933) #29 Epg5 (ENSCGRG00001013764) #30 Siglec15 (ENSCGRG00001014278) #31 ENSCGRG00001014534 Slc14a1 (ENSCGRG00001014682) #32 Slc14a2 (ENSCGRG00001015350) #33 ENSCGRG00001002557 Setbp1 (ENSCGRG00001003049) #34 ENSCGRG00001005434 Golden Hamster MODERN SPECIES 680 Myo5b (ENSMAUG00000000930) #9 Acaa2 (ENSMAUG00000018671) #10 Lipg (ENSMAUG00000000351) #11 Rpl17 (ENSMAUG00000015927) #12 BC031181 (ENSMAUG00000019483) #13 Dym (ENSMAUG00000017721) #14 ENSMAUG00000020878 Smad7 (ENSMAUG00000020326) #15 Ctif (ENSMAUG00000000656) #16 Zbtb7c (ENSMAUG00000000374) #17 Smad2 (ENSMAUG00000006737) #18 Skor2 (ENSMAUG00000016006) ENSMAUG00000012040 Hdhd2 (ENSMAUG00000019526) #20 Katnal2 (ENSMAUG00000019836) #21 Pias2 (ENSMAUG00000014565) #22 St8sia5 (ENSMAUG00000011966) #23 Loxhd1 (ENSMAUG00000010353) #24 Rnf165 (ENSMAUG00000017550) #25 8030462N17Rik (ENSMAUG00000006561) #26 Haus1 (ENSMAUG00000009723) #27 Atp5f1a (ENSMAUG00000019838) #28 Pstpip2 (ENSMAUG00000014774) #29 Epg5 (ENSMAUG00000019707) #30 Siglec15 (ENSMAUG00000000352) #31 Slc14a1 (ENSMAUG00000014121) #32 ENSMAUG00000018876 #33 ENSMAUG00000006240 ENSMAUG00000014437 Toporsl (ENSMAUG00000021881) Or13c3 (ENSMAUG00000004828) Cricetidae_B ANCESTRAL SPECIES 15 ENSGT01100000263809 ENSGT00940000155402.a.b #9 ENSGT01030000234626.D #10 ENSGT00940000159394 #11 ENSGT00950000183010.a.b.a.b.b.b #12 ENSGT00390000018741 #13 ENSGT00390000008772 #14 ENSGT00940000159872 #15 ENSGT00940000153432.A.b #16 ENSGT00940000159814 #17 ENSGT00940000153499.a #18 ENSGT00940000160474 ENSGT00510000047648 ENSGT00940000155805 #20 ENSGT00940000157302 #21 ENSGT01030000234539.a.a.b.b #22 ENSGT01030000234535.C #23 ENSGT00390000018830 #24 ENSGT00940000156997 #25 ENSGT00390000016167 #26 ENSGT00390000006029 #27 ENSGT00550000074846.u #28 ENSGT00940000158788 #29 ENSGT00390000007354 #30 ENSGT01080000257333.E.o.a #31 ENSGT00390000018729.a.a.e #32 ENSGT00390000018729.a.b #33 ENSGT00940000158784 #34 ENSGT00950000183211.a.b ENSGT00530000063631.a ENSGT00390000011362 Northern American deer mouse MODERN SPECIES 10 Myo5b (ENSPEMG00000020539) #9 Acaa2 (ENSPEMG00000022034) #10 ENSPEMG00000025726 ENSPEMG00000028900 Lipg (ENSPEMG00000021868) #11 Rpl17 (ENSPEMG00000001520) #12 Dym (ENSPEMG00000020826) #14 Smad7 (ENSPEMG00000021331) #15 Ctif (ENSPEMG00000022746) #16 Zbtb7c (ENSPEMG00000020629) #17 Smad2 (ENSPEMG00000020383) #18 Skor2 (ENSPEMG00000022190) ENSPEMG00000026193 Hdhd2 (ENSPEMG00000020912) #20 Katnal2 (ENSPEMG00000021096) #21 Pias2 (ENSPEMG00000022220) #22 St8sia5 (ENSPEMG00000022119) #23 Loxhd1 (ENSPEMG00000022919) #24 ENSPEMG00000029031 #25 8030462N17Rik (ENSPEMG00000010341) #26 Haus1 (ENSPEMG00000021388) #27 Atp5a1 (ENSPEMG00000022004) #28 Pstpip2 (ENSPEMG00000022379) #29 Epg5 (ENSPEMG00000022153) #30 Siglec15 (ENSPEMG00000024146) #31 ENSPEMG00000028869 Slc14a1 (ENSPEMG00000008835) #32 ENSPEMG00000022112 #33 Setbp1 (ENSPEMG00000021869) #34 ENSPEMG00000006471 Pard6g (ENSPEMG00000025457) Prairie vole MODERN SPECIES 5 ENSMOCG00000008152 Myo5b (ENSMOCG00000022368) #9 Acaa2 (ENSMOCG00000004236) #10 Lipg (ENSMOCG00000020738) #11 Rpl17 (ENSMOCG00000012741) #12 BC031181 (ENSMOCG00000012446) #13 Dym (ENSMOCG00000022593) #14 Smad7 (ENSMOCG00000001269) #15 Ctif (ENSMOCG00000020507) #16 Zbtb7c (ENSMOCG00000017640) #17 Smad2 (ENSMOCG00000017648) #18 Skor2 (ENSMOCG00000018264) ENSMOCG00000009073 Hdhd2 (ENSMOCG00000008063) #20 Katnal2 (ENSMOCG00000011716) #21 Pias2 (ENSMOCG00000015605) #22 St8sia5 (ENSMOCG00000011361) #23 Loxhd1 (ENSMOCG00000016732) #24 ENSMOCG00000019837 #25 8030462N17Rik (ENSMOCG00000000844) #26 Haus1 (ENSMOCG00000011366) #27 Atp5a1 (ENSMOCG00000009175) #28 Pstpip2 (ENSMOCG00000006361) #29 Epg5 (ENSMOCG00000015567) #30 Siglec15 (ENSMOCG00000007709) #31 ENSMOCG00000002421 #32 Slc14a2 (ENSMOCG00000013965) #33 Setbp1 (ENSMOCG00000021557) #34 Pard6g (ENSMOCG00000019881) ENSMOCG00000019582 Rbfa (ENSMOCG00000018963) Murinae ANCESTRAL SPECIES 17 ENSGT01100000263809 ENSGT00940000155402.a.b #9 ENSGT01030000234626.D #10 ENSGT00940000159394 #11 ENSGT00950000183010.a.b.a.b.b.b #12 ENSGT00390000018741 #13 ENSGT00390000008772 #14 ENSGT00940000159872 #15 ENSGT00940000153432.A.b #16 ENSGT00940000159814 #17 ENSGT00940000153499.a #18 ENSGT00940000160474 ENSGT00510000047648 ENSGT00940000155805 #20 ENSGT00940000157302 #21 ENSGT01030000234539.a.a.b.b #22 ENSGT01030000234535.C #23 ENSGT00390000018830 #24 ENSGT00940000156997 #25 ENSGT00390000016167 #26 ENSGT00390000006029 #27 ENSGT00550000074846 #28 ENSGT00940000158788 #29 ENSGT00390000007354 #30 ENSGT01080000257333.E.o.a #31 ENSGT00390000018729.a.a #32 ENSGT00390000018729.a.b #33 ENSGT00940000158784 #34 ENSGT00950000183211.a.b ENSGT00530000063631.a ENSGT00390000011362 Rat MODERN SPECIES 9 Mbd1 (ENSRNOG00000024104) #7 Myo5b (ENSRNOG00000014104) #9 Acaa2 (ENSRNOG00000013766) #10 Lipg (ENSRNOG00000018694) #11 Slc25a6 (ENSRNOG00000042387) Rpl17 (ENSRNOG00000018680) ##12 Dym (ENSRNOG00000018425) #14 Smad7 (ENSRNOG00000018359) #15 Ctif (ENSRNOG00000018342) #16 ENSRNOG00000067472 Zbtb7c (ENSRNOG00000047924) #17 Smad2 (ENSRNOG00000018140) #18 Skor2 (ENSRNOG00000018006) Ier3ip1 (ENSRNOG00000043171) #20 Katnal2 (ENSRNOG00000017788) #21 Pias2 (ENSRNOG00000017493) #22 St8sia5 (ENSRNOG00000022691) #23 