Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000155245 #22
Gnathostomata	ANCESTRAL SPECIES	39	ENSGT00940000166242	ENSGT00940000158983	ENSGT00950000182924.A.b.a.a	ENSGT00950000183054.b	ENSGT00950000183027.a.b	ENSGT00940000155571.B	ENSGT00940000167270	ENSGT01000000215701	ENSGT00940000158120	ENSGT00940000156925	ENSGT00940000154518.b	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163216	ENSGT00950000182924.B.b	ENSGT00940000164397.a	ENSGT00390000014627 #7	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879
Euteleostomi	ANCESTRAL SPECIES	517												ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00940000156695 #24
Sarcopterygii	ANCESTRAL SPECIES	29	ENSGT00940000164397.a	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00390000005448 #14	ENSGT00940000158426 #16	ENSGT00940000165645	ENSGT00730000111645	ENSGT00390000011412	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00940000156695 #24	ENSGT00940000161045 #25	ENSGT00390000004582	ENSGT00940000158120	ENSGT00940000155571.A	ENSGT00940000155571.B	ENSGT00950000183027.a.b	ENSGT00950000183054.b	ENSGT00950000182924.A.b.a.a	ENSGT00940000158983	ENSGT00390000007683	ENSGT00940000166242	ENSGT00940000156999	ENSGT00940000156237
Tetrapoda	ANCESTRAL SPECIES	35	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00940000158426 #16	ENSGT00940000165645	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00940000156695 #24	ENSGT00940000161045 #25	ENSGT00390000004582	ENSGT00940000158120	ENSGT00940000154865	ENSGT01000000215701	ENSGT00940000155571.A	ENSGT00940000155571.B	ENSGT00950000183027.a.b	ENSGT00950000183054.b	ENSGT00950000182924.A.b.a.a	ENSGT00940000158983	ENSGT00390000007683	ENSGT00940000166242
Amniota	ANCESTRAL SPECIES	10	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00940000158426 #16	ENSGT00940000165645	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00940000156695.e.b ##24	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00390000004582	ENSGT00940000158120	ENSGT00940000154865	ENSGT01000000215701	ENSGT00940000154340.B	ENSGT00940000163077	ENSGT00940000170705	ENSGT00940000157973	ENSGT00940000155512	ENSGT00950000182787.A	ENSGT00950000182787.B
Mammalia	ANCESTRAL SPECIES	34	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00390000015361
Theria	ANCESTRAL SPECIES	21	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163216	ENSGT00940000155245 #22	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00390000015361
Eutheria	ANCESTRAL SPECIES	13	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00390000015361
Boreoeutheria	ANCESTRAL SPECIES	16	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00980000202026	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147834	ENSGT00940000164185	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37
Euarchontoglires	ANCESTRAL SPECIES	16	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00980000202026	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147834	ENSGT00940000164185	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37
Primates	ANCESTRAL SPECIES	16	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00980000202026	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00900000143735	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147834	ENSGT00940000164185	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37
Strepsirrhini	ANCESTRAL SPECIES	11	ENSGT00910000146657	ENSGT00940000155276.x.a #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00490000043902	ENSGT00900000143735	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36
Lemuriformes	ANCESTRAL SPECIES	7	ENSGT00910000146657	ENSGT00940000155276.x.a #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00900000143735	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37
Mouse lemur	MODERN SPECIES	6	TYSND1 (ENSMICG00000035296) #7	SAR1A (ENSMICG00000001638) #8	ENSMICG00000029937 #9	NPFFR1 (ENSMICG00000045660) #10	LRRC20 (ENSMICG00000015067) #11	ENSMICG00000043210 #12	NODAL (ENSMICG00000015080) #13	PALD1 (ENSMICG00000015086) #14	PRF1 (ENSMICG00000028747) #15	ADAMTS14 (ENSMICG00000015113) #16	TBATA (ENSMICG00000015129) #17	SGPL1 (ENSMICG00000015141) #18	PCBD1 (ENSMICG00000015152) #19	UNC5B (ENSMICG00000017152) #20	SLC29A3 (ENSMICG00000037185) #21	CDH23 (ENSMICG00000000081) #22	VSIR (ENSMICG00000000086) #23	PSAP (ENSMICG00000000087) #24	CHST3 (ENSMICG00000004209) #25	ENSMICG00000045082 #26	SPOCK2 (ENSMICG00000004214) #27	ASCC1 (ENSMICG00000004222) #28	ANAPC16 (ENSMICG00000004229) #29	DDIT4 (ENSMICG00000034685) #30	DNAJB12 (ENSMICG00000033013) #31	MICU1 (ENSMICG00000004242) #32	ENSMICG00000046862 #33	MCU (ENSMICG00000007140) #34	OIT3 (ENSMICG00000007147) #35	PLA2G12B (ENSMICG00000034295) #36	P4HA1 (ENSMICG00000031365) #37
Lemuriformes_a	ANCESTRAL SPECIES	48	ENSGT00910000146657	ENSGT00940000155276.x.a #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00900000143735	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37
Coquerels sifaka	MODERN SPECIES	928																CDH23 (ENSPCOG00000026383) #22	ENSPCOG00000014299	PSAP (ENSPCOG00000010538) #24	ENSPCOG00000017784	SPOCK2 (ENSPCOG00000021843) #27	ASCC1 (ENSPCOG00000017110) #28	ANAPC16 (ENSPCOG00000014013) #29	DDIT4 (ENSPCOG00000021452) #30	DNAJB12 (ENSPCOG00000018824) #31	MICU1 (ENSPCOG00000003632) #32	MCU (ENSPCOG00000024537) #34	OIT3 (ENSPCOG00000014169) #35	PLA2G12B (ENSPCOG00000018387) #36	P4HA1 (ENSPCOG00000017553) #37	ENSPCOG00000016372	NUDT13 (ENSPCOG00000019806)
Greater bamboo lemur	MODERN SPECIES	6															SLC29A3 (ENSPSMG00000006116) #21	CDH23 (ENSPSMG00000006252) #22	C10orf105 (ENSPSMG00000006420)	ENSPSMG00000006424	VSIR (ENSPSMG00000006458) #23	PSAP (ENSPSMG00000006522) #24	CHST3 (ENSPSMG00000006542) #25	SPOCK2 (ENSPSMG00000006568) #27	ASCC1 (ENSPSMG00000006613) #28	ANAPC16 (ENSPSMG00000006636) #29	DDIT4 (ENSPSMG00000006646) #30	DNAJB12 (ENSPSMG00000006669) #31	MICU1 (ENSPSMG00000006870) #32	ENSPSMG00000007007	ENSPSMG00000007010	MCU (ENSPSMG00000007020) #34	OIT3 (ENSPSMG00000007036) #35
Bushbaby	MODERN SPECIES	123	PPA1 (ENSOGAG00000013529) #9	NPFFR1 (ENSOGAG00000032350) #10	ENSOGAG00000031126	LRRC20 (ENSOGAG00000010085) #11	EIF4EBP2 (ENSOGAG00000005714) #12	NODAL (ENSOGAG00000005716) #13	PALD1 (ENSOGAG00000005717) #14	PRF1 (ENSOGAG00000028301) #15	ADAMTS14 (ENSOGAG00000013558) #16	TBATA (ENSOGAG00000013573) #17	SGPL1 (ENSOGAG00000006188) #18	PCBD1 (ENSOGAG00000006192) #19	UNC5B (ENSOGAG00000000567) #20	SLC29A3 (ENSOGAG00000011903) #21	C10orf105 (ENSOGAG00000028752)	ENSOGAG00000011907 #22	ENSOGAG00000011923	PSAP (ENSOGAG00000011925) #24	ENSOGAG00000025801	SPOCK2 (ENSOGAG00000009388) #27	ASCC1 (ENSOGAG00000008212) #28	ENSOGAG00000008215 #29	DDIT4 (ENSOGAG00000032349) #30	DNAJB12 (ENSOGAG00000013698) #31	ENSOGAG00000030975	MICU1 (ENSOGAG00000008987) #32	MCU (ENSOGAG00000003478) #34	OIT3 (ENSOGAG00000003479) #35	PLA2G12B (ENSOGAG00000003482) #36	P4HA1 (ENSOGAG00000003483) #37	NUDT13 (ENSOGAG00000003486)
Haplorrhini	ANCESTRAL SPECIES	11	ENSGT00940000155342 #12	ENSGT00980000202026	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163216	ENSGT00900000143735	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147834	ENSGT00940000164185	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879
Simiiformes	ANCESTRAL SPECIES	17	ENSGT00980000202026	ENSGT00940000155342.l #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163216	ENSGT00900000143735	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147834	ENSGT00940000164185	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590.h #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879
Catarrhini	ANCESTRAL SPECIES	18	ENSGT00980000202026	ENSGT00940000155342.k.a.a #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00910000147560	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00900000143735	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147223	ENSGT00910000147834	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590.h #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879
Hominoidea	ANCESTRAL SPECIES	11	ENSGT00530000063695.b.b	ENSGT00940000155342.k.b #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00910000147560	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00900000143735	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147223	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590.h #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00390000015361
Hominidae	ANCESTRAL SPECIES	13	ENSGT00730000111199 #11	ENSGT00530000063695.b.b	ENSGT00940000155342.k.b #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00900000143735	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147223	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590.h #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00390000015361
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	17	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00530000063695.b.a.b	ENSGT00940000155342.k.b #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147223	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590.h #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00390000015361
Homo/Pan group	ANCESTRAL SPECIES	18	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00530000063695.b.a.b	ENSGT00940000155342.k.b #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147223	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590.h #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00390000015361
Pan	ANCESTRAL SPECIES	16	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00530000063695.b.a.b	ENSGT00940000155342.k.b #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147223	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590.h #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00390000015361
Chimpanzee	MODERN SPECIES	1	SAR1A (ENSPTRG00000002584) #8	PPA1 (ENSPTRG00000002585) #9	NPFFR1 (ENSPTRG00000002586) #10	LRRC20 (ENSPTRG00000002588) #11	ENSPTRG00000048298	EIF4EBP2 (ENSPTRG00000002590) #12	NODAL (ENSPTRG00000002592) #13	PALD1 (ENSPTRG00000002594) #14	PRF1 (ENSPTRG00000002595) #15	ADAMTS14 (ENSPTRG00000002596) #16	TBATA (ENSPTRG00000002597) #17	SGPL1 (ENSPTRG00000002598) #18	PCBD1 (ENSPTRG00000002599) #19	UNC5B (ENSPTRG00000002600) #20	SLC29A3 (ENSPTRG00000023469) #21	CDH23 (ENSPTRG00000002603) #22	C10H10orf105 (ENSPTRG00000045172)	VSIR (ENSPTRG00000002605) #23	PSAP (ENSPTRG00000023687) #24	CHST3 (ENSPTRG00000002607) #25	SPOCK2 (ENSPTRG00000002608) #27	ASCC1 (ENSPTRG00000002609) #28	ANAPC16 (ENSPTRG00000045745) #29	DDIT4 (ENSPTRG00000002611) #30	DNAJB12 (ENSPTRG00000002613) #31	MICU1 (ENSPTRG00000002615) #32	ENSPTRG00000045880	MCU (ENSPTRG00000022948) #34	OIT3 (ENSPTRG00000002617) #35	PLA2G12B (ENSPTRG00000002618) #36	P4HA1 (ENSPTRG00000002619) #37
Bonobo	MODERN SPECIES	1	SAR1A (ENSPPAG00000031193) #8	PPA1 (ENSPPAG00000031831) #9	ENSPPAG00000040679 #10	LRRC20 (ENSPPAG00000040023) #11	ENSPPAG00000033857	ENSPPAG00000022070 #12	NODAL (ENSPPAG00000032411) #13	PALD1 (ENSPPAG00000035351) #14	PRF1 (ENSPPAG00000041405) #15	ADAMTS14 (ENSPPAG00000027974) #16	TBATA (ENSPPAG00000041040) #17	SGPL1 (ENSPPAG00000035785) #18	PCBD1 (ENSPPAG00000038635) #19	UNC5B (ENSPPAG00000035322) #20	SLC29A3 (ENSPPAG00000033339) #21	CDH23 (ENSPPAG00000030558) #22	VSIR (ENSPPAG00000031574) #23	PSAP (ENSPPAG00000036888) #24	CHST3 (ENSPPAG00000040452) #25	ENSPPAG00000034230	SPOCK2 (ENSPPAG00000037477) #27	ASCC1 (ENSPPAG00000039805) #28	ANAPC16 (ENSPPAG00000039087) #29	DDIT4 (ENSPPAG00000026679) #30	DNAJB12 (ENSPPAG00000036285) #31	MICU1 (ENSPPAG00000030274) #32	MCU (ENSPPAG00000036235) #34	OIT3 (ENSPPAG00000028403) #35	PLA2G12B (ENSPPAG00000028752) #36	P4HA1 (ENSPPAG00000030135) #37	NUDT13 (ENSPPAG00000029827)
Human	MODERN SPECIES	1	TYSND1 (ENSG00000156521) #7	SAR1A (ENSG00000079332) #8	PPA1 (ENSG00000180817) #9	NPFFR1 (ENSG00000148734) #10	LRRC20 (ENSG00000172731) #11	EIF4EBP2 (ENSG00000148730) #12	NODAL (ENSG00000156574) #13	PALD1 (ENSG00000107719) #14	PRF1 (ENSG00000180644) #15	ADAMTS14 (ENSG00000138316) #16	TBATA (ENSG00000166220) #17	SGPL1 (ENSG00000166224) #18	PCBD1 (ENSG00000166228) #19	UNC5B (ENSG00000107731) #20	SLC29A3 (ENSG00000198246) #21	CDH23 (ENSG00000107736) #22	C10orf105 (ENSG00000214688)	VSIR (ENSG00000107738) #23	PSAP (ENSG00000197746) #24	CHST3 (ENSG00000122863) #25	SPOCK2 (ENSG00000107742) #27	ASCC1 (ENSG00000138303) #28	ANAPC16 (ENSG00000166295) #29	DDIT4 (ENSG00000168209) #30	DNAJB12 (ENSG00000148719) #31	MICU1 (ENSG00000107745) #32	MCU (ENSG00000156026) #34	OIT3 (ENSG00000138315) #35	PLA2G12B (ENSG00000138308) #36	P4HA1 (ENSG00000122884) #37	NUDT13 (ENSG00000166321)
Gorilla	MODERN SPECIES	1	NPFFR1 (ENSGGOG00000014103) #10	LRRC20 (ENSGGOG00000014113) #11	ENSGGOG00000042114	EIF4EBP2 (ENSGGOG00000036271) #12	NODAL (ENSGGOG00000002581) #13	PALD1 (ENSGGOG00000004747) #14	PRF1 (ENSGGOG00000001909) #15	ADAMTS14 (ENSGGOG00000012358) #16	TBATA (ENSGGOG00000012387) #17	SGPL1 (ENSGGOG00000016655) #18	PCBD1 (ENSGGOG00000013985) #19	UNC5B (ENSGGOG00000011623) #20	SLC29A3 (ENSGGOG00000000803) #21	C10orf105 (ENSGGOG00000037482)	VSIR (ENSGGOG00000008426) #23	CDH23 (ENSGGOG00000008379) #22	PSAP (ENSGGOG00000008433) #24	CHST3 (ENSGGOG00000043006) #25	ENSGGOG00000036638	SPOCK2 (ENSGGOG00000023784) #27	ASCC1 (ENSGGOG00000007559) #28	ENSGGOG00000007567 #29	DDIT4 (ENSGGOG00000002759) #30	DNAJB12 (ENSGGOG00000000683) #31	ENSGGOG00000024986	MICU1 (ENSGGOG00000004841) #32	ENSGGOG00000023366 #34	ENSGGOG00000026297	OIT3 (ENSGGOG00000012768) #35	PLA2G12B (ENSGGOG00000012772) #36	P4HA1 (ENSGGOG00000015551) #37
Orangutan	MODERN SPECIES	1	LRRC20 (ENSPPYG00000002372) #11	ENSPPYG00000038976	EIF4EBP2 (ENSPPYG00000002371) #12	NODAL (ENSPPYG00000002370) #13	PALD1 (ENSPPYG00000002369) #14	PRF1 (ENSPPYG00000002368) #15	ADAMTS14 (ENSPPYG00000002367) #16	TBATA (ENSPPYG00000002366) #17	SGPL1 (ENSPPYG00000002364) #18	PCBD1 (ENSPPYG00000002363) #19	UNC5B (ENSPPYG00000002362) #20	SLC29A3 (ENSPPYG00000002361) #21	C10orf105 (ENSPPYG00000002360)	ENSPPYG00000032725	VSIR (ENSPPYG00000025864) #23	CDH23 (ENSPPYG00000002359) #22	PSAP (ENSPPYG00000002357) #24	CHST3 (ENSPPYG00000039757) #25	SPOCK2 (ENSPPYG00000029592) #27	ENSPPYG00000002356 #28	ANAPC16 (ENSPPYG00000002355) #29	DDIT4 (ENSPPYG00000002354) #30	DNAJB12 (ENSPPYG00000002353) #31	MICU1 (ENSPPYG00000002352) #32	ENSPPYG00000030024	MCU (ENSPPYG00000002351) #34	OIT3 (ENSPPYG00000002350) #35	PLA2G12B (ENSPPYG00000002349) #36	P4HA1 (ENSPPYG00000002348) #37	NUDT13 (ENSPPYG00000002346)	ECD (ENSPPYG00000002345)
Gibbon	MODERN SPECIES	8	PPA1 (ENSNLEG00000016098) #9	NPFFR1 (ENSNLEG00000016116) #10	ENSNLEG00000031664 #11	ENSNLEG00000035303	ENSNLEG00000016121 #12	NODAL (ENSNLEG00000016126) #13	PALD1 (ENSNLEG00000016133) #14	ENSNLEG00000036037	PRF1 (ENSNLEG00000016140) #15	ADAMTS14 (ENSNLEG00000016144) #16	TBATA (ENSNLEG00000016173) #17	SGPL1 (ENSNLEG00000016177) #18	PCBD1 (ENSNLEG00000016186) #19	UNC5B (ENSNLEG00000016277) #20	SLC29A3 (ENSNLEG00000016293) #21	CDH23 (ENSNLEG00000016188) #22	VSIR (ENSNLEG00000032028) #23	PSAP (ENSNLEG00000016317) #24	CHST3 (ENSNLEG00000016376) #25	SPOCK2 (ENSNLEG00000016379) #27	ASCC1 (ENSNLEG00000016392) #28	ANAPC16 (ENSNLEG00000016411) #29	DDIT4 (ENSNLEG00000016416) #30	DNAJB12 (ENSNLEG00000016428) #31	MICU1 (ENSNLEG00000016433) #32	ENSNLEG00000030767	MCU (ENSNLEG00000016456) #34	OIT3 (ENSNLEG00000016468) #35	ENSNLEG00000016500	PLA2G12B (ENSNLEG00000016502) #36	P4HA1 (ENSNLEG00000035416) #37
Cercopithecidae	ANCESTRAL SPECIES	15	ENSGT00940000155342.k.b #12	ENSGT00980000202026	ENSGT00940000155342.k.a.a #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00910000147560	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147223	ENSGT00910000147834	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590.h #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879
Cercopithecinae	ANCESTRAL SPECIES	15	ENSGT00940000155342.k.b #12	ENSGT00980000202026	ENSGT00940000155342.k.a.a #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00910000147560	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147223	ENSGT00910000147834	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590.h #31	ENSGT00950000183079.B.d #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879
Cercopithecinae_a	ANCESTRAL SPECIES	14	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342.k.b #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00910000147560	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147223	ENSGT00910000147834	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590.h #31	ENSGT00950000183079.B.d #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879
Cercopithecinae_b	ANCESTRAL SPECIES	14	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342.k.b #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00910000147560	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590.h #31	ENSGT00950000183079.B.d #32	ENSGT00940000157528 #34	ENSGT00440000034918.q.b.a.b	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00390000015361
Cercopithecinae_d	ANCESTRAL SPECIES	39	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342.k.b #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00910000147560	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00900000143735	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147732	ENSGT00910000147834	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590.h #31	ENSGT00950000183079.B.d #32	ENSGT00940000157528 #34	ENSGT00440000034918.q.b.a.b	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37
Drill	MODERN SPECIES	1058	ENSMLEG00000043316	PPA1 (ENSMLEG00000042677) #9	ENSMLEG00000039663	NPFFR1 (ENSMLEG00000040395) #10	LRRC20 (ENSMLEG00000031698) #11	ENSMLEG00000034679 #12	NODAL (ENSMLEG00000031653) #13	PALD1 (ENSMLEG00000037106) #14	PRF1 (ENSMLEG00000028310) #15	ADAMTS14 (ENSMLEG00000040756) #16	TBATA (ENSMLEG00000030801) #17	SGPL1 (ENSMLEG00000037169) #18	PCBD1 (ENSMLEG00000043339) #19	UNC5B (ENSMLEG00000036840) #20	SLC29A3 (ENSMLEG00000039423) #21	CDH23 (ENSMLEG00000033521) #22	VSIR (ENSMLEG00000037776) #23	ENSMLEG00000033106	PSAP (ENSMLEG00000043054) #24	CHST3 (ENSMLEG00000040092) #25	ENSMLEG00000042384	ENSMLEG00000000083	SPOCK2 (ENSMLEG00000007328) #27	ASCC1 (ENSMLEG00000027895) #28	ANAPC16 (ENSMLEG00000035132) #29	DDIT4 (ENSMLEG00000041285) #30	DNAJB12 (ENSMLEG00000038357) #31	ENSMLEG00000028277 #32	MCU (ENSMLEG00000042381) #34	ENSMLEG00000023262	OIT3 (ENSMLEG00000023211) #35
Sooty mangabey	MODERN SPECIES	260	PPA1 (ENSCATG00000022364) #9	ENSCATG00000029578	NPFFR1 (ENSCATG00000045000) #10	LRRC20 (ENSCATG00000013053) #11	EIF4EBP2 (ENSCATG00000032356) #12	NODAL (ENSCATG00000037917) #13	PALD1 (ENSCATG00000011853) #14	ENSCATG00000035638	PRF1 (ENSCATG00000020126) #15	ADAMTS14 (ENSCATG00000044780) #16	TBATA (ENSCATG00000012597) #17	SGPL1 (ENSCATG00000039604) #18	PCBD1 (ENSCATG00000034057) #19	UNC5B (ENSCATG00000041425) #20	SLC29A3 (ENSCATG00000038777) #21	CDH23 (ENSCATG00000036516) #22	VSIR (ENSCATG00000041934) #23	ENSCATG00000037459	PSAP (ENSCATG00000037341) #24	CHST3 (ENSCATG00000042859) #25	ENSCATG00000017252	ENSCATG00000019332	SPOCK2 (ENSCATG00000014283) #27	ASCC1 (ENSCATG00000013018) #28	ANAPC16 (ENSCATG00000030193) #29	DDIT4 (ENSCATG00000044353) #30	DNAJB12 (ENSCATG00000035918) #31	ENSCATG00000041577 #32	MCU (ENSCATG00000035710) #34	ENSCATG00000015458	OIT3 (ENSCATG00000042249) #35
Olive baboon	MODERN SPECIES	2	TYSND1 (ENSPANG00000022248) #7	ENSPANG00000022249 #8	PPA1 (ENSPANG00000022268) #9	NPFFR1 (ENSPANG00000022264) #10	LRRC20 (ENSPANG00000022262) #11	EIF4EBP2 (ENSPANG00000048755) #12	NODAL (ENSPANG00000022260) #13	PALD1 (ENSPANG00000022258) #14	PRF1 (ENSPANG00000045329) #15	ADAMTS14 (ENSPANG00000022255) #16	TBATA (ENSPANG00000022302) #17	SGPL1 (ENSPANG00000022284) #18	PCBD1 (ENSPANG00000022281) #19	UNC5B (ENSPANG00000022279) #20	SLC29A3 (ENSPANG00000022277) #21	CDH23 (ENSPANG00000022272) #22	C10orf105 (ENSPANG00000048606)	VSIR (ENSPANG00000022276) #23	PSAP (ENSPANG00000022310) #24	CHST3 (ENSPANG00000022311) #25	SPOCK2 (ENSPANG00000022317) #27	ASCC1 (ENSPANG00000022316) #28	ANAPC16 (ENSPANG00000030424) #29	DDIT4 (ENSPANG00000031523) #30	DNAJB12 (ENSPANG00000022312) #31	MICU1 (ENSPANG00000022329) #32	MCU (ENSPANG00000022327) #34	ENSPANG00000040376	OIT3 (ENSPANG00000022326) #35	PLA2G12B (ENSPANG00000022324) #36	P4HA1 (ENSPANG00000022355) #37
Macaca	ANCESTRAL SPECIES	11	ENSGT00390000017004.a.b.m.a #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342.k.b #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147223	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590.h #31	ENSGT00950000183079.B.c #32	ENSGT00950000183079.B.d #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879
Pig-tailed macaque	MODERN SPECIES	353	ENSMNEG00000038291	PPA1 (ENSMNEG00000039051) #9	NPFFR1 (ENSMNEG00000043557) #10	LRRC20 (ENSMNEG00000028501) #11	EIF4EBP2 (ENSMNEG00000032389) #12	NODAL (ENSMNEG00000036384) #13	PALD1 (ENSMNEG00000034923) #14	PRF1 (ENSMNEG00000022959) #15	ADAMTS14 (ENSMNEG00000041214) #16	TBATA (ENSMNEG00000036766) #17	SGPL1 (ENSMNEG00000036166) #18	PCBD1 (ENSMNEG00000044928) #19	UNC5B (ENSMNEG00000041658) #20	SLC29A3 (ENSMNEG00000036547) #21	VSIR (ENSMNEG00000030639) #23	CDH23 (ENSMNEG00000045269) #22	PSAP (ENSMNEG00000044295) #24	CHST3 (ENSMNEG00000041252) #25	ENSMNEG00000012103	SPOCK2 (ENSMNEG00000044340) #27	ASCC1 (ENSMNEG00000036564) #28	ANAPC16 (ENSMNEG00000043234) #29	DDIT4 (ENSMNEG00000005990) #30	DNAJB12 (ENSMNEG00000039682) #31	MICU1 (ENSMNEG00000027750) #32	ENSMNEG00000034166	ENSMNEG00000024289	ENSMNEG00000040237	ENSMNEG00000017961	MCU (ENSMNEG00000038927) #34	OIT3 (ENSMNEG00000035358) #35
Macaca_a	ANCESTRAL SPECIES	13	ENSGT00730000111199 #11	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.b.a.a.a.a.b.a.b	ENSGT00940000155342.k.b #12	ENSGT01100000263577.a.a.b.b.a.a.b.b.a.a.b.b.b.a	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147223	ENSGT00910000147834	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590.h #31	ENSGT00950000183079.B.d #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879
Rhesus	MODERN SPECIES	19	LRRC20 (ENSMMUG00000014846) #11	ENSMMUG00000056761	EIF4EBP2 (ENSMMUG00000055936) #12	ENSMMUG00000054067	NODAL (ENSMMUG00000023171) #13	PALD1 (ENSMMUG00000021618) #14	PRF1 (ENSMMUG00000064708) #15	ADAMTS14 (ENSMMUG00000012330) #16	TBATA (ENSMMUG00000012333) #17	SGPL1 (ENSMMUG00000009800) #18	PCBD1 (ENSMMUG00000008789) #19	UNC5B (ENSMMUG00000005998) #20	SLC29A3 (ENSMMUG00000006433) #21	C9H10orf105 (ENSMMUG00000063575)	VSIR (ENSMMUG00000012967) #23	CDH23 (ENSMMUG00000014733) #22	PSAP (ENSMMUG00000012969) #24	CHST3 (ENSMMUG00000052336) #25	ENSMMUG00000052392	SPOCK2 (ENSMMUG00000002122) #27	ASCC1 (ENSMMUG00000009479) #28	ANAPC16 (ENSMMUG00000015600) #29	DDIT4 (ENSMMUG00000055226) #30	DNAJB12 (ENSMMUG00000010431) #31	MICU1 (ENSMMUG00000016963) #32	MCU (ENSMMUG00000020402) #34	OIT3 (ENSMMUG00000020404) #35	PLA2G12B (ENSMMUG00000020405) #36	P4HA1 (ENSMMUG00000011274) #37	NUDT13 (ENSMMUG00000011276)	ECD (ENSMMUG00000011280)
Crab-eating macaque	MODERN SPECIES	19	NPFFR1 (ENSMFAG00000043253) #10	LRRC20 (ENSMFAG00000041994) #11	ENSMFAG00000057854	EIF4EBP2 (ENSMFAG00000000143) #12	ENSMFAG00000055365	NODAL (ENSMFAG00000041504) #13	PALD1 (ENSMFAG00000039573) #14	PRF1 (ENSMFAG00000033010) #15	ADAMTS14 (ENSMFAG00000002509) #16	TBATA (ENSMFAG00000039238) #17	ENSMFAG00000063517	SGPL1 (ENSMFAG00000000706) #18	PCBD1 (ENSMFAG00000000150) #19	UNC5B (ENSMFAG00000043834) #20	SLC29A3 (ENSMFAG00000000250) #21	ENSMFAG00000003044 #22	VSIR (ENSMFAG00000031339) #23	PSAP (ENSMFAG00000031057) #24	CHST3 (ENSMFAG00000063998) #25	ENSMFAG00000048770	ENSMFAG00000052145	ENSMFAG00000054921	ENSMFAG00000060831	SPOCK2 (ENSMFAG00000038445) #27	ASCC1 (ENSMFAG00000042558) #28	ANAPC16 (ENSMFAG00000034172) #29	DDIT4 (ENSMFAG00000033307) #30	DNAJB12 (ENSMFAG00000043414) #31	MICU1 (ENSMFAG00000000891) #32	ENSMFAG00000008570	MCU (ENSMFAG00000035611) #34
Vervet Monkey	MODERN SPECIES	28	NPFFR1 (ENSCSAG00000008280) #10	LRRC20 (ENSCSAG00000008285) #11	EIF4EBP2 (ENSCSAG00000008294) #12	ENSCSAG00000018429	NODAL (ENSCSAG00000008299) #13	PALD1 (ENSCSAG00000008308) #14	PRF1 (ENSCSAG00000008314) #15	ADAMTS14 (ENSCSAG00000008357) #16	SGPL1 (ENSCSAG00000008393) #18	PCBD1 (ENSCSAG00000008401) #19	UNC5B (ENSCSAG00000008417) #20	SLC29A3 (ENSCSAG00000008424) #21	ENSCSAG00000008430	C10orf105 (ENSCSAG00000018428)	VSIR (ENSCSAG00000008444) #23	CDH23 (ENSCSAG00000008461) #22	PSAP (ENSCSAG00000008477) #24	CHST3 (ENSCSAG00000008485) #25	SPOCK2 (ENSCSAG00000008495) #27	ASCC1 (ENSCSAG00000008531) #28	ANAPC16 (ENSCSAG00000008552) #29	DDIT4 (ENSCSAG00000008557) #30	DNAJB12 (ENSCSAG00000008566) #31	MICU1 (ENSCSAG00000008577) #32	ENSCSAG00000008585	ENSCSAG00000018427	MCU (ENSCSAG00000008594) #34	OIT3 (ENSCSAG00000008603) #35	PLA2G12B (ENSCSAG00000008614) #36	P4HA1 (ENSCSAG00000008626) #37	NUDT13 (ENSCSAG00000008635)
Rhinopithecus	ANCESTRAL SPECIES	50	ENSGT00390000017004.a.b.m.a #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342.k.b #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00900000143735	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147732	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590.h #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00390000015361
Golden snub-nosed monkey	MODERN SPECIES	1711														UNC5B (ENSRROG00000029872) #20	SLC29A3 (ENSRROG00000027535) #21	CDH23 (ENSRROG00000032402) #22	VSIR (ENSRROG00000040606) #23	ENSRROG00000044593	PSAP (ENSRROG00000033645) #24	CHST3 (ENSRROG00000029327) #25	ENSRROG00000035598	SPOCK2 (ENSRROG00000033157) #27	ASCC1 (ENSRROG00000005189) #28	ANAPC16 (ENSRROG00000038072) #29	DDIT4 (ENSRROG00000025799) #30	DNAJB12 (ENSRROG00000030694) #31	MICU1 (ENSRROG00000043635) #32	ENSRROG00000024038	ENSRROG00000037322	MCU (ENSRROG00000044644) #34	OIT3 (ENSRROG00000031981) #35
Black snub-nosed monkey	MODERN SPECIES	1694								ADAMTS14 (ENSRBIG00000033426) #16	TBATA (ENSRBIG00000043906) #17	SGPL1 (ENSRBIG00000042789) #18	PCBD1 (ENSRBIG00000015076) #19	UNC5B (ENSRBIG00000037372) #20	SLC29A3 (ENSRBIG00000014221) #21	ENSRBIG00000041486	VSIR (ENSRBIG00000027499) #23	CDH23 (ENSRBIG00000043403) #22	PSAP (ENSRBIG00000034728) #24	CHST3 (ENSRBIG00000030269) #25	ENSRBIG00000038864	SPOCK2 (ENSRBIG00000037133) #27	ASCC1 (ENSRBIG00000033507) #28	ANAPC16 (ENSRBIG00000040076) #29	DDIT4 (ENSRBIG00000035542) #30	DNAJB12 (ENSRBIG00000044931) #31	MICU1 (ENSRBIG00000032172) #32	ENSRBIG00000044484	MCU (ENSRBIG00000037501) #34	OIT3 (ENSRBIG00000033379) #35	PLA2G12B (ENSRBIG00000030857) #36	P4HA1 (ENSRBIG00000035304) #37	NUDT13 (ENSRBIG00000008612)
Platyrrhini	ANCESTRAL SPECIES	14	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342.l #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163216	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f.k #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590.h #31	ENSGT00950000183079.B #32	ENSGT00950000183070.a.b.g.b.b.a.b.a	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00390000015361
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	914	ENSANAG00000035837	ENSANAG00000022049	ENSANAG00000024340 #12	NODAL (ENSANAG00000023960) #13	PALD1 (ENSANAG00000034270) #14	PRF1 (ENSANAG00000026005) #15	ADAMTS14 (ENSANAG00000035447) #16	TBATA (ENSANAG00000029809) #17	SGPL1 (ENSANAG00000025187) #18	PCBD1 (ENSANAG00000036039) #19	UNC5B (ENSANAG00000024842) #20	SLC29A3 (ENSANAG00000028508) #21	ENSANAG00000025046	ENSANAG00000027248 #22	VSIR (ENSANAG00000028142) #23	ENSANAG00000033011 #22	PSAP (ENSANAG00000025217) #24	CHST3 (ENSANAG00000021274) #25	SPOCK2 (ENSANAG00000036693) #27	ENSANAG00000028229	ENSANAG00000001612	ASCC1 (ENSANAG00000027828) #28	ANAPC16 (ENSANAG00000020558) #29	DDIT4 (ENSANAG00000036767) #30	DNAJB12 (ENSANAG00000013275) #31	MICU1 (ENSANAG00000023282) #32	ENSANAG00000026504	MCU (ENSANAG00000034094) #34	OIT3 (ENSANAG00000025302) #35	ENSANAG00000022491	PLA2G12B (ENSANAG00000030203) #36
Mas night monkey	MODERN SPECIES	914	ENSANAG00000021565	LRRC20 (ENSANAG00000027549) #11	ENSANAG00000035837	ENSANAG00000022049	ENSANAG00000024340 #12	NODAL (ENSANAG00000023960) #13	PALD1 (ENSANAG00000034270) #14	PRF1 (ENSANAG00000026005) #15	ADAMTS14 (ENSANAG00000035447) #16	TBATA (ENSANAG00000029809) #17	SGPL1 (ENSANAG00000025187) #18	PCBD1 (ENSANAG00000036039) #19	UNC5B (ENSANAG00000024842) #20	SLC29A3 (ENSANAG00000028508) #21	ENSANAG00000025046	ENSANAG00000027248 #22	VSIR (ENSANAG00000028142) #23	ENSANAG00000033011 #22	PSAP (ENSANAG00000025217) #24	CHST3 (ENSANAG00000021274) #25	SPOCK2 (ENSANAG00000036693) #27	ENSANAG00000028229	ENSANAG00000001612	ASCC1 (ENSANAG00000027828) #28	ANAPC16 (ENSANAG00000020558) #29	DDIT4 (ENSANAG00000036767) #30	DNAJB12 (ENSANAG00000013275) #31	MICU1 (ENSANAG00000023282) #32	ENSANAG00000026504	MCU (ENSANAG00000034094) #34	OIT3 (ENSANAG00000025302) #35
Cebidae	ANCESTRAL SPECIES	17	ENSGT00390000017004.a.b.k #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342.l #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163216	ENSGT00940000155245 #22	ENSGT00940000156695.f.k #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590.g.a #31	ENSGT00950000183079.B #32	ENSGT00950000183070.a.b.g.b.b.a.b.a	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00390000015361
Cebidae_a	ANCESTRAL SPECIES	62	ENSGT00390000017004.a.b.k #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342.l #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000163216	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f.k #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590.h #31	ENSGT00940000155590.g.a #31	ENSGT00950000183079.B #32	ENSGT00950000183070.a.b.g.b.b.a.b.a	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36
Capuchin	MODERN SPECIES	215	NPFFR1 (ENSCCAG00000022929) #10	LRRC20 (ENSCCAG00000023860) #11	ENSCCAG00000008526	EIF4EBP2 (ENSCCAG00000037637) #12	NODAL (ENSCCAG00000032672) #13	PALD1 (ENSCCAG00000030277) #14	PRF1 (ENSCCAG00000035533) #15	ADAMTS14 (ENSCCAG00000034347) #16	TBATA (ENSCCAG00000022065) #17	ENSCCAG00000034244	SGPL1 (ENSCCAG00000022681) #18	PCBD1 (ENSCCAG00000026880) #19	UNC5B (ENSCCAG00000037321) #20	SLC29A3 (ENSCCAG00000025265) #21	ENSCCAG00000037741	CDH23 (ENSCCAG00000024907) #22	PSAP (ENSCCAG00000031808) #24	CHST3 (ENSCCAG00000024311) #25	SPOCK2 (ENSCCAG00000000519) #27	ASCC1 (ENSCCAG00000029607) #28	ENSCCAG00000035227 #29	DDIT4 (ENSCCAG00000029729) #30	DNAJB12 (ENSCCAG00000021542) #31
Bolivian squirrel monkey	MODERN SPECIES	72	NPFFR1 (ENSSBOG00000027357) #10	LRRC20 (ENSSBOG00000004099) #11	ENSSBOG00000032439	EIF4EBP2 (ENSSBOG00000021003) #12	NODAL (ENSSBOG00000035806) #13	PALD1 (ENSSBOG00000022369) #14	PRF1 (ENSSBOG00000023777) #15	ADAMTS14 (ENSSBOG00000029582) #16	TBATA (ENSSBOG00000022979) #17	SGPL1 (ENSSBOG00000031311) #18	PCBD1 (ENSSBOG00000033530) #19	UNC5B (ENSSBOG00000026794) #20	SLC29A3 (ENSSBOG00000004257) #21	ENSSBOG00000031393	VSIR (ENSSBOG00000001069) #23	CDH23 (ENSSBOG00000033058) #22	PSAP (ENSSBOG00000029786) #24	ENSSBOG00000010586	SPOCK2 (ENSSBOG00000032449) #27	ENSSBOG00000036237	ASCC1 (ENSSBOG00000022342) #28	ANAPC16 (ENSSBOG00000025196) #29	DDIT4 (ENSSBOG00000035270) #30	DNAJB12 (ENSSBOG00000031191) #31	MICU1 (ENSSBOG00000023763) #32	ENSSBOG00000032143	MCU (ENSSBOG00000021758) #34	OIT3 (ENSSBOG00000028548) #35	ENSSBOG00000012044	PLA2G12B (ENSSBOG00000032656) #36	GNG7 (ENSSBOG00000014211)
Marmoset	MODERN SPECIES	3	ENSCJAG00000042744 #8	NPFFR1 (ENSCJAG00000016344) #10	LRRC20 (ENSCJAG00000016341) #11	ENSCJAG00000082174 #12	NODAL (ENSCJAG00000016288) #13	PALD1 (ENSCJAG00000016917) #14	PRF1 (ENSCJAG00000014858) #15	ADAMTS14 (ENSCJAG00000086368) #16	TBATA (ENSCJAG00000014795) #17	PCBD1 (ENSCJAG00000039995) #19	SGPL1 (ENSCJAG00000014777) #18	UNC5B (ENSCJAG00000007027) #20	SLC29A3 (ENSCJAG00000044812) #21	C10orf105 (ENSCJAG00000057054)	ENSCJAG00000007203	CDH23 (ENSCJAG00000034339) #22	PSAP (ENSCJAG00000012992) #24	ENSCJAG00000007248	SPOCK2 (ENSCJAG00000007252) #27	ENSCJAG00000075810	ANAPC16 (ENSCJAG00000086671) #29	ASCC1 (ENSCJAG00000007273) #28	DDIT4 (ENSCJAG00000069599) #30	ENSCJAG00000007303 #31	ENSCJAG00000074108	MICU1 (ENSCJAG00000007320) #32	MCU (ENSCJAG00000007351) #34	OIT3 (ENSCJAG00000007405) #35	PLA2G12B (ENSCJAG00000007420) #36	ENSCJAG00000023337	P4HA1 (ENSCJAG00000007429) #37
Tarsier	MODERN SPECIES	3681												CUNH19orf38 (ENSTSYG00000030689)	UNC5B (ENSTSYG00000013855) #20	SLC29A3 (ENSTSYG00000033524) #21	VSIR (ENSTSYG00000007822) #23	CDH23 (ENSTSYG00000025610) #22	PSAP (ENSTSYG00000008020) #24
Euarchontoglires_A	ANCESTRAL SPECIES	15	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147834	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879
Tree shrew	MODERN SPECIES	218																CDH23 (ENSTBEG00000010123) #22	VSIR (ENSTBEG00000010319) #23	PSAP (ENSTBEG00000010333) #24
Glires	ANCESTRAL SPECIES	16	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147834	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879
Lagomorpha	ANCESTRAL SPECIES	18	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147834	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00390000015361
Rabbit	MODERN SPECIES	9	SAR1A (ENSOCUG00000004547) #8	PPA1 (ENSOCUG00000016001) #9	NPFFR1 (ENSOCUG00000016014) #10	LRRC20 (ENSOCUG00000016021) #11	EIF4EBP2 (ENSOCUG00000003475) #12	NODAL (ENSOCUG00000008685) #13	PALD1 (ENSOCUG00000024110) #14	PRF1 (ENSOCUG00000006954) #15	TBATA (ENSOCUG00000017786) #17	ADAMTS14 (ENSOCUG00000017775) #16	PCBD1 (ENSOCUG00000026149) #19	UNC5B (ENSOCUG00000006943) #20	SLC29A3 (ENSOCUG00000006953) #21	C10orf105 (ENSOCUG00000030004)	VSIR (ENSOCUG00000016252) #23	CDH23 (ENSOCUG00000016171) #22	PSAP (ENSOCUG00000016261) #24	CHST3 (ENSOCUG00000023270) #25	ENSOCUG00000039606	SPOCK2 (ENSOCUG00000016744) #27	ASCC1 (ENSOCUG00000016753) #28	ANAPC16 (ENSOCUG00000016767) #29	DDIT4 (ENSOCUG00000016772) #30	DNAJB12 (ENSOCUG00000017401) #31	MICU1 (ENSOCUG00000008594) #32	MCU (ENSOCUG00000014855) #34	OIT3 (ENSOCUG00000016034) #35	PLA2G12B (ENSOCUG00000016043) #36	P4HA1 (ENSOCUG00000009739) #37	NUDT13 (ENSOCUG00000014329)	ECD (ENSOCUG00000017621)
Pika	MODERN SPECIES	97														UNC5B (ENSOPRG00000006165) #20	SLC29A3 (ENSOPRG00000006184) #21	CDH23 (ENSOPRG00000006194) #22	ENSOPRG00000018264	VSIR (ENSOPRG00000006278) #23	PSAP (ENSOPRG00000006295) #24
Rodentia	ANCESTRAL SPECIES	16	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147834	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879
Rodentia_B	ANCESTRAL SPECIES	10	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147834	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	405														Unc5b (ENSDORG00000002369) #20	Slc29a3 (ENSDORG00000015572) #21	ENSDORG00000014471 #22	ENSDORG00000014479	ENSDORG00000023501 #22	ENSDORG00000014480 #24	Chst3 (ENSDORG00000000016) #25	Spock2 (ENSDORG00000007255) #27	Ascc1 (ENSDORG00000007065) #28	ENSDORG00000027202 #29	Ddit4 (ENSDORG00000024386) #30	Dnajb12 (ENSDORG00000011287) #31	Micu1 (ENSDORG00000011291) #32	ENSDORG00000003477	Mcu (ENSDORG00000002160) #34	ENSDORG00000026167	Oit3 (ENSDORG00000002161) #35	Pla2g12b (ENSDORG00000002162) #36
Kangaroo rat	MODERN SPECIES	405												Unc5b (ENSDORG00000002369) #20	Slc29a3 (ENSDORG00000015572) #21	ENSDORG00000014471 #22	ENSDORG00000014479	ENSDORG00000023501 #22	ENSDORG00000014480 #24	Chst3 (ENSDORG00000000016) #25	Spock2 (ENSDORG00000007255) #27	Ascc1 (ENSDORG00000007065) #28	ENSDORG00000027202 #29	Ddit4 (ENSDORG00000024386) #30	Dnajb12 (ENSDORG00000011287) #31	Micu1 (ENSDORG00000011291) #32	ENSDORG00000003477	Mcu (ENSDORG00000002160) #34	ENSDORG00000026167	Oit3 (ENSDORG00000002161) #35	Pla2g12b (ENSDORG00000002162) #36	P4ha1 (ENSDORG00000003405) #37	ENSDORG00000007677
Myomorpha	ANCESTRAL SPECIES	15	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147834	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00390000015361
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	64	Ppa1 (ENSJJAG00000021599) #9	Npffr1 (ENSJJAG00000024420) #10	Lrrc20 (ENSJJAG00000021553) #11	Eif4ebp2 (ENSJJAG00000017843) #12	Nodal (ENSJJAG00000019905) #13	Pald1 (ENSJJAG00000015978) #14	Prf1 (ENSJJAG00000005807) #15	Adamts14 (ENSJJAG00000021896) #16	Tbata (ENSJJAG00000023471) #17	Sgpl1 (ENSJJAG00000006888) #18	Pcbd1 (ENSJJAG00000023298) #19	Unc5b (ENSJJAG00000017897) #20	Slc29a3 (ENSJJAG00000011985) #21	ENSJJAG00000010722 #22	Vsir (ENSJJAG00000006974) #23	ENSJJAG00000022902 #22	Psap (ENSJJAG00000013531) #24	Chst3 (ENSJJAG00000004645) #25	Spock2 (ENSJJAG00000010222) #27	Ascc1 (ENSJJAG00000009829) #28	ENSJJAG00000015840 #29	Ddit4 (ENSJJAG00000020327) #30	Dnajb12 (ENSJJAG00000012076) #31	Micu1 (ENSJJAG00000010331) #32	ENSJJAG00000017207 #34	Oit3 (ENSJJAG00000024362) #35	Pla2g12b (ENSJJAG00000024323) #36	P4ha1 (ENSJJAG00000004232) #37	Nudt13 (ENSJJAG00000020463)	Ecd (ENSJJAG00000021176)	Fam149b (ENSJJAG00000018426)
Lesser Egyptian jerboa	MODERN SPECIES	64	ENSJJAG00000011394 #7	ENSJJAG00000016603 #8	Ppa1 (ENSJJAG00000021599) #9	Npffr1 (ENSJJAG00000024420) #10	Lrrc20 (ENSJJAG00000021553) #11	Eif4ebp2 (ENSJJAG00000017843) #12	Nodal (ENSJJAG00000019905) #13	Pald1 (ENSJJAG00000015978) #14	Prf1 (ENSJJAG00000005807) #15	Adamts14 (ENSJJAG00000021896) #16	Tbata (ENSJJAG00000023471) #17	Sgpl1 (ENSJJAG00000006888) #18	Pcbd1 (ENSJJAG00000023298) #19	Unc5b (ENSJJAG00000017897) #20	Slc29a3 (ENSJJAG00000011985) #21	ENSJJAG00000010722 #22	Vsir (ENSJJAG00000006974) #23	ENSJJAG00000022902 #22	Psap (ENSJJAG00000013531) #24	Chst3 (ENSJJAG00000004645) #25	Spock2 (ENSJJAG00000010222) #27	Ascc1 (ENSJJAG00000009829) #28	ENSJJAG00000015840 #29	Ddit4 (ENSJJAG00000020327) #30	Dnajb12 (ENSJJAG00000012076) #31	Micu1 (ENSJJAG00000010331) #32	ENSJJAG00000017207 #34	Oit3 (ENSJJAG00000024362) #35	Pla2g12b (ENSJJAG00000024323) #36	P4ha1 (ENSJJAG00000004232) #37	Nudt13 (ENSJJAG00000020463)
Muroidea	ANCESTRAL SPECIES	43	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147834	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00570000080619	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879
Muroidea_A	ANCESTRAL SPECIES	8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163216	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147834	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00570000080619	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00950000183003.a.a.b
Cricetidae	ANCESTRAL SPECIES	9	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163216	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37
Cricetidae_B	ANCESTRAL SPECIES	12	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00570000080619	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37
Northern American deer mouse	MODERN SPECIES	13	Sar1a (ENSPEMG00000025677) #8	Ppa1 (ENSPEMG00000014364) #9	Npffr1 (ENSPEMG00000000515) #10	Lrrc20 (ENSPEMG00000027048) #11	ENSPEMG00000029846	Eif4ebp2 (ENSPEMG00000020578) #12	Nodal (ENSPEMG00000020412) #13	Pald1 (ENSPEMG00000013431) #14	Prf1 (ENSPEMG00000016679) #15	Adamts14 (ENSPEMG00000010369) #16	ENSPEMG00000015979 #17	Sgpl1 (ENSPEMG00000012173) #18	Pcbd1 (ENSPEMG00000027007) #19	Unc5b (ENSPEMG00000000250) #20	Slc29a3 (ENSPEMG00000013214) #21	Cdh23 (ENSPEMG00000001083) #22	Gm17455 (ENSPEMG00000008830)	Vsir (ENSPEMG00000010452) #23	Psap (ENSPEMG00000009902) #24	Chst3 (ENSPEMG00000017475) #25	Spock2 (ENSPEMG00000008616) #27	Ascc1 (ENSPEMG00000002244) #28	Anapc16 (ENSPEMG00000011038) #29	Ddit4 (ENSPEMG00000025339) #30	Dnajb12 (ENSPEMG00000005161) #31	Micu1 (ENSPEMG00000014057) #32	ENSPEMG00000025760	Mcu (ENSPEMG00000024070) #34	Oit3 (ENSPEMG00000011782) #35	Pla2g12b (ENSPEMG00000026795) #36	P4ha1 (ENSPEMG00000006561) #37
Prairie vole	MODERN SPECIES	352	Ppa1 (ENSMOCG00000016579) #9	Npffr1 (ENSMOCG00000000219) #10	Lrrc20 (ENSMOCG00000015935) #11	Eif4ebp2 (ENSMOCG00000013203) #12	Nodal (ENSMOCG00000002962) #13	Pald1 (ENSMOCG00000013177) #14	Prf1 (ENSMOCG00000001516) #15	Adamts14 (ENSMOCG00000001616) #16	Tbata (ENSMOCG00000012212) #17	Sgpl1 (ENSMOCG00000021262) #18	Pcbd1 (ENSMOCG00000013382) #19	Unc5b (ENSMOCG00000002975) #20	Slc29a3 (ENSMOCG00000008126) #21	Gm17455 (ENSMOCG00000014295)	ENSMOCG00000009232	Cdh23 (ENSMOCG00000019639) #22	Psap (ENSMOCG00000018724) #24	Chst3 (ENSMOCG00000003237) #25	Spock2 (ENSMOCG00000012358) #27	Ascc1 (ENSMOCG00000007733) #28	Anapc16 (ENSMOCG00000022477) #29	Ddit4 (ENSMOCG00000001946) #30	Dnajb12 (ENSMOCG00000016174) #31	Micu1 (ENSMOCG00000020763) #32	ENSMOCG00000022679	ENSMOCG00000022073	Mcu (ENSMOCG00000014534) #34	Oit3 (ENSMOCG00000013609) #35	Pla2g12b (ENSMOCG00000011480) #36	P4ha1 (ENSMOCG00000017531) #37	Gm45261 (ENSMOCG00000009083)
Cricetinae	ANCESTRAL SPECIES	24	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163216	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00950000183003.a.a.b
Chinese hamster chok1gshd	MODERN SPECIES	204	Sar1a (ENSCGRG00001016695) #8	Ppa1 (ENSCGRG00001021182) #9	Npffr1 (ENSCGRG00001024879) #10	Lrrc20 (ENSCGRG00001016697) #11	Eif4ebp2 (ENSCGRG00001010892) #12	Nodal (ENSCGRG00001000105) #13	ENSCGRG00001010371	Pald1 (ENSCGRG00001024676) #14	Prf1 (ENSCGRG00001016938) #15	Adamts14 (ENSCGRG00001018335) #16	Tbata (ENSCGRG00001015076) #17	Sgpl1 (ENSCGRG00001016963) #18	Pcbd1 (ENSCGRG00001000360) #19	Unc5b (ENSCGRG00001011420) #20	Slc29a3 (ENSCGRG00001023912) #21	Cdh23 (ENSCGRG00001019491) #22	Gm17455 (ENSCGRG00001005354)	ENSCGRG00001009572	Psap (ENSCGRG00001012506) #24	Chst3 (ENSCGRG00001008453) #25	Spock2 (ENSCGRG00001018408) #27	Ascc1 (ENSCGRG00001016548) #28	Anapc16 (ENSCGRG00001022181) #29	Ddit4 (ENSCGRG00001003691) #30	Dnajb12 (ENSCGRG00001012529) #31	Micu1 (ENSCGRG00001012599) #32	ENSCGRG00001012841	Mcu (ENSCGRG00001016272) #34	ENSCGRG00001010110	Oit3 (ENSCGRG00001021921) #35	Pla2g12b (ENSCGRG00001000238) #36
Golden Hamster	MODERN SPECIES	641	Tysnd1 (ENSMAUG00000010004) #7	Sar1a (ENSMAUG00000005624) #8	Ppa1 (ENSMAUG00000008277) #9	Npffr1 (ENSMAUG00000006691) #10	Lrrc20 (ENSMAUG00000011702) #11	Eif4ebp2 (ENSMAUG00000012220) #12	Nodal (ENSMAUG00000012281) #13	Pald1 (ENSMAUG00000010402) #14	Prf1 (ENSMAUG00000003466) #15	Adamts14 (ENSMAUG00000010108) #16	Tbata (ENSMAUG00000013552) #17	Sgpl1 (ENSMAUG00000008580) #18	Pcbd1 (ENSMAUG00000009097) #19	Unc5b (ENSMAUG00000011675) #20	Slc29a3 (ENSMAUG00000011308) #21	Cdh23 (ENSMAUG00000016882) #22	Gm17455 (ENSMAUG00000015274)	ENSMAUG00000015706	Psap (ENSMAUG00000017372) #24	Chst3 (ENSMAUG00000009425) #25	Spock2 (ENSMAUG00000010578) #27	ENSMAUG00000009049 #28	Anapc16 (ENSMAUG00000009889) #29	Ddit4 (ENSMAUG00000010020) #30	Dnajb12 (ENSMAUG00000010217) #31	ENSMAUG00000012133 #32	Mcu (ENSMAUG00000021298) #34	Oit3 (ENSMAUG00000008980) #35	Pla2g12b (ENSMAUG00000009563) #36	P4ha1 (ENSMAUG00000011056) #37	Sowahc (ENSMAUG00000015082)
Murinae	ANCESTRAL SPECIES	18	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147834	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00570000080619	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00950000183003.a.a.b
Mus	ANCESTRAL SPECIES	15	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00900000143318	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147834	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00570000080619	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00950000183003.a.a.b
Mus_A	ANCESTRAL SPECIES	11	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00900000143318	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147834	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00570000080619	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00950000183003.a.a.b
Mus_B	ANCESTRAL SPECIES	10	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00900000143318	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147834	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00570000080619	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00950000183003.a.a.b
Mus_C	ANCESTRAL SPECIES	7	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00900000143318	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147834	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00570000080619	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00950000183003.a.a.b
Steppe mouse	MODERN SPECIES	3114	ENSMSIG00000013570	Eif4ebp2 (ENSMSIG00000013532) #12	Nodal (ENSMSIG00000013518) #13	ENSMSIG00000013503	Pald1 (ENSMSIG00000013427) #14	Prf1 (ENSMSIG00000013413) #15	Adamts14 (ENSMSIG00000013345) #16	Tbata (ENSMSIG00000013277) #17	Sgpl1 (ENSMSIG00000013240) #18	Pcbd1 (ENSMSIG00000013225) #19	ENSMSIG00000013208	Unc5b (ENSMSIG00000013086) #20	Slc29a3 (ENSMSIG00000013039) #21	Gm17455 (ENSMSIG00000013035)	Vsir (ENSMSIG00000013001) #23	Cdh23 (ENSMSIG00000011065) #22	Psap (ENSMSIG00000010366) #24	Chst3 (ENSMSIG00000010346) #25	ENSMSIG00000010337	Spock2 (ENSMSIG00000010244) #27	ENSMSIG00000010239	Ascc1 (ENSMSIG00000010173) #28	Anapc16 (ENSMSIG00000010144) #29	Ddit4 (ENSMSIG00000010134) #30	Dnajb12 (ENSMSIG00000010042) #31	Micu1 (ENSMSIG00000009889) #32
spretus	MODERN SPECIES	1	Npffr1 (MGP_SPRETEiJ_G0016181) #10	Lrrc20 (MGP_SPRETEiJ_G0016180) #11	MGP_SPRETEiJ_G0016179	Eif4ebp2 (MGP_SPRETEiJ_G0016178) #12	MGP_SPRETEiJ_G0016177 #15	Nodal (MGP_SPRETEiJ_G0016176) #13	Pald1 (MGP_SPRETEiJ_G0016175) #14	Adamts14 (MGP_SPRETEiJ_G0016174) #16	Tbata (MGP_SPRETEiJ_G0016173) #17	Sgpl1 (MGP_SPRETEiJ_G0016172) #18	Pcbd1 (MGP_SPRETEiJ_G0016171) #19	Unc5b (MGP_SPRETEiJ_G0016170) #20	MGP_SPRETEiJ_G0016169	Gm17455 (MGP_SPRETEiJ_G0016168)	Vsir (MGP_SPRETEiJ_G0016167) #23	Cdh23 (MGP_SPRETEiJ_G0016166) #22	Psap (MGP_SPRETEiJ_G0016165) #24	Chst3 (MGP_SPRETEiJ_G0016164) #25	Spock2 (MGP_SPRETEiJ_G0016163) #27	Ascc1 (MGP_SPRETEiJ_G0016162) #28	Anapc16 (MGP_SPRETEiJ_G0016161) #29	Ddit4 (MGP_SPRETEiJ_G0016160) #30	Dnajb12 (MGP_SPRETEiJ_G0016159) #31	Micu1 (MGP_SPRETEiJ_G0016158) #32	MGP_SPRETEiJ_G0016157	Mcu (MGP_SPRETEiJ_G0016156) #34	Oit3 (MGP_SPRETEiJ_G0016155) #35	Pla2g12b (MGP_SPRETEiJ_G0016154) #36	P4ha1 (MGP_SPRETEiJ_G0016153) #37	Sowahc (MGP_SPRETEiJ_G0016152)	Septin10 (MGP_SPRETEiJ_G0016151)
Mouse	MODERN SPECIES	1	Ppa1 (ENSMUSG00000020089) #9	Npffr1 (ENSMUSG00000020090) #10	Lrrc20 (ENSMUSG00000037151) #11	Eif4ebp2 (ENSMUSG00000020091) #12	Nodal (ENSMUSG00000037171) #13	Pald1 (ENSMUSG00000020092) #14	Prf1 (ENSMUSG00000037202) #15	Adamts14 (ENSMUSG00000059901) #16	Tbata (ENSMUSG00000020096) #17	Sgpl1 (ENSMUSG00000020097) #18	Pcbd1 (ENSMUSG00000020098) #19	Unc5b (ENSMUSG00000020099) #20	Slc29a3 (ENSMUSG00000020100) #21	Gm17455 (ENSMUSG00000090439)	Vsir (ENSMUSG00000020101) #23	Cdh23 (ENSMUSG00000012819) #22	Psap (ENSMUSG00000004207) #24	Chst3 (ENSMUSG00000057337) #25	Spock2 (ENSMUSG00000058297) #27	Ascc1 (ENSMUSG00000044475) #28	Anapc16 (ENSMUSG00000020107) #29	Ddit4 (ENSMUSG00000020108) #30	Dnajb12 (ENSMUSG00000020109) #31	Micu1 (ENSMUSG00000020111) #32	Mcu (ENSMUSG00000009647) #34	Oit3 (ENSMUSG00000009654) #35	Pla2g12b (ENSMUSG00000009646) #36	P4ha1 (ENSMUSG00000019916) #37	Sowahc (ENSMUSG00000098188)	Septin10 (ENSMUSG00000019917)	Sh3rf3 (ENSMUSG00000037990)
Ryukyu mouse	MODERN SPECIES	1	Npffr1 (MGP_CAROLIEiJ_G0015370) #10	Lrrc20 (MGP_CAROLIEiJ_G0015369) #11	MGP_CAROLIEiJ_G0015368	Eif4ebp2 (MGP_CAROLIEiJ_G0015367) #12	Nodal (MGP_CAROLIEiJ_G0015366) #13	Pald1 (MGP_CAROLIEiJ_G0015365) #14	Prf1 (MGP_CAROLIEiJ_G0015364) #15	Adamts14 (MGP_CAROLIEiJ_G0015363) #16	Tbata (MGP_CAROLIEiJ_G0015362) #17	MGP_CAROLIEiJ_G0015361 #18	Pcbd1 (MGP_CAROLIEiJ_G0015360) #19	Unc5b (MGP_CAROLIEiJ_G0015359) #20	MGP_CAROLIEiJ_G0015358 #21	Gm17455 (MGP_CAROLIEiJ_G0015357)	MGP_CAROLIEiJ_G0015356	Cdh23 (MGP_CAROLIEiJ_G0015355) #22	Psap (MGP_CAROLIEiJ_G0015354) #24	Chst3 (MGP_CAROLIEiJ_G0015353) #25	Spock2 (MGP_CAROLIEiJ_G0015352) #27	Ascc1 (MGP_CAROLIEiJ_G0015351) #28	Anapc16 (MGP_CAROLIEiJ_G0015350) #29	Ddit4 (MGP_CAROLIEiJ_G0015349) #30	Dnajb12 (MGP_CAROLIEiJ_G0015348) #31	Micu1 (MGP_CAROLIEiJ_G0015347) #32	MGP_CAROLIEiJ_G0015346	Mcu (MGP_CAROLIEiJ_G0015345) #34	Oit3 (MGP_CAROLIEiJ_G0015344) #35	Pla2g12b (MGP_CAROLIEiJ_G0015343) #36	P4ha1 (MGP_CAROLIEiJ_G0015342) #37	Sowahc (MGP_CAROLIEiJ_G0015341)	Septin10 (MGP_CAROLIEiJ_G0015340)
Shrew mouse	MODERN SPECIES	22	Npffr1 (MGP_PahariEiJ_G0030786) #10	Lrrc20 (MGP_PahariEiJ_G0030785) #11	MGP_PahariEiJ_G0030784	Eif4ebp2 (MGP_PahariEiJ_G0030783) #12	Nodal (MGP_PahariEiJ_G0030782) #13	Pald1 (MGP_PahariEiJ_G0030781) #14	Prf1 (MGP_PahariEiJ_G0030780) #15	Adamts14 (MGP_PahariEiJ_G0030779) #16	Tbata (MGP_PahariEiJ_G0030778) #17	Sgpl1 (MGP_PahariEiJ_G0030777) #18	Pcbd1 (MGP_PahariEiJ_G0030776) #19	Unc5b (MGP_PahariEiJ_G0030775) #20	Slc29a3 (MGP_PahariEiJ_G0030774) #21	Gm17455 (MGP_PahariEiJ_G0030773)	MGP_PahariEiJ_G0030772	Cdh23 (MGP_PahariEiJ_G0030771) #22	Psap (MGP_PahariEiJ_G0030770) #24	Chst3 (MGP_PahariEiJ_G0030769) #25	Spock2 (MGP_PahariEiJ_G0030768) #27	Ascc1 (MGP_PahariEiJ_G0030767) #28	Anapc16 (MGP_PahariEiJ_G0030766) #29	Ddit4 (MGP_PahariEiJ_G0030765) #30	Dnajb12 (MGP_PahariEiJ_G0030764) #31	Micu1 (MGP_PahariEiJ_G0030763) #32	MGP_PahariEiJ_G0030762	Mcu (MGP_PahariEiJ_G0030761) #34	Oit3 (MGP_PahariEiJ_G0030760) #35	Pla2g12b (MGP_PahariEiJ_G0030759) #36	P4ha1 (MGP_PahariEiJ_G0030758) #37	Sowahc (MGP_PahariEiJ_G0030757)	Septin10 (MGP_PahariEiJ_G0030756)
Rat	MODERN SPECIES	12	Lrrc20 (ENSRNOG00000000560) #11	ENSRNOG00000066789	Eif4ebp2 (ENSRNOG00000055391) #12	Nodal (ENSRNOG00000000556) #13	Pald1 (ENSRNOG00000000561) #14	Prf1 (ENSRNOG00000000562) #15	Adamts14 (ENSRNOG00000000563) #16	Tbata (ENSRNOG00000000564) #17	Sgpl1 (ENSRNOG00000000565) #18	Pcbd1 (ENSRNOG00000067614) #19	Pcbd1 (ENSRNOG00000000566) #19	Unc5b (ENSRNOG00000000567) #20	Slc29a3 (ENSRNOG00000000568) #21	LOC100361018 (ENSRNOG00000046494)	Vsir (ENSRNOG00000000569)	Cdh23 (ENSRNOG00000033087) #22	Psap (ENSRNOG00000000571) #24	Chst3 (ENSRNOG00000000572) #25	Spock2 (ENSRNOG00000061544) #27	AC096404.1 (ENSRNOG00000000574)	Ascc1 (ENSRNOG00000056647) #28	Anapc16 (ENSRNOG00000000576) #29	Ddit4 (ENSRNOG00000057078) #30	Dnajb12 (ENSRNOG00000030408) #31	Micu1 (ENSRNOG00000043436) #32	Fabp5-ps3 (ENSRNOG00000048535)	Mcu (ENSRNOG00000045920) #34	Oit3 (ENSRNOG00000046365) #35	Pla2g12b (ENSRNOG00000046619) #36	P4ha1 (ENSRNOG00000050655) #37	Snrpd2l (ENSRNOG00000048758)
Upper Galilee mountains blind mole rat	MODERN SPECIES	958							Prf1 (ENSNGAG00000023694) #15	Adamts14 (ENSNGAG00000013462) #16	Tbata (ENSNGAG00000004249) #17	Sgpl1 (ENSNGAG00000022822) #18	Pcbd1 (ENSNGAG00000022293) #19	Unc5b (ENSNGAG00000022063) #20	Slc29a3 (ENSNGAG00000016308) #21	Gm17455 (ENSNGAG00000012878)	Vsir (ENSNGAG00000021691) #23	Cdh23 (ENSNGAG00000021359) #22	Psap (ENSNGAG00000012932) #24	Chst3 (ENSNGAG00000017418) #25	Spock2 (ENSNGAG00000001291) #27	Ascc1 (ENSNGAG00000022999) #28	Anapc16 (ENSNGAG00000014647) #29	Ddit4 (ENSNGAG00000011547) #30	Dnajb12 (ENSNGAG00000013663) #31	ENSNGAG00000018042	Micu1 (ENSNGAG00000014881) #32	ENSNGAG00000009460	Mcu (ENSNGAG00000015047) #34	Oit3 (ENSNGAG00000021101) #35	Pla2g12b (ENSNGAG00000011913) #36	P4ha1 (ENSNGAG00000014487) #37	Nudt13 (ENSNGAG00000011208)
Rodentia_A	ANCESTRAL SPECIES	15	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00390000015361	ENSGT00530000063727.A
Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879
Hystricomorpha_a	ANCESTRAL SPECIES	3	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163216	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879
Guinea pig	MODERN SPECIES	15	TYSND1 (ENSCPOG00000006334) #7	SAR1A (ENSCPOG00000032583) #8	PPA1 (ENSCPOG00000014023) #9	NPFFR1 (ENSCPOG00000019374) #10	LRRC20 (ENSCPOG00000034939) #11	EIF4EBP2 (ENSCPOG00000039594) #12	NODAL (ENSCPOG00000025772) #13	PALD1 (ENSCPOG00000027030) #14	PRF1 (ENSCPOG00000033631) #15	ADAMTS14 (ENSCPOG00000012687) #16	TBATA (ENSCPOG00000012696) #17	SGPL1 (ENSCPOG00000012699) #18	PCBD1 (ENSCPOG00000036733) #19	UNC5B (ENSCPOG00000004794) #20	SLC29A3 (ENSCPOG00000004798) #21	CDH23 (ENSCPOG00000003086) #22	C10orf105 (ENSCPOG00000036163)	ENSCPOG00000003100	PSAP (ENSCPOG00000001764) #24	CHST3 (ENSCPOG00000000477) #25	SPOCK2 (ENSCPOG00000008188) #27	ASCC1 (ENSCPOG00000001670) #28	ANAPC16 (ENSCPOG00000031510) #29	DDIT4 (ENSCPOG00000032426) #30	DNAJB12 (ENSCPOG00000001677) #31	MICU1 (ENSCPOG00000001679) #32	ENSCPOG00000022769	MCU (ENSCPOG00000015605) #34	OIT3 (ENSCPOG00000015607) #35	PLA2G12B (ENSCPOG00000015609) #36	P4HA1 (ENSCPOG00000015701) #37
Hystricomorpha_b	ANCESTRAL SPECIES	3	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00390000015361	ENSGT00530000063727.A
Degu	DUPLICATION
Degu	MODERN SPECIES	46	NPFFR1 (ENSODEG00000013333) #10	LRRC20 (ENSODEG00000014868) #11	ENSODEG00000014893	EIF4EBP2 (ENSODEG00000014467) #12	NODAL (ENSODEG00000013687) #13	PALD1 (ENSODEG00000013788) #14	ENSODEG00000013357	ENSODEG00000014438	PRF1 (ENSODEG00000015116) #15	ADAMTS14 (ENSODEG00000013691) #16	TBATA (ENSODEG00000014113) #17	SGPL1 (ENSODEG00000015118) #18	PCBD1 (ENSODEG00000014762) #19	UNC5B (ENSODEG00000014463) #20	SLC29A3 (ENSODEG00000014519) #21	ENSODEG00000013946 #22	C10orf105 (ENSODEG00000014972)	VSIR (ENSODEG00000013604) #23	ENSODEG00000013740 #22	ENSODEG00000015134 #24	CHST3 (ENSODEG00000014161) #25	SPOCK2 (ENSODEG00000014874) #27	ASCC1 (ENSODEG00000013709) #28	ENSODEG00000014243 #29	DDIT4 (ENSODEG00000013908) #30	DNAJB12 (ENSODEG00000013794) #31	MICU1 (ENSODEG00000015508) #32	MCU (ENSODEG00000013701) #34	OIT3 (ENSODEG00000014044) #35	PLA2G12B (ENSODEG00000014744) #36	P4HA1 (ENSODEG00000015164) #37
Degu	MODERN SPECIES	46	EIF4EBP2 (ENSODEG00000014467) #12	NODAL (ENSODEG00000013687) #13	PALD1 (ENSODEG00000013788) #14	ENSODEG00000013357	ENSODEG00000014438	PRF1 (ENSODEG00000015116) #15	ADAMTS14 (ENSODEG00000013691) #16	TBATA (ENSODEG00000014113) #17	SGPL1 (ENSODEG00000015118) #18	PCBD1 (ENSODEG00000014762) #19	UNC5B (ENSODEG00000014463) #20	SLC29A3 (ENSODEG00000014519) #21	ENSODEG00000013946 #22	C10orf105 (ENSODEG00000014972)	VSIR (ENSODEG00000013604) #23	ENSODEG00000013740 #22	ENSODEG00000015134 #24	CHST3 (ENSODEG00000014161) #25	SPOCK2 (ENSODEG00000014874) #27	ASCC1 (ENSODEG00000013709) #28	ENSODEG00000014243 #29	DDIT4 (ENSODEG00000013908) #30	DNAJB12 (ENSODEG00000013794) #31	MICU1 (ENSODEG00000015508) #32	MCU (ENSODEG00000013701) #34	OIT3 (ENSODEG00000014044) #35	PLA2G12B (ENSODEG00000014744) #36	P4HA1 (ENSODEG00000015164) #37	NUDT13 (ENSODEG00000013750)	ENSODEG00000013877	FAM149B1 (ENSODEG00000015139)
Long-tailed chinchilla	MODERN SPECIES	144	PPA1 (ENSCLAG00000013732) #9	NPFFR1 (ENSCLAG00000012308) #10	LRRC20 (ENSCLAG00000013887) #11	EIF4EBP2 (ENSCLAG00000013838) #12	NODAL (ENSCLAG00000016370) #13	PALD1 (ENSCLAG00000010318) #14	PRF1 (ENSCLAG00000014811) #15	ADAMTS14 (ENSCLAG00000011627) #16	TBATA (ENSCLAG00000011271) #17	SGPL1 (ENSCLAG00000011490) #18	PCBD1 (ENSCLAG00000012139) #19	UNC5B (ENSCLAG00000011971) #20	SLC29A3 (ENSCLAG00000016823) #21	C10orf105 (ENSCLAG00000017366)	ENSCLAG00000013972	CDH23 (ENSCLAG00000014323) #22	ENSCLAG00000014700 #24	CHST3 (ENSCLAG00000016693) #25	SPOCK2 (ENSCLAG00000013486) #27	ASCC1 (ENSCLAG00000012962) #28	ANAPC16 (ENSCLAG00000013434) #29	DDIT4 (ENSCLAG00000016774) #30	DNAJB12 (ENSCLAG00000015705) #31	MICU1 (ENSCLAG00000010346) #32	MCU (ENSCLAG00000010032) #34	OIT3 (ENSCLAG00000009749) #35	PLA2G12B (ENSCLAG00000014642) #36	P4HA1 (ENSCLAG00000017260) #37	NUDT13 (ENSCLAG00000014108)	ECD (ENSCLAG00000016794)	FAM149B1 (ENSCLAG00000010159)
Naked mole-rat female	MODERN SPECIES	4	NPFFR1 (ENSHGLG00000034434) #10	LRRC20 (ENSHGLG00000039563) #11	ENSHGLG00000011838 #12	NODAL (ENSHGLG00000011988) #13	ENSHGLG00000042588 #14	PRF1 (ENSHGLG00000048182) #15	ADAMTS14 (ENSHGLG00000012535) #16	TBATA (ENSHGLG00000012813) #17	ENSHGLG00000013376 #18	PCBD1 (ENSHGLG00000049704) #19	ENSHGLG00000014345	UNC5B (ENSHGLG00000014440) #20	SLC29A3 (ENSHGLG00000014732) #21	C10orf105 (ENSHGLG00000019204)	VSIR (ENSHGLG00000019217) #23	ENSHGLG00000015060 #22	PSAP (ENSHGLG00000011266) #24	CHST3 (ENSHGLG00000011547) #25	ENSHGLG00000011871	SPOCK2 (ENSHGLG00000012068) #27	ASCC1 (ENSHGLG00000033774) #28	ANAPC16 (ENSHGLG00000012554) #29	DDIT4 (ENSHGLG00000046524) #30	ENSHGLG00000044651	DNAJB12 (ENSHGLG00000013803) #31	ENSHGLG00000041556	MICU1 (ENSHGLG00000014094) #32	ENSHGLG00000038460	ENSHGLG00000048846 #34	OIT3 (ENSHGLG00000011087) #35	PLA2G12B (ENSHGLG00000048139) #36
Sciuridae	ANCESTRAL SPECIES	30	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00390000015361	ENSGT00530000063727.A
Marmotini	ANCESTRAL SPECIES	44	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00390000015361	ENSGT00530000063727.A.k
Marmotini_b	ANCESTRAL SPECIES	53	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00390000015361	ENSGT00530000063727.A.k
Arctic ground squirrel	MODERN SPECIES	326	PPA1 (ENSUPAG00010004491) #9	NPFFR1 (ENSUPAG00010004476) #10	LRRC20 (ENSUPAG00010004461) #11	EIF4EBP2 (ENSUPAG00010004443) #12	NODAL (ENSUPAG00010004434) #13	PALD1 (ENSUPAG00010004405) #14	PRF1 (ENSUPAG00010004386) #15	ADAMTS14 (ENSUPAG00010004339) #16	ENSUPAG00010004334	SGPL1 (ENSUPAG00010004324) #18	PCBD1 (ENSUPAG00010004314) #19	UNC5B (ENSUPAG00010004261) #20	SLC29A3 (ENSUPAG00010004236) #21	C10orf105 (ENSUPAG00010004231)	VSIR (ENSUPAG00010004213) #23	CDH23 (ENSUPAG00010003250) #22	PSAP (ENSUPAG00010003217) #24	CHST3 (ENSUPAG00010003213) #25	SPOCK2 (ENSUPAG00010003201) #27	ASCC1 (ENSUPAG00010003174) #28	ANAPC16 (ENSUPAG00010003119) #29	DDIT4 (ENSUPAG00010003111) #30	DNAJB12 (ENSUPAG00010003088) #31	MICU1 (ENSUPAG00010002988) #32
Squirrel	MODERN SPECIES	121	SAR1A (ENSSTOG00000012780) #8	PPA1 (ENSSTOG00000030397) #9	NPFFR1 (ENSSTOG00000021939) #10	LRRC20 (ENSSTOG00000025273) #11	EIF4EBP2 (ENSSTOG00000012937) #12	NODAL (ENSSTOG00000012946) #13	PALD1 (ENSSTOG00000012949) #14	PRF1 (ENSSTOG00000012973) #15	ADAMTS14 (ENSSTOG00000002932) #16	TBATA (ENSSTOG00000022281) #17	SGPL1 (ENSSTOG00000002353) #18	PCBD1 (ENSSTOG00000002370) #19	UNC5B (ENSSTOG00000020873) #20	SLC29A3 (ENSSTOG00000008914) #21	C10orf105 (ENSSTOG00000021747)	CDH23 (ENSSTOG00000003414) #22	PSAP (ENSSTOG00000007400) #24	CHST3 (ENSSTOG00000027962) #25	SPOCK2 (ENSSTOG00000006388) #27	ASCC1 (ENSSTOG00000000689) #28	ANAPC16 (ENSSTOG00000000693) #29	DDIT4 (ENSSTOG00000000695) #30	DNAJB12 (ENSSTOG00000000699) #31	MICU1 (ENSSTOG00000000702) #32	MCU (ENSSTOG00000028416) #34	OIT3 (ENSSTOG00000007676) #35	PLA2G12B (ENSSTOG00000007699) #36	P4HA1 (ENSSTOG00000027062) #37	NUDT13 (ENSSTOG00000008578)	ECD (ENSSTOG00000019701)	ENSSTOG00000002142
Alpin marmot	MODERN SPECIES	68	NPFFR1 (ENSMMMG00000007206) #10	LRRC20 (ENSMMMG00000007191) #11	EIF4EBP2 (ENSMMMG00000007182) #12	NODAL (ENSMMMG00000007178) #13	PALD1 (ENSMMMG00000007147) #14	PRF1 (ENSMMMG00000007138) #15	ADAMTS14 (ENSMMMG00000007016) #16	ENSMMMG00000007003	SGPL1 (ENSMMMG00000006959) #18	PCBD1 (ENSMMMG00000006937) #19	UNC5B (ENSMMMG00000006874) #20	SLC29A3 (ENSMMMG00000006860) #21	ENSMMMG00000006858	C10orf105 (ENSMMMG00000006857)	VSIR (ENSMMMG00000006842) #23	CDH23 (ENSMMMG00000005801) #22	PSAP (ENSMMMG00000005760) #24	CHST3 (ENSMMMG00000005753) #25	SPOCK2 (ENSMMMG00000005722) #27	ASCC1 (ENSMMMG00000005702) #28	ANAPC16 (ENSMMMG00000005694) #29	DDIT4 (ENSMMMG00000005677) #30	DNAJB12 (ENSMMMG00000005654) #31	MICU1 (ENSMMMG00000005604) #32	ENSMMMG00000005594	MCU (ENSMMMG00000005424) #34	OIT3 (ENSMMMG00000005409) #35	PLA2G12B (ENSMMMG00000005404) #36	P4HA1 (ENSMMMG00000005277) #37	NUDT13 (ENSMMMG00000005233)	ECD (ENSMMMG00000005200)
Eurasian red squirrel	MODERN SPECIES	13	LRRC20 (ENSSVLG00005000247) #11	ENSSVLG00005000204	EIF4EBP2 (ENSSVLG00005000187) #12	NODAL (ENSSVLG00005021040) #13	PALD1 (ENSSVLG00005020872) #14	PRF1 (ENSSVLG00005020825) #15	ADAMTS14 (ENSSVLG00005020794) #16	TBATA (ENSSVLG00005020718) #17	ENSSVLG00005020680	SGPL1 (ENSSVLG00005020639) #18	PCBD1 (ENSSVLG00005020600) #19	UNC5B (ENSSVLG00005020547) #20	SLC29A3 (ENSSVLG00005020492) #21	C10orf105 (ENSSVLG00005020469)	ENSSVLG00005020446	CDH23 (ENSSVLG00005019200) #22	PSAP (ENSSVLG00005018926) #24	CHST3 (ENSSVLG00005018878) #25	SPOCK2 (ENSSVLG00005018765) #27	ENSSVLG00005018692 #28	ANAPC16 (ENSSVLG00005018642) #29	DDIT4 (ENSSVLG00005018612) #30	DNAJB12 (ENSSVLG00005018455) #31	ENSSVLG00005018393	MICU1 (ENSSVLG00005017837) #32	ENSSVLG00005017690	ENSSVLG00005017630	MCU (ENSSVLG00005017567) #34	OIT3 (ENSSVLG00005017353) #35	PLA2G12B (ENSSVLG00005017277) #36	ENSSVLG00005017216
Laurasiatheria	ANCESTRAL SPECIES	14	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00980000202026	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147834	ENSGT00940000164185	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37
Laurasiatheria_a	ANCESTRAL SPECIES	15	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00980000202026	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000163216	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147834	ENSGT00940000164185	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36
Artiodactyla	ANCESTRAL SPECIES	14	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00980000202026	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163216	ENSGT00940000155245 #22	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00390000015361
Suina	ANCESTRAL SPECIES	6	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00980000202026	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00390000015361	ENSGT00530000063727.A
Pig	DUPLICATION
Pig	MODERN SPECIES	5	NPFFR1 (ENSSSCG00000010266) #10	LRRC20 (ENSSSCG00000010267) #11	EIF4EBP2 (ENSSSCG00000034444) #12	ENSSSCG00000051352	NODAL (ENSSSCG00000039399) #13	PALD1 (ENSSSCG00000036446) #14	PRF1 (ENSSSCG00000010271) #15	ADAMTS14 (ENSSSCG00000010272) #16	TBATA (ENSSSCG00000010273) #17	SGPL1 (ENSSSCG00000010274) #18	PCBD1 (ENSSSCG00000010275) #19	UNC5B (ENSSSCG00000010276) #20	SLC29A3 (ENSSSCG00000010277) #21	ENSSSCG00000059909 #22	C10orf105 (ENSSSCG00000038545)	ENSSSCG00000010278 #22	ENSSSCG00000010280	ENSSSCG00000037377	PSAP (ENSSSCG00000010281) #24	CHST3 (ENSSSCG00000023662) #25	SPOCK2 (ENSSSCG00000010283) #27	ASCC1 (ENSSSCG00000023130) #28	ANAPC16 (ENSSSCG00000061761) #29	DDIT4 (ENSSSCG00000031888) #30	DNAJB12 (ENSSSCG00000010288) #31	MICU1 (ENSSSCG00000010289) #32	MCU (ENSSSCG00000010290) #34	OIT3 (ENSSSCG00000010293) #35	PLA2G12B (ENSSSCG00000010291) #36	P4HA1 (ENSSSCG00000010292) #37	NUDT13 (ENSSSCG00000025492)
Pig	MODERN SPECIES	5	SAR1A (ENSSSCG00000010260) #8	PPA1 (ENSSSCG00000010261) #9	NPFFR1 (ENSSSCG00000010266) #10	LRRC20 (ENSSSCG00000010267) #11	EIF4EBP2 (ENSSSCG00000034444) #12	ENSSSCG00000051352	NODAL (ENSSSCG00000039399) #13	PALD1 (ENSSSCG00000036446) #14	PRF1 (ENSSSCG00000010271) #15	ADAMTS14 (ENSSSCG00000010272) #16	TBATA (ENSSSCG00000010273) #17	SGPL1 (ENSSSCG00000010274) #18	PCBD1 (ENSSSCG00000010275) #19	UNC5B (ENSSSCG00000010276) #20	SLC29A3 (ENSSSCG00000010277) #21	ENSSSCG00000059909 #22	C10orf105 (ENSSSCG00000038545)	ENSSSCG00000010278 #22	ENSSSCG00000010280	ENSSSCG00000037377	PSAP (ENSSSCG00000010281) #24	CHST3 (ENSSSCG00000023662) #25	SPOCK2 (ENSSSCG00000010283) #27	ASCC1 (ENSSSCG00000023130) #28	ANAPC16 (ENSSSCG00000061761) #29	DDIT4 (ENSSSCG00000031888) #30	DNAJB12 (ENSSSCG00000010288) #31	MICU1 (ENSSSCG00000010289) #32	MCU (ENSSSCG00000010290) #34	OIT3 (ENSSSCG00000010293) #35	PLA2G12B (ENSSSCG00000010291) #36
Chacoan peccary	MODERN SPECIES	975	ENSCWAG00000015835 #9	NPFFR1 (ENSCWAG00000015796) #10	LRRC20 (ENSCWAG00000015697) #11	EIF4EBP2 (ENSCWAG00000015658) #12	NODAL (ENSCWAG00000015637) #13	PALD1 (ENSCWAG00000015496) #14	PRF1 (ENSCWAG00000015460) #15	ADAMTS14 (ENSCWAG00000015143) #16	TBATA (ENSCWAG00000015055) #17	SGPL1 (ENSCWAG00000015032) #18	PCBD1 (ENSCWAG00000014992) #19	UNC5B (ENSCWAG00000014854) #20	SLC29A3 (ENSCWAG00000014764) #21	C10orf105 (ENSCWAG00000014717)	VSIR (ENSCWAG00000014686) #23	CDH23 (ENSCWAG00000013081) #22	PSAP (ENSCWAG00000012971) #24	CHST3 (ENSCWAG00000012886) #25	SPOCK2 (ENSCWAG00000012767) #27	ASCC1 (ENSCWAG00000012712) #28	ENSCWAG00000012671 #29	DDIT4 (ENSCWAG00000012642) #30	ENSCWAG00000012605 #31	MICU1 (ENSCWAG00000012517) #32	MCU (ENSCWAG00000012443) #34	OIT3 (ENSCWAG00000012304) #35	PLA2G12B (ENSCWAG00000012253) #36	P4HA1 (ENSCWAG00000011945) #37	NUDT13 (ENSCWAG00000021875)	ECD (ENSCWAG00000021871)	FAM149B1 (ENSCWAG00000021865)
Artiodactyla_a	ANCESTRAL SPECIES	14	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00390000015361	ENSGT00530000063727.A
Artiodactyla_b	ANCESTRAL SPECIES	13	ENSGT00910000146657	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879
Cetacea	ANCESTRAL SPECIES	15	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00950000185589	ENSGT00940000156635 #37
Odontoceti	ANCESTRAL SPECIES	14	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000164185	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00950000185589
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	320																ENSPCTG00005019184 #22	PSAP (ENSPCTG00005019124) #24
Sperm whale	MODERN SPECIES	12	AIFM2 (ENSPCTG00005014407)	TYSND1 (ENSPCTG00005014466) #7	SAR1A (ENSPCTG00005014528) #8	PPA1 (ENSPCTG00005014580) #9	ENSPCTG00005014625 #11	ENSPCTG00005014776	ENSPCTG00005014824	EIF4EBP2 (ENSPCTG00005014870) #12	NODAL (ENSPCTG00005014924) #13	PALD1 (ENSPCTG00005014988) #14	PRF1 (ENSPCTG00005015153) #15	ADAMTS14 (ENSPCTG00005015211) #16	SGPL1 (ENSPCTG00005015728) #18	PCBD1 (ENSPCTG00005015772) #19	SLC29A3 (ENSPCTG00005015832) #20	ENSPCTG00005016034 #22	C20H10orf105 (ENSPCTG00005016335)	VSIR (ENSPCTG00005016352) #23	CHST3 (ENSPCTG00005016377) #25	ENSPCTG00005016423 #27	ASCC1 (ENSPCTG00005016464) #28	ANAPC16 (ENSPCTG00005016583) #29	MICU1 (ENSPCTG00005016668) #32	MCU (ENSPCTG00005016821) #34	ENSPCTG00005016898	OIT3 (ENSPCTG00005016947) #35	PLA2G12B (ENSPCTG00005017127) #36	P4HA1 (ENSPCTG00005017193) #37	ENSPCTG00005017352	NUDT13 (ENSPCTG00005017423)	ECD (ENSPCTG00005017574)
Odontoceti_a	ANCESTRAL SPECIES	11	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000164185	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00950000185589
Odontoceti_b	ANCESTRAL SPECIES	14	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000164185	ENSGT00910000147223	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00950000185589
Monodontidae	ANCESTRAL SPECIES	14	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000164185	ENSGT00910000147223	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00950000185589
Beluga whale	MODERN SPECIES	65	PPA1 (ENSDLEG00000007942) #9	NPFFR1 (ENSDLEG00000019219) #10	LRRC20 (ENSDLEG00000019204) #11	EIF4EBP2 (ENSDLEG00000019193) #12	NODAL (ENSDLEG00000019187) #13	PALD1 (ENSDLEG00000019170) #14	PRF1 (ENSDLEG00000019154) #15	ADAMTS14 (ENSDLEG00000019128) #16	TBATA (ENSDLEG00000019113) #17	SGPL1 (ENSDLEG00000019085) #18	PCBD1 (ENSDLEG00000019075) #19	UNC5B (ENSDLEG00000017208) #20	SLC29A3 (ENSDLEG00000017078) #21	CUNH10orf105 (ENSDLEG00000017071)	VSIR (ENSDLEG00000017058) #23	CDH23 (ENSDLEG00000014973) #22	PSAP (ENSDLEG00000014758) #24	CHST3 (ENSDLEG00000014749)	SPOCK2 (ENSDLEG00000014685) #27	ASCC1 (ENSDLEG00000014655) #28	ANAPC16 (ENSDLEG00000014633) #29	DDIT4 (ENSDLEG00000014622) #30	DNAJB12 (ENSDLEG00000014589) #31	MICU1 (ENSDLEG00000014559) #32	MCU (ENSDLEG00000014528) #34	OIT3 (ENSDLEG00000014505) #35	PLA2G12B (ENSDLEG00000014491) #36	ENSDLEG00000014483	P4HA1 (ENSDLEG00000013986) #37	ECD (ENSDLEG00000013762)	FAM149B1 (ENSDLEG00000013496)
Narwhal	MODERN SPECIES	311	SAR1A (ENSMMNG00015021225) #8	PPA1 (ENSMMNG00015021247) #9	NPFFR1 (ENSMMNG00015021258) #10	LRRC20 (ENSMMNG00015021275) #11	ENSMMNG00015021284	EIF4EBP2 (ENSMMNG00015021294) #12	NODAL (ENSMMNG00015021300) #13	PALD1 (ENSMMNG00015021314) #14	PRF1 (ENSMMNG00015021328) #15	ADAMTS14 (ENSMMNG00015021357) #16	TBATA (ENSMMNG00015021388) #17	SGPL1 (ENSMMNG00015021410) #18	ENSMMNG00015021426 #19	UNC5B (ENSMMNG00015021439) #20	SLC29A3 (ENSMMNG00015021469) #21	CDH23 (ENSMMNG00015021504) #22	C10orf105 (ENSMMNG00015021533)	VSIR (ENSMMNG00015021540) #23	PSAP (ENSMMNG00015021549) #24	ENSMMNG00015021560	ENSMMNG00015021569	SPOCK2 (ENSMMNG00015021581) #27	ASCC1 (ENSMMNG00015021600) #28	ANAPC16 (ENSMMNG00015021610) #29	DDIT4 (ENSMMNG00015021618) #30	DNAJB12 (ENSMMNG00015021629) #31	MICU1 (ENSMMNG00015021650) #32	MCU (ENSMMNG00015021675) #34	OIT3 (ENSMMNG00015021690) #35	PLA2G12B (ENSMMNG00015010314) #36	P4HA1 (ENSMMNG00015010334) #37
Vaquita	MODERN SPECIES	7	SAR1A (ENSPSNG00000020248) #8	PPA1 (ENSPSNG00000020295) #9	NPFFR1 (ENSPSNG00000020327) #10	LRRC20 (ENSPSNG00000020377) #11	ENSPSNG00000020439	ENSPSNG00000020464 #12	NODAL (ENSPSNG00000020491) #13	PALD1 (ENSPSNG00000020534) #14	PRF1 (ENSPSNG00000020654) #15	ADAMTS14 (ENSPSNG00000020694) #16	TBATA (ENSPSNG00000020841) #17	SGPL1 (ENSPSNG00000020906) #18	ENSPSNG00000020953 #19	UNC5B (ENSPSNG00000021006) #20	SLC29A3 (ENSPSNG00000021104) #21	CDH23 (ENSPSNG00000009904) #22	C10orf105 (ENSPSNG00000011646)	VSIR (ENSPSNG00000011665) #23	PSAP (ENSPSNG00000011730) #24	ENSPSNG00000011842	ENSPSNG00000011876	ENSPSNG00000011900	SPOCK2 (ENSPSNG00000011932) #27	ASCC1 (ENSPSNG00000012103) #28	ANAPC16 (ENSPSNG00000012239) #29	DDIT4 (ENSPSNG00000012277) #30	DNAJB12 (ENSPSNG00000012334) #31	MICU1 (ENSPSNG00000012519) #32	MCU (ENSPSNG00000012658) #34	OIT3 (ENSPSNG00000012730) #35	PLA2G12B (ENSPSNG00000012916) #36
Dolphin	MODERN SPECIES	3339																CDH23 (ENSTTRG00000011205) #22	C10orf105 (ENSTTRG00000011209)	VSIR (ENSTTRG00000011211) #23	PSAP (ENSTTRG00000011212) #24
Blue whale	MODERN SPECIES	7	SAR1A (ENSBMSG00010017041) #8	ENSBMSG00010017012 #9	NPFFR1 (ENSBMSG00010016996) #10	LRRC20 (ENSBMSG00010016966) #11	ENSBMSG00010016948	EIF4EBP2 (ENSBMSG00010016927) #12	NODAL (ENSBMSG00010016907) #13	PALD1 (ENSBMSG00010016880) #14	PRF1 (ENSBMSG00010016858) #15	ADAMTS14 (ENSBMSG00010016763) #16	TBATA (ENSBMSG00010016695) #17	SGPL1 (ENSBMSG00010016639) #18	UNC5B (ENSBMSG00010016561) #20	SLC29A3 (ENSBMSG00010016523) #21	VSIR (ENSBMSG00010016464) #23	CDH23 (ENSBMSG00010014850) #22	PSAP (ENSBMSG00010014455) #24	CHST3 (ENSBMSG00010014411) #25	ENSBMSG00010014391	SPOCK2 (ENSBMSG00010014327) #27	ASCC1 (ENSBMSG00010014274) #28	ENSBMSG00010014216 #29	DDIT4 (ENSBMSG00010014188) #30	ENSBMSG00010014165 #31	MICU1 (ENSBMSG00010014085) #32	ENSBMSG00010014025	MCU (ENSBMSG00010014001) #34	OIT3 (ENSBMSG00010013925) #35	PLA2G12B (ENSBMSG00010013870) #36	ENSBMSG00010013853	P4HA1 (ENSBMSG00010013833) #37
Pecora	ANCESTRAL SPECIES	12	ENSGT00910000146657	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00950000182922.a.a.a.a.w.a
Percora_a	ANCESTRAL SPECIES	14	ENSGT00910000146657	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00950000182922.a.a.a.a.w.a
Bovidae	ANCESTRAL SPECIES	27	ENSGT00910000146657	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00950000182869.e.b.b	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37
Caprinae	ANCESTRAL SPECIES	26	ENSGT00910000146657	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00950000182869.e.b.b.gb.b	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37
Goat	MODERN SPECIES	20	SAR1A (ENSCHIG00000018882) #8	PPA1 (ENSCHIG00000016191) #9	NPFFR1 (ENSCHIG00000009482) #10	LRRC20 (ENSCHIG00000009889) #11	EIF4EBP2 (ENSCHIG00000000417) #12	NODAL (ENSCHIG00000000383) #13	PALD1 (ENSCHIG00000000205) #14	PRF1 (ENSCHIG00000000135) #15	ADAMTS14 (ENSCHIG00000014961) #16	TBATA (ENSCHIG00000025343) #17	SGPL1 (ENSCHIG00000014092) #18	PCBD1 (ENSCHIG00000021110) #19	UNC5B (ENSCHIG00000012534) #20	SLC29A3 (ENSCHIG00000016832) #21	VSIR (ENSCHIG00000005813) #23	CDH23 (ENSCHIG00000013062) #22	PSAP (ENSCHIG00000005604) #24	ENSCHIG00000020392	ENSCHIG00000015986	SPOCK2 (ENSCHIG00000011768) #27	ENSCHIG00000000466	ASCC1 (ENSCHIG00000020844) #28	ANAPC16 (ENSCHIG00000016314) #29	DDIT4 (ENSCHIG00000011855) #30	DNAJB12 (ENSCHIG00000001014) #31	MICU1 (ENSCHIG00000021824) #32	MCU (ENSCHIG00000019117) #34	OIT3 (ENSCHIG00000010754) #35	PLA2G12B (ENSCHIG00000010431) #36	P4HA1 (ENSCHIG00000013957) #37	NUDT13 (ENSCHIG00000010096)
Rambouillet Sheep	MODERN SPECIES	17	SAR1A (ENSOARG00020012573) #8	PPA1 (ENSOARG00020012693) #9	NPFFR1 (ENSOARG00020012791) #10	LRRC20 (ENSOARG00020012862) #11	EIF4EBP2 (ENSOARG00020013114) #12	NODAL (ENSOARG00020013160) #13	PALD1 (ENSOARG00020013220) #14	PRF1 (ENSOARG00020013519) #15	ADAMTS14 (ENSOARG00020013561) #16	TBATA (ENSOARG00020013973) #17	SGPL1 (ENSOARG00020014065) #18	ENSOARG00020014160	PCBD1 (ENSOARG00020014228) #19	UNC5B (ENSOARG00020014296) #20	SLC29A3 (ENSOARG00020014446) #21	CDH23 (ENSOARG00020014609) #22	C10orf105 (ENSOARG00020019031)	VSIR (ENSOARG00020019064) #23	PSAP (ENSOARG00020019196) #24	CHST3 (ENSOARG00020019354) #25	SPOCK2 (ENSOARG00020019381) #27	ASCC1 (ENSOARG00020019484) #28	ENSOARG00020019609	ANAPC16 (ENSOARG00020019770) #29	DDIT4 (ENSOARG00020019804) #30	DNAJB12 (ENSOARG00020019843) #31	MICU1 (ENSOARG00020019966) #32	MCU (ENSOARG00020020114) #34	OIT3 (ENSOARG00020020201) #35	PLA2G12B (ENSOARG00020020260) #36	P4HA1 (ENSOARG00020020325) #37
Bovinae	ANCESTRAL SPECIES	30	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00950000182869.e.b.b	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00950000182922.a.a.a.a.w.a	ENSGT00940000158879
American bison	MODERN SPECIES	3223	MACROH2A2 (ENSBBBG00000021899)	AIFM2 (ENSBBBG00000007154)	SAR1A (ENSBBBG00000021871) #8	PPA1 (ENSBBBG00000021831) #9	LRRC20 (ENSBBBG00000021778) #11	EIF4EBP2 (ENSBBBG00000021726) #12	NODAL (ENSBBBG00000005770) #13	PALD1 (ENSBBBG00000021700) #14	PRF1 (ENSBBBG00000007332) #15	ADAMTS14 (ENSBBBG00000021657) #16	TBATA (ENSBBBG00000021619) #17	SGPL1 (ENSBBBG00000005744) #18	PCBD1 (ENSBBBG00000021581) #19	UNC5B (ENSBBBG00000021557) #20	SLC29A3 (ENSBBBG00000021493) #21	CDH23 (ENSBBBG00000021448) #22	C10orf105 (ENSBBBG00000021078)	ENSBBBG00000021057	PSAP (ENSBBBG00000020979) #24	ENSBBBG00000020934	SPOCK2 (ENSBBBG00000020922) #27	ASCC1 (ENSBBBG00000020879) #28	ENSBBBG00000020798	ANAPC16 (ENSBBBG00000020795) #29	DDIT4 (ENSBBBG00000020781) #30	DNAJB12 (ENSBBBG00000020768) #31	MICU1 (ENSBBBG00000020721) #32	MCU (ENSBBBG00000020628) #34	OIT3 (ENSBBBG00000020546) #35	PLA2G12B (ENSBBBG00000020516) #36	P4HA1 (ENSBBBG00000020492) #37
Bos	ANCESTRAL SPECIES	27	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT01100000263481.n.a.a.a.b.a.b.b.a	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00950000182869.e.b.b.eb	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.b.b.a.a.a.b.b.a.b.a	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36
Bos_b	ANCESTRAL SPECIES	32	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT01100000263481.n.a.a.a.b.a.b.b.a	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00950000182869.e.b.b.eb	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.b.b.a.a.a.b.b.a.b.a	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36
Hybrid Bos Indicus	MODERN SPECIES	20	SAR1A (ENSBIXG00005002778) #8	ENSBIXG00005002767	PPA1 (ENSBIXG00005017018) #9	NPFFR1 (ENSBIXG00005016996) #10	LRRC20 (ENSBIXG00005016961) #11	EIF4EBP2 (ENSBIXG00005007045) #12	NODAL (ENSBIXG00005016854) #13	PALD1 (ENSBIXG00005016834) #14	PRF1 (ENSBIXG00005002706) #15	ADAMTS14 (ENSBIXG00005016702) #16	TBATA (ENSBIXG00005016677) #17	SGPL1 (ENSBIXG00005016659) #18	PCBD1 (ENSBIXG00005016622) #19	UNC5B (ENSBIXG00005016596) #20	SLC29A3 (ENSBIXG00005016509) #21	CDH23 (ENSBIXG00005016462) #22	C10orf105 (ENSBIXG00005007031)	VSIR (ENSBIXG00005002601) #23	PSAP (ENSBIXG00005000092) #24	CHST3 (ENSBIXG00005002591) #25	SPOCK2 (ENSBIXG00005016258) #27	ASCC1 (ENSBIXG00005016184) #28	ENSBIXG00005002565	ANAPC16 (ENSBIXG00005016119) #29	DDIT4 (ENSBIXG00005016099) #30	DNAJB12 (ENSBIXG00005016077) #31	MICU1 (ENSBIXG00005016017) #32	ENSBIXG00005015987	MCU (ENSBIXG00005006751) #34	OIT3 (ENSBIXG00005015959) #35	PLA2G12B (ENSBIXG00005015930) #36
Cow	MODERN SPECIES	20	SAR1A (ENSBTAG00000016858) #8	PPA1 (ENSBTAG00000007836) #9	NPFFR1 (ENSBTAG00000010930) #10	LRRC20 (ENSBTAG00000005666) #11	EIF4EBP2 (ENSBTAG00000053726) #12	NODAL (ENSBTAG00000013090) #13	PALD1 (ENSBTAG00000008583) #14	PRF1 (ENSBTAG00000001008) #15	ADAMTS14 (ENSBTAG00000021177) #16	TBATA (ENSBTAG00000021180) #17	SGPL1 (ENSBTAG00000009984) #18	ENSBTAG00000054819	PCBD1 (ENSBTAG00000011866) #19	UNC5B (ENSBTAG00000014270) #20	SLC29A3 (ENSBTAG00000046357) #21	CDH23 (ENSBTAG00000021497) #22	C28H10orf105 (ENSBTAG00000045826)	VSIR (ENSBTAG00000010888) #23	PSAP (ENSBTAG00000021499) #24	CHST3 (ENSBTAG00000011014)	SPOCK2 (ENSBTAG00000008827) #27	ASCC1 (ENSBTAG00000000392) #28	ENSBTAG00000052269	ANAPC16 (ENSBTAG00000000162) #29	DDIT4 (ENSBTAG00000000163) #30	DNAJB12 (ENSBTAG00000013651) #31	MICU1 (ENSBTAG00000005807) #32	MCU (ENSBTAG00000003876) #34	ENSBTAG00000054039	OIT3 (ENSBTAG00000009348) #35	PLA2G12B (ENSBTAG00000009350) #36
Bos_a	ANCESTRAL SPECIES	25	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT01100000263481.n.a.a.a.b.a.b.b.a	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000164185	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.b.b.a.a.a.b.b.a.b.a	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879
Wild yak	MODERN SPECIES	175														C10orf105 (ENSBMUG00000018064)	VSIR (ENSBMUG00000018055) #23	CDH23 (ENSBMUG00000017888) #22	PSAP (ENSBMUG00000017525) #24	ENSBMUG00000017503	SPOCK2 (ENSBMUG00000017481) #27	ENSBMUG00000017443	ENSBMUG00000017433	ASCC1 (ENSBMUG00000017422) #28	ANAPC16 (ENSBMUG00000017410) #29	DDIT4 (ENSBMUG00000017398) #30	DNAJB12 (ENSBMUG00000017389) #31	MICU1 (ENSBMUG00000017369) #32	MCU (ENSBMUG00000017296) #34	OIT3 (ENSBMUG00000017273) #35	PLA2G12B (ENSBMUG00000017237) #36	ENSBMUG00000017226
Domestic yak	MODERN SPECIES	19	ENSBGRG00000021791 #8	PPA1 (ENSBGRG00000021913) #9	NPFFR1 (ENSBGRG00000022142) #10	LRRC20 (ENSBGRG00000022204) #11	EIF4EBP2 (ENSBGRG00000022345) #12	NODAL (ENSBGRG00000022380) #13	PALD1 (ENSBGRG00000022406) #14	PRF1 (ENSBGRG00000022450) #15	ADAMTS14 (ENSBGRG00000022489) #16	TBATA (ENSBGRG00000022601) #17	SGPL1 (ENSBGRG00000022683) #18	ENSBGRG00000022787	PCBD1 (ENSBGRG00000022799) #19	UNC5B (ENSBGRG00000022844) #20	SLC29A3 (ENSBGRG00000022994) #21	CDH23 (ENSBGRG00000023095) #22	ENSBGRG00000023710	VSIR (ENSBGRG00000023721) #23	PSAP (ENSBGRG00000023769) #24	CHST3 (ENSBGRG00000023934) #25	ENSBGRG00000023970	ENSBGRG00000023984	SPOCK2 (ENSBGRG00000024001) #27	ASCC1 (ENSBGRG00000024052) #28	ENSBGRG00000024162	ANAPC16 (ENSBGRG00000024176) #29	DDIT4 (ENSBGRG00000024200) #30	DNAJB12 (ENSBGRG00000024232) #31	MICU1 (ENSBGRG00000024401) #32	ENSBGRG00000024467	MCU (ENSBGRG00000024480) #34
Siberian musk deer	MODERN SPECIES	1227	TYSND1 (ENSMMSG00000024358) #7	SAR1A (ENSMMSG00000024360) #8	PPA1 (ENSMMSG00000024361) #9	NPFFR1 (ENSMMSG00000007616) #10	LRRC20 (ENSMMSG00000007657) #11	EIF4EBP2 (ENSMMSG00000007728) #12	NODAL (ENSMMSG00000007744) #13	PALD1 (ENSMMSG00000007768) #14	PRF1 (ENSMMSG00000007825) #15	ADAMTS14 (ENSMMSG00000007857) #16	TBATA (ENSMMSG00000007916) #17	SGPL1 (ENSMMSG00000007975) #18	PCBD1 (ENSMMSG00000008012) #19	UNC5B (ENSMMSG00000008054) #20	SLC29A3 (ENSMMSG00000008235) #21	CDH23 (ENSMMSG00000008341) #22	C10orf105 (ENSMMSG00000009325)	VSIR (ENSMMSG00000009345) #23	PSAP (ENSMMSG00000009378) #24	ENSMMSG00000009451	SPOCK2 (ENSMMSG00000009487) #27	ASCC1 (ENSMMSG00000009578) #28	ENSMMSG00000009634	ANAPC16 (ENSMMSG00000009645) #29	DDIT4 (ENSMMSG00000009663) #30	DNAJB12 (ENSMMSG00000009689) #31	MICU1 (ENSMMSG00000009754) #32	ENSMMSG00000009830	MCU (ENSMMSG00000009844) #34	OIT3 (ENSMMSG00000009879) #35	PLA2G12B (ENSMMSG00000009960) #36
Yarkand deer	MODERN SPECIES	6	TYSND1 (ENSCHYG00000017542) #7	ENSCHYG00000017615 #8	ENSCHYG00000017704 #9	NPFFR1 (ENSCHYG00000017886) #10	LRRC20 (ENSCHYG00000017938) #11	EIF4EBP2 (ENSCHYG00000018197) #12	NODAL (ENSCHYG00000018236) #13	PALD1 (ENSCHYG00000018335) #14	PRF1 (ENSCHYG00000018881) #15	ADAMTS14 (ENSCHYG00000018984) #16	TBATA (ENSCHYG00000020040) #17	SGPL1 (ENSCHYG00000020136) #18	PCBD1 (ENSCHYG00000020254) #19	UNC5B (ENSCHYG00000020329) #20	SLC29A3 (ENSCHYG00000020569) #21	CDH23 (ENSCHYG00000020685) #22	ENSCHYG00000020973	ENSCHYG00000021011	VSIR (ENSCHYG00000021128) #23	PSAP (ENSCHYG00000021219) #24	ENSCHYG00000021344	ENSCHYG00000021363	SPOCK2 (ENSCHYG00000021397) #27	ASCC1 (ENSCHYG00000021605) #28	ENSCHYG00000021808	ANAPC16 (ENSCHYG00000021839) #29	DDIT4 (ENSCHYG00000021868) #30	DNAJB12 (ENSCHYG00000021937) #31	MCU (ENSCHYG00000022471) #34	OIT3 (ENSCHYG00000022633) #35	PLA2G12B (ENSCHYG00000022733) #36
Camelidae	ANCESTRAL SPECIES	4	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199.a #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000164185	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00390000015361	ENSGT00530000063727.A
Arabian camel	MODERN SPECIES	2	PPA1 (ENSCDRG00005008721) #9	ENSCDRG00005008795	NPFFR1 (ENSCDRG00005008809) #10	ENSCDRG00005008949 #11	EIF4EBP2 (ENSCDRG00005009176) #12	NODAL (ENSCDRG00005009212) #13	PALD1 (ENSCDRG00005009266) #14	PRF1 (ENSCDRG00005009358) #15	ADAMTS14 (ENSCDRG00005009401) #16	TBATA (ENSCDRG00005009574) #17	SGPL1 (ENSCDRG00005009700) #18	PCBD1 (ENSCDRG00005009784) #19	ENSCDRG00005009890	UNC5B (ENSCDRG00005009955) #20	SLC29A3 (ENSCDRG00005010230) #21	CDH23 (ENSCDRG00005010398) #22	C10orf105 (ENSCDRG00005010993)	VSIR (ENSCDRG00005011001) #23	PSAP (ENSCDRG00005011041) #24	ENSCDRG00005011068	SPOCK2 (ENSCDRG00005011109) #27	ASCC1 (ENSCDRG00005011365) #28	ANAPC16 (ENSCDRG00005011452) #29	DDIT4 (ENSCDRG00005011479) #30	DNAJB12 (ENSCDRG00005011516) #31	MICU1 (ENSCDRG00005011650) #32	ENSCDRG00005011811	ENSCDRG00005011833	MCU (ENSCDRG00005011883) #34	OIT3 (ENSCDRG00005011975) #35	PLA2G12B (ENSCDRG00005012068) #36
Laurasiatheria_b	ANCESTRAL SPECIES	15	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000163216	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147834	ENSGT00940000164185	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36
Carnivora	ANCESTRAL SPECIES	16	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163216	ENSGT00940000155245 #22	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147834	ENSGT00940000164185	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37
Caniformia	ANCESTRAL SPECIES	13	ENSGT00910000146657	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147834	ENSGT00940000164185	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36
Caniformia_b	ANCESTRAL SPECIES	10	ENSGT00910000146657	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000164185	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879
Ursidae	ANCESTRAL SPECIES	5	ENSGT00910000146657	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000164185	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	16	ENSAMEG00000030241	SAR1A (ENSAMEG00000017868) #8	PPA1 (ENSAMEG00000017855) #9	NPFFR1 (ENSAMEG00000017851) #10	LRRC20 (ENSAMEG00000017850) #11	ENSAMEG00000024095 #12	NODAL (ENSAMEG00000017846) #13	PALD1 (ENSAMEG00000017827) #14	PRF1 (ENSAMEG00000024297) #15	ADAMTS14 (ENSAMEG00000017807) #16	TBATA (ENSAMEG00000017797) #17	SGPL1 (ENSAMEG00000017782) #18	PCBD1 (ENSAMEG00000017777) #19	UNC5B (ENSAMEG00000017743) #20	SLC29A3 (ENSAMEG00000017739) #21	ENSAMEG00000026866 #22	ENSAMEG00000017649 #22	C10orf105 (ENSAMEG00000024733)	VSIR (ENSAMEG00000017726) #23	ENSAMEG00000017627 #24	ENSAMEG00000017622	SPOCK2 (ENSAMEG00000017406) #27	ASCC1 (ENSAMEG00000017400) #28	ANAPC16 (ENSAMEG00000017397) #29	DDIT4 (ENSAMEG00000029711) #30	DNAJB12 (ENSAMEG00000017385) #31	MICU1 (ENSAMEG00000017374) #32	MCU (ENSAMEG00000017050) #34	OIT3 (ENSAMEG00000017044) #35	PLA2G12B (ENSAMEG00000017034) #36	P4HA1 (ENSAMEG00000017009) #37
Giant Panda	MODERN SPECIES	16	SAR1A (ENSAMEG00000017868) #8	PPA1 (ENSAMEG00000017855) #9	NPFFR1 (ENSAMEG00000017851) #10	LRRC20 (ENSAMEG00000017850) #11	ENSAMEG00000024095 #12	NODAL (ENSAMEG00000017846) #13	PALD1 (ENSAMEG00000017827) #14	PRF1 (ENSAMEG00000024297) #15	ADAMTS14 (ENSAMEG00000017807) #16	TBATA (ENSAMEG00000017797) #17	SGPL1 (ENSAMEG00000017782) #18	PCBD1 (ENSAMEG00000017777) #19	UNC5B (ENSAMEG00000017743) #20	SLC29A3 (ENSAMEG00000017739) #21	ENSAMEG00000026866 #22	ENSAMEG00000017649 #22	C10orf105 (ENSAMEG00000024733)	VSIR (ENSAMEG00000017726) #23	ENSAMEG00000017627 #24	ENSAMEG00000017622	SPOCK2 (ENSAMEG00000017406) #27	ASCC1 (ENSAMEG00000017400) #28	ANAPC16 (ENSAMEG00000017397) #29	DDIT4 (ENSAMEG00000029711) #30	DNAJB12 (ENSAMEG00000017385) #31	MICU1 (ENSAMEG00000017374) #32	MCU (ENSAMEG00000017050) #34	OIT3 (ENSAMEG00000017044) #35	PLA2G12B (ENSAMEG00000017034) #36	P4HA1 (ENSAMEG00000017009) #37	NUDT13 (ENSAMEG00000016988)
Ursus	ANCESTRAL SPECIES	6	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT01050000248355	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163216	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000164185	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37
Polar bear	MODERN SPECIES	197	ENSUMAG00000007919	SAR1A (ENSUMAG00000007921) #8	PPA1 (ENSUMAG00000007936) #9	LRRC20 (ENSUMAG00000007964) #11	EIF4EBP2 (ENSUMAG00000007968) #12	ENSUMAG00000007977 #13	PALD1 (ENSUMAG00000008007) #14	PRF1 (ENSUMAG00000008031) #15	ADAMTS14 (ENSUMAG00000008041) #16	TBATA (ENSUMAG00000008135) #17	SGPL1 (ENSUMAG00000008160) #18	PCBD1 (ENSUMAG00000008163) #19	ENSUMAG00000008171	UNC5B (ENSUMAG00000008182) #20	SLC29A3 (ENSUMAG00000008199) #21	CDH23 (ENSUMAG00000008292) #22	C10orf105 (ENSUMAG00000008857)	ENSUMAG00000008859	PSAP (ENSUMAG00000008862) #24	SPOCK2 (ENSUMAG00000008903) #27	ASCC1 (ENSUMAG00000008959) #28	ANAPC16 (ENSUMAG00000008968) #29	DDIT4 (ENSUMAG00000008971) #30	DNAJB12 (ENSUMAG00000008974) #31	MICU1 (ENSUMAG00000008982) #32	MCU (ENSUMAG00000008996) #34	OIT3 (ENSUMAG00000009001) #35	PLA2G12B (ENSUMAG00000009011) #36	P4HA1 (ENSUMAG00000009024) #37	NUDT13 (ENSUMAG00000009029)	ECD (ENSUMAG00000009039)
Mustelinae	ANCESTRAL SPECIES	31	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000164185	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00390000015361	ENSGT00530000063727.A
Ferret	MODERN SPECIES	310	LRRC20 (ENSMPUG00000004310) #11	EIF4EBP2 (ENSMPUG00000004300) #12	NODAL (ENSMPUG00000004293) #13	PALD1 (ENSMPUG00000004286) #14	PRF1 (ENSMPUG00000004284) #15	ADAMTS14 (ENSMPUG00000004274) #16	TBATA (ENSMPUG00000004211) #17	ENSMPUG00000004207	SGPL1 (ENSMPUG00000004200) #18	PCBD1 (ENSMPUG00000004192) #19	ENSMPUG00000004185	UNC5B (ENSMPUG00000004167) #20	ENSMPUG00000004161	SLC29A3 (ENSMPUG00000004153) #21	VSIR (ENSMPUG00000004148) #23	CDH23 (ENSMPUG00000004122) #22	PSAP (ENSMPUG00000004112) #24	ENSMPUG00000004108	SPOCK2 (ENSMPUG00000004098) #27	ASCC1 (ENSMPUG00000004088) #28	ANAPC16 (ENSMPUG00000004083) #29	DDIT4 (ENSMPUG00000004080) #30	DNAJB12 (ENSMPUG00000004004) #31	ENSMPUG00000003988	MICU1 (ENSMPUG00000003975) #32	MCU (ENSMPUG00000003965) #34	OIT3 (ENSMPUG00000003956) #35	PLA2G12B (ENSMPUG00000003951) #36	P4HA1 (ENSMPUG00000003940) #37	NUDT13 (ENSMPUG00000003934)	ECD (ENSMPUG00000003845)
American mink	MODERN SPECIES	11	PPA1 (ENSNVIG00000010989) #9	NPFFR1 (ENSNVIG00000010976) #10	LRRC20 (ENSNVIG00000010945) #11	EIF4EBP2 (ENSNVIG00000010939) #12	NODAL (ENSNVIG00000010928) #13	PALD1 (ENSNVIG00000010863) #14	PRF1 (ENSNVIG00000010850) #15	ADAMTS14 (ENSNVIG00000010808) #16	TBATA (ENSNVIG00000010780) #17	SGPL1 (ENSNVIG00000010748) #18	PCBD1 (ENSNVIG00000010734) #19	UNC5B (ENSNVIG00000010694) #20	SLC29A3 (ENSNVIG00000010685) #21	C10orf105 (ENSNVIG00000010675)	GI24 (ENSNVIG00000010651) #23	CDH23 (ENSNVIG00000010364) #22	PSAP (ENSNVIG00000010316) #24	ENSNVIG00000010310	ENSNVIG00000010301	SPOCK2 (ENSNVIG00000010272) #27	ASCC1 (ENSNVIG00000010203) #28	APC16 (ENSNVIG00000010175) #29	DDIT4 (ENSNVIG00000010166) #30	DNAJB12 (ENSNVIG00000010150) #31	MICU1 (ENSNVIG00000010026) #32	MCU (ENSNVIG00000009995) #34	OIT3 (ENSNVIG00000009943) #35	PLA2G12B (ENSNVIG00000009935) #36	P4HA1 (ENSNVIG00000009837) #37	NUDT13 (ENSNVIG00000009781)	ECD (ENSNVIG00000009736)
Canidae	ANCESTRAL SPECIES	7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000154451.k.a	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147834	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37
Canis_lupus	ANCESTRAL SPECIES	12	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b.v #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147834	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00950000183375	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36
Dog	MODERN SPECIES	32	SAR1A (ENSCAFG00845004124) #8	ENSCAFG00845004189 #9	NPFFR1 (ENSCAFG00845004215) #10	LRRC20 (ENSCAFG00845004236) #11	EIF4EBP2 (ENSCAFG00845004263) #12	NODAL (ENSCAFG00845004277) #13	PALD1 (ENSCAFG00845004298) #14	PRF1 (ENSCAFG00845004341) #15	ENSCAFG00845004351	ADAMTS14 (ENSCAFG00845004365) #16	ENSCAFG00845004395 #17	SGPL1 (ENSCAFG00845004410) #18	PCBD1 (ENSCAFG00845004424) #19	UNC5B (ENSCAFG00845004449) #20	SLC29A3 (ENSCAFG00845004482) #21	CDH23 (ENSCAFG00845004526) #22	C10orf105 (ENSCAFG00845004573)	VSIR (ENSCAFG00845004580) #23	PSAP (ENSCAFG00845004604) #24	CHST3 (ENSCAFG00845004621) #25	SPOCK2 (ENSCAFG00845004641) #27	ASCC1 (ENSCAFG00845004672) #28	ANAPC16 (ENSCAFG00845005587) #29	DDIT4 (ENSCAFG00845005617) #30	DNAJB12 (ENSCAFG00845005662) #31	MICU1 (ENSCAFG00845005720) #32	ENSCAFG00845005774	MCU (ENSCAFG00845005856) #34	OIT3 (ENSCAFG00845005928) #35	PLA2G12B (ENSCAFG00845005974) #36	P4HA1 (ENSCAFG00845006050) #37
Dingo	MODERN SPECIES	324	ENSCAFG00020025888 #9	NPFFR1 (ENSCAFG00020025884) #10	LRRC20 (ENSCAFG00020025878) #11	EIF4EBP2 (ENSCAFG00020025874) #12	NODAL (ENSCAFG00020025872) #13	PALD1 (ENSCAFG00020025865) #14	PRF1 (ENSCAFG00020025860) #15	ADAMTS14 (ENSCAFG00020025818) #16	TBATA (ENSCAFG00020025801) #17	SGPL1 (ENSCAFG00020025695) #18	PCBD1 (ENSCAFG00020025682) #19	UNC5B (ENSCAFG00020025469) #20	SLC29A3 (ENSCAFG00020025460) #21	ENSCAFG00020025459	VSIR (ENSCAFG00020025457) #23	CDH23 (ENSCAFG00020025203) #22	PSAP (ENSCAFG00020025113) #24	ENSCAFG00020025109	CHST3 (ENSCAFG00020025106) #25	ENSCAFG00020025104	SPOCK2 (ENSCAFG00020025092) #27	ASCC1 (ENSCAFG00020025090) #28	ANAPC16 (ENSCAFG00020025088) #29	DDIT4 (ENSCAFG00020025086) #30	DNAJB12 (ENSCAFG00020025084) #31	MICU1 (ENSCAFG00020025061) #32	ENSCAFG00020025059	MCU (ENSCAFG00020025035) #34	OIT3 (ENSCAFG00020025026) #35	PLA2G12B (ENSCAFG00020025021) #36	P4HA1 (ENSCAFG00020023993) #37
Red fox	MODERN SPECIES	2	SAR1A (ENSVVUG00000021609) #8	PPA1 (ENSVVUG00000021611) #9	ENSVVUG00000021614 #10	LRRC20 (ENSVVUG00000021615) #11	EIF4EBP2 (ENSVVUG00000021616) #12	NODAL (ENSVVUG00000021617) #13	PALD1 (ENSVVUG00000021621) #14	PRF1 (ENSVVUG00000021630) #15	ENSVVUG00000021634	ADAMTS14 (ENSVVUG00000021638) #16	ENSVVUG00000021648 #17	SGPL1 (ENSVVUG00000021656) #18	PCBD1 (ENSVVUG00000021661) #19	UNC5B (ENSVVUG00000021663) #20	SLC29A3 (ENSVVUG00000021668) #21	CDH23 (ENSVVUG00000021729) #22	C10orf105 (ENSVVUG00000022581)	VSIR (ENSVVUG00000022585) #23	PSAP (ENSVVUG00000022592) #24	ENSVVUG00000022602	CHST3 (ENSVVUG00000022603) #25	SPOCK2 (ENSVVUG00000022605) #27	ASCC1 (ENSVVUG00000022616) #28	ANAPC16 (ENSVVUG00000022621) #29	DDIT4 (ENSVVUG00000022623) #30	DNAJB12 (ENSVVUG00000022624) #31	MICU1 (ENSVVUG00000022628) #32	ENSVVUG00000022634	MCU (ENSVVUG00000022639) #34	OIT3 (ENSVVUG00000022645) #35	PLA2G12B (ENSVVUG00000022649) #36
Felidae	ANCESTRAL SPECIES	14	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b.g #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147834	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37
Panthera	ANCESTRAL SPECIES	8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b.g #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147834	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00390000015361
Tiger	DUPLICATION
Tiger	MODERN SPECIES	507	NPFFR1 (ENSPTIG00000015327) #10	LRRC20 (ENSPTIG00000014791) #11	EIF4EBP2 (ENSPTIG00000014411) #12	NODAL (ENSPTIG00000014186) #13	PALD1 (ENSPTIG00000013878) #14	PRF1 (ENSPTIG00000012939) #15	ADAMTS14 (ENSPTIG00000011892) #16	TBATA (ENSPTIG00000011499) #17	SGPL1 (ENSPTIG00000011047) #18	PCBD1 (ENSPTIG00000010960) #19	UNC5B (ENSPTIG00000009579) #20	SLC29A3 (ENSPTIG00000008968) #21	ENSPTIG00000020792 #22	C10orf105 (ENSPTIG00000005727)	ENSPTIG00000020338	ENSPTIG00000018177 #22	PSAP (ENSPTIG00000017371) #24	SPOCK2 (ENSPTIG00000016016) #27	ASCC1 (ENSPTIG00000015725) #28	ANAPC16 (ENSPTIG00000015448) #29	DDIT4 (ENSPTIG00000015125) #30	DNAJB12 (ENSPTIG00000014262) #31	ENSPTIG00000014168	MICU1 (ENSPTIG00000011840) #32	MCU (ENSPTIG00000010955) #34	OIT3 (ENSPTIG00000010140) #35	PLA2G12B (ENSPTIG00000009703) #36	P4HA1 (ENSPTIG00000007711) #37	NUDT13 (ENSPTIG00000005052)	ECD (ENSPTIG00000021876)	FAM149B1 (ENSPTIG00000021647)
Tiger	MODERN SPECIES	507	AIFM2 (ENSPTIG00000016075)	SAR1A (ENSPTIG00000015795) #8	PPA1 (ENSPTIG00000015554) #9	NPFFR1 (ENSPTIG00000015327) #10	LRRC20 (ENSPTIG00000014791) #11	EIF4EBP2 (ENSPTIG00000014411) #12	NODAL (ENSPTIG00000014186) #13	PALD1 (ENSPTIG00000013878) #14	PRF1 (ENSPTIG00000012939) #15	ADAMTS14 (ENSPTIG00000011892) #16	TBATA (ENSPTIG00000011499) #17	SGPL1 (ENSPTIG00000011047) #18	PCBD1 (ENSPTIG00000010960) #19	UNC5B (ENSPTIG00000009579) #20	SLC29A3 (ENSPTIG00000008968) #21	ENSPTIG00000020792 #22	C10orf105 (ENSPTIG00000005727)	ENSPTIG00000020338	ENSPTIG00000018177 #22	PSAP (ENSPTIG00000017371) #24	SPOCK2 (ENSPTIG00000016016) #27	ASCC1 (ENSPTIG00000015725) #28	ANAPC16 (ENSPTIG00000015448) #29	DDIT4 (ENSPTIG00000015125) #30	DNAJB12 (ENSPTIG00000014262) #31	ENSPTIG00000014168	MICU1 (ENSPTIG00000011840) #32	MCU (ENSPTIG00000010955) #34	OIT3 (ENSPTIG00000010140) #35	PLA2G12B (ENSPTIG00000009703) #36	P4HA1 (ENSPTIG00000007711) #37
Panthera_a	ANCESTRAL SPECIES	9	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b.g #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00910000147834	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00390000015361
leopard	DUPLICATION
leopard	MODERN SPECIES	11	ENSPPRG00000023919 #8	ENSPPRG00000024192	PPA1 (ENSPPRG00000024279) #9	NPFFR1 (ENSPPRG00000024413) #10	LRRC20 (ENSPPRG00000021202) #11	EIF4EBP2 (ENSPPRG00000018412) #12	NODAL (ENSPPRG00000014162) #13	PALD1 (ENSPPRG00000013899) #14	PRF1 (ENSPPRG00000012550) #15	ADAMTS14 (ENSPPRG00000012238) #16	TBATA (ENSPPRG00000010303) #17	SGPL1 (ENSPPRG00000009623) #18	PCBD1 (ENSPPRG00000008995) #19	UNC5B (ENSPPRG00000008828) #20	SLC29A3 (ENSPPRG00000007421) #21	ENSPPRG00000006503 #22	C10orf105 (ENSPPRG00000016350)	VSIR (ENSPPRG00000000872) #23	ENSPPRG00000000500 #22	ENSPPRG00000016116 #24	CHST3 (ENSPPRG00000013415) #25	SPOCK2 (ENSPPRG00000011863) #27	ASCC1 (ENSPPRG00000010572) #28	ANAPC16 (ENSPPRG00000010082) #29	DDIT4 (ENSPPRG00000009540) #30	DNAJB12 (ENSPPRG00000009425) #31	MICU1 (ENSPPRG00000008652) #32	MCU (ENSPPRG00000005921) #34	OIT3 (ENSPPRG00000005463) #35	PLA2G12B (ENSPPRG00000004913) #36	P4HA1 (ENSPPRG00000002655) #37
leopard	MODERN SPECIES	11	NPFFR1 (ENSPPRG00000024413) #10	LRRC20 (ENSPPRG00000021202) #11	EIF4EBP2 (ENSPPRG00000018412) #12	NODAL (ENSPPRG00000014162) #13	PALD1 (ENSPPRG00000013899) #14	PRF1 (ENSPPRG00000012550) #15	ADAMTS14 (ENSPPRG00000012238) #16	TBATA (ENSPPRG00000010303) #17	SGPL1 (ENSPPRG00000009623) #18	PCBD1 (ENSPPRG00000008995) #19	UNC5B (ENSPPRG00000008828) #20	SLC29A3 (ENSPPRG00000007421) #21	ENSPPRG00000006503 #22	C10orf105 (ENSPPRG00000016350)	VSIR (ENSPPRG00000000872) #23	ENSPPRG00000000500 #22	ENSPPRG00000016116 #24	CHST3 (ENSPPRG00000013415) #25	SPOCK2 (ENSPPRG00000011863) #27	ASCC1 (ENSPPRG00000010572) #28	ANAPC16 (ENSPPRG00000010082) #29	DDIT4 (ENSPPRG00000009540) #30	DNAJB12 (ENSPPRG00000009425) #31	MICU1 (ENSPPRG00000008652) #32	MCU (ENSPPRG00000005921) #34	OIT3 (ENSPPRG00000005463) #35	PLA2G12B (ENSPPRG00000004913) #36	P4HA1 (ENSPPRG00000002655) #37	NUDT13 (ENSPPRG00000000730)	ECD (ENSPPRG00000023450)	FAM149B1 (ENSPPRG00000023816)
lion	MODERN SPECIES	11	PPA1 (ENSPLOG00000011917) #9	NPFFR1 (ENSPLOG00000011854) #10	LRRC20 (ENSPLOG00000011760) #11	EIF4EBP2 (ENSPLOG00000011707) #12	NODAL (ENSPLOG00000011665) #13	PALD1 (ENSPLOG00000011522) #14	PRF1 (ENSPLOG00000011480) #15	ADAMTS14 (ENSPLOG00000011148) #16	TBATA (ENSPLOG00000011068) #17	SGPL1 (ENSPLOG00000021950) #18	ENSPLOG00000021936 #19	UNC5B (ENSPLOG00000021875) #20	SLC29A3 (ENSPLOG00000021830) #21	C10orf105 (ENSPLOG00000021821)	VSIR (ENSPLOG00000021791) #23	CDH23 (ENSPLOG00000020833) #22	PSAP (ENSPLOG00000020483) #24	CHST3 (ENSPLOG00000020387) #25	ENSPLOG00000020375	SPOCK2 (ENSPLOG00000020310) #27	ASCC1 (ENSPLOG00000020267) #28	ANAPC16 (ENSPLOG00000020247) #29	DDIT4 (ENSPLOG00000020227) #30	DNAJB12 (ENSPLOG00000020121) #31	MICU1 (ENSPLOG00000019846) #32	MCU (ENSPLOG00000019695) #34	OIT3 (ENSPLOG00000019576) #35	PLA2G12B (ENSPLOG00000019527) #36	P4HA1 (ENSPLOG00000019043) #37	NUDT13 (ENSPLOG00000018754)	ECD (ENSPLOG00000018512)
Cat	MODERN SPECIES	242	AIFM2 (ENSFCAG00000001226)	TYSND1 (ENSFCAG00000044166) #7	SAR1A (ENSFCAG00000043085) #8	PPA1 (ENSFCAG00000028251) #9	LRRC20 (ENSFCAG00000001228) #10	EIF4EBP2 (ENSFCAG00000036699) #12	NODAL (ENSFCAG00000001230) #13	PALD1 (ENSFCAG00000001231) #14	PRF1 (ENSFCAG00000028455) #15	ADAMTS14 (ENSFCAG00000001232) #16	TBATA (ENSFCAG00000001233) #17	SGPL1 (ENSFCAG00000001234) #18	PCBD1 (ENSFCAG00000001235) #19	UNC5B (ENSFCAG00000013047) #20	SLC29A3 (ENSFCAG00000013048) #21	CDH23 (ENSFCAG00000025497) #22	CD2H10orf105 (ENSFCAG00000042774)	VSIR (ENSFCAG00000013051) #23	PSAP (ENSFCAG00000013052) #24	CHST3 (ENSFCAG00000013053) #25	ASCC1 (ENSFCAG00000026720) #28	SPOCK2 (ENSFCAG00000013054) #27	ANAPC16 (ENSFCAG00000010368) #29	DDIT4 (ENSFCAG00000029132) #30	DNAJB12 (ENSFCAG00000000724) #31	MICU1 (ENSFCAG00000000725) #32	MCU (ENSFCAG00000022217) #34	PLA2G12B (ENSFCAG00000040049) #36	OIT3 (ENSFCAG00000006693) #35	P4HA1 (ENSFCAG00000018673) #37	ECD (ENSFCAG00000008497)
Laurasiatheria_c	ANCESTRAL SPECIES	15	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163216	ENSGT00940000155245 #22	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00390000015361
Chiroptera	ANCESTRAL SPECIES	6	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000163216	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37
Microchiroptera	ANCESTRAL SPECIES	5	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00390000015361	ENSGT00530000063727.A
Greater horseshoe bat	MODERN SPECIES	7	TYSND1 (ENSRFEG00010010070) #7	SAR1A (ENSRFEG00010010102) #8	PPA1 (ENSRFEG00010010149) #9	ENSRFEG00010010193	NPFFR1 (ENSRFEG00010010307) #10	EIF4EBP2 (ENSRFEG00010010536) #12	NODAL (ENSRFEG00010010575) #13	PALD1 (ENSRFEG00010010635) #14	PRF1 (ENSRFEG00010010708) #15	ADAMTS14 (ENSRFEG00010010774) #16	TBATA (ENSRFEG00010011396) #17	SGPL1 (ENSRFEG00010011573) #18	ENSRFEG00010011644 #19	UNC5B (ENSRFEG00010011696) #20	SLC29A3 (ENSRFEG00010011784) #21	CDH23 (ENSRFEG00010011936) #22	C10orf105 (ENSRFEG00010014321)	VSIR (ENSRFEG00010014343) #23	PSAP (ENSRFEG00010014404) #24	ENSRFEG00010014490	SPOCK2 (ENSRFEG00010014536) #27	ASCC1 (ENSRFEG00010014909) #28	ANAPC16 (ENSRFEG00010014951) #29	DDIT4 (ENSRFEG00010015015) #30	DNAJB12 (ENSRFEG00010015057) #31	MICU1 (ENSRFEG00010015261) #32	MCU (ENSRFEG00010015365) #34	OIT3 (ENSRFEG00010015414) #35	PLA2G12B (ENSRFEG00010015510) #36	ENSRFEG00010015546	P4HA1 (ENSRFEG00010015589) #37
Microbat	MODERN SPECIES	1006														SLC29A3 (ENSMLUG00000015700) #21	ENSMLUG00000010154	CDH23 (ENSMLUG00000015707) #22	PSAP (ENSMLUG00000015746) #24	CHST3 (ENSMLUG00000005485) #25	SPOCK2 (ENSMLUG00000005488) #27	ASCC1 (ENSMLUG00000005491) #28	ANAPC16 (ENSMLUG00000005496) #29	DDIT4 (ENSMLUG00000027643) #30	ENSMLUG00000000015 #31	ENSMLUG00000022285	MICU1 (ENSMLUG00000000016) #32	MCU (ENSMLUG00000013802) #34	OIT3 (ENSMLUG00000013808) #35	PLA2G12B (ENSMLUG00000013816) #36	P4HA1 (ENSMLUG00000006548) #37	NUDT13 (ENSMLUG00000004516)	ECD (ENSMLUG00000004522)
Megabat	MODERN SPECIES	3916																CDH23 (ENSPVAG00000011952) #22	C10orf105 (ENSPVAG00000011959)	ENSPVAG00000011961	PSAP (ENSPVAG00000011963) #24	ENSPVAG00000011966	SPOCK2 (ENSPVAG00000011967) #27
Equus	ANCESTRAL SPECIES	9	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00940000153524.b.a.a	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879
Donkey	DUPLICATION
Donkey	MODERN SPECIES	11	NPFFR1 (ENSEASG00005016050) #10	LRRC20 (ENSEASG00005016051) #11	EIF4EBP2 (ENSEASG00005016053) #12	NODAL (ENSEASG00005016055) #13	PALD1 (ENSEASG00005016057) #14	PRF1 (ENSEASG00005016063) #15	ADAMTS14 (ENSEASG00005016065) #16	TBATA (ENSEASG00005016071) #17	SGPL1 (ENSEASG00005016079) #18	ENSEASG00005027076 #19	ENSEASG00005026727	UNC5B (ENSEASG00005016091) #20	SLC29A3 (ENSEASG00005016096) #21	ENSEASG00005027011 #22	C10orf105 (ENSEASG00005016518)	ENSEASG00005016157 #22	VSIR (ENSEASG00005016520) #23	PSAP (ENSEASG00005016524) #24	CHST3 (ENSEASG00005016530) #25	SPOCK2 (ENSEASG00005016537) #27	ASCC1 (ENSEASG00005016551) #28	ANAPC16 (ENSEASG00005029555) #29	DDIT4 (ENSEASG00005030225) #30	DNAJB12 (ENSEASG00005016559) #31	MICU1 (ENSEASG00005016564) #32	MCU (ENSEASG00005016568) #34	OIT3 (ENSEASG00005016573) #35	PLA2G12B (ENSEASG00005024832) #36	P4HA1 (ENSEASG00005016606) #37	NUDT13 (ENSEASG00005017022)	ECD (ENSEASG00005017058)
Donkey	MODERN SPECIES	11	SAR1A (ENSEASG00005028734) #8	PPA1 (ENSEASG00005016049) #9	NPFFR1 (ENSEASG00005016050) #10	LRRC20 (ENSEASG00005016051) #11	EIF4EBP2 (ENSEASG00005016053) #12	NODAL (ENSEASG00005016055) #13	PALD1 (ENSEASG00005016057) #14	PRF1 (ENSEASG00005016063) #15	ADAMTS14 (ENSEASG00005016065) #16	TBATA (ENSEASG00005016071) #17	SGPL1 (ENSEASG00005016079) #18	ENSEASG00005027076 #19	ENSEASG00005026727	UNC5B (ENSEASG00005016091) #20	SLC29A3 (ENSEASG00005016096) #21	ENSEASG00005027011 #22	C10orf105 (ENSEASG00005016518)	ENSEASG00005016157 #22	VSIR (ENSEASG00005016520) #23	PSAP (ENSEASG00005016524) #24	CHST3 (ENSEASG00005016530) #25	SPOCK2 (ENSEASG00005016537) #27	ASCC1 (ENSEASG00005016551) #28	ANAPC16 (ENSEASG00005029555) #29	DDIT4 (ENSEASG00005030225) #30	DNAJB12 (ENSEASG00005016559) #31	MICU1 (ENSEASG00005016564) #32	MCU (ENSEASG00005016568) #34	OIT3 (ENSEASG00005016573) #35	PLA2G12B (ENSEASG00005024832) #36	P4HA1 (ENSEASG00005016606) #37
Horse	MODERN SPECIES		ENSECAG00000051984	PPA1 (ENSECAG00000018686) #9	NPFFR1 (ENSECAG00000010498) #10	LRRC20 (ENSECAG00000015466) #11	EIF4EBP2 (ENSECAG00000034245) #12	NODAL (ENSECAG00000017055) #13	PALD1 (ENSECAG00000019695) #14	PRF1 (ENSECAG00000012441) #15	ADAMTS14 (ENSECAG00000014713) #16	TBATA (ENSECAG00000014630) #17	SGPL1 (ENSECAG00000016826) #18	PCBD1 (ENSECAG00000009682) #19	ENSECAG00000038298	UNC5B (ENSECAG00000009792) #20	SLC29A3 (ENSECAG00000020891) #21	CDH23 (ENSECAG00000023411) #22	C1H10orf105 (ENSECAG00000031137)	VSIR (ENSECAG00000018133) #23	PSAP (ENSECAG00000021672) #24	CHST3 (ENSECAG00000008012) #25	SPOCK2 (ENSECAG00000009278) #27	ENSECAG00000056109 #27	ASCC1 (ENSECAG00000017211) #28	ANAPC16 (ENSECAG00000002942) #29	DDIT4 (ENSECAG00000004107) #30	DNAJB12 (ENSECAG00000010516) #31	MICU1 (ENSECAG00000017574) #32	MCU (ENSECAG00000006181) #34	ENSECAG00000051275	ENSECAG00000041594	OIT3 (ENSECAG00000009029) #35
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000155245 #22
Common shrew	MODERN SPECIES	6495																ENSSARG00000012724 #22
Hedgehog	MODERN SPECIES	1064																CDH23 (ENSEEUG00000008821) #22
Atlantogenata	ANCESTRAL SPECIES	81																ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37
Xenarthra	ANCESTRAL SPECIES	6	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155509	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31
Armadillo	MODERN SPECIES	2761	EIF4EBP2 (ENSDNOG00000010090) #12	NODAL (ENSDNOG00000017851) #13	PALD1 (ENSDNOG00000044335) #14	ENSDNOG00000034303 #15	ENSDNOG00000042000	ENSDNOG00000003703 #15	ADAMTS14 (ENSDNOG00000019155) #16	TBATA (ENSDNOG00000031360) #17	SGPL1 (ENSDNOG00000040289) #18	PCBD1 (ENSDNOG00000037939) #19	UNC5B (ENSDNOG00000046472) #20	SLC29A3 (ENSDNOG00000030931) #21	ENSDNOG00000038458	C10orf105 (ENSDNOG00000037764)	VSIR (ENSDNOG00000015130) #23	ENSDNOG00000032599 #22	PSAP (ENSDNOG00000018459) #24	CHST3 (ENSDNOG00000013465) #25	SPOCK2 (ENSDNOG00000041677) #27	ASCC1 (ENSDNOG00000006561) #28	ENSDNOG00000006513 #29	DDIT4 (ENSDNOG00000039859) #30	DNAJB12 (ENSDNOG00000031309) #31
Afrotheria	ANCESTRAL SPECIES	4	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37
Afrotheria_a	ANCESTRAL SPECIES	4	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00530000063725 #15	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37
Elephant	MODERN SPECIES	3	TYSND1 (ENSLAFG00000027644) #7	SAR1A (ENSLAFG00000004046) #8	PPA1 (ENSLAFG00000004048) #9	NPFFR1 (ENSLAFG00000004049) #10	LRRC20 (ENSLAFG00000004053) #11	EIF4EBP2 (ENSLAFG00000006809) #12	NODAL (ENSLAFG00000021867) #13	ENSLAFG00000032012 #14	PRF1 (ENSLAFG00000011581) #15	ADAMTS14 (ENSLAFG00000016772) #16	TBATA (ENSLAFG00000006019) #17	SGPL1 (ENSLAFG00000008044) #18	PCBD1 (ENSLAFG00000001397) #19	UNC5B (ENSLAFG00000005324) #20	SLC29A3 (ENSLAFG00000000756) #21	CDH23 (ENSLAFG00000015162) #22	ENSLAFG00000015194	PSAP (ENSLAFG00000015200) #24	CHST3 (ENSLAFG00000015175) #25	SPOCK2 (ENSLAFG00000015179) #27	ASCC1 (ENSLAFG00000015184) #28	ANAPC16 (ENSLAFG00000022069) #29	DDIT4 (ENSLAFG00000031961) #30	DNAJB12 (ENSLAFG00000015077) #31	MICU1 (ENSLAFG00000012267) #32	MCU (ENSLAFG00000004770) #34	OIT3 (ENSLAFG00000009198) #35	PLA2G12B (ENSLAFG00000009203) #36	P4HA1 (ENSLAFG00000002652) #37	NUDT13 (ENSLAFG00000004749)	ECD (ENSLAFG00000004754)
Hyrax	MODERN SPECIES	776																CDH23 (ENSPCAG00000012498) #22	C10orf105 (ENSPCAG00000012965)	VSIR (ENSPCAG00000012987) #23	PSAP (ENSPCAG00000013016) #24
Tenrec	MODERN SPECIES	8155																CDH23 (ENSETEG00000013812) #22
Marsupialia	DUPLICATION
Marsupialia	DUPLICATION
Marsupialia	ANCESTRAL SPECIES		ENSGT01030000234638.a	ENSGT00940000155491.c	ENSGT00940000157447	ENSGT00510000047494	ENSGT00550000075090	ENSGT00940000160162	ENSGT00940000154091.a.b	ENSGT00940000162054	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245.p #22	ENSGT00490000043902	ENSGT00940000163216	ENSGT00940000155245.o.a #22	ENSGT00940000155245.o.b #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00390000015361
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00940000155491.c	ENSGT00940000157447.n	ENSGT00510000047494	ENSGT00550000075090	ENSGT00940000160162	ENSGT00940000154091.a.b	ENSGT00940000162054	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245.p #22	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000163216	ENSGT00940000155245.o.a #22	ENSGT00940000156695.f.a #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590.a #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00390000015361	ENSGT00530000063727.A
Diprotodontia	ANCESTRAL SPECIES	6	ENSGT01030000234638.a	ENSGT00940000155491.c	ENSGT00940000157447.n	ENSGT00510000047494	ENSGT00550000075090	ENSGT00940000160162	ENSGT00940000154091.a.b	ENSGT00940000162054	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000163216	ENSGT00940000155245.o.a #22	ENSGT00940000156695.f.a #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590.a #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00390000015361	ENSGT00530000063727.A
Diprotodontia_a	ANCESTRAL SPECIES	7	ENSGT01030000234638.a	ENSGT00940000155491.c	ENSGT00940000157447.n	ENSGT00510000047494	ENSGT00550000075090	ENSGT00940000160162	ENSGT00940000154091.a.b	ENSGT00940000162054	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000163216	ENSGT00940000155245.o.a #22	ENSGT00940000156695.f.a #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590.a #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00390000015361	ENSGT00530000063727.A
koala	MODERN SPECIES	57	ENSPCIG00000006324	ENSPCIG00000033064	MAN2C1 (ENSPCIG00000006325)	SIN3A (ENSPCIG00000006359)	PTPN9 (ENSPCIG00000007847)	SNUPN (ENSPCIG00000007854)	SNX33 (ENSPCIG00000007859)	CSPG4 (ENSPCIG00000007863)	ODF3L1 (ENSPCIG00000007868)	SGPL1 (ENSPCIG00000027315) #18	PCBD1 (ENSPCIG00000027314) #19	UNC5B (ENSPCIG00000005028) #20	SLC29A3 (ENSPCIG00000005012) #21	C10orf105 (ENSPCIG00000005004)	VSIR (ENSPCIG00000004991) #23	CDH23 (ENSPCIG00000003811) #22	ENSPCIG00000032315 #24	ENSPCIG00000033735 #24	CHST3 (ENSPCIG00000033050) #25	SPOCK2 (ENSPCIG00000036027) #27
Common wonbat	MODERN SPECIES	39	ENSVURG00010012089	COMMD4 (ENSVURG00010012112)	NEIL1 (ENSVURG00010012162)	MAN2C1 (ENSVURG00010012175)	SIN3A (ENSVURG00010012190)	PTPN9 (ENSVURG00010012201)	SNUPN (ENSVURG00010012211)	IMP3 (ENSVURG00010012223)	SNX33 (ENSVURG00010012227)	CSPG4 (ENSVURG00010012231)	ODF3L1 (ENSVURG00010012246)	SGPL1 (ENSVURG00010012260) #18	PCBD1 (ENSVURG00010012270) #19	UNC5B (ENSVURG00010012310) #20	SLC29A3 (ENSVURG00010012438) #21	CDH23 (ENSVURG00010012458) #22	C10orf105 (ENSVURG00010012502)	ENSVURG00010012516	PSAP (ENSVURG00010012541) #24	CHST3 (ENSVURG00010012586) #25	SPOCK2 (ENSVURG00010012606) #27	ASCC1 (ENSVURG00010012620) #28	ANAPC16 (ENSVURG00010012631) #29	DDIT4 (ENSVURG00010012642) #30	DNAJB12 (ENSVURG00010012651) #31	MICU1 (ENSVURG00010012662) #32	MCU (ENSVURG00010012676) #34	OIT3 (ENSVURG00010012696) #35	PLA2G12B (ENSVURG00010012716) #36	P4HA1 (ENSVURG00010012725) #37	NUDT13 (ENSVURG00010012747)
Wallaby	MODERN SPECIES	68																CDH23 (ENSMEUG00000006199) #22	PSAP (ENSMEUG00000006291) #24
Opossum	MODERN SPECIES		NEIL1 (ENSMODG00000009002)	MAN2C1 (ENSMODG00000008990)	SIN3A (ENSMODG00000008922)	PTPN9 (ENSMODG00000008873)	SNUPN (ENSMODG00000008852)	ENSMODG00000025195	IMP3 (ENSMODG00000025193)	SNX33 (ENSMODG00000008837)	CSPG4 (ENSMODG00000008830)	ODF3L1 (ENSMODG00000008815)	SGPL1 (ENSMODG00000008784) #18	PCBD1 (ENSMODG00000008769) #19	ENSMODG00000013009	UNC5B (ENSMODG00000008754) #20	SLC29A3 (ENSMODG00000008718) #21	ENSMODG00000046225 #22	ENSMODG00000010203	EEF1AKMT2 (ENSMODG00000010207)	ABRAXAS2 (ENSMODG00000044079)	ZRANB1 (ENSMODG00000010224)	ENSMODG00000010255	EDRF1 (ENSMODG00000010414)	MMP21 (ENSMODG00000010419)	UROS (ENSMODG00000010434)	BCCIP (ENSMODG00000010449)	DHX32 (ENSMODG00000010478)	FANK1 (ENSMODG00000010518)	ADAM12 (ENSMODG00000010538)	ENSMODG00000010557	ENSMODG00000010562	CCAR1 (ENSMODG00000017358)
Marsupialia	ANCESTRAL SPECIES		ENSGT00940000155491.c	ENSGT00940000157447	ENSGT00510000047494	ENSGT00550000075090	ENSGT00940000160162	ENSGT00940000154091.a.b	ENSGT00940000162054	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245.p #22	ENSGT00490000043902	ENSGT00940000163216	ENSGT00940000155245.o.a #22	ENSGT00940000155245.o.b #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00390000015361	ENSGT00530000063727.A
Opossum	MODERN SPECIES	320																ENSMODG00000000318 #22	C10orf105 (ENSMODG00000038905)	ENSMODG00000000324	ENSMODG00000027488 #24	ENSMODG00000000369 #24	CHST3 (ENSMODG00000046080) #25
Marsupialia	ANCESTRAL SPECIES		ENSGT00530000069184	ENSGT00390000015516	ENSGT00940000153230.C	ENSGT01030000234638.a	ENSGT00940000155491.c	ENSGT00940000157447	ENSGT00510000047494	ENSGT00550000075090	ENSGT00940000160162	ENSGT00940000154091.a.b	ENSGT00940000162054	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245.p #22	ENSGT00490000043902	ENSGT00940000163216	ENSGT00940000155245.o.a #22	ENSGT00940000155245.o.b #22	ENSGT00940000156695.f #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590 #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00530000069184	ENSGT00390000015516	ENSGT00940000153230.C	ENSGT01030000234638.a	ENSGT00940000155491.c	ENSGT00940000157447.n	ENSGT00510000047494	ENSGT00550000075090	ENSGT00940000160162	ENSGT00940000154091.a.b	ENSGT00940000162054	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245.p #22	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000163216	ENSGT00940000155245.o.a #22	ENSGT00940000156695.f.a #24	ENSGT00940000161045 #25	ENSGT00940000157107 #27	ENSGT00390000018119 #28	ENSGT00390000018109 #29	ENSGT00530000063652.b #30	ENSGT00940000155590.a #31	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36
Tasmanian devil	MODERN SPECIES	1	ENSSHAG00000003673	NEIL1 (ENSSHAG00000026516)	MAN2C1 (ENSSHAG00000000841)	SIN3A (ENSSHAG00000001069)	ENSSHAG00000032268	SNUPN (ENSSHAG00000024083)	IMP3 (ENSSHAG00000006200)	SNX33 (ENSSHAG00000025197)	CSPG4 (ENSSHAG00000024035)	ENSSHAG00000008350	ENSSHAG00000008602 #18	PCBD1 (ENSSHAG00000031814) #19	UNC5B (ENSSHAG00000008758) #20	SLC29A3 (ENSSHAG00000009311) #21	C10orf105 (ENSSHAG00000008952)	CDH23 (ENSSHAG00000008177) #22	ENSSHAG00000023479 #24	ENSSHAG00000025612 #24	CHST3 (ENSSHAG00000030012) #25	ASCC1 (ENSSHAG00000006413) #28	SPOCK2 (ENSSHAG00000027200) #27	ENSSHAG00000029766 #29	ENSSHAG00000028461 #30	ENSSHAG00000021152 #31	ENSSHAG00000032209	ENSSHAG00000020601 #31	MICU1 (ENSSHAG00000009207) #32	MCU (ENSSHAG00000031940) #34	OIT3 (ENSSHAG00000006883) #35	PLA2G12B (ENSSHAG00000007300) #36	P4HA1 (ENSSHAG00000030460) #37
Platypus	MODERN SPECIES	14	NPFFR1 (ENSOANG00000043807) #10	LRRC20 (ENSOANG00000039409) #11	EIF4EBP2 (ENSOANG00000041057) #12	ENSOANG00000044417 #13	PALD1 (ENSOANG00000011806) #14	ENSOANG00000039991 #15	ENSOANG00000010037 #15	ADAMTS14 (ENSOANG00000048719) #16	ENSOANG00000002656 #17	SGPL1 (ENSOANG00000011007) #18	PCBD1 (ENSOANG00000030333) #19	UNC5B (ENSOANG00000004338) #20	SLC29A3 (ENSOANG00000043491) #21	ENSOANG00000044553	ENSOANG00000011744	CDH23 (ENSOANG00000041676) #22	PSAP (ENSOANG00000011746) #24	CHST3 (ENSOANG00000015873) #25	SPOCK2 (ENSOANG00000011747) #27	ASCC1 (ENSOANG00000011748) #28	ANAPC16 (ENSOANG00000037927) #29	DDIT4 (ENSOANG00000045405) #30	DNAJB12 (ENSOANG00000046292) #31	MICU1 (ENSOANG00000001130) #32	MCU (ENSOANG00000001129) #34	OIT3 (ENSOANG00000029925) #35	PLA2G12B (ENSOANG00000046451) #36	P4HA1 (ENSOANG00000001125) #37	ENSOANG00000001123	ECD (ENSOANG00000001121)	FAM149B1 (ENSOANG00000001119)
Sauria	ANCESTRAL SPECIES	8	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00940000158426 #16	ENSGT00940000165645	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00960000188766	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00940000156695.e.b ##24	ENSGT00940000156695.e.a ##24	ENSGT00940000161045 #25	ENSGT00390000004582	ENSGT00940000158120	ENSGT00940000154865	ENSGT01000000215701	ENSGT00940000154340.B	ENSGT00940000163077	ENSGT00940000162658.b	ENSGT00940000165949	ENSGT00940000157973	ENSGT00940000155512	ENSGT00950000182787.A
Archelosauria	ANCESTRAL SPECIES	10	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00390000005448 #14	ENSGT00940000158426 #16	ENSGT00940000165645	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00960000188766	ENSGT00950000182898.a.a.b #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00940000156695.e.b ##24	ENSGT00940000156695.e.a ##24	ENSGT00940000161045 #25	ENSGT00390000004582	ENSGT00940000158120	ENSGT00940000154865	ENSGT01000000215701	ENSGT00940000154340.B	ENSGT00940000163077	ENSGT00940000165949	ENSGT00940000157973	ENSGT00940000155512	ENSGT00950000182787.A	ENSGT00950000182787.B
Cryptodira	ANCESTRAL SPECIES	6	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00390000005448 #14	ENSGT00940000158426 #16	ENSGT00940000165645	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00960000188766	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163216	ENSGT00940000156695.e.b ##24	ENSGT00940000156695.e.a ##24	ENSGT00940000161045 #25	ENSGT00390000004582	ENSGT00940000158120	ENSGT00940000154865	ENSGT01000000215701	ENSGT00940000154340.B	ENSGT00940000163077	ENSGT00940000165949	ENSGT00940000157973	ENSGT00940000155512	ENSGT00950000182787.A
Testudinoidea	ANCESTRAL SPECIES	2	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00390000005448 #14	ENSGT00940000158426 #16	ENSGT00940000165645	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00960000188766	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163216	ENSGT00940000156695.e.b ##24	ENSGT00940000156695.e.a ##24	ENSGT00940000161045 #25	ENSGT00390000004582	ENSGT00940000158120	ENSGT00940000154865	ENSGT00940000154340.B	ENSGT00940000163077	ENSGT00940000165949	ENSGT00940000157973	ENSGT00940000155512	ENSGT00950000182787.A	ENSGT00950000182787.B
Emydidae	ANCESTRAL SPECIES	6	ENSGT00940000157107 #27	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00390000005448 #14	ENSGT00940000158426 #16	ENSGT00940000165645	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163216	ENSGT00940000156695.e.b.g ##24	ENSGT00940000156695.e.a ##24	ENSGT00940000161045 #25	ENSGT00390000004582	ENSGT00940000158120	ENSGT00940000154865	ENSGT00940000154340.B	ENSGT00940000163077	ENSGT00940000165949	ENSGT00940000157973	ENSGT00940000155512	ENSGT00950000182787.A	ENSGT00950000182787.B
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	39	LRRC20 (ENSTMTG00000001266) #11	EIF4EBP2 (ENSTMTG00000001273) #12	PALD1 (ENSTMTG00000001289) #14	ADAMTS14 (ENSTMTG00000001363) #16	ENSTMTG00000001496	ENSTMTG00000001517	TBATA (ENSTMTG00000001543) #17	SGPL1 (ENSTMTG00000001564) #18	PCBD1 (ENSTMTG00000001579) #19	UNC5B (ENSTMTG00000001588) #20	SLC29A3 (ENSTMTG00000001617) #21	ENSTMTG00000001684 #22	ENSTMTG00000001888	C10orf105 (ENSTMTG00000001894)	ENSTMTG00000001906	ENSTMTG00000001946 #22	ENSTMTG00000001962 ##24	ENSTMTG00000001976 ##24	ENSTMTG00000001983 ##24	CHST3 (ENSTMTG00000001990) #25	AIFM2 (ENSTMTG00000001997)	MACROH2A2 (ENSTMTG00000002005)	FAM241B (ENSTMTG00000002011)	NEUROG3 (ENSTMTG00000002017)	ENSTMTG00000002029	TSPAN15 (ENSTMTG00000002042)	TACR2 (ENSTMTG00000002049)	HK1 (ENSTMTG00000002268)	HKDC1 (ENSTMTG00000004811)	SUPV3L1 (ENSTMTG00000005038)	VPS26A (ENSTMTG00000006155)
Three-toed box turtle	MODERN SPECIES	39	TYSND1 (ENSTMTG00000001199) #7	SAR1A (ENSTMTG00000001204) #8	PPA1 (ENSTMTG00000001214) #9	NPFFR1 (ENSTMTG00000001235) #10	LRRC20 (ENSTMTG00000001266) #11	EIF4EBP2 (ENSTMTG00000001273) #12	PALD1 (ENSTMTG00000001289) #14	ADAMTS14 (ENSTMTG00000001363) #16	ENSTMTG00000001496	ENSTMTG00000001517	TBATA (ENSTMTG00000001543) #17	SGPL1 (ENSTMTG00000001564) #18	PCBD1 (ENSTMTG00000001579) #19	UNC5B (ENSTMTG00000001588) #20	SLC29A3 (ENSTMTG00000001617) #21	ENSTMTG00000001684 #22	ENSTMTG00000001888	C10orf105 (ENSTMTG00000001894)	ENSTMTG00000001906	ENSTMTG00000001946 #22	ENSTMTG00000001962 ##24	ENSTMTG00000001976 ##24	ENSTMTG00000001983 ##24	CHST3 (ENSTMTG00000001990) #25	AIFM2 (ENSTMTG00000001997)	MACROH2A2 (ENSTMTG00000002005)	FAM241B (ENSTMTG00000002011)	NEUROG3 (ENSTMTG00000002017)	ENSTMTG00000002029	TSPAN15 (ENSTMTG00000002042)	TACR2 (ENSTMTG00000002049)
painted turtle	MODERN SPECIES	786	SAR1A (ENSCPBG00000025882) #8	PPA1 (ENSCPBG00000025884) #9	NPFFR1 (ENSCPBG00000025887) #10	LRRC20 (ENSCPBG00000025888) #11	EIF4EBP2 (ENSCPBG00000025890) #12	PALD1 (ENSCPBG00000025893) #14	ADAMTS14 (ENSCPBG00000025909) #16	ENSCPBG00000025919	ENSCPBG00000025920	TBATA (ENSCPBG00000025921) #17	SGPL1 (ENSCPBG00000025922) #18	PCBD1 (ENSCPBG00000025923) #19	ENSCPBG00000025924	UNC5B (ENSCPBG00000025925) #20	SLC29A3 (ENSCPBG00000025927) #21	CDH23 (ENSCPBG00000025929) #22	C10orf105 (ENSCPBG00000025932)	ENSCPBG00000025933	ENSCPBG00000025934 ##24	ENSCPBG00000025935 ##24	CHST3 (ENSCPBG00000025937) #25	AIFM2 (ENSCPBG00000025938)	MACROH2A2 (ENSCPBG00000025940)	COL13A1 (ENSCPBG00000025943)	ENSCPBG00000025951	FAM241B (ENSCPBG00000025952)	NEUROG3 (ENSCPBG00000025953)	TSPAN15 (ENSCPBG00000000297)	TACR2 (ENSCPBG00000000341)	HK1 (ENSCPBG00000000549)	HKDC1 (ENSCPBG00000000577)
Testudinidae	ANCESTRAL SPECIES	9	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00390000005448 #14	ENSGT00940000158426 #16	ENSGT00940000165645	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00960000188766	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163216	ENSGT00940000156695.e.b ##24	ENSGT00940000156695.e.a ##24	ENSGT00940000161045 #25	ENSGT00390000004582	ENSGT00940000158120	ENSGT00940000154340.B	ENSGT00940000163077	ENSGT00940000157973	ENSGT00940000155512	ENSGT00950000182787.A	ENSGT00950000182787.B	ENSGT00950000182787.E.d.e.a	ENSGT00390000003100
Goode s thornscrub tortoise	DUPLICATION
Goode s thornscrub tortoise	MODERN SPECIES	21	NPFFR1 (ENSGEVG00005011231) #10	LRRC20 (ENSGEVG00005011404) #11	EIF4EBP2 (ENSGEVG00005011424) #12	PALD1 (ENSGEVG00005011455) #14	ADAMTS14 (ENSGEVG00005011606) #16	ENSGEVG00005012192	ENSGEVG00005012350	SGPL1 (ENSGEVG00005012478) #18	PCBD1 (ENSGEVG00005012516) #19	ENSGEVG00005012553	UNC5B (ENSGEVG00005012598) #20	SLC29A3 (ENSGEVG00005012748) #21	ENSGEVG00005012881 #22	C10orf105 (ENSGEVG00005013952)	ENSGEVG00005013966	ENSGEVG00005014038 #22	ENSGEVG00005014429 ##24	ENSGEVG00005014597 ##24	CHST3 (ENSGEVG00005014714) #25	AIFM2 (ENSGEVG00005014772)	MACROH2A2 (ENSGEVG00005014809)	ENSGEVG00005014837	NEUROG3 (ENSGEVG00005014864)	TSPAN15 (ENSGEVG00005014910)	HK1 (ENSGEVG00005014984)	ENSGEVG00005015031	ENSGEVG00005015142	SUPV3L1 (ENSGEVG00005015316)	ENSGEVG00005015603	VPS26A (ENSGEVG00005015616)	KIFBP (ENSGEVG00005015643)
Goode s thornscrub tortoise	MODERN SPECIES	21	TYSND1 (ENSGEVG00005011112) #7	SAR1A (ENSGEVG00005011139) #8	PPA1 (ENSGEVG00005011164) #9	NPFFR1 (ENSGEVG00005011231) #10	LRRC20 (ENSGEVG00005011404) #11	EIF4EBP2 (ENSGEVG00005011424) #12	PALD1 (ENSGEVG00005011455) #14	ADAMTS14 (ENSGEVG00005011606) #16	ENSGEVG00005012192	ENSGEVG00005012350	SGPL1 (ENSGEVG00005012478) #18	PCBD1 (ENSGEVG00005012516) #19	ENSGEVG00005012553	UNC5B (ENSGEVG00005012598) #20	SLC29A3 (ENSGEVG00005012748) #21	ENSGEVG00005012881 #22	C10orf105 (ENSGEVG00005013952)	ENSGEVG00005013966	ENSGEVG00005014038 #22	ENSGEVG00005014429 ##24	ENSGEVG00005014597 ##24	CHST3 (ENSGEVG00005014714) #25	AIFM2 (ENSGEVG00005014772)	MACROH2A2 (ENSGEVG00005014809)	ENSGEVG00005014837	NEUROG3 (ENSGEVG00005014864)	TSPAN15 (ENSGEVG00005014910)	HK1 (ENSGEVG00005014984)	ENSGEVG00005015031	ENSGEVG00005015142	SUPV3L1 (ENSGEVG00005015316)
Abingdon island giant tortoise	MODERN SPECIES	1302																CDH23 (ENSCABG00000019475) #22	C10orf105 (ENSCABG00000019494)	ENSCABG00000019503	ENSCABG00000019541 ##24	ENSCABG00000019547 ##24	AVPI1 (ENSCABG00000019553)
Chinese turtle	MODERN SPECIES	964													UNC5B (ENSPSIG00000016884) #20	SLC29A3 (ENSPSIG00000006565) #21	ENSPSIG00000007176	CDH23 (ENSPSIG00000007185) #22	C10orf105 (ENSPSIG00000001121)	ENSPSIG00000012608	ENSPSIG00000012753 ##24	ENSPSIG00000012914 ##24	CHST3 (ENSPSIG00000013057) #25	AIFM2 (ENSPSIG00000013158)	MACROH2A2 (ENSPSIG00000013591)	COL13A1 (ENSPSIG00000013734)	ENSPSIG00000014049	FAM241B (ENSPSIG00000014054)	NEUROG3 (ENSPSIG00000001125)	ENSPSIG00000014064	TSPAN15 (ENSPSIG00000014930)	HK1 (ENSPSIG00000014935)	HKDC1 (ENSPSIG00000015788)
Archosauria	ANCESTRAL SPECIES	7	ENSGT00390000018119 #28	ENSGT00940000157107 #27	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00390000005448 #14	ENSGT00940000158426 #16	ENSGT00940000165645	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163216	ENSGT00940000156695.e.b ##24	ENSGT00940000156695.e.a ##24	ENSGT00940000161045 #25	ENSGT00390000004582	ENSGT00940000158120	ENSGT00940000170705	ENSGT00940000163077	ENSGT00940000157973	ENSGT00940000155512	ENSGT00950000182787.A	ENSGT00950000182787.B	ENSGT00390000003100	ENSGT00950000183064.a.b.b
Australian saltwater crocodile	MODERN SPECIES	39	SAR1A (ENSCPRG00005009642) #8	PPA1 (ENSCPRG00005009639) #9	NPFFR1 (ENSCPRG00005009626) #10	LRRC20 (ENSCPRG00005009617) #11	EIF4EBP2 (ENSCPRG00005009613) #12	PALD1 (ENSCPRG00005009592) #14	ADAMTS14 (ENSCPRG00005009311) #16	ENSCPRG00005009256	ENSCPRG00005009249	SGPL1 (ENSCPRG00005009241) #18	PCBD1 (ENSCPRG00005009234) #19	UNC5B (ENSCPRG00005008264) #20	SLC29A3 (ENSCPRG00005008086) #21	C10orf105 (ENSCPRG00005008083)	ENSCPRG00005008075	CDH23 (ENSCPRG00005006959) #22	ENSCPRG00005006743	ENSCPRG00005006739 ##24	ENSCPRG00005006728 ##24	CHST3 (ENSCPRG00005006722) #25	AIFM2 (ENSCPRG00005006719)	MACROH2A2 (ENSCPRG00005006718)	ENSCPRG00005006709	TSPAN15 (ENSCPRG00005006695)	TACR2 (ENSCPRG00005006691)	HK1 (ENSCPRG00005006675)	HKDC1 (ENSCPRG00005006452)	SUPV3L1 (ENSCPRG00005006427)	VPS26A (ENSCPRG00005006422)	SRGN (ENSCPRG00005006414)	KIFBP (ENSCPRG00005006411)
Aves	ANCESTRAL SPECIES	6	ENSGT00390000018119 #28	ENSGT00940000157107 #27	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00390000005448 #14	ENSGT00940000158426 #16	ENSGT00940000165645	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163216	ENSGT00940000156695.e.b ##24	ENSGT00940000156695.e.a ##24	ENSGT00940000161045 #25	ENSGT00390000004582	ENSGT00940000158120	ENSGT00940000154865	ENSGT00940000163077	ENSGT00940000157973	ENSGT00940000155512	ENSGT00950000182787.A	ENSGT00950000182787.B	ENSGT00390000003100	ENSGT00950000183064.a.b.b
Neognathae	ANCESTRAL SPECIES	7	ENSGT00390000018119 #28	ENSGT00940000157107 #27	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00390000005448 #14	ENSGT00940000158426 #16	ENSGT00940000165645	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163216	ENSGT00940000156695.e.b ##24	ENSGT00940000156695.e.a ##24	ENSGT00940000161045 #25	ENSGT00390000004582	ENSGT00940000158120	ENSGT00940000154865	ENSGT00940000163077	ENSGT00940000157973	ENSGT00940000155512	ENSGT00950000182787.A	ENSGT00950000182787.B	ENSGT00390000003100	ENSGT00950000183064.a.b.b
Neognathae_b	ANCESTRAL SPECIES	8	ENSGT00390000018119 #28	ENSGT00940000157107 #27	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00390000005448 #14	ENSGT00940000158426 #16	ENSGT00940000165645	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163216	ENSGT00940000156695.e.b ##24	ENSGT00940000156695.e.a ##24	ENSGT00940000161045 #25	ENSGT00390000004582	ENSGT00940000158120	ENSGT00940000154865	ENSGT00940000163077	ENSGT00940000157973	ENSGT00940000155512	ENSGT00950000182787.A	ENSGT00950000182787.B	ENSGT00390000003100	ENSGT00950000183064.a.b.b
Neognathae_c	ANCESTRAL SPECIES	8	ENSGT00390000018119 #28	ENSGT00940000157107 #27	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00390000005448 #14	ENSGT00940000158426 #16	ENSGT00940000165645	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163216	ENSGT00940000156695.e.b ##24	ENSGT00940000156695.e.a ##24	ENSGT00940000161045 #25	ENSGT00390000004582	ENSGT00940000158120	ENSGT00940000157973	ENSGT00940000155512	ENSGT00950000182787.A	ENSGT00950000182787.B	ENSGT00390000003100	ENSGT00950000183064.a.b.b	ENSGT00390000000885	ENSGT00390000013819
Golden eagle	MODERN SPECIES	2	SPOCK2 (ENSACCG00020000532) #27	TYSND1 (ENSACCG00020000583) #7	SAR1A (ENSACCG00020000631) #8	PPA1 (ENSACCG00020000668) #9	NPFFR1 (ENSACCG00020000705) #10	LRRC20 (ENSACCG00020000730) #11	EIF4EBP2 (ENSACCG00020000746) #12	PALD1 (ENSACCG00020000782) #14	ADAMTS14 (ENSACCG00020000955) #16	ENSACCG00020001020	ENSACCG00020001031	SGPL1 (ENSACCG00020001054) #18	PCBD1 (ENSACCG00020001074) #19	UNC5B (ENSACCG00020001173) #20	SLC29A3 (ENSACCG00020001335) #21	CDH23 (ENSACCG00020001571) #22	C10orf105 (ENSACCG00020001899)	ENSACCG00020001911	ENSACCG00020001935 ##24	ENSACCG00020001966 ##24	CHST3 (ENSACCG00020002000) #25	AIFM2 (ENSACCG00020002014)	MACROH2A2 (ENSACCG00020002041)	TSPAN15 (ENSACCG00020002060)	TACR2 (ENSACCG00020002078)	HK1 (ENSACCG00020002100)	HKDC1 (ENSACCG00020002119)	SUPV3L1 (ENSACCG00020002147)	VPS26A (ENSACCG00020002166)	SRGN (ENSACCG00020002183)	KIFBP (ENSACCG00020002201)
Kakapo	MODERN SPECIES	22	SAR1A (ENSSHBG00005012466) #8	PPA1 (ENSSHBG00005012440) #9	NPFFR1 (ENSSHBG00005012427) #10	LRRC20 (ENSSHBG00005012413) #11	EIF4EBP2 (ENSSHBG00005012402) #12	PALD1 (ENSSHBG00005012375) #14	ADAMTS14 (ENSSHBG00005012353) #16	ENSSHBG00005012331	ENSSHBG00005012299	SGPL1 (ENSSHBG00005012274) #18	PCBD1 (ENSSHBG00005012245) #19	UNC5B (ENSSHBG00005012131) #20	SLC29A3 (ENSSHBG00005012056) #21	C10orf105 (ENSSHBG00005012045)	ENSSHBG00005012023	CDH23 (ENSSHBG00005011646) #22	ENSSHBG00005011421 ##24	ENSSHBG00005011380 ##24	CHST3 (ENSSHBG00005011330) #25	MACROH2A2 (ENSSHBG00005011283)	TSPAN15 (ENSSHBG00005011254)	TACR2 (ENSSHBG00005011223)	HK1 (ENSSHBG00005011180)	HKDC1 (ENSSHBG00005011139)	SUPV3L1 (ENSSHBG00005011052)	VPS26A (ENSSHBG00005011020)	SRGN (ENSSHBG00005010984)	KIFBP (ENSSHBG00005010939)	ENSSHBG00005010898	DDX21 (ENSSHBG00005010848)	STOX1 (ENSSHBG00005010818)
Passeriformes	ANCESTRAL SPECIES	35	ENSGT00390000018119 #28	ENSGT00940000157107 #27	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00390000005448 #14	ENSGT00940000158426 #16	ENSGT01090000260608	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000163216	ENSGT00940000156695.e.b ##24	ENSGT00940000156695.e.a ##24	ENSGT00940000161045 #25	ENSGT00390000004582	ENSGT00940000158120	ENSGT00940000154865	ENSGT00940000163077	ENSGT00940000157973	ENSGT00940000155512	ENSGT00950000182787.A	ENSGT00950000182787.B	ENSGT00390000003100
Great tit	MODERN SPECIES	26	SAR1A (ENSPMJG00000015349) #8	PPA1 (ENSPMJG00000015348) #9	NPFFR1 (ENSPMJG00000015347) #10	LRRC20 (ENSPMJG00000015346) #11	EIF4EBP2 (ENSPMJG00000015345) #12	PALD1 (ENSPMJG00000015344) #14	ADAMTS14 (ENSPMJG00000015343) #16	ENSPMJG00000015342	ENSPMJG00000015341	SGPL1 (ENSPMJG00000015340) #18	ENSPMJG00000015339 #19	UNC5B (ENSPMJG00000015066) #20	SLC29A3 (ENSPMJG00000015054) #21	C10orf105 (ENSPMJG00000015053)	ENSPMJG00000015052	CDH23 (ENSPMJG00000014163) #22	ENSPMJG00000014139 ##24	ENSPMJG00000014138 ##24	ENSPMJG00000014115 ##24	CHST3 (ENSPMJG00000014114) #25	AIFM2 (ENSPMJG00000014113)	MACROH2A2 (ENSPMJG00000014112)	COL13A1 (ENSPMJG00000014110)	TSPAN15 (ENSPMJG00000014101)	TACR2 (ENSPMJG00000014099)	HK1 (ENSPMJG00000014079)	HKDC1 (ENSPMJG00000014078)	SUPV3L1 (ENSPMJG00000014025)	VPS26A (ENSPMJG00000014021)	SRGN (ENSPMJG00000014016)	ENSPMJG00000014011
Passeriformes_d	ANCESTRAL SPECIES	7	ENSGT00390000018119 #28	ENSGT00940000157107 #27	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00390000005448 #14	ENSGT00940000158426 #16	ENSGT01090000260608	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000163216	ENSGT00940000156695.e.b ##24	ENSGT00940000156695.e.a ##24	ENSGT00940000161045 #25	ENSGT00390000004582	ENSGT00940000158120	ENSGT00940000154865	ENSGT00940000163077	ENSGT00940000157973	ENSGT00940000155512	ENSGT00950000182787.A	ENSGT00950000182787.B	ENSGT00390000003100
Flycatcher	MODERN SPECIES	25	ENSFALG00000024187 #32	MCU (ENSFALG00000025273) #34	OIT3 (ENSFALG00000012760) #35	PLA2G12B (ENSFALG00000012766) #36	ENSFALG00000025160	ENSFALG00000026034	P4HA1 (ENSFALG00000012773) #37	ENSFALG00000028794	SGPL1 (ENSFALG00000005493) #18	PCBD1 (ENSFALG00000025166) #19	ENSFALG00000012798	UNC5B (ENSFALG00000013380) #20	SLC29A3 (ENSFALG00000013374) #21	C10orf105 (ENSFALG00000029060)	ENSFALG00000013369	CDH23 (ENSFALG00000013275) #22	ENSFALG00000013221 ##24	ENSFALG00000013219 ##24	CHST3 (ENSFALG00000026689) #25	AIFM2 (ENSFALG00000013213)	MACROH2A2 (ENSFALG00000013212)	COL13A1 (ENSFALG00000013182)	TSPAN15 (ENSFALG00000013147)	TACR2 (ENSFALG00000013142)	HK1 (ENSFALG00000013137)	HKDC1 (ENSFALG00000013116)	SUPV3L1 (ENSFALG00000013094)	VPS26A (ENSFALG00000013068)	SRGN (ENSFALG00000023615)	KIFBP (ENSFALG00000013053)	ENSFALG00000013043
Passeriformes_g	ANCESTRAL SPECIES	8	ENSGT00390000018119 #28	ENSGT00940000157107 #27	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00390000005448 #14	ENSGT00940000158426 #16	ENSGT01090000260608	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000163216	ENSGT00940000156695.e.b ##24	ENSGT00940000156695.e.a ##24	ENSGT00940000161045 #25	ENSGT00390000004582	ENSGT00940000158120	ENSGT00940000154865	ENSGT00940000163077	ENSGT00940000157973	ENSGT00940000155512	ENSGT00950000182787.A	ENSGT00950000182787.B	ENSGT00390000003100
Passeroidea	ANCESTRAL SPECIES	7	ENSGT00390000018119 #28	ENSGT00940000157107 #27	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00960000191969	ENSGT00390000005448 #14	ENSGT00940000158426 #16	ENSGT01090000260608	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000156695.e.b ##24	ENSGT00940000156695.e.a ##24	ENSGT00940000161045 #25	ENSGT00390000004582	ENSGT00940000158120	ENSGT00940000154865	ENSGT00940000163077	ENSGT00940000157973	ENSGT00940000155512	ENSGT00950000182787.A	ENSGT00950000182787.B	ENSGT00390000003100
Zebra finch	DUPLICATION
Zebra finch	MODERN SPECIES	28	ANAPC16 (ENSTGUG00000022475) #29	DDIT4 (ENSTGUG00000004471) #30	DNAJB12 (ENSTGUG00000004459) #31	MICU1 (ENSTGUG00000004436) #32	MCU (ENSTGUG00000004428) #34	OIT3 (ENSTGUG00000027061) #35	PLA2G12B (ENSTGUG00000026987) #36	P4HA1 (ENSTGUG00000004364) #37	NUDT13 (ENSTGUG00000004363)	ENSTGUG00000004487	ENSTGUG00000026445	SGPL1 (ENSTGUG00000004333) #18	PCBD1 (ENSTGUG00000019266) #19	UNC5B (ENSTGUG00000004265) #20	SLC29A3 (ENSTGUG00000004247) #21	ENSTGUG00000004184 #22	C10orf105 (ENSTGUG00000020210)	ENSTGUG00000026975 #22	ENSTGUG00000004242	ENSTGUG00000004181 ##24	ENSTGUG00000004140 ##24	CHST3 (ENSTGUG00000021089) #25	AIFM2 (ENSTGUG00000004116)	MACROH2A2 (ENSTGUG00000004103)	NEUROG3 (ENSTGUG00000004028)	TSPAN15 (ENSTGUG00000004009)	TACR2 (ENSTGUG00000004005)	HK1 (ENSTGUG00000003945)	HKDC1 (ENSTGUG00000003932)	VPS26A (ENSTGUG00000003886)	SUPV3L1 (ENSTGUG00000003907)
Zebra finch	MODERN SPECIES	28	DNAJB12 (ENSTGUG00000004459) #31	MICU1 (ENSTGUG00000004436) #32	MCU (ENSTGUG00000004428) #34	OIT3 (ENSTGUG00000027061) #35	PLA2G12B (ENSTGUG00000026987) #36	P4HA1 (ENSTGUG00000004364) #37	NUDT13 (ENSTGUG00000004363)	ENSTGUG00000004487	ENSTGUG00000026445	SGPL1 (ENSTGUG00000004333) #18	PCBD1 (ENSTGUG00000019266) #19	UNC5B (ENSTGUG00000004265) #20	SLC29A3 (ENSTGUG00000004247) #21	ENSTGUG00000004184 #22	C10orf105 (ENSTGUG00000020210)	ENSTGUG00000026975 #22	ENSTGUG00000004242	ENSTGUG00000004181 ##24	ENSTGUG00000004140 ##24	CHST3 (ENSTGUG00000021089) #25	AIFM2 (ENSTGUG00000004116)	MACROH2A2 (ENSTGUG00000004103)	NEUROG3 (ENSTGUG00000004028)	TSPAN15 (ENSTGUG00000004009)	TACR2 (ENSTGUG00000004005)	HK1 (ENSTGUG00000003945)	HKDC1 (ENSTGUG00000003932)	VPS26A (ENSTGUG00000003886)	SUPV3L1 (ENSTGUG00000003907)	SRGN (ENSTGUG00000003885)	KIFBP (ENSTGUG00000003868)
Common canary	MODERN SPECIES	71													SLC29A3 (ENSSCAG00000016550) #21	C10orf105 (ENSSCAG00000016549)	VSIR (ENSSCAG00000016548) #23	CDH23 (ENSSCAG00000016495) #22	ENSSCAG00000016434 ##24	ENSSCAG00000016433 ##24	CHST3 (ENSSCAG00000016432) #25	AIFM2 (ENSSCAG00000016423)	MACROH2A2 (ENSSCAG00000016417)	COL13A1 (ENSSCAG00000016404)	NEUROG3 (ENSSCAG00000016396)	TSPAN15 (ENSSCAG00000016392)	TACR2 (ENSSCAG00000016387)	HK1 (ENSSCAG00000016382)	HKDC1 (ENSSCAG00000016375)	SUPV3L1 (ENSSCAG00000016362)	VPS26A (ENSSCAG00000016354)	SRGN (ENSSCAG00000016352)	KIFBP (ENSSCAG00000016348)
Medium ground finch	MODERN SPECIES	218																CDH23 (ENSGFOG00000013983) #22	C10orf105 (ENSGFOG00000014003)	VSIR (ENSGFOG00000014006) #23	ENSGFOG00000014014 ##24	ENSGFOG00000014023 ##24	AIFM2 (ENSGFOG00000014039)	MACROH2A2 (ENSGFOG00000014041)	TSPAN15 (ENSGFOG00000014043)	TACR2 (ENSGFOG00000014047)	HK1 (ENSGFOG00000014085)	SUPV3L1 (ENSGFOG00000014202)	VPS26A (ENSGFOG00000002189)	SRGN (ENSGFOG00000002515)	ENSGFOG00000002723	DDX21 (ENSGFOG00000002970)	STOX1 (ENSGFOG00000003325)
Galloanserae	ANCESTRAL SPECIES	6	ENSGT00390000018119 #28	ENSGT00940000157107 #27	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00390000005448 #14	ENSGT00940000165645	ENSGT00940000158426 #16	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00940000156695.e.b ##24	ENSGT00940000156695.e.a ##24	ENSGT00940000161045 #25	ENSGT00390000004582	ENSGT00940000158120	ENSGT00940000154865	ENSGT00940000163077	ENSGT00940000157973	ENSGT00940000155512	ENSGT00950000182787.A	ENSGT00950000182787.B	ENSGT00390000003100	ENSGT00950000183064.a.b.b	ENSGT00390000000885
Anatidae	ANCESTRAL SPECIES	4	ENSGT00390000018109 #29	ENSGT00390000018119 #28	ENSGT00390000014627 #7	ENSGT00940000164397.a	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00390000005448 #14	ENSGT00940000165645	ENSGT00940000158426 #16	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00940000163256 #23	ENSGT00940000156695.e.b.c ##24	ENSGT00940000156695.e.a ##24	ENSGT00940000161045 #25	ENSGT00390000004582	ENSGT00940000158120	ENSGT00940000157973	ENSGT00940000155512	ENSGT00950000182787.A	ENSGT00950000182787.B	ENSGT00390000003100	ENSGT00950000183064.a.b.b	ENSGT00390000000885	ENSGT00390000013819
Pink-footed goose	MODERN SPECIES	130	ENSABRG00000021964	TYSND1 (ENSABRG00000021937) #7	PPA1 (ENSABRG00000021927) #9	NPFFR1 (ENSABRG00000021924) #10	LRRC20 (ENSABRG00000021922) #11	EIF4EBP2 (ENSABRG00000021920) #12	PALD1 (ENSABRG00000021918) #14	ADAMTS14 (ENSABRG00000021915) #16	ENSABRG00000021913	ENSABRG00000021912	SGPL1 (ENSABRG00000021909) #18	PCBD1 (ENSABRG00000021907) #19	UNC5B (ENSABRG00000021898) #20	SLC29A3 (ENSABRG00000021896) #21	ENSABRG00000021875	CDH23 (ENSABRG00000021801) #22	ENSABRG00000021790 ##24	ENSABRG00000021776 ##24	CHST3 (ENSABRG00000021774) #25	AIFM2 (ENSABRG00000021773)	MACROH2A2 (ENSABRG00000021712)	TSPAN15 (ENSABRG00000021694)	TACR2 (ENSABRG00000021688)	ENSABRG00000021390	SUPV3L1 (ENSABRG00000021231)	VPS26A (ENSABRG00000021186)	KIFBP (ENSABRG00000021175)	ENSABRG00000021145	DDX21 (ENSABRG00000021081)	CCAR1 (ENSABRG00000020810)	ENSABRG00000020783
Duck	MODERN SPECIES	24	RBP3 (ENSAPLG00000002097)	ENSAPLG00000002179	ANTXRL (ENSAPLG00000002292)	ENSAPLG00000018995	ENSAPLG00000000635	ENSAPLG00000018946	ENSAPLG00000003286	ENSAPLG00000003292	PALD1 (ENSAPLG00000006275) #14	ENSAPLG00000005129	ADAMTS14 (ENSAPLG00000005322) #16	ENSAPLG00000004184	PCBD1 (ENSAPLG00000021420) #19	SGPL1 (ENSAPLG00000003637) #18	ENSAPLG00000017191 #20	CDH23 (ENSAPLG00000008813) #22	VSIR (ENSAPLG00000022193) #23	ENSAPLG00000022662 ##24	ENSAPLG00000021054 ##24	CHST3 (ENSAPLG00000019849) #25	ENSAPLG00000028226 ##24	MACROH2A2 (ENSAPLG00000011576)	AIFM2 (ENSAPLG00000029564)	COL13A1 (ENSAPLG00000012044)	TSPAN15 (ENSAPLG00000012804)	TACR2 (ENSAPLG00000013012)	HK1 (ENSAPLG00000009913)	HKDC1 (ENSAPLG00000011408)	SUPV3L1 (ENSAPLG00000012258)	VPS26A (ENSAPLG00000012577)	SRGN (ENSAPLG00000026405)
Phasianidae	ANCESTRAL SPECIES	6	ENSGT00390000018119 #28	ENSGT00940000157107 #27	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00390000005448 #14	ENSGT00940000165645	ENSGT00940000158426 #16	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00940000156695.e.b ##24	ENSGT00940000156695.e.a ##24	ENSGT00940000161045 #25	ENSGT00390000004582	ENSGT00940000158120	ENSGT00940000154865	ENSGT00940000163077	ENSGT00940000157973	ENSGT00940000155512	ENSGT00950000182787.A	ENSGT00950000182787.B	ENSGT00390000003100	ENSGT00950000183064.a.b.b	ENSGT00390000000885
Phasianidae_b	ANCESTRAL SPECIES	6	ENSGT00390000018119 #28	ENSGT00940000157107 #27	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00390000005448 #14	ENSGT00940000165645	ENSGT00940000158426 #16	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00940000156695.e.b ##24	ENSGT00940000156695.e.a ##24	ENSGT00940000161045 #25	ENSGT00390000004582	ENSGT00940000158120	ENSGT00940000154865	ENSGT00940000163077	ENSGT00940000157973	ENSGT00940000155512	ENSGT00950000182787.A	ENSGT00950000182787.B	ENSGT00390000003100	ENSGT00950000183064.a.b.b	ENSGT00390000000885
Turkey	MODERN SPECIES	28	SAR1A (ENSMGAG00000005387) #8	PPA1 (ENSMGAG00000005328) #9	NPFFR1 (ENSMGAG00000005314) #10	LRRC20 (ENSMGAG00000005310) #11	PALD1 (ENSMGAG00000005289) #14	ENSMGAG00000005259	ADAMTS14 (ENSMGAG00000005261) #16	ENSMGAG00000005217	PCBD1 (ENSMGAG00000005157) #19	SGPL1 (ENSMGAG00000005166) #18	ENSMGAG00000021615	UNC5B (ENSMGAG00000005032) #20	SLC29A3 (ENSMGAG00000005024) #21	ENSMGAG00000018683	ENSMGAG00000004998	CDH23 (ENSMGAG00000004798) #22	ENSMGAG00000021481 ##24	ENSMGAG00000004666 ##24	CHST3 (ENSMGAG00000004651) #25	AIFM2 (ENSMGAG00000004636)	MACROH2A2 (ENSMGAG00000005204)	COL13A1 (ENSMGAG00000004506)	TSPAN15 (ENSMGAG00000004607)	TACR2 (ENSMGAG00000004484)	HK1 (ENSMGAG00000004281)	HKDC1 (ENSMGAG00000018992)	SUPV3L1 (ENSMGAG00000004251)	VPS26A (ENSMGAG00000004241)	SRGN (ENSMGAG00000018423)	DDX21 (ENSMGAG00000004298)	STOX1 (ENSMGAG00000004248)
Chicken	MODERN SPECIES	35	SPOCK2 (ENSGALG00010021659) #27	TYSND1 (ENSGALG00010021664) #7	ENSGALG00010021669	PPA1 (ENSGALG00010021693) #9	NPFFR1 (ENSGALG00010021724) #10	LRRC20 (ENSGALG00010020546) #11	EIF4EBP2 (ENSGALG00010020558) #12	PALD1 (ENSGALG00010020588) #14	ADAMTS14 (ENSGALG00010020285) #16	ENSGALG00010020297	MTTPL (ENSGALG00010020327)	SGPL1 (ENSGALG00010020311) #18	PCBD1 (ENSGALG00010020346) #19	UNC5B (ENSGALG00010020365) #20	SLC29A3 (ENSGALG00010019956) #21	CDH23 (ENSGALG00010020041) #22	C6H10orf54 (ENSGALG00010020063)	ENSGALG00010020066 ##24	PSAP (ENSGALG00010020103) ##24	CHST3 (ENSGALG00010020744) #25	AIFM2 (ENSGALG00010020750)	H2AFY2 (ENSGALG00010020756)	ZCCHC24 (ENSGALG00010020773)	PPIF (ENSGALG00010020782)	ZMIZ1 (ENSGALG00010019977)	RPS24 (ENSGALG00010020723)	POLR3A (ENSGALG00010020737)	DLG5 (ENSGALG00010022105)	KCNMA1 (ENSGALG00010022174)	ENSGALG00010022214	LRMDA (ENSGALG00010022217)
Japanese quail	MODERN SPECIES	24	TYSND1 (ENSCJPG00005009685) #7	SAR1A (ENSCJPG00005009684) #8	PPA1 (ENSCJPG00005009683) #9	NPFFR1 (ENSCJPG00005009682) #10	LRRC20 (ENSCJPG00005009678) #11	EIF4EBP2 (ENSCJPG00005009677) #12	PALD1 (ENSCJPG00005009391) #14	ADAMTS14 (ENSCJPG00005009034) #16	ENSCJPG00005009033	ENSCJPG00005009032	SGPL1 (ENSCJPG00005008971) #18	PCBD1 (ENSCJPG00005008970) #19	UNC5B (ENSCJPG00005007749) #20	SLC29A3 (ENSCJPG00005007739) #21	ENSCJPG00005007738	CDH23 (ENSCJPG00005006766) #22	ENSCJPG00005006740 ##24	ENSCJPG00005006737 ##24	ENSCJPG00005006736 ##24	CHST3 (ENSCJPG00005006732) #25	AIFM2 (ENSCJPG00005006730)	MACROH2A2 (ENSCJPG00005006727)	NEUROG3 (ENSCJPG00005006722)	TSPAN15 (ENSCJPG00005006720)	TACR2 (ENSCJPG00005006716)	HK1 (ENSCJPG00005006707)	HKDC1 (ENSCJPG00005003448)	SUPV3L1 (ENSCJPG00005003431)	VPS26A (ENSCJPG00005003430)	SRGN (ENSCJPG00005003429)	KIFBP (ENSCJPG00005003428)
African ostrich	MODERN SPECIES	169	DNAJB12 (ENSSCUG00000000768) #31	ANAPC16 (ENSSCUG00000000769) #29	ASCC1 (ENSSCUG00000000770) #28	ENSSCUG00000000772	PPA1 (ENSSCUG00000000774) #9	NPFFR1 (ENSSCUG00000000776) #10	ENSSCUG00000000778	ADAMTS14 (ENSSCUG00000000786) #16	ENSSCUG00000000795	ENSSCUG00000000797	ENSSCUG00000000798	SGPL1 (ENSSCUG00000000800) #18	PCBD1 (ENSSCUG00000000803) #19	UNC5B (ENSSCUG00000000816) #20	SLC29A3 (ENSSCUG00000000831) #21	CDH23 (ENSSCUG00000000854) #22	PSAP (ENSSCUG00000000909) ##24	AIFM2 (ENSSCUG00000000920)	MACROH2A2 (ENSSCUG00000000924)	ENSSCUG00000000928	TSPAN15 (ENSSCUG00000000946)	TACR2 (ENSSCUG00000000950)	HKDC1 (ENSSCUG00000000955)	SUPV3L1 (ENSSCUG00000000964)	VPS26A (ENSSCUG00000000971)	KIFBP (ENSSCUG00000000973)	ENSSCUG00000000978	DDX21 (ENSSCUG00000000987)	STOX1 (ENSSCUG00000000992)	CCAR1 (ENSSCUG00000000993)	ENSSCUG00000000997
Lepidosauria	ANCESTRAL SPECIES	8	ENSGT00940000157107 #27	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000163216	ENSGT00940000156695.e.b ##24	ENSGT00940000156695.e.a ##24	ENSGT00940000161045 #25	ENSGT00390000004582	ENSGT00940000158120	ENSGT00940000154340.B	ENSGT00940000163077	ENSGT00940000162658.b	ENSGT00940000165949	ENSGT00940000157973	ENSGT00940000155512	ENSGT00950000182787.A
tuatara	DUPLICATION
tuatara	MODERN SPECIES	1619											UNC5B (ENSSPUG00000016021) #20	SLC29A3 (ENSSPUG00000016049) #21	ENSSPUG00000016118 #22	C10orf105 (ENSSPUG00000016365)	VSIR (ENSSPUG00000016371) #23	ENSSPUG00000016396 #22	PSAP (ENSSPUG00000016447) ##24
tuatara	MODERN SPECIES	1619														UNC5B (ENSSPUG00000016021) #20	SLC29A3 (ENSSPUG00000016049) #21	ENSSPUG00000016118 #22	C10orf105 (ENSSPUG00000016365)	VSIR (ENSSPUG00000016371) #23	ENSSPUG00000016396 #22	PSAP (ENSSPUG00000016447) ##24
Episquamata	ANCESTRAL SPECIES	2	ENSGT00940000157107 #27	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000156695.e.b ##24	ENSGT00940000156695.e.a ##24	ENSGT00940000161045 #25	ENSGT00390000004582	ENSGT00940000158120	ENSGT00940000154340.B	ENSGT00940000163077	ENSGT00940000162658.b	ENSGT00940000165949	ENSGT00940000157973	ENSGT00940000155512	ENSGT00950000182787.A	ENSGT00950000182787.B
Toxicofera	ANCESTRAL SPECIES	2	ENSGT00940000157107 #27	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00940000160223 #13	ENSGT00390000005448 #14	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163216	ENSGT00960000189995	ENSGT00940000156695.e.a ##24	ENSGT00940000161045 #25	ENSGT00390000004582	ENSGT00940000158120	ENSGT00940000154340.B	ENSGT00940000163077	ENSGT00940000165949	ENSGT00940000157973	ENSGT00940000155512	ENSGT00950000182787.A	ENSGT00950000182787.B	ENSGT00390000003100
Lizard	MODERN SPECIES	2	RBM20 (ENSACAG00000015746)	ENSACAG00000040881	PDCD4 (ENSACAG00000015761)	BBIP1 (ENSACAG00000015813)	ENSACAG00000015815	ENSACAG00000036073	ADRA2A (ENSACAG00000015853)	ENSACAG00000043624	ENSACAG00000044603	UNC5B (ENSACAG00000015868) #20	ENSACAG00000043828	SLC29A3 (ENSACAG00000015996) #21	ENSACAG00000038634	ENSACAG00000037014	ENSACAG00000041505	CDH23 (ENSACAG00000028908) #22	C10orf105 (ENSACAG00000028208)	VSIR (ENSACAG00000016392) #23	ENSACAG00000035396	PSAP (ENSACAG00000016414) ##24	CHST3 (ENSACAG00000017793) #25	ENSACAG00000017786	ENSACAG00000017782	ENSACAG00000036877	ENSACAG00000035798	ENSACAG00000035006	ENSACAG00000044964	PCBD1 (ENSACAG00000008843) #19	SGPL1 (ENSACAG00000008740) #18	TBATA (ENSACAG00000008733) #17	ENSACAG00000044956
Elapidae	ANCESTRAL SPECIES	4	ENSGT00390000018109 #29	ENSGT00390000018119 #28	ENSGT00940000157107 #27	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00390000005448 #14	ENSGT00940000158426 #16	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163216	ENSGT00960000189995	ENSGT00940000156695.e.a ##24	ENSGT00940000161045 #25	ENSGT00390000004582	ENSGT00940000158120	ENSGT00940000154340.B	ENSGT00940000163077	ENSGT00940000157973	ENSGT00940000155512	ENSGT00950000182787.A	ENSGT00950000182787.B	ENSGT00390000003100	ENSGT00950000183064.a.b.b
Elapidae_a	ANCESTRAL SPECIES	36	ENSGT00390000018109 #29	ENSGT00390000018119 #28	ENSGT00940000157107 #27	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00390000005448 #14	ENSGT00940000158426 #16	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000163216	ENSGT00960000189995	ENSGT00940000156695.e.a ##24	ENSGT00940000161045 #25	ENSGT00390000004582	ENSGT00940000158120	ENSGT00940000154340.B	ENSGT00940000163077	ENSGT00940000157973	ENSGT00940000155512	ENSGT00950000182787.A	ENSGT00950000182787.B	ENSGT00390000003100
Acanthophiinae	ANCESTRAL SPECIES	36	ENSGT00390000018109 #29	ENSGT00390000018119 #28	ENSGT00940000157107 #27	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00390000005448 #14	ENSGT00940000158426 #16	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000163216	ENSGT00960000189995	ENSGT00940000156695.e.a ##24	ENSGT00940000161045 #25	ENSGT00390000004582	ENSGT00940000158120	ENSGT00940000154340.B	ENSGT00940000163077	ENSGT00940000157973	ENSGT00940000155512	ENSGT00950000182787.A	ENSGT00950000182787.B	ENSGT00390000003100
Eastern brown snake	DUPLICATION
Eastern brown snake	MODERN SPECIES	61	SPOCK2 (ENSPTXG00000017585) #27	TYSND1 (ENSPTXG00000017583) #7	SAR1A (ENSPTXG00000017581) #8	PPA1 (ENSPTXG00000017579) #9	NPFFR1 (ENSPTXG00000017577) #10	LRRC20 (ENSPTXG00000017576) #11	EIF4EBP2 (ENSPTXG00000017575) #12	PALD1 (ENSPTXG00000017574) #14	ADAMTS14 (ENSPTXG00000017572) #16	ENSPTXG00000017571	SGPL1 (ENSPTXG00000017570) #18	PCBD1 (ENSPTXG00000017569) #19	UNC5B (ENSPTXG00000017568) #20	SLC29A3 (ENSPTXG00000017567) #21	C10orf105 (ENSPTXG00000017566)	ENSPTXG00000017531 #22	VSIR (ENSPTXG00000017510) #23	ENSPTXG00000017502 #22	ENSPTXG00000017494	PSAP (ENSPTXG00000017490) ##24	CHST3 (ENSPTXG00000017488) #25	AIFM2 (ENSPTXG00000017476)	MACROH2A2 (ENSPTXG00000017473)	FAM241B (ENSPTXG00000017469)	NEUROG3 (ENSPTXG00000017466)	TSPAN15 (ENSPTXG00000017464)	TACR2 (ENSPTXG00000017461)	HK1 (ENSPTXG00000017459)	HKDC1 (ENSPTXG00000017454)	SUPV3L1 (ENSPTXG00000017452)	VPS26A (ENSPTXG00000017451)
Eastern brown snake	MODERN SPECIES	61	SAR1A (ENSPTXG00000017581) #8	PPA1 (ENSPTXG00000017579) #9	NPFFR1 (ENSPTXG00000017577) #10	LRRC20 (ENSPTXG00000017576) #11	EIF4EBP2 (ENSPTXG00000017575) #12	PALD1 (ENSPTXG00000017574) #14	ADAMTS14 (ENSPTXG00000017572) #16	ENSPTXG00000017571	SGPL1 (ENSPTXG00000017570) #18	PCBD1 (ENSPTXG00000017569) #19	UNC5B (ENSPTXG00000017568) #20	SLC29A3 (ENSPTXG00000017567) #21	C10orf105 (ENSPTXG00000017566)	ENSPTXG00000017531 #22	VSIR (ENSPTXG00000017510) #23	ENSPTXG00000017502 #22	ENSPTXG00000017494	PSAP (ENSPTXG00000017490) ##24	CHST3 (ENSPTXG00000017488) #25	AIFM2 (ENSPTXG00000017476)	MACROH2A2 (ENSPTXG00000017473)	FAM241B (ENSPTXG00000017469)	NEUROG3 (ENSPTXG00000017466)	TSPAN15 (ENSPTXG00000017464)	TACR2 (ENSPTXG00000017461)	HK1 (ENSPTXG00000017459)	HKDC1 (ENSPTXG00000017454)	SUPV3L1 (ENSPTXG00000017452)	VPS26A (ENSPTXG00000017451)	KIFBP (ENSPTXG00000017449)	DDX21 (ENSPTXG00000017448)
Mainland tiger snake	MODERN SPECIES	47													UNC5B (ENSNSUG00000015201) #20	SLC29A3 (ENSNSUG00000015200) #21	C10orf105 (ENSNSUG00000015199)	CDH23 (ENSNSUG00000015138) #22	ENSNSUG00000015132	ENSNSUG00000015131	PSAP (ENSNSUG00000015130) ##24	CHST3 (ENSNSUG00000015129) #25	AIFM2 (ENSNSUG00000015128)	MACROH2A2 (ENSNSUG00000015127)	FAM241B (ENSNSUG00000015125)	NEUROG3 (ENSNSUG00000015124)	TSPAN15 (ENSNSUG00000015076)	TACR2 (ENSNSUG00000015075)	HK1 (ENSNSUG00000015074)	ENSNSUG00000015073	SUPV3L1 (ENSNSUG00000014968)	VPS26A (ENSNSUG00000014964)	ENSNSUG00000014963
Indian cobra	DUPLICATION
Indian cobra	MODERN SPECIES	3	TYSND1 (ENSNNAG00000015759) #7	SAR1A (ENSNNAG00000015746) #8	PPA1 (ENSNNAG00000015727) #9	NPFFR1 (ENSNNAG00000015676) #10	LRRC20 (ENSNNAG00000015646) #11	EIF4EBP2 (ENSNNAG00000015634) #12	PALD1 (ENSNNAG00000015534) #14	ADAMTS14 (ENSNNAG00000015094) #16	ENSNNAG00000015028	SGPL1 (ENSNNAG00000014955) #18	PCBD1 (ENSNNAG00000014895) #19	UNC5B (ENSNNAG00000007493) #20	SLC29A3 (ENSNNAG00000007134) #21	ENSNNAG00000007112	C10orf105 (ENSNNAG00000007103)	ENSNNAG00000006426 #22	ENSNNAG00000006370	ENSNNAG00000006347 #22	ENSNNAG00000006331	PSAP (ENSNNAG00000006274) ##24	CHST3 (ENSNNAG00000006258) #25	ENSNNAG00000006243	AIFM2 (ENSNNAG00000006218)	MACROH2A2 (ENSNNAG00000006198)	FAM241B (ENSNNAG00000006191)	NEUROG3 (ENSNNAG00000006174)	TSPAN15 (ENSNNAG00000006127)	TACR2 (ENSNNAG00000006070)	HK1 (ENSNNAG00000006024)	HKDC1 (ENSNNAG00000005975)	SUPV3L1 (ENSNNAG00000004738)
Indian cobra	MODERN SPECIES	3	PPA1 (ENSNNAG00000015727) #9	NPFFR1 (ENSNNAG00000015676) #10	LRRC20 (ENSNNAG00000015646) #11	EIF4EBP2 (ENSNNAG00000015634) #12	PALD1 (ENSNNAG00000015534) #14	ADAMTS14 (ENSNNAG00000015094) #16	ENSNNAG00000015028	SGPL1 (ENSNNAG00000014955) #18	PCBD1 (ENSNNAG00000014895) #19	UNC5B (ENSNNAG00000007493) #20	SLC29A3 (ENSNNAG00000007134) #21	ENSNNAG00000007112	C10orf105 (ENSNNAG00000007103)	ENSNNAG00000006426 #22	ENSNNAG00000006370	ENSNNAG00000006347 #22	ENSNNAG00000006331	PSAP (ENSNNAG00000006274) ##24	CHST3 (ENSNNAG00000006258) #25	ENSNNAG00000006243	AIFM2 (ENSNNAG00000006218)	MACROH2A2 (ENSNNAG00000006198)	FAM241B (ENSNNAG00000006191)	NEUROG3 (ENSNNAG00000006174)	TSPAN15 (ENSNNAG00000006127)	TACR2 (ENSNNAG00000006070)	HK1 (ENSNNAG00000006024)	HKDC1 (ENSNNAG00000005975)	SUPV3L1 (ENSNNAG00000004738)	VPS26A (ENSNNAG00000004590)	KIFBP (ENSNNAG00000004571)
Laterata	ANCESTRAL SPECIES		ENSGT00390000018119 #28	ENSGT00940000157107 #27	ENSGT00390000014627 #7	ENSGT00940000155276 #8	ENSGT00390000017004.a.b #9	ENSGT01070000253744.b.a.b #10	ENSGT00730000111199 #11	ENSGT00940000155342 #12	ENSGT00390000005448 #14	ENSGT00940000158426 #16	ENSGT00510000048896 #17	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00940000156695.e.b ##24	ENSGT00490000043902	ENSGT00940000163216	ENSGT00960000189995	ENSGT00940000156695.e.a ##24	ENSGT00940000161045 #25	ENSGT00390000004582	ENSGT00940000158120	ENSGT00940000154340.B	ENSGT00940000163077	ENSGT00940000162658.b	ENSGT00940000157973	ENSGT00940000155512	ENSGT00950000182787.A	ENSGT00950000182787.B
Argentine black and white tegu	MODERN SPECIES	22	ENSSMRG00000012807	PPA1 (ENSSMRG00000012806) #9	NPFFR1 (ENSSMRG00000012749) #10	LRRC20 (ENSSMRG00000012748) #11	EIF4EBP2 (ENSSMRG00000012747) #12	PALD1 (ENSSMRG00000012746) #14	ADAMTS14 (ENSSMRG00000011816) #16	ENSSMRG00000011804	TBATA (ENSSMRG00000011782) #17	SGPL1 (ENSSMRG00000011780) #18	PCBD1 (ENSSMRG00000011779) #19	UNC5B (ENSSMRG00000011769) #20	SLC29A3 (ENSSMRG00000011764) #21	C10orf105 (ENSSMRG00000011742)	ENSSMRG00000011734	CDH23 (ENSSMRG00000009106) #22	ENSSMRG00000009057	ENSSMRG00000009055 ##24	ENSSMRG00000009052 ##24	CHST3 (ENSSMRG00000009040) #25	AIFM2 (ENSSMRG00000009038)	MACROH2A2 (ENSSMRG00000009037)	FAM241B (ENSSMRG00000008975)	NEUROG3 (ENSSMRG00000008974)	ENSSMRG00000008970	TSPAN15 (ENSSMRG00000008965)	TACR2 (ENSSMRG00000008946)	HK1 (ENSSMRG00000008942)	HKDC1 (ENSSMRG00000008940)	SUPV3L1 (ENSSMRG00000008937)	VPS26A (ENSSMRG00000008935)
Common wall lizard	MODERN SPECIES	13	ENSPMRG00000005481	ENSPMRG00000005476	ENSPMRG00000005473	PALD1 (ENSPMRG00000005445) #14	ADAMTS14 (ENSPMRG00000005426) #16	ENSPMRG00000005412	TBATA (ENSPMRG00000005403) #17	SGPL1 (ENSPMRG00000005394) #18	PCBD1 (ENSPMRG00000005386) #19	ENSPMRG00000005383	ENSPMRG00000005375	UNC5B (ENSPMRG00000005345) #20	ENSPMRG00000005327	C10orf105 (ENSPMRG00000005323)	ENSPMRG00000005293	CDH23 (ENSPMRG00000005228) #22	ENSPMRG00000005207 ##24	ENSPMRG00000005196 ##24	CHST3 (ENSPMRG00000005190) #25	AIFM2 (ENSPMRG00000005183)	MACROH2A2 (ENSPMRG00000005178)	ENSPMRG00000005177	FAM241B (ENSPMRG00000011147)	NEUROG3 (ENSPMRG00000011140)	ENSPMRG00000011134	TSPAN15 (ENSPMRG00000011128)	TACR2 (ENSPMRG00000011123)	HK1 (ENSPMRG00000011118)	HKDC1 (ENSPMRG00000010717)	SUPV3L1 (ENSPMRG00000010625)	VPS26A (ENSPMRG00000010605)
Anura	ANCESTRAL SPECIES	126	ENSGT00940000155910	ENSGT00940000153912.A	ENSGT00390000007586.a.a	ENSGT00940000165645	ENSGT00390000011412	ENSGT00530000063169.a	ENSGT00940000164026.o.b	ENSGT00510000048896 #17	ENSGT00940000160058.h	ENSGT00390000000046 #18	ENSGT00390000007221.a.b #19	ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b.a #21	ENSGT00490000043902	ENSGT00940000163256 #23	ENSGT00940000155245 #22	ENSGT00940000156695 #24	ENSGT00940000161045 #25	ENSGT00390000004582	ENSGT00940000158120	ENSGT00940000154865	ENSGT00940000154340.B	ENSGT00940000163077	ENSGT00940000170705
Frog	MODERN SPECIES	7	mttp.2 (ENSXETG00000027557)	TBATA (ENSXETG00000033778) #17	XB5893022 [provisional] (ENSXETG00000027560)	sgpl1 (ENSXETG00000008190) #18	pcbd1 (ENSXETG00000008191) #19	ENSXETG00000042990	ENSXETG00000037920	unc5b (ENSXETG00000019901) #20	ENSXETG00000043503	ENSXETG00000046110 #21	slc29a3 (ENSXETG00000049340) #21	ENSXETG00000040893	ENSXETG00000045632	c10orf105 (ENSXETG00000049000)	vsir (ENSXETG00000024966) #23	cdh23 (ENSXETG00000031410) #22	ENSXETG00000042951	psap (ENSXETG00000017158) #24	chst3 (ENSXETG00000049432) #25	aifm2 (ENSXETG00000017152)	macroh2a2 (ENSXETG00000017150)	col13a1 (ENSXETG00000017148)	ENSXETG00000048400	ENSXETG00000006462	ENSXETG00000045093	fam241b (ENSXETG00000006461)	neurog3 (ENSXETG00000026423)	ENSXETG00000048023	camk2g (ENSXETG00000006455)	ndst2 (ENSXETG00000009997)	zswim8 (ENSXETG00000010000)
Leishan spiny toad	MODERN SPECIES	9	ENSLLEG00000017495	ENSLLEG00000017406	TBATA (ENSLLEG00000017265) #17	ENSLLEG00000016940	SGPL1 (ENSLLEG00000016771) #18	PCBD1 (ENSLLEG00000016592) #19	ENSLLEG00000016461	ENSLLEG00000016431	ENSLLEG00000016411	UNC5B (ENSLLEG00000015669) #20	SLC29A3 (ENSLLEG00000015569) #21	ENSLLEG00000015425	C10orf105 (ENSLLEG00000015385)	ENSLLEG00000015275	ENSLLEG00000015155	CDH23 (ENSLLEG00000012574) #22	ENSLLEG00000012312	ENSLLEG00000012271	ENSLLEG00000012219	ENSLLEG00000012201	ENSLLEG00000012184	ENSLLEG00000012157	ENSLLEG00000012097	ENSLLEG00000012070	ENSLLEG00000012021	ENSLLEG00000011976	ENSLLEG00000011927	ENSLLEG00000011883	ENSLLEG00000011858	ENSLLEG00000011767	ENSLLEG00000011420
Coelacanth	DUPLICATION
Coelacanth	DUPLICATION
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	518															ENSLACG00000005415 #22	ENSLACG00000007714 #22	ENSLACG00000009670 #22	ENSLACG00000011036	cdh23 (ENSLACG00000011811) #22	ENSLACG00000012576	psap (ENSLACG00000012699) #24	CHST3 (ENSLACG00000013983) #25	ENSLACG00000014757	AIFM2 (ENSLACG00000014806)	MACROH2A2 (ENSLACG00000014910)
Coelacanth	MODERN SPECIES	518																ENSLACG00000005415 #22	ENSLACG00000007714 #22	ENSLACG00000009670 #22	ENSLACG00000011036	cdh23 (ENSLACG00000011811) #22	ENSLACG00000012576	psap (ENSLACG00000012699) #24	CHST3 (ENSLACG00000013983) #25	ENSLACG00000014757	AIFM2 (ENSLACG00000014806)	MACROH2A2 (ENSLACG00000014910)
Coelacanth	MODERN SPECIES	518														ENSLACG00000005415 #22	ENSLACG00000007714 #22	ENSLACG00000009670 #22	ENSLACG00000011036	cdh23 (ENSLACG00000011811) #22	ENSLACG00000012576	psap (ENSLACG00000012699) #24	CHST3 (ENSLACG00000013983) #25	ENSLACG00000014757	AIFM2 (ENSLACG00000014806)	MACROH2A2 (ENSLACG00000014910)
Coelacanth	MODERN SPECIES	518												ENSLACG00000005415 #22	ENSLACG00000007714 #22	ENSLACG00000009670 #22	ENSLACG00000011036	cdh23 (ENSLACG00000011811) #22	ENSLACG00000012576	psap (ENSLACG00000012699) #24	CHST3 (ENSLACG00000013983) #25	ENSLACG00000014757	AIFM2 (ENSLACG00000014806)	MACROH2A2 (ENSLACG00000014910)
Actinopterygii	ANCESTRAL SPECIES	7														ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00940000156695 #24	ENSGT00940000168294	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00940000166901	ENSGT00390000007694	ENSGT00390000015361	ENSGT00960000190936	ENSGT00530000063727.A	ENSGT00390000014549
Neopterygii	ANCESTRAL SPECIES	10				ENSGT00950000182815.a.a.a.b #20	ENSGT00950000182898.a.a.b #21	ENSGT00940000165949	ENSGT00390000010398.A	ENSGT00940000157052	ENSGT00940000165188	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288	ENSGT00490000043902	ENSGT00940000163216	ENSGT00940000155245 #22	ENSGT00940000156695 #24	ENSGT00940000168294	ENSGT00390000014606	ENSGT00730000111092	ENSGT00950000183079.B #32	ENSGT00940000157528 #34	ENSGT00940000157851 #35	ENSGT00390000008798.d #36	ENSGT00940000156635 #37	ENSGT00940000158879	ENSGT00940000166901	ENSGT00390000007694	ENSGT00390000015361	ENSGT00960000190936	ENSGT00530000063727.A
Osteoglossocephalai	ANCESTRAL SPECIES	50	ENSGT00940000157528 #34	ENSGT00950000183079.B #32	ENSGT00730000111092	ENSGT00390000014606	ENSGT00940000156695 #24	ENSGT00940000165949	ENSGT00950000182898.a.a.b #21	ENSGT00950000182815.a.a.a.b #20	ENSGT00390000010398.A	ENSGT00940000157052	ENSGT00940000165188	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288	ENSGT00940000155245 #22	ENSGT00990000204198	ENSGT00940000163216
Clupeocephala	ANCESTRAL SPECIES	135												ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288	ENSGT00940000155245 #22	ENSGT00990000204198	ENSGT00940000163216	ENSGT00950000183181.A.a	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00980000203010	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000164549.a.a	ENSGT00940000180268	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378
Otomorpha	ANCESTRAL SPECIES	530															ENSGT00940000163216	ENSGT00940000155245 #22	ENSGT00990000204198	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00950000182850.a.a.b
Clupeiformes	ANCESTRAL SPECIES	379																ENSGT00940000155245 #22	ENSGT00990000204198	ENSGT00940000163216	ENSGT00390000000411	ENSGT00940000159378	ENSGT00390000011010.a.b	ENSGT00940000158924	ENSGT00940000158284	ENSGT00940000159342.b	ENSGT00800000124177	ENSGT00530000063564.a	ENSGT00500000044926	ENSGT00940000155447
Atlantic herring	MODERN SPECIES	4	ENSCHAG00000016844	ENSCHAG00000016804	calm3a (ENSCHAG00000016632)	si:ch211-93n23.7 (ENSCHAG00000016601)	ENSCHAG00000015629	mcfd2 (ENSCHAG00000015596)	ENSCHAG00000015540	socs5b (ENSCHAG00000015533)	PRKCE (ENSCHAG00000014796)	epas1b (ENSCHAG00000013797)	ENSCHAG00000013758	ENSCHAG00000013697	ENSCHAG00000013687	ENSCHAG00000013678	vsir (ENSCHAG00000013637)	cdh23 (ENSCHAG00000010209) #22	eif3s6ip (ENSCHAG00000009927)	dnajc12 (ENSCHAG00000009852)	cox5b2 (ENSCHAG00000009837)	HERC4 (ENSCHAG00000009628)	ENSCHAG00000009536	ENSCHAG00000009520	mlh1 (ENSCHAG00000009405)	lrrfip2 (ENSCHAG00000008980)	ATE1 (ENSCHAG00000008664)	fgfr2 (ENSCHAG00000001587)	ENSCHAG00000024901	ENSCHAG00000024894	ENSCHAG00000024889	NEU3 (ENSCHAG00000024887)	DHX57 (ENSCHAG00000024807)
Denticle herring	MODERN SPECIES	11	ENSDCDG00000024276	ENSDCDG00000024279	foxi1 (ENSDCDG00000024281)	dock1 (ENSDCDG00000024629)	INSYN2A (ENSDCDG00000031457)	ADAM12 (ENSDCDG00000031471)	CTBP2 (ENSDCDG00000031692)	mmp21 (ENSDCDG00000031771)	uros (ENSDCDG00000031773)	bccip (ENSDCDG00000031778)	dhx32a (ENSDCDG00000031780)	ENSDCDG00000031785	zgc:154058 (ENSDCDG00000031787)	mat1a (ENSDCDG00000031794)	selenou1a (ENSDCDG00000031799)	cdh23 (ENSDCDG00000031852) #22	ENSDCDG00000032271	ybx1 (ENSDCDG00000032273)	vsir (ENSDCDG00000032275)	eif3s6ip (ENSDCDG00000032284)	dnajc12 (ENSDCDG00000032537)	cox5b2 (ENSDCDG00000032540)	HERC4 (ENSDCDG00000032560)	ENSDCDG00000032698	ENSDCDG00000032701	mlh1 (ENSDCDG00000032704)	lrrfip2 (ENSDCDG00000032716)	ENSDCDG00000032738	ATE1 (ENSDCDG00000032749)	fgfr2 (ENSDCDG00000032762)	ENSDCDG00000000173
Otophysi	ANCESTRAL SPECIES	288															ENSGT00940000163216	ENSGT00940000155245 #22	ENSGT00990000204198	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00950000182850.a.a.b	ENSGT00950000182936.a.b.a	ENSGT00940000159639	ENSGT00940000159201	ENSGT00390000014679.d.a	ENSGT00940000157913.b.b	ENSGT00390000005242	ENSGT00390000004313	ENSGT00940000157359	ENSGT00940000154644.jb.b.h	ENSGT00940000154800
Characiphysae	ANCESTRAL SPECIES	31	ENSGT00390000016613.c.e.a	ENSGT00950000182844.a.b	ENSGT00940000157715	ENSGT00940000165706	ENSGT00730000112145	ENSGT00390000017845	ENSGT00990000210926	ENSGT00940000156598.c.b	ENSGT00940000154629.B	ENSGT00940000155718.a	ENSGT00940000154641.B.a.c	ENSGT00390000003245	ENSGT01100000263505.a.b	ENSGT00990000204198	ENSGT00940000163216	ENSGT00940000155245 #22	ENSGT00390000018436.a.b	ENSGT00390000000411	ENSGT00950000183181.A.a	ENSGT00950000182850.a.a.b	ENSGT00950000182936.a.b.a	ENSGT00940000159639	ENSGT00940000161517.D	ENSGT00950000183576	ENSGT00940000159201	ENSGT00390000014679.d.a	ENSGT00940000154644.jb.b.h	ENSGT00940000154800.h	ENSGT00390000014679.d.b	ENSGT00940000158298	ENSGT00940000176188
Channel catfish	MODERN SPECIES	22	tmem50a (ENSIPUG00000019986)	mgst3b (ENSIPUG00000019973)	eif2ak2 (ENSIPUG00000019933)	rsrp1 (ENSIPUG00000019929)	syf2 (ENSIPUG00000019859)	ENSIPUG00000019854	runx3 (ENSIPUG00000019842)	chp1 (ENSIPUG00000019777)	khdrbs1a (ENSIPUG00000019749)	ENSIPUG00000019743	zbtb8os (ENSIPUG00000019722)	ENSIPUG00000019706	ENSIPUG00000019698	ENSIPUG00000019691	vsir (ENSIPUG00000019682)	cdh23 (ENSIPUG00000019602) #22	SMOC2 (ENSIPUG00000019553)	eif3l (ENSIPUG00000019522)	dact2 (ENSIPUG00000019514)	ablim1a (ENSIPUG00000019434)	FAM160B1 (ENSIPUG00000019373)	zfyve21 (ENSIPUG00000019344)	ENSIPUG00000019337	LV1 (ENSIPUG00000019329)	ENSIPUG00000019325	mdga1 (ENSIPUG00000019210)	zfand3 (ENSIPUG00000019182)	Btbd9 (ENSIPUG00000019128)	ENSIPUG00000019114	glo1 (ENSIPUG00000019103)	flrt3 (ENSIPUG00000019079)
Characiphysae_b	ANCESTRAL SPECIES	67	ENSGT00950000182844.a.b	ENSGT00940000157715	ENSGT00940000165706	ENSGT00730000112145	ENSGT00390000017845	ENSGT00990000210926	ENSGT00940000156598.c.b	ENSGT00940000154629.B	ENSGT00940000155718.a	ENSGT00940000154641.B.a.d.b	ENSGT00940000154641.B.a.c	ENSGT00390000003245	ENSGT01100000263505.a.b	ENSGT00990000204198	ENSGT00940000163216	ENSGT00940000155245 #22	ENSGT00390000018436.a.b	ENSGT00390000000411	ENSGT00950000183181.A.a	ENSGT00950000182850.a.a.b	ENSGT00950000182936.a.b.a	ENSGT00940000159639	ENSGT00940000161517.D	ENSGT00950000183576	ENSGT00940000159201	ENSGT00390000014679.d.a	ENSGT00940000154800.h	ENSGT00390000014679.d.b	ENSGT00940000158298	ENSGT00390000009312.a	ENSGT00390000002768.b
Characoidei	ANCESTRAL SPECIES	86	ENSGT01060000248724	ENSGT00940000157118.c.a	ENSGT00390000016613.c.e.a	ENSGT00950000182844.a.b	ENSGT00940000157715	ENSGT00940000165706	ENSGT00730000112145	ENSGT00390000017845	ENSGT00940000156598.c.b	ENSGT00940000154629.B	ENSGT00940000155718.a	ENSGT00940000154641.B.a.d.b	ENSGT00390000003245	ENSGT00990000204198	ENSGT00940000163216	ENSGT00940000155245 #22	ENSGT00390000018436.a.b	ENSGT00390000000411	ENSGT00950000183181.A.a	ENSGT00950000182850.a.a.b	ENSGT00950000182936.a.b.a	ENSGT00940000159639	ENSGT00940000161517.D	ENSGT00950000183576.f	ENSGT00940000159201	ENSGT00390000014679.d.a	ENSGT00940000158298	ENSGT00390000009312.a	ENSGT00390000002768.b	ENSGT00940000176188	ENSGT00940000159704
Red-bellied piranha	MODERN SPECIES	38	ENSPNAG00000015356	ldlrap1b (ENSPNAG00000015425)	maco1b (ENSPNAG00000015469)	rhd (ENSPNAG00000015477)	tmem50a (ENSPNAG00000015505)	mgst3b (ENSPNAG00000015528)	ENSPNAG00000006845	syf2 (ENSPNAG00000015570)	runx3 (ENSPNAG00000015589)	chp1 (ENSPNAG00000015615)	khdrbs1a (ENSPNAG00000015629)	ENSPNAG00000015643	zbtb8os (ENSPNAG00000015684)	ENSPNAG00000015704	vsir (ENSPNAG00000015717)	cdh23 (ENSPNAG00000015915) #22	SMOC2 (ENSPNAG00000015923)	eif3s6ip (ENSPNAG00000015976)	dact2 (ENSPNAG00000015982)	ablim1a (ENSPNAG00000016239)	fhip2a (ENSPNAG00000016354)	zfyve21 (ENSPNAG00000016417)	ENSPNAG00000016422	ENSPNAG00000016433	MDGA1 (ENSPNAG00000003422)	zfand3 (ENSPNAG00000016549)	btbd9 (ENSPNAG00000016621)	glo1 (ENSPNAG00000016646)	ENSPNAG00000016671	EPHX1 (ENSPNAG00000016713)	ENSPNAG00000016725
Mexicana tetra	MODERN SPECIES	17	esr2b (ENSAMXG00000008365)	ENSAMXG00000039303	ENSAMXG00000032135	gphb5 (ENSAMXG00000036535)	KCNH5 (ENSAMXG00000008484)	ppp2r5eb (ENSAMXG00000040910)	wdr89 (ENSAMXG00000033605)	SGPP1 (ENSAMXG00000008555)	SYT16 (ENSAMXG00000034806)	snapc1b (ENSAMXG00000042186)	ENSAMXG00000043860	ENSAMXG00000008608	marcksl1a (ENSAMXG00000029036)	ENSAMXG00000039507	bsdc1 (ENSAMXG00000039675)	cdh23 (ENSAMXG00000002906) #22	ENSAMXG00000033271	vsir (ENSAMXG00000036342)	SMOC2 (ENSAMXG00000043024)	eif3s6ip (ENSAMXG00000003073)	dact2 (ENSAMXG00000003133)	ablim1a (ENSAMXG00000003164)	fhip2a (ENSAMXG00000003213)	zfyve21 (ENSAMXG00000033590)	ENSAMXG00000038512	MDGA1 (ENSAMXG00000003278)	ENSAMXG00000036138	olig4 (ENSAMXG00000008630)	FNDC5 (ENSAMXG00000008645)	ENSAMXG00000036709	ENSAMXG00000008669
Electric eel	MODERN SPECIES	639														ENSEEEG00000018734	ENSEEEG00000018733	cdh23 (ENSEEEG00000018731) #22	ENSEEEG00000018728	SMOC2 (ENSEEEG00000018726)	eif3s6ip (ENSEEEG00000018704)	dact2 (ENSEEEG00000018695)	ENSEEEG00000018694	ablim1a (ENSEEEG00000018686)	fhip2a (ENSEEEG00000018658)	zfyve21 (ENSEEEG00000018657)	SH2D4B (ENSEEEG00000018656)
Cyprinoidei	ANCESTRAL SPECIES	26									ENSGT00800000124177	ENSGT00530000063564.a	ENSGT00390000001121	ENSGT00940000158672.c	ENSGT00940000154784.D.a.a.b.a.b	ENSGT00940000155509.a	ENSGT00940000163216	ENSGT00940000155245 #22	ENSGT00990000204198	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00950000182850.a.a.b	ENSGT00950000182936.a.b.a	ENSGT00940000159639	ENSGT00940000159201	ENSGT00390000014679.d.a	ENSGT00940000158298	ENSGT00390000009312.a	ENSGT01100000263505.a	ENSGT00390000003245	ENSGT00940000154641.B.a.c	ENSGT00940000155718.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	4	ENSGT00950000183037.B.a.n	ENSGT00950000182992.a.b.a.a.c	ENSGT00940000157736.q	ENSGT01100000263502.A.a.b.d	ENSGT00390000000747.i	ENSGT00940000155780.f	ENSGT00390000009948.c.d	ENSGT00940000158949.c	ENSGT00940000157500.d	ENSGT00940000158284	ENSGT00940000159342.b.b	ENSGT00800000124177.l	ENSGT00530000063564.a.m	ENSGT00940000158672.c.f	ENSGT00940000154784.D.a.a.b.a.b.b	ENSGT00940000155245.c #22	ENSGT00990000204198.b	ENSGT00940000163216.a	ENSGT00390000000411.hb.b	ENSGT00390000018436.a.b.n	ENSGT00950000183181.A.a.a	ENSGT00950000182850.a.a.b.i.a	ENSGT00950000182936.a.b.a.h	ENSGT00940000159639.b	ENSGT00940000159201.e	ENSGT00390000014679.d.a.a	ENSGT00940000158298.k.b	ENSGT00390000009312.a.c	ENSGT01100000263505.a	ENSGT00390000003245.x	ENSGT00940000154641.B.a.c.b
Goldfish	MODERN SPECIES	909			ide (ENSCARG00000052439)	marchf5 (ENSCARG00000052280)	cpeb3 (ENSCARG00000052184)	BTAF1 (ENSCARG00000051409)	ENSCARG00000051234	ENSCARG00000051215	mlh1 (ENSCARG00000050983)	lrrfip2 (ENSCARG00000050501)	mrpl14 (ENSCARG00000050455)	capn1a (ENSCARG00000048995)	capn2a (ENSCARG00000043982)	ENSCARG00000043743	vsir (ENSCARG00000043735)	cdh23 (ENSCARG00000038287) #22	eif3s6ip (ENSCARG00000038061)
Cyprininae_a	ANCESTRAL SPECIES	202	ENSGT00950000183037.B.a.n	ENSGT00950000182992.a.b.a.a.c	ENSGT00940000157736.q	ENSGT01100000263502.A.a.b.d	ENSGT00390000000747.i	ENSGT00940000155780.f	ENSGT00390000009948.c.d	ENSGT00940000158949.c	ENSGT00940000157500.d	ENSGT00940000158284	ENSGT00940000159342.b.b	ENSGT00800000124177.l	ENSGT00530000063564.a.m	ENSGT00940000158672.c.f	ENSGT00940000154784.D.a.a.b.a.b.b	ENSGT00940000155245.c #22	ENSGT00990000204198.b	ENSGT00940000163216.a
Common carp reference	MODERN SPECIES	48	ENSCCRG00000039079	cdc42ep3 (ENSCCRG00000054556)	opn3 (ENSCCRG00000033159)	kmo (ENSCCRG00000012677)	ide (ENSCCRG00000012699)	marchf5 (ENSCCRG00000012963)	cpeb3 (ENSCCRG00000012966)	BTAF1 (ENSCCRG00000017168)	ENSCCRG00000052871	ENSCCRG00000055750	mlh1 (ENSCCRG00000025417)	lrrfip2 (ENSCCRG00000025633)	mrpl14 (ENSCCRG00000026068)	capn1a (ENSCCRG00000034514)	capn2a (ENSCCRG00000028197)	cdh23 (ENSCCRG00000067999) #22	ENSCCRG00000025386	vsir (ENSCCRG00000064002)	eif3s6ip (ENSCCRG00000067933)	ENSCCRG00000018539	dact2 (ENSCCRG00000025402)	ablim1a (ENSCCRG00000020129)	fhip2a (ENSCCRG00000047674)	zfyve21 (ENSCCRG00000067706)	ENSCCRG00000070933	zfand3 (ENSCCRG00000082506)	btbd9 (ENSCCRG00000042666)	glo1 (ENSCCRG00000064219)	si:dkeyp-2e4.6 (ENSCCRG00000049586)	zbtb8os (ENSCCRG00000074760)	ENSCCRG00000033111
Golden-line barbel	MODERN SPECIES	362	ENSSGRG00000032301	cdc42ep3 (ENSSGRG00000032300)	opn3 (ENSSGRG00000032299)	kmo (ENSSGRG00000032293)	ide (ENSSGRG00000032017)	marchf5 (ENSSGRG00000031992)	cpeb3 (ENSSGRG00000031987)	ENSSGRG00000030877	ENSSGRG00000030846	ENSSGRG00000030845	mlh1 (ENSSGRG00000030322)	lrrfip2 (ENSSGRG00000030148)	mrpl14 (ENSSGRG00000030136)	capn2a (ENSSGRG00000029564)	vsir (ENSSGRG00000029530)	cdh23 (ENSSGRG00000029528) #22	eif3s6ip (ENSSGRG00000029507)	SMOC2 (ENSSGRG00000029503)	ENSSGRG00000029498
Cyprininae	ANCESTRAL SPECIES	166	ENSGT00950000183037.B.a.m	ENSGT00950000182992.a.b.a.a.d	ENSGT00940000157736.r	ENSGT01100000263502.A.a.b.c	ENSGT00390000000747.j	ENSGT00940000155780.e	ENSGT00390000009948.c.c	ENSGT00940000158949.d	ENSGT00940000157500.c	ENSGT00940000159342.b.a	ENSGT00800000124177.k	ENSGT00530000063564.a.n	ENSGT00390000001121	ENSGT00940000158672.c.e	ENSGT00940000154784.D.a.a.b.a.b.a	ENSGT00940000155245.d #22	ENSGT00990000204198.a	ENSGT00940000163216.b	ENSGT00390000000411.hb.a	ENSGT00390000018436.a.b.m	ENSGT00950000183181.A.a.b	ENSGT00950000182850.a.a.b.i.b	ENSGT00950000182936.a.b.a.g	ENSGT00940000159639.a	ENSGT00940000159201.f	ENSGT00390000014679.d.a.b	ENSGT00940000158298.k.a	ENSGT00390000009312.a.d	ENSGT00390000003245.w	ENSGT00940000154641.B.a.c.a	ENSGT00940000155718.a.b
Goldfish	MODERN SPECIES	4	cyp1b1 (ENSCARG00000027420)	ENSCARG00000027398	cdc42ep3 (ENSCARG00000027386)	opn3 (ENSCARG00000027367)	ide (ENSCARG00000026655)	marchf5 (ENSCARG00000026495)	cpeb3 (ENSCARG00000026413)	BTAF1 (ENSCARG00000026266)	ENSCARG00000026253	mlh1 (ENSCARG00000026247)	lrrfip2 (ENSCARG00000025933)	mrpl14 (ENSCARG00000025864)	capn1a (ENSCARG00000025658)	capn2a (ENSCARG00000024563)	vsir (ENSCARG00000024498)	cdh23 (ENSCARG00000021413) #22	eif3s6ip (ENSCARG00000020859)	SMOC2 (ENSCARG00000020807)	dact2 (ENSCARG00000020795)	ablim1a (ENSCARG00000020260)	ENSCARG00000020216	fhip2a (ENSCARG00000019575)	zfyve21 (ENSCARG00000019523)	MDGA1 (ENSCARG00000019162)	ENSCARG00000019133	LOXL4 (ENSCARG00000019129)	zgc:123010 (ENSCARG00000019115)	pyroxd2 (ENSCARG00000019047)	slc25a28 (ENSCARG00000019023)	nkx3.3 (ENSCARG00000019016)	nkx2.3 (ENSCARG00000019008)
Cyprininae_a	ANCESTRAL SPECIES	29	ENSGT00950000183037.B.a.m	ENSGT00950000182992.a.b.a.a.d	ENSGT00940000157736.r	ENSGT01100000263502.A.a.b.c	ENSGT00390000000747.j	ENSGT00940000155780.e	ENSGT00390000009948.c.c	ENSGT00940000158949.d	ENSGT00940000157500.c	ENSGT00940000159342.b.a	ENSGT00800000124177.k	ENSGT00530000063564.a.n	ENSGT00390000001121	ENSGT00940000158672.c.e	ENSGT00940000154784.D.a.a.b.a.b.a	ENSGT00940000155245.d #22	ENSGT00990000204198.a	ENSGT00940000163216.b	ENSGT00390000000411.hb.a	ENSGT00390000018436.a.b.m	ENSGT00950000183181.A.a.b	ENSGT00950000182850.a.a.b.i.b	ENSGT00950000182936.a.b.a.g	ENSGT00940000159639.a	ENSGT00940000159201.f	ENSGT00390000014679.d.a.b	ENSGT00940000158298.k.a	ENSGT00390000009312.a.d	ENSGT00390000003245.w	ENSGT00940000154641.B.a.c.a	ENSGT00940000155718.a.b
Common carp reference	MODERN SPECIES	18	ENSCCRG00000065146	cyp1b1 (ENSCCRG00000062463)	cdc42ep3 (ENSCCRG00000043941)	opn3 (ENSCCRG00000074687)	ENSCCRG00000044324	ide (ENSCCRG00000044329)	marchf5 (ENSCCRG00000025030)	cpeb3 (ENSCCRG00000065376)	BTAF1 (ENSCCRG00000004981)	ENSCCRG00000066392	mlh1 (ENSCCRG00000005891)	lrrfip2 (ENSCCRG00000005954)	mrpl14 (ENSCCRG00000006091)	capn1a (ENSCCRG00000026111)	capn2a (ENSCCRG00000038625)	cdh23 (ENSCCRG00000020681) #22	ENSCCRG00000030554	vsir (ENSCCRG00000066979)	eif3s6ip (ENSCCRG00000018602)	ENSCCRG00000080821	dact2 (ENSCCRG00000003324)	ablim1a (ENSCCRG00000063425)	fhip2a (ENSCCRG00000051002)	zfyve21 (ENSCCRG00000074251)	ENSCCRG00000006940	ENSCCRG00000082586	zfand3 (ENSCCRG00000011124)	btbd9 (ENSCCRG00000049643)	glo1 (ENSCCRG00000076928)	ENSCCRG00000027438	zbtb8os (ENSCCRG00000078237)
Golden-line barbel	MODERN SPECIES	1250																cdh23 (ENSSGRG00000021700) #22	ENSSGRG00000021704	vsir (ENSSGRG00000021705)	eif3s6ip (ENSSGRG00000021706)	ENSSGRG00000021707	dact2 (ENSSGRG00000021708)	ablim1a (ENSSGRG00000021710)
Zebrafish	MODERN SPECIES	4	opn3 (ENSDARG00000052775)	kmo (ENSDARG00000009160)	ide (ENSDARG00000075570)	marchf5 (ENSDARG00000032552)	cpeb3 (ENSDARG00000060103)	BTAF1 (ENSDARG00000060089)	si:dkey-221j11.3 (ENSDARG00000093304)	ENSDARG00000086114	ENSDARG00000068849	mlh1 (ENSDARG00000025948)	lrrfip2 (ENSDARG00000010400)	mrpl14 (ENSDARG00000068886)	capn1a (ENSDARG00000052702)	capn2a (ENSDARG00000091699)	ENSDARG00000094454	cdh23 (ENSDARG00000007561) #22	ENSDARG00000102792	vsir (ENSDARG00000068784)	eif3s6ip (ENSDARG00000101082)	SMOC2 (ENSDARG00000088157)	dact2 (ENSDARG00000056986)	ablim1a (ENSDARG00000060149)	fhip2a (ENSDARG00000060168)	zfyve21 (ENSDARG00000027887)	ENSDARG00000102813	MDGA1 (ENSDARG00000074376)	ENSDARG00000102188	zfand3 (ENSDARG00000052833)	btbd9 (ENSDARG00000068983)	glo1 (ENSDARG00000068978)	ENSDARG00000005010
Euteleosteomorpha	ANCESTRAL SPECIES	295							ENSGT00940000167706	ENSGT00500000044903.a	ENSGT00940000163322.a.b.b	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288	ENSGT00990000204198	ENSGT00940000163216	ENSGT00940000155245 #22	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a
Acanthomorphata	ANCESTRAL SPECIES	45									ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288	ENSGT00990000204198	ENSGT00940000163216	ENSGT00940000155245 #22	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00390000010763	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000180268	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000159406	ENSGT00390000000403	ENSGT00940000153441.a.b
Euacanthomorphacea	ANCESTRAL SPECIES	32									ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288	ENSGT00990000204198	ENSGT00940000163216	ENSGT00940000155245 #22	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000180268	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000159406	ENSGT00390000000403	ENSGT00940000179385	ENSGT00940000153441.a.b
Percomorphaceae	ANCESTRAL SPECIES	30									ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288	ENSGT00990000203760	ENSGT00940000163216	ENSGT00940000155245 #22	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000180268	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000159406	ENSGT00390000000403	ENSGT00940000179385	ENSGT00940000153441.a.b
Tiger tail seahorse	MODERN SPECIES	312	ENSHCOG00000020825	PTK7 (ENSHCOG00000020888)	srfb (ENSHCOG00000020929)	fhip2a (ENSHCOG00000020965)	ablim1a (ENSHCOG00000021029)	ENSHCOG00000021039	ENSHCOG00000021054	ENSHCOG00000021076	ALDH18A1 (ENSHCOG00000003625)	ATE1 (ENSHCOG00000003670)	fgfr2 (ENSHCOG00000003717)	wdr11 (ENSHCOG00000003786)	PLPP4 (ENSHCOG00000003820)	ENSHCOG00000003831	vsir (ENSHCOG00000003843)	cdh23 (ENSHCOG00000003974) #22	eif3s6ip (ENSHCOG00000004022)	SMOC2 (ENSHCOG00000004109)	dact2 (ENSHCOG00000004124)	lrrfip2 (ENSHCOG00000004180)	mlh1 (ENSHCOG00000004210)	ENSHCOG00000004219	ENSHCOG00000004259	HERC4 (ENSHCOG00000004276)	cox5b2 (ENSHCOG00000004450)	dnajc12 (ENSHCOG00000004474)	ENSHCOG00000000817	ENSHCOG00000004496	SIRT1 (ENSHCOG00000004534)	SIRT1 (ENSHCOG00000004547)	CACUL1 (ENSHCOG00000004559)
Percomorphaceae_B	ANCESTRAL SPECIES	24									ENSGT00940000167706	ENSGT00980000198624	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288	ENSGT00940000155245 #22	ENSGT00990000203760	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000180268	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000157514.b	ENSGT00390000000403
Ovalentaria	ANCESTRAL SPECIES	18	ENSGT00950000183209.b.a.a	ENSGT00940000153244.A	ENSGT00940000164764	ENSGT00940000157908.g	ENSGT00400000022158.a	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b	ENSGT00940000165556.a.a	ENSGT00940000157814	ENSGT00980000198624	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288.l	ENSGT00940000155245 #22	ENSGT00990000203760	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000180268	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000159406	ENSGT00940000157514.b
Ovalentaria_B	ANCESTRAL SPECIES	25										ENSGT00980000198624	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288.l	ENSGT00940000155245 #22	ENSGT00990000203760	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000180268	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000157514.b	ENSGT00390000000403
Pomacentridae	ANCESTRAL SPECIES	9	ENSGT00390000003866.a.a.e	ENSGT00950000183209.b.a.a	ENSGT00940000153244.A	ENSGT00940000164764	ENSGT00940000157908.g	ENSGT00400000022158.a	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b	ENSGT00940000165556.a.a	ENSGT00980000198624	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288.l	ENSGT00940000155245 #22	ENSGT00990000203760	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000180268	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000159406	ENSGT00390000000403
Pomacentridae_A	ANCESTRAL SPECIES	7	ENSGT00390000003866.a.a.e	ENSGT00950000183209.b.a.a	ENSGT00940000153244.A	ENSGT00940000164764	ENSGT00940000157908.g	ENSGT00400000022158.a	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b	ENSGT00940000165556.a.a	ENSGT00980000198624	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288.l	ENSGT00940000155245 #22	ENSGT00990000203760	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000180268	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000159406	ENSGT00390000000403
Amphiprion	ANCESTRAL SPECIES	45	ENSGT00950000183209.b.a.a	ENSGT00940000153244.A	ENSGT00940000155356.d.b.b.b.a.c.a.a.a	ENSGT00940000164764	ENSGT00940000157908.g	ENSGT00400000022158.a	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b	ENSGT00940000165556.a.a	ENSGT00980000198624	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288.l	ENSGT00940000155245 #22	ENSGT00990000203760	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000180268	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000159406	ENSGT00390000000403
Clown anemonefish	MODERN SPECIES	1805													PLPP4 (ENSAOCG00000021458)	ENSAOCG00000021467	vsir (ENSAOCG00000021486)	cdh23 (ENSAOCG00000021678) #22	eif3s6ip (ENSAOCG00000021732)	ENSAOCG00000021759	SMOC2 (ENSAOCG00000021804)
Orange clownfish	MODERN SPECIES	12	ENSAPEG00000024385	ENSAPEG00000024390	PTK7 (ENSAPEG00000024407)	SRF (ENSAPEG00000024423)	fhip2a (ENSAPEG00000024432)	ablim1a (ENSAPEG00000024443)	ENSAPEG00000024475	ENSAPEG00000024479	ENSAPEG00000024488	ENSAPEG00000024490	ALDH18A1 (ENSAPEG00000024497)	ATE1 (ENSAPEG00000024510)	fgfr2 (ENSAPEG00000024530)	wdr11 (ENSAPEG00000024565)	PLPP4 (ENSAPEG00000024583)	cdh23 (ENSAPEG00000024593) #22	ENSAPEG00000024608	vsir (ENSAPEG00000024613)	eif3s6ip (ENSAPEG00000024616)	SMOC2 (ENSAPEG00000024621)	ENSAPEG00000024628	dact2 (ENSAPEG00000024630)	lrrfip2 (ENSAPEG00000024638)	mlh1 (ENSAPEG00000024659)	ENSAPEG00000024662	ENSAPEG00000024664	HERC4 (ENSAPEG00000024667)	cox5b2 (ENSAPEG00000024672)	dnajc12 (ENSAPEG00000024691)	SIRT1 (ENSAPEG00000024694)	dnajc12 (ENSAPEG00000024706)
Spiny chromis	MODERN SPECIES	760																cdh23 (ENSAPOG00000021008) #22	ENSAPOG00000020751	vsir (ENSAPOG00000020729)	ENSAPOG00000020720	eif3s6ip (ENSAPOG00000020695)	SMOC2 (ENSAPOG00000020626)	dact2 (ENSAPOG00000020578)	lrrfip2 (ENSAPOG00000020575)	mlh1 (ENSAPOG00000020464)	ENSAPOG00000000745
Bicolor damselfish	MODERN SPECIES	632																cdh23 (ENSSPAG00000021663) #22	ENSSPAG00000021742	vsir (ENSSPAG00000021751)	eif3s6ip (ENSSPAG00000021764)	SMOC2 (ENSSPAG00000021788)	dact2 (ENSSPAG00000021819)	lrrfip2 (ENSSPAG00000021836)	mlh1 (ENSSPAG00000021902)	ENSSPAG00000021937	ENSSPAG00000021939	HERC4 (ENSSPAG00000021949)	cox5b2 (ENSSPAG00000022001)
Cichlidae	ANCESTRAL SPECIES	13	ENSGT00940000153244.A	ENSGT00940000164764	ENSGT00940000157908.g	ENSGT00400000022158.a	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b	ENSGT00940000165556.a.a	ENSGT00940000157814	ENSGT00980000198624	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288.l	ENSGT00990000203760	ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000157514.b	ENSGT00390000000403	ENSGT00940000153441.a.b	ENSGT00940000161556
Pseudocrenilabrinae	ANCESTRAL SPECIES	16	ENSGT00950000183209.b.a.a	ENSGT00940000153244.A	ENSGT00940000164764	ENSGT00940000157908.g	ENSGT00400000022158.a	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b	ENSGT00940000165556.a.a	ENSGT00940000157814	ENSGT00980000198624	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288.l	ENSGT00940000155245 #22	ENSGT00990000203760	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000157514.b	ENSGT00390000000403	ENSGT00940000153441.a.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	11	ENSGT00940000153244.A	ENSGT00940000164764	ENSGT00940000157908.g	ENSGT00400000022158.a	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b	ENSGT00940000165556.a.a	ENSGT00940000157814	ENSGT00980000198624	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000180057	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288.l	ENSGT00940000155245 #22	ENSGT00990000203760	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000157514.b	ENSGT00390000000403	ENSGT00940000153441.a.b
Haplochromini	ANCESTRAL SPECIES	10	ENSGT00940000164764	ENSGT00940000157908.g	ENSGT00400000022158.a	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b	ENSGT00940000165556.a.a	ENSGT00940000157814	ENSGT00980000198624	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000180057	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288.l	ENSGT00990000203760	ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000157514.b	ENSGT00390000000403	ENSGT00940000153441.a.b	ENSGT00940000161556
Haplochromini_A	ANCESTRAL SPECIES	8	ENSGT00940000164764	ENSGT00940000157908.g	ENSGT00400000022158.a	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b	ENSGT00940000165556.a.a	ENSGT00940000157814	ENSGT00980000198624	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000180057	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288.l	ENSGT00990000203760	ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000157514.b	ENSGT00390000000403	ENSGT00940000153441.a.b	ENSGT00940000161556
Haplochromini_B	ANCESTRAL SPECIES	5	ENSGT00940000164764	ENSGT00940000157908.g	ENSGT00400000022158.a	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b	ENSGT00940000165556.a.a	ENSGT00940000157814	ENSGT00980000198624	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000180057	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288.l	ENSGT00990000203760	ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000157514.b	ENSGT00390000000403	ENSGT00940000153441.a.b	ENSGT00940000161556
Eastern happy	MODERN SPECIES	4	PTK7 (ENSACLG00000022507)	SRF (ENSACLG00000022442)	fhip2a (ENSACLG00000022393)	ablim1a (ENSACLG00000022334)	ENSACLG00000022320	ENSACLG00000022292	ENSACLG00000022266	ALDH18A1 (ENSACLG00000022182)	ENSACLG00000022148	ATE1 (ENSACLG00000022107)	fgfr2 (ENSACLG00000021960)	ENSACLG00000021947	wdr11 (ENSACLG00000021821)	PLPP4 (ENSACLG00000021757)	ENSACLG00000021746	ENSACLG00000021681 #22	vsir (ENSACLG00000021650)	eif3s6ip (ENSACLG00000021594)	SMOC2 (ENSACLG00000021551)	dact2 (ENSACLG00000021538)	lrrfip2 (ENSACLG00000021229)	mlh1 (ENSACLG00000021115)	ENSACLG00000021078	ENSACLG00000021054	ENSACLG00000021051	HERC4 (ENSACLG00000020999)	cox5b2 (ENSACLG00000020980)	dnajc12 (ENSACLG00000020909)	ENSACLG00000020896	ENSACLG00000020886	CACUL1 (ENSACLG00000020854)
Zebra mbuna	MODERN SPECIES	1095	klc4 (ENSMZEG00005010340)	PTK7 (ENSMZEG00005010378)	SRF (ENSMZEG00005010411)	fhip2a (ENSMZEG00005010437)	ablim1a (ENSMZEG00005010487)	ENSMZEG00005010601	ENSMZEG00005010604	ALDH18A1 (ENSMZEG00005010618)	ENSMZEG00005010649	ATE1 (ENSMZEG00005010664)	ENSMZEG00005010701	fgfr2 (ENSMZEG00005010727)	wdr11 (ENSMZEG00005010790)	ENSMZEG00005010831	PLPP4 (ENSMZEG00005010834)	ENSMZEG00005010887 #22	ENSMZEG00005010909	vsir (ENSMZEG00005010918)	eif3s6ip (ENSMZEG00005010929)	SMOC2 (ENSMZEG00005010946)	dact2 (ENSMZEG00005010958)	lrrfip2 (ENSMZEG00005010968)	mlh1 (ENSMZEG00005010989)	ENSMZEG00005011038	ENSMZEG00005011048	HERC4 (ENSMZEG00005011060)	ENSMZEG00005011097	cox5b2 (ENSMZEG00005011103)	dnajc12 (ENSMZEG00005011126)	ENSMZEG00005011173	CACUL1 (ENSMZEG00005011188)
P. nyererei	MODERN SPECIES	415	klc4 (ENSPNYG00000013326)	PTK7 (ENSPNYG00000013289)	SRF (ENSPNYG00000013265)	fhip2a (ENSPNYG00000013224)	ablim1a (ENSPNYG00000013070)	ENSPNYG00000013045	ENSPNYG00000013021	ENSPNYG00000013009	ALDH18A1 (ENSPNYG00000012952)	ENSPNYG00000012920	ATE1 (ENSPNYG00000012902)	fgfr2 (ENSPNYG00000012829)	wdr11 (ENSPNYG00000012728)	PLPP4 (ENSPNYG00000012644)	ENSPNYG00000012637	ENSPNYG00000012583 #22	vsir (ENSPNYG00000012563)	eif3s6ip (ENSPNYG00000012524)	SMOC2 (ENSPNYG00000012487)	dact2 (ENSPNYG00000012451)	lrrfip2 (ENSPNYG00000012284)	mlh1 (ENSPNYG00000012228)	ENSPNYG00000012210	ENSPNYG00000012198	cox5b2 (ENSPNYG00000012039)	HERC4 (ENSPNYG00000011915)
Burton s mouthbrooder	MODERN SPECIES	353	ENSHBUG00000009853	ENSHBUG00000009923	PTK7 (ENSHBUG00000010153)	SRF (ENSHBUG00000000263)	fhip2a (ENSHBUG00000010258)	ablim1a (ENSHBUG00000010322)	ENSHBUG00000010338	ENSHBUG00000010351	ENSHBUG00000010366	ALDH18A1 (ENSHBUG00000010457)	ATE1 (ENSHBUG00000010499)	fgfr2 (ENSHBUG00000010635)	wdr11 (ENSHBUG00000010793)	PLPP4 (ENSHBUG00000010815)	ENSHBUG00000010823	ENSHBUG00000010883 #22	vsir (ENSHBUG00000010891)	eif3s6ip (ENSHBUG00000010950)	SMOC2 (ENSHBUG00000010963)	dact2 (ENSHBUG00000010966)	lrrfip2 (ENSHBUG00000010983)	mlh1 (ENSHBUG00000011149)	ENSHBUG00000011170	ENSHBUG00000011184	HERC4 (ENSHBUG00000011286)	cox5b2 (ENSHBUG00000011191)	dnajc12 (ENSHBUG00000000305)	ENSHBUG00000011300	CACUL1 (ENSHBUG00000011313)	ENSHBUG00000011329	ENSHBUG00000011365
Lyretail cichlid	MODERN SPECIES	349	mrpl2 (ENSNBRG00000015282)	klc4 (ENSNBRG00000015305)	PTK7 (ENSNBRG00000015343)	SRF (ENSNBRG00000015394)	fhip2a (ENSNBRG00000015411)	ablim1a (ENSNBRG00000015486)	ENSNBRG00000015623	ENSNBRG00000015633	ALDH18A1 (ENSNBRG00000015657)	ENSNBRG00000015709	ATE1 (ENSNBRG00000015716)	ENSNBRG00000015748	fgfr2 (ENSNBRG00000015779)	wdr11 (ENSNBRG00000015870)	PLPP4 (ENSNBRG00000015965)	cdh23 (ENSNBRG00000016003) #22	ENSNBRG00000016127	vsir (ENSNBRG00000016136)	eif3s6ip (ENSNBRG00000016162)	SMOC2 (ENSNBRG00000016209)	ENSNBRG00000016241	dact2 (ENSNBRG00000016253)	lrrfip2 (ENSNBRG00000016274)	mlh1 (ENSNBRG00000016325)	ENSNBRG00000016501	ENSNBRG00000016521	HERC4 (ENSNBRG00000016555)	cox5b2 (ENSNBRG00000016611)	dnajc12 (ENSNBRG00000016658)	ENSNBRG00000016671	CACUL1 (ENSNBRG00000016702)
Nile tilapia	MODERN SPECIES	4	ENSONIG00000010142	ENSONIG00000010143	mrpl2 (ENSONIG00000010147)	ENSONIG00000010149	PTK7 (ENSONIG00000010156)	SRF (ENSONIG00000010161)	fhip2a (ENSONIG00000010163)	ablim1a (ENSONIG00000010167)	ENSONIG00000042358	ENSONIG00000010177	ALDH18A1 (ENSONIG00000010179)	ATE1 (ENSONIG00000010185)	fgfr2 (ENSONIG00000010192)	wdr11 (ENSONIG00000010215)	PLPP4 (ENSONIG00000034317)	cdh23 (ENSONIG00000010222) #22	ENSONIG00000039574	vsir (ENSONIG00000027925)	eif3s6ip (ENSONIG00000010235)	SMOC2 (ENSONIG00000010242)	dact2 (ENSONIG00000010246)	lrrfip2 (ENSONIG00000010248)	mlh1 (ENSONIG00000010251)	ENSONIG00000027716	ENSONIG00000041054	HERC4 (ENSONIG00000010256)	cox5b2 (ENSONIG00000010269)	dnajc12 (ENSONIG00000010270)	ENSONIG00000010273	CACUL1 (ENSONIG00000010275)	MYPN (ENSONIG00000010279)
Midas cichlid	MODERN SPECIES	354	ENSACIG00000005592	PTK7 (ENSACIG00000005558)	SRF (ENSACIG00000005434)	fhip2a (ENSACIG00000005278)	ablim1a (ENSACIG00000005032)	ENSACIG00000004970	ENSACIG00000004961	ALDH18A1 (ENSACIG00000004882)	ALDH18A1 (ENSACIG00000004839)	ATE1 (ENSACIG00000004752)	fgfr2 (ENSACIG00000004708)	wdr11 (ENSACIG00000004654)	PLPP4 (ENSACIG00000004624)	ENSACIG00000004613	vsir (ENSACIG00000004602)	cdh23 (ENSACIG00000004462) #22	eif3s6ip (ENSACIG00000004431)	SMOC2 (ENSACIG00000004407)	ENSACIG00000004397	dact2 (ENSACIG00000004370)	lrrfip2 (ENSACIG00000004319)	mlh1 (ENSACIG00000004268)	ENSACIG00000004226	HERC4 (ENSACIG00000004162)	cox5b2 (ENSACIG00000003989)	dnajc12 (ENSACIG00000003918)	ENSACIG00000003898	CACUL1 (ENSACIG00000003864)	MYPN (ENSACIG00000003806)	atoh7 (ENSACIG00000003792)	PKD2L1 (ENSACIG00000003762)
Atherinomorphae	ANCESTRAL SPECIES	16	ENSGT00950000183209.b.a.a	ENSGT00940000153244.A	ENSGT00940000164764	ENSGT00940000157908.g	ENSGT00400000022158.a	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b	ENSGT00940000165556.a.a	ENSGT00940000157814	ENSGT00980000198624	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288.l	ENSGT00940000155245 #22	ENSGT00990000204198	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000159406	ENSGT00390000000403	ENSGT00940000153441.a.b
Oryzias	ANCESTRAL SPECIES	6	ENSGT00950000183209.b.a.a	ENSGT00940000153244.A	ENSGT00940000164764	ENSGT00940000157908.g	ENSGT00400000022158.a	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b	ENSGT00940000165556.a.a	ENSGT00940000157814	ENSGT00980000198624	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288.l	ENSGT00940000155245 #22	ENSGT00990000204198	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000157514.b	ENSGT00390000000403	ENSGT00940000153441.a.b
Oryzias_a	ANCESTRAL SPECIES	4	ENSGT00950000183209.b.a.a	ENSGT00940000153244.A	ENSGT00940000164764	ENSGT00940000157908.g	ENSGT00400000022158.a	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b	ENSGT00940000165556.a.a	ENSGT00940000157814	ENSGT00980000198624	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288.l	ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000157514.b	ENSGT00390000000403	ENSGT00940000153441.a.b	ENSGT00940000161556
Japanese Medaka HdrR	MODERN SPECIES	6	PTK7 (ENSORLG00000013002)	srfb (ENSORLG00000013036)	fhip2a (ENSORLG00000013081)	ENSORLG00000026187	ablim1a (ENSORLG00000013106)	ENSORLG00000025345	ENSORLG00000013140	ENSORLG00000028775	ALDH18A1 (ENSORLG00000013192)	ATE1 (ENSORLG00000013220)	fgfr2 (ENSORLG00000013277)	ENSORLG00000027187	wdr11 (ENSORLG00000013317)	PLPP4 (ENSORLG00000013345)	ENSORLG00000013354	ENSORLG00000023886 #22	ENSORLG00000028874	ENSORLG00000022066	vsir (ENSORLG00000013443)	eif3s6ip (ENSORLG00000013480)	SMOC2 (ENSORLG00000013491)	dact2 (ENSORLG00000023445)	lrrfip2 (ENSORLG00000023564)	mlh1 (ENSORLG00000026320)	ENSORLG00000029445	ENSORLG00000013521	HERC4 (ENSORLG00000013638)	cox5b2 (ENSORLG00000013653)	dnajc12 (ENSORLG00000013658)	ENSORLG00000013667	CACUL1 (ENSORLG00000013671)
Chinese medaka	MODERN SPECIES	285	ENSOSIG00000017431	ENSOSIG00000017430	mrpl2 (ENSOSIG00000017428)	ENSOSIG00000017267	PTK7 (ENSOSIG00000016889)	srfb (ENSOSIG00000016848)	fhip2a (ENSOSIG00000016839)	ablim1a (ENSOSIG00000014126)	ENSOSIG00000014084	ENSOSIG00000014082	ALDH18A1 (ENSOSIG00000013450)	ATE1 (ENSOSIG00000012699)	fgfr2 (ENSOSIG00000007814)	wdr11 (ENSOSIG00000006381)	PLPP4 (ENSOSIG00000006358)	ENSOSIG00000006098 #22	vsir (ENSOSIG00000006094)	eif3s6ip (ENSOSIG00000006084)	SMOC2 (ENSOSIG00000006079)	dact2 (ENSOSIG00000006075)	lrrfip2 (ENSOSIG00000005899)	HERC4 (ENSOSIG00000005517)	cox5b2 (ENSOSIG00000005515)	dnajc12 (ENSOSIG00000005513)
Oryzias_b	ANCESTRAL SPECIES	7	ENSGT00950000183209.b.a.a	ENSGT00940000153244.A	ENSGT00940000164764	ENSGT00940000157908.g	ENSGT00400000022158.a	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b	ENSGT00940000165556.a.a	ENSGT00940000157814	ENSGT00980000198624	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288.l	ENSGT00940000155245 #22	ENSGT00990000204198	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000157514.b	ENSGT00390000000403	ENSGT00940000153441.a.b
Indian medaka	MODERN SPECIES	27	ENSOMEG00000018658	mrpl2 (ENSOMEG00000018515)	ENSOMEG00000018482	PTK7 (ENSOMEG00000018430)	srfb (ENSOMEG00000018350)	fhip2a (ENSOMEG00000018300)	ablim1a (ENSOMEG00000018255)	ENSOMEG00000018151	ENSOMEG00000018139	ALDH18A1 (ENSOMEG00000018101)	ENSOMEG00000018023	ATE1 (ENSOMEG00000018012)	fgfr2 (ENSOMEG00000017936)	wdr11 (ENSOMEG00000017794)	PLPP4 (ENSOMEG00000017734)	cdh23 (ENSOMEG00000017683) #22	ENSOMEG00000017596	vsir (ENSOMEG00000017587)	eif3s6ip (ENSOMEG00000017565)	SMOC2 (ENSOMEG00000017509)	dact2 (ENSOMEG00000017418)	lrrfip2 (ENSOMEG00000017368)	mlh1 (ENSOMEG00000017283)	ENSOMEG00000017183	ENSOMEG00000017166	ENSOMEG00000017157	cox5b2 (ENSOMEG00000017147)	dnajc12 (ENSOMEG00000017071)	ENSOMEG00000017041	CACUL1 (ENSOMEG00000017021)	ENSOMEG00000016990
Cyprinodontiformes	ANCESTRAL SPECIES	17	ENSGT00940000153244.A	ENSGT00940000164764	ENSGT00940000157908.g	ENSGT00400000022158.a	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b	ENSGT00940000165556.a.a	ENSGT00940000157814	ENSGT00980000198624	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288.l	ENSGT00990000203760	ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000159406	ENSGT00390000000403	ENSGT00940000153441.a.b	ENSGT00940000161556
Cyprinodontoidei	ANCESTRAL SPECIES	14														ENSGT00940000158288.l	ENSGT00990000203760	ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000161907	ENSGT00940000161552	ENSGT00940000156782.c	ENSGT00940000162844	ENSGT00940000175717
Poeciliinae	ANCESTRAL SPECIES	16															ENSGT00940000158288.l	ENSGT00940000155245 #22	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000174362.B	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000161907	ENSGT00940000161552	ENSGT00940000156782.c	ENSGT00940000162844
Poecilia	DUPLICATION
Poecilia	ANCESTRAL SPECIES	11															ENSGT00940000158288.l	ENSGT00940000155245.e #22	ENSGT00940000163216	ENSGT00940000155245.f #22	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000174362.B	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000161907	ENSGT00940000161552	ENSGT00940000156782.c
Guppy	MODERN SPECIES	445	ENSPREG00000000795	ANKRD1 (ENSPREG00000000817)	ENSPREG00000000830	HTR7 (ENSPREG00000000878)	ARFGEF3 (ENSPREG00000000905)	ENSPREG00000000934	ENSPREG00000000977	ENSPREG00000000991	ENSPREG00000000996	ENSPREG00000001017	ENSPREG00000001023	ENSPREG00000001045	ENSPREG00000001066	ENSPREG00000001079	PLPP4 (ENSPREG00000001099)	ENSPREG00000001143 #22	vsir (ENSPREG00000001244)	eif3s6ip (ENSPREG00000001257)	SMOC2 (ENSPREG00000001325)	dact2 (ENSPREG00000001353)	lrrfip2 (ENSPREG00000001389)	mlh1 (ENSPREG00000001484)	ENSPREG00000001508	ENSPREG00000001532	ENSPREG00000001546	HERC4 (ENSPREG00000001565)	cox5b2 (ENSPREG00000001646)	ttl (ENSPREG00000001688)	ikzf1 (ENSPREG00000001721)	ENSPREG00000001767	vwc2 (ENSPREG00000001778)
NAME_6	ANCESTRAL SPECIES	706															ENSGT00940000158288.l	ENSGT00940000155245.e #22
Sailfin molly	MODERN SPECIES	975															PLPP4 (ENSPLAG00000000957)	ENSPLAG00000000962 #22
Amazon molly	MODERN SPECIES	1163																cdh23 (ENSPFOG00000015022) #22
Poecilia	ANCESTRAL SPECIES	11													ENSGT00940000158288.l	ENSGT00940000155245.e #22	ENSGT00940000163216	ENSGT00940000155245.f #22	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000174362.B	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000161907	ENSGT00940000161552	ENSGT00940000156782.c	ENSGT00940000175717	ENSGT00720000108792.A
NAME_6	ANCESTRAL SPECIES	285														ENSGT00990000204198	ENSGT00940000163216	ENSGT00940000155245.f #22	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000174362.B	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000161907	ENSGT00940000161552	ENSGT00940000156782.c.a	ENSGT00940000175717
Amazon molly	MODERN SPECIES	762															vsir (ENSPFOG00000014699)	cdh23 (ENSPFOG00000013879) #22	eif3s6ip (ENSPFOG00000013709)	SMOC2 (ENSPFOG00000013603)	dact2 (ENSPFOG00000013579)	lrrfip2 (ENSPFOG00000013393)	mlh1 (ENSPFOG00000013317)	ENSPFOG00000013288	ENSPFOG00000013287	ENSPFOG00000023000	HERC4 (ENSPFOG00000013186)	cox5b2 (ENSPFOG00000013157)	ttl (ENSPFOG00000013119)	fignl1 (ENSPFOG00000020914)	ikzf1 (ENSPFOG00000013073)
Sailfin molly	MODERN SPECIES	532														ENSPLAG00000021091	vsir (ENSPLAG00000021101)	cdh23 (ENSPLAG00000021664) #22	eif3s6ip (ENSPLAG00000021721)	SMOC2 (ENSPLAG00000021787)	dact2 (ENSPLAG00000021794)	lrrfip2 (ENSPLAG00000021877)	mlh1 (ENSPLAG00000021958)	ENSPLAG00000022026	ENSPLAG00000022071	ENSPLAG00000022083	HERC4 (ENSPLAG00000000469)	cox5b2 (ENSPLAG00000022098)	ttl (ENSPLAG00000022128)	fignl1 (ENSPLAG00000022135)	ikzf1 (ENSPLAG00000022293)
Platyfish	MODERN SPECIES	14	ENSXMAG00000028863	ENSXMAG00000026696	ENSXMAG00000022272	ENSXMAG00000024538	ENSXMAG00000004947	ENSXMAG00000022677	ENSXMAG00000029940	ENSXMAG00000026100	ENSXMAG00000028232	ENSXMAG00000023138	ENSXMAG00000024205	ENSXMAG00000004951	ENSXMAG00000004826	PLPP4 (ENSXMAG00000004823)	vsir (ENSXMAG00000004819)	cdh23 (ENSXMAG00000004609) #22	eif3s6ip (ENSXMAG00000004578)	SMOC2 (ENSXMAG00000004572)	dact2 (ENSXMAG00000008191)	lrrfip2 (ENSXMAG00000008181)	mlh1 (ENSXMAG00000008156)	ENSXMAG00000026782	ENSXMAG00000025647	ENSXMAG00000008153	HERC4 (ENSXMAG00000008095)	cox5b2 (ENSXMAG00000025711)	ttl (ENSXMAG00000008085)	fignl1 (ENSXMAG00000019831)	ikzf1 (ENSXMAG00000024633)	ENSXMAG00000023437	vwc2 (ENSXMAG00000008075)
NAME_4	ANCESTRAL SPECIES	58																ENSGT00940000155245 #22	ENSGT00940000158288.l	ENSGT00990000203760	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000158924.h	ENSGT00390000011010.a.b	ENSGT00940000161907	ENSGT00940000161552	ENSGT00940000156782.c
Sheepshead minnow	MODERN SPECIES	804																cdh23 (ENSCVAG00000001279) #22	vsir (ENSCVAG00000000653)	eif3s6ip (ENSCVAG00000001269)	ENSCVAG00000001267	dact2 (ENSCVAG00000001263)
Mummichog	MODERN SPECIES	286													PLPP4 (ENSFHEG00000018925)	ENSFHEG00000018935	vsir (ENSFHEG00000018940)	cdh23 (ENSFHEG00000019095) #22	eif3s6ip (ENSFHEG00000019137)	SMOC2 (ENSFHEG00000019241)	dact2 (ENSFHEG00000019260)	lrrfip2 (ENSFHEG00000019301)	mlh1 (ENSFHEG00000019350)	ENSFHEG00000019359	ENSFHEG00000019372	ENSFHEG00000019396	ENSFHEG00000019404
Aplocheiloidei	DUPLICATION
Aplocheiloidei	ANCESTRAL SPECIES	28	ENSGT00940000164764	ENSGT00940000157908.g	ENSGT00400000022158.a	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b	ENSGT00940000165556.a.a	ENSGT00940000157814	ENSGT00980000198624	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288.l	ENSGT00940000155245.h #22	ENSGT00940000163216	ENSGT00940000155245.g #22	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000159406	ENSGT00390000000403	ENSGT00940000153441.a.b	ENSGT00940000161556	ENSGT00940000157274
Mangrove rivulus	MODERN SPECIES	77	mrpl2 (ENSKMAG00000010073)	klc4 (ENSKMAG00000010027)	PTK7 (ENSKMAG00000009940)	srfb (ENSKMAG00000009863)	fhip2a (ENSKMAG00000009783)	ablim1a (ENSKMAG00000009628)	ENSKMAG00000009562	ENSKMAG00000009541	ENSKMAG00000009524	ALDH18A1 (ENSKMAG00000009459)	ATE1 (ENSKMAG00000009409)	fgfr2 (ENSKMAG00000009249)	wdr11 (ENSKMAG00000009097)	PLPP4 (ENSKMAG00000009057)	vsir (ENSKMAG00000009047)	cdh23 (ENSKMAG00000008884) #22	eif3s6ip (ENSKMAG00000008795)	SMOC2 (ENSKMAG00000008724)	ENSKMAG00000008699	dact2 (ENSKMAG00000008689)	lrrfip2 (ENSKMAG00000008669)	mlh1 (ENSKMAG00000008640)	ENSKMAG00000008619	ENSKMAG00000008588	HERC4 (ENSKMAG00000008479)	cox5b2 (ENSKMAG00000008439)	dnajc12 (ENSKMAG00000008425)	SIRT1 (ENSKMAG00000008393)	CACUL1 (ENSKMAG00000008378)	MYPN (ENSKMAG00000008332)	atoh7 (ENSKMAG00000008306)
Turquoise killifish	MODERN SPECIES	1624	L3MBTL1 (ENSNFUG00015023458)	srsf6a (ENSNFUG00015014022)	eif2s2 (ENSNFUG00015014032)	CHMP4B (ENSNFUG00015014046)	VAPB (ENSNFUG00015014066)	ENSNFUG00015014082	GNAS (ENSNFUG00015014154)	ENSNFUG00015014517	ENSNFUG00015014571	atp5f1e (ENSNFUG00015015705)	SLMO2 (ENSNFUG00015015723)	ENSNFUG00015015756	SLC32A1 (ENSNFUG00015015780)	actr5 (ENSNFUG00015015793)	ENSNFUG00015015880	cdh23 (ENSNFUG00015015894) #22	EIF3S6IP (ENSNFUG00015015988)	SMOC2 (ENSNFUG00015016178)	stac3 (ENSNFUG00015016199)	kif5aa (ENSNFUG00015016470)	ENSNFUG00015022316	KLHL10 (ENSNFUG00015022356)	RPRD1B (ENSNFUG00015022378)	tas1r1 (ENSNFUG00015022388)	HER12 (ENSNFUG00015022400)	her4.1 (ENSNFUG00015022403)	UBR4 (ENSNFUG00015022509)	EMC1 (ENSNFUG00015023731)	ERRFI1 (ENSNFUG00015023783)	OLA.11843 (ENSNFUG00015023785)	PPIH (ENSNFUG00015023794)
Aplocheiloidei	ANCESTRAL SPECIES	28	ENSGT00950000183209.b.a.a	ENSGT00940000153244.A	ENSGT00940000164764	ENSGT00940000157908.g	ENSGT00400000022158.a	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b	ENSGT00940000165556.a.a	ENSGT00940000157814	ENSGT00980000198624	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288.l	ENSGT00940000155245.h #22	ENSGT00940000163216	ENSGT00940000155245.g #22	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000159406	ENSGT00390000000403	ENSGT00940000153441.a.b
Turquoise killifish	MODERN SPECIES	1612	PTK7 (ENSNFUG00015012238)	srfb (ENSNFUG00015013253)	FAM160B1 (ENSNFUG00015013265)	ablim1a (ENSNFUG00015013327)	ENSNFUG00015013868	HABP2 (ENSNFUG00015013911)	ENSNFUG00015013924	ALDH18A1 (ENSNFUG00015014012)	ENSNFUG00015016723	ENSNFUG00015016724	FGFR2 (ENSNFUG00015017390)	ENSNFUG00015024906	ENSNFUG00015024907	ENSNFUG00015024910	PLPP4 (ENSNFUG00015024912)	CDH23 (ENSNFUG00015024921) #22	ENSNFUG00015024927	dact2 (ENSNFUG00015024929)	LRRFIP2 (ENSNFUG00015024941)	MLH1 (ENSNFUG00015025016)	ENSNFUG00015025034	ENSNFUG00015025035	HERC4 (ENSNFUG00015025038)	cox5b2 (ENSNFUG00015025039)	mcmbp (ENSNFUG00015025043)	INPP5F (ENSNFUG00015025063)	BAG3 (ENSNFUG00015025118)	tial1 (ENSNFUG00015025125)	atoh7 (ENSNFUG00015025131)	MYPN (ENSNFUG00015025133)	CACUL1 (ENSNFUG00015025137)
Percomorphaceae_C	ANCESTRAL SPECIES	18	ENSGT00940000153244.A	ENSGT00940000164764	ENSGT00940000157908.g	ENSGT00400000022158.a	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b	ENSGT00940000165556.a.a	ENSGT00940000157814	ENSGT00940000167706	ENSGT00980000198624	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288	ENSGT00940000155245 #22	ENSGT00990000203760	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000157514.b	ENSGT00390000000403	ENSGT00940000153441.a.b
Eupercaria	ANCESTRAL SPECIES	15	ENSGT00940000153244.A	ENSGT00940000164764	ENSGT00940000157908.g	ENSGT00400000022158.a	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b	ENSGT00940000165556.a.a	ENSGT00940000157814	ENSGT00940000167706	ENSGT00980000198624	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288	ENSGT00940000155245 #22	ENSGT00990000203760	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000157514.b	ENSGT00390000000403	ENSGT00940000153441.a.b
Tetraodontidae	ANCESTRAL SPECIES	7	ENSGT00530000064165.b	ENSGT00390000003866.a.a.e	ENSGT00950000183209.b.a.a	ENSGT00940000153244.A	ENSGT00940000164764	ENSGT00940000157908.g	ENSGT00400000022158.a	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b	ENSGT00940000157814	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288	ENSGT00940000155245 #22	ENSGT00990000203760	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b.p	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000159406	ENSGT00390000000403	ENSGT00940000153441.a.b
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	9	ENSTNIG00000013425	mrpl2 (ENSTNIG00000013424)	ENSTNIG00000013423	ENSTNIG00000013422	PTK7 (ENSTNIG00000013421)	srfb (ENSTNIG00000013420)	fhip2a (ENSTNIG00000013419)	ablim1a (ENSTNIG00000013418)	ENSTNIG00000013417	ALDH18A1 (ENSTNIG00000013416)	ATE1 (ENSTNIG00000001496)	fgfr2 (ENSTNIG00000013415)	wdr11 (ENSTNIG00000003308)	ENSTNIG00000013109	PLPP4 (ENSTNIG00000013108)	ENSTNIG00000013107 #22	cdh23 (ENSTNIG00000013106) #22	eif3s6ip (ENSTNIG00000013105)	SMOC2 (ENSTNIG00000013104)	dact2 (ENSTNIG00000013103)	lrrfip2 (ENSTNIG00000013102)	mlh1 (ENSTNIG00000013101)	ENSTNIG00000013100	ENSTNIG00000013099	HERC4 (ENSTNIG00000013098)	cox5b2 (ENSTNIG00000013097)	dnajc12 (ENSTNIG00000013096)	ENSTNIG00000013095	CACUL1 (ENSTNIG00000001529)	MYPN (ENSTNIG00000013094)	atoh7 (ENSTNIG00000013093)
Tetraodon	MODERN SPECIES	9	mrpl2 (ENSTNIG00000013424)	ENSTNIG00000013423	ENSTNIG00000013422	PTK7 (ENSTNIG00000013421)	srfb (ENSTNIG00000013420)	fhip2a (ENSTNIG00000013419)	ablim1a (ENSTNIG00000013418)	ENSTNIG00000013417	ALDH18A1 (ENSTNIG00000013416)	ATE1 (ENSTNIG00000001496)	fgfr2 (ENSTNIG00000013415)	wdr11 (ENSTNIG00000003308)	ENSTNIG00000013109	PLPP4 (ENSTNIG00000013108)	ENSTNIG00000013107 #22	cdh23 (ENSTNIG00000013106) #22	eif3s6ip (ENSTNIG00000013105)	SMOC2 (ENSTNIG00000013104)	dact2 (ENSTNIG00000013103)	lrrfip2 (ENSTNIG00000013102)	mlh1 (ENSTNIG00000013101)	ENSTNIG00000013100	ENSTNIG00000013099	HERC4 (ENSTNIG00000013098)	cox5b2 (ENSTNIG00000013097)	dnajc12 (ENSTNIG00000013096)	ENSTNIG00000013095	CACUL1 (ENSTNIG00000001529)	MYPN (ENSTNIG00000013094)	atoh7 (ENSTNIG00000013093)	PKD2L1 (ENSTNIG00000013092)
Fugu	MODERN SPECIES	16	ENSTRUG00000032914	ENSTRUG00000030239	ablim1a (ENSTRUG00000017554)	ENSTRUG00000026644	ENSTRUG00000017574	ALDH18A1 (ENSTRUG00000017580)	ENSTRUG00000033215	ENSTRUG00000026746	ATE1 (ENSTRUG00000017594)	fgfr2 (ENSTRUG00000017610)	ENSTRUG00000026877	wdr11 (ENSTRUG00000017644)	ENSTRUG00000029049	PLPP4 (ENSTRUG00000017662)	ENSTRUG00000027017	ENSTRUG00000017669 #22	ENSTRUG00000022115	vsir (ENSTRUG00000032041)	eif3s6ip (ENSTRUG00000017695)	SMOC2 (ENSTRUG00000017700)	dact2 (ENSTRUG00000021341)	lrrfip2 (ENSTRUG00000017714)	ENSTRUG00000024578	ENSTRUG00000023629	HERC4 (ENSTRUG00000017737)	cox5b2 (ENSTRUG00000029494)	ENSTRUG00000019701	ENSTRUG00000024247	ttl (ENSTRUG00000017772)	fignl1 (ENSTRUG00000017776)	ikzf1 (ENSTRUG00000020773)
Eupecaria_A	ANCESTRAL SPECIES	26									ENSGT00940000167706	ENSGT00980000198624	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288	ENSGT00940000155245 #22	ENSGT00990000203760	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000157514.b	ENSGT00390000000403	ENSGT00940000153441.a.b
Ballan wrasse	MODERN SPECIES	111			PTK7 (ENSLBEG00000011686)	srfb (ENSLBEG00000011750)	fhip2a (ENSLBEG00000011795)	ablim1a (ENSLBEG00000011873)	ENSLBEG00000011956	ENSLBEG00000011972	ENSLBEG00000011995	ALDH18A1 (ENSLBEG00000012065)	ENSLBEG00000012161	ATE1 (ENSLBEG00000012266)	fgfr2 (ENSLBEG00000012486)	wdr11 (ENSLBEG00000012636)	PLPP4 (ENSLBEG00000012726)	cdh23 (ENSLBEG00000012785) #22	ENSLBEG00000012939	vsir (ENSLBEG00000012971)	ENSLBEG00000013021	eif3s6ip (ENSLBEG00000013052)	SMOC2 (ENSLBEG00000013117)	dact2 (ENSLBEG00000013198)	lrrfip2 (ENSLBEG00000013227)	mlh1 (ENSLBEG00000013311)	ENSLBEG00000013410	ENSLBEG00000013456	HERC4 (ENSLBEG00000013511)	cox5b2 (ENSLBEG00000013597)	vps8 (ENSLBEG00000013713)	ENSLBEG00000014096	pcca (ENSLBEG00000014120)
Eupecaria_B	ANCESTRAL SPECIES	26										ENSGT00940000167706	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288	ENSGT00940000155245 #22	ENSGT00990000203760	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000157514.b	ENSGT00390000000403	ENSGT00940000153441.a.b
Eupecaria_C	ANCESTRAL SPECIES	28										ENSGT00940000167706	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288	ENSGT00940000155245 #22	ENSGT00990000203760	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000161907	ENSGT00940000161552	ENSGT00940000156782.c	ENSGT00940000175717
Gilthead seabream	MODERN SPECIES	6	ENSSAUG00010011868	mrpl2 (ENSSAUG00010011875)	ENSSAUG00010011925	PTK7 (ENSSAUG00010015223)	SRF (ENSSAUG00010017561)	fhip2a (ENSSAUG00010017565)	ablim1a (ENSSAUG00010017698)	ENSSAUG00010018040	ENSSAUG00010018041	ENSSAUG00010018043	ALDH18A1 (ENSSAUG00010018045)	ATE1 (ENSSAUG00010018068)	fgfr2 (ENSSAUG00010018345)	wdr11 (ENSSAUG00010019959)	PLPP4 (ENSSAUG00010019977)	cdh23 (ENSSAUG00010020020) #22	eif3s6ip (ENSSAUG00010020925)	ENSSAUG00010021076	vsir (ENSSAUG00010021077)	SMOC2 (ENSSAUG00010021084)	dact2 (ENSSAUG00010021093)	lrrfip2 (ENSSAUG00010021116)	mlh1 (ENSSAUG00010021341)	ENSSAUG00010021378	ENSSAUG00010021379	HERC4 (ENSSAUG00010021383)	COX5b1 (ENSSAUG00010021488)	ttl (ENSSAUG00010021491)	fignl1 (ENSSAUG00010021493)	ikzf1 (ENSSAUG00010021495)	ENSSAUG00010021514
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	32										ENSGT00940000167706	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288	ENSGT00940000155245 #22	ENSGT00990000203760	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000161907	ENSGT00940000161552	ENSGT00940000156782.c	ENSGT00940000175717
European seabass	MODERN SPECIES	1	ENSDLAG00005023773	ENSDLAG00005023392	ENSDLAG00005023344	ENSDLAG00005023293	ENSDLAG00005023254	ENSDLAG