Loxhd1 (ENSRNOG00000017410) #24 Rnf165 (ENSRNOG00000048824) #25 RGD1308601 (ENSRNOG00000017215) #26 ENSRNOG00000063575 Haus1 (ENSRNOG00000017067) #27 Atp5f1a (ENSRNOG00000017032) #28 Pstpip2 (ENSRNOG00000016987) #29 Epg5 (ENSRNOG00000052894) #30 Siglec15 (ENSRNOG00000033588) #31 Slc14a1 (ENSRNOG00000016753) #32 Slc14a2 (ENSRNOG00000061714) #33 Setbp1 (ENSRNOG00000016208) #34 ENSRNOG00000065450 Pard6g (ENSRNOG00000055157) Mus ANCESTRAL SPECIES 19 ENSGT01100000263809 ENSGT00940000155402.a.b #9 ENSGT01030000234626.D #10 ENSGT00940000159394 #11 ENSGT00950000183010.a.b.a.b.b.b #12 ENSGT00390000018741 #13 ENSGT00390000008772 #14 ENSGT00940000159872 #15 ENSGT00940000153432.A.b #16 ENSGT00940000159814 #17 ENSGT00940000153499.a #18 ENSGT00940000160474 ENSGT00510000047648.c ENSGT00940000155805 #20 ENSGT00940000157302 #21 ENSGT01030000234539.a.a.b.b #22 ENSGT01030000234535.C #23 ENSGT00390000018830 #24 ENSGT00940000156997 #25 ENSGT00390000016167 #26 ENSGT00390000006029 #27 ENSGT00550000074846 #28 ENSGT00940000158788 #29 ENSGT00390000007354 #30 ENSGT01080000257333.E.o.a #31 ENSGT00390000018729.a.a #32 ENSGT00390000018729.a.b #33 ENSGT00940000158784 #34 ENSGT00950000183211.a.b ENSGT00530000063631.a ENSGT00390000011362 Shrew mouse MODERN SPECIES 6 Cfap53 (MGP_PahariEiJ_G0019129) Myo5b (MGP_PahariEiJ_G0019130) #9 Acaa2 (MGP_PahariEiJ_G0019131) #10 Lipg (MGP_PahariEiJ_G0019132) #11 Rpl17 (MGP_PahariEiJ_G0019133) #12 BC031181 (MGP_PahariEiJ_G0019134) #13 Dym (MGP_PahariEiJ_G0019135) #14 Smad7 (MGP_PahariEiJ_G0019136) #15 Ctif (MGP_PahariEiJ_G0019137) #16 Zbtb7c (MGP_PahariEiJ_G0019138) #17 Smad2 (MGP_PahariEiJ_G0019139) #18 Skor2 (MGP_PahariEiJ_G0019140) MGP_PahariEiJ_G0019141 Hdhd2 (MGP_PahariEiJ_G0019142) #20 Katnal2 (MGP_PahariEiJ_G0019143) #21 Pias2 (MGP_PahariEiJ_G0019144) #22 MGP_PahariEiJ_G0019145 St8sia5 (MGP_PahariEiJ_G0019146) #23 MGP_PahariEiJ_G0019147 #24 Rnf165 (MGP_PahariEiJ_G0019148) #25 8030462N17Rik (MGP_PahariEiJ_G0019149) #26 Haus1 (MGP_PahariEiJ_G0019150) #27 Atp5a1 (MGP_PahariEiJ_G0019151) #28 Pstpip2 (MGP_PahariEiJ_G0019152) #29 Epg5 (MGP_PahariEiJ_G0019153) #30 Siglec15 (MGP_PahariEiJ_G0019154) #31 Slc14a1 (MGP_PahariEiJ_G0019155) #32 Slc14a2 (MGP_PahariEiJ_G0019156) #33 MGP_PahariEiJ_G0019157 ##12 Setbp1 (MGP_PahariEiJ_G0019158) #34 Pard6g (MGP_PahariEiJ_G0019159) Mus_A ANCESTRAL SPECIES 19 ENSGT01100000263809 ENSGT00940000155402.a.b #9 ENSGT01030000234626.D #10 ENSGT00940000159394 #11 ENSGT00950000183010.a.b.a.b.b.b #12 ENSGT00390000018741 #13 ENSGT00390000008772 #14 ENSGT00940000159872 #15 ENSGT00940000153432.A.b #16 ENSGT00940000159814 #17 ENSGT00940000153499.a #18 ENSGT00940000160474 ENSGT00510000047648.c ENSGT00940000155805 #20 ENSGT00940000157302 #21 ENSGT01030000234539.a.a.b.b #22 ENSGT01030000234535.C #23 ENSGT00390000018830 #24 ENSGT00940000156997 #25 ENSGT00390000016167 #26 ENSGT00390000006029 #27 ENSGT00550000074846 #28 ENSGT00940000158788 #29 ENSGT00390000007354 #30 ENSGT01080000257333.E.o.a #31 ENSGT00390000018729.a.a #32 ENSGT00390000018729.a.b #33 ENSGT00940000158784 #34 ENSGT00950000183211.a.b ENSGT01100000265037 ENSGT00530000063631.a Ryukyu mouse MODERN SPECIES 9 Cfap53 (MGP_CAROLIEiJ_G0022400) Myo5b (MGP_CAROLIEiJ_G0022401) #9 Acaa2 (MGP_CAROLIEiJ_G0022402) #10 Lipg (MGP_CAROLIEiJ_G0022403) #11 Rpl17 (MGP_CAROLIEiJ_G0022404) #12 BC031181 (MGP_CAROLIEiJ_G0022405) #13 Dym (MGP_CAROLIEiJ_G0022406) #14 Smad7 (MGP_CAROLIEiJ_G0022407) #15 Ctif (MGP_CAROLIEiJ_G0022408) #16 Zbtb7c (MGP_CAROLIEiJ_G0022409) #17 Smad2 (MGP_CAROLIEiJ_G0022410) #18 Skor2 (MGP_CAROLIEiJ_G0022411) MGP_CAROLIEiJ_G0022412 Hdhd2 (MGP_CAROLIEiJ_G0022413) #20 Katnal2 (MGP_CAROLIEiJ_G0022414) #21 Pias2 (MGP_CAROLIEiJ_G0022415) #22 MGP_CAROLIEiJ_G0022416 St8sia5 (MGP_CAROLIEiJ_G0022417) #23 Loxhd1 (MGP_CAROLIEiJ_G0022418) #24 Rnf165 (MGP_CAROLIEiJ_G0022419) #25 8030462N17Rik (MGP_CAROLIEiJ_G0022420) #26 Haus1 (MGP_CAROLIEiJ_G0022421) #27 Atp5a1 (MGP_CAROLIEiJ_G0022422) #28 Pstpip2 (MGP_CAROLIEiJ_G0022423) #29 MGP_CAROLIEiJ_G0022424 #30 Siglec15 (MGP_CAROLIEiJ_G0022425) #31 Slc14a1 (MGP_CAROLIEiJ_G0022426) #32 Slc14a2 (MGP_CAROLIEiJ_G0022427) #33 MGP_CAROLIEiJ_G0022428 ##12 Setbp1 (MGP_CAROLIEiJ_G0022429) #34 Pard6g (MGP_CAROLIEiJ_G0022430) Mus_B ANCESTRAL SPECIES 19 ENSGT01100000263809 ENSGT00940000155402.a.b #9 ENSGT01030000234626.D #10 ENSGT00940000159394 #11 ENSGT00950000183010.a.b.a.b.b.b #12 ENSGT00390000018741 #13 ENSGT00390000008772 #14 ENSGT00940000159872 #15 ENSGT00940000153432.A.b #16 ENSGT00940000159814 #17 ENSGT00940000153499.a #18 ENSGT00940000160474 ENSGT00510000047648.c ENSGT00940000155805 #20 ENSGT00940000157302 #21 ENSGT01030000234539.a.a.b.b #22 ENSGT01030000234535.C #23 ENSGT00390000018830 #24 ENSGT00940000156997 #25 ENSGT00390000016167 #26 ENSGT00390000006029 #27 ENSGT00550000074846 #28 ENSGT00940000158788 #29 ENSGT00390000007354 #30 ENSGT01080000257333.E.o.a #31 ENSGT00390000018729.a.a #32 ENSGT00390000018729.a.b #33 ENSGT00950000183010.a.b.a.a.a.a.a.b.l.d ##12 ENSGT00940000158784 #34 ENSGT00950000183211.a.b ENSGT01100000265037 Mouse MODERN SPECIES 9 Cfap53 (ENSMUSG00000035394) Myo5b (ENSMUSG00000025885) #9 Acaa2 (ENSMUSG00000036880) #10 Lipg (ENSMUSG00000053846) #11 Rpl17 (ENSMUSG00000062328) #12 BC031181 (ENSMUSG00000036299) #13 Dym (ENSMUSG00000035765) #14 Smad7 (ENSMUSG00000025880) #15 Ctif (ENSMUSG00000052928) #16 Zbtb7c (ENSMUSG00000044646) #17 Smad2 (ENSMUSG00000024563) #18 Skor2 (ENSMUSG00000091519) Ier3ip1 (ENSMUSG00000090000) #19 Hdhd2 (ENSMUSG00000025421) #20 Katnal2 (ENSMUSG00000025420) #21 Pias2 (ENSMUSG00000025423) #22 St8sia5 (ENSMUSG00000025425) #23 Loxhd1 (ENSMUSG00000032818) #24 Rnf165 (ENSMUSG00000025427) #25 8030462N17Rik (ENSMUSG00000047466) #26 Haus1 (ENSMUSG00000041840) #27 Atp5a1 (ENSMUSG00000025428) #28 Pstpip2 (ENSMUSG00000025429) #29 Epg5 (ENSMUSG00000039840) #30 Siglec15 (ENSMUSG00000091055) #31 Slc14a1 (ENSMUSG00000059336) #32 Slc14a2 (ENSMUSG00000024552) #33 Gm6133 (ENSMUSG00000090451) ##12 Setbp1 (ENSMUSG00000024548) #34 Pard6g (ENSMUSG00000056214) Adnp2 (ENSMUSG00000053950) Mus_C ANCESTRAL SPECIES 16 ENSGT01100000263809 ENSGT00940000155402.a.b #9 ENSGT01030000234626.D #10 ENSGT00940000159394 #11 ENSGT00950000183010.a.b.a.b.b.b #12 ENSGT00390000018741 #13 ENSGT00390000008772 #14 ENSGT00940000159872 #15 ENSGT00940000153432.A.b #16 ENSGT00940000159814 #17 ENSGT00940000153499.a #18 ENSGT00940000160474 ENSGT00510000047648.c ENSGT00940000155805 #20 ENSGT00940000157302 #21 ENSGT01030000234539.a.a.b.b #22 ENSGT01030000234535.C #23 ENSGT00390000018830 #24 ENSGT00940000156997 #25 ENSGT00390000016167 #26 ENSGT00390000006029 #27 ENSGT00550000074846 #28 ENSGT00940000158788 #29 ENSGT00390000007354 #30 ENSGT01080000257333.E.o.a #31 ENSGT00390000018729.a.a #32 ENSGT00390000018729.a.b #33 ENSGT00950000183010.a.b.a.a.a.a.a.b.l.d ##12 ENSGT00940000158784 #34 ENSGT00950000183211.a.b ENSGT01100000265037 spretus MODERN SPECIES 9 Cfap53 (MGP_SPRETEiJ_G0023313) Myo5b (MGP_SPRETEiJ_G0023314) #9 Acaa2 (MGP_SPRETEiJ_G0023315) #10 Lipg (MGP_SPRETEiJ_G0023316) #11 MGP_SPRETEiJ_G0023317 ##12 BC031181 (MGP_SPRETEiJ_G0023318) #13 Dym (MGP_SPRETEiJ_G0023319) #14 Smad7 (MGP_SPRETEiJ_G0023320) #15 Ctif (MGP_SPRETEiJ_G0023321) #16 Zbtb7c (MGP_SPRETEiJ_G0023322) #17 Smad2 (MGP_SPRETEiJ_G0023323) #18 Skor2 (MGP_SPRETEiJ_G0023324) MGP_SPRETEiJ_G0023325 Hdhd2 (MGP_SPRETEiJ_G0023326) #20 Katnal2 (MGP_SPRETEiJ_G0023327) #21 Pias2 (MGP_SPRETEiJ_G0023328) #22 MGP_SPRETEiJ_G0023329 St8sia5 (MGP_SPRETEiJ_G0023330) #23 Loxhd1 (MGP_SPRETEiJ_G0023331) #24 8030462N17Rik (MGP_SPRETEiJ_G0023333) #26 Haus1 (MGP_SPRETEiJ_G0023334) #27 Atp5a1 (MGP_SPRETEiJ_G0023335) #28 Pstpip2 (MGP_SPRETEiJ_G0023336) #29 Epg5 (MGP_SPRETEiJ_G0023337) #30 Siglec15 (MGP_SPRETEiJ_G0023338) #31 Slc14a1 (MGP_SPRETEiJ_G0023339) #32 Slc14a2 (MGP_SPRETEiJ_G0023340) #33 MGP_SPRETEiJ_G0023341 ##12 Setbp1 (MGP_SPRETEiJ_G0023342) #34 Eola1 (MGP_SPRETEiJ_G0023343) MGP_SPRETEiJ_G0023344 Steppe mouse DUPLICATION Steppe mouse MODERN SPECIES 2730 ENSMSIG00000031992 #22 St8sia5 (ENSMSIG00000031990) #23 Loxhd1 (ENSMSIG00000031989) #24 Rnf165 (ENSMSIG00000031988) #25 8030462N17Rik (ENSMSIG00000031987) #26 Haus1 (ENSMSIG00000031985) #27 Atp5a1 (ENSMSIG00000031984) #28 Pstpip2 (ENSMSIG00000031982) #29 Steppe mouse MODERN SPECIES 3130 Lipg (ENSMSIG00000019321) #11 Rpl17 (ENSMSIG00000019275) #12 BC031181 (ENSMSIG00000019259) #13 ENSMSIG00000019247 Dym (ENSMSIG00000019180) #14 Smad7 (ENSMSIG00000019123) #15 ENSMSIG00000019110 Ctif (ENSMSIG00000019005) #16 Zbtb7c (ENSMSIG00000018967) #17 ENSMSIG00000018946 Smad2 (ENSMSIG00000018887) #18 Skor2 (ENSMSIG00000018834) ENSMSIG00000018819 Hdhd2 (ENSMSIG00000018790) #20 Katnal2 (ENSMSIG00000018633) #21 ENSMSIG00000018626 #22 Lagomorpha ANCESTRAL SPECIES 29 ENSGT00940000155402.a.b #9 ENSGT01030000234626.D #10 ENSGT00940000159394 #11 ENSGT00950000183010.a.b.a.a.a.a.b.k ##12 ENSGT00390000018741 #13 ENSGT00390000008772 #14 ENSGT00940000159872 #15 ENSGT00940000153432.A.b #16 ENSGT00940000159814 #17 ENSGT00940000153499.a #18 ENSGT00940000160474 ENSGT00510000047648 ENSGT00940000155805 #20 ENSGT00940000157302 #21 ENSGT00390000002428.a.g.b ENSGT01030000234539.a.a.b.b #22 ENSGT01030000234535.C #23 ENSGT00390000018830 #24 ENSGT00940000156997 #25 ENSGT00390000016167 #26 ENSGT00390000006029 #27 ENSGT00550000074846 #28 ENSGT00940000158788 #29 ENSGT00390000007354 #30 ENSGT01080000257333.E.o.a #31 ENSGT00390000018729.a.a #32 ENSGT00390000018729.a.b #33 ENSGT00940000158784 #34 ENSGT00940000159026 #35 ENSGT00940000161402 #36 ENSGT00940000156943 Rabbit MODERN SPECIES 20 ENSOCUG00000012485 ##12 ENSOCUG00000027094 #13 ENSOCUG00000038051 DYM (ENSOCUG00000015851) #14 SMAD7 (ENSOCUG00000024309) #15 CTIF (ENSOCUG00000024842) #16 ENSOCUG00000026631 ZBTB7C (ENSOCUG00000022348) #17 SMAD2 (ENSOCUG00000011290) #18 ENSOCUG00000027573 IER3IP1 (ENSOCUG00000012555) HDHD2 (ENSOCUG00000006979) #20 ENSOCUG00000035984 ENSOCUG00000006940 KATNAL2 (ENSOCUG00000006971) #21 PIAS2 (ENSOCUG00000006900) #22 ENSOCUG00000033989 #24 RNF165 (ENSOCUG00000011801) #25 C18orf25 (ENSOCUG00000009573) #26 HAUS1 (ENSOCUG00000017483) #27 ENSOCUG00000003967 #28 PSTPIP2 (ENSOCUG00000000324) #29 EPG5 (ENSOCUG00000003950) #30 SIGLEC15 (ENSOCUG00000023340) #31 SLC14A1 (ENSOCUG00000006758) #32 ENSOCUG00000006749 #33 SETBP1 (ENSOCUG00000009706) #34 SYT4 (ENSOCUG00000009669) #35 RIT2 (ENSOCUG00000003652) #36 PIK3C3 (ENSOCUG00000009451) ENSOCUG00000039403 Pika MODERN SPECIES 4011 ENSOPRG00000006243 #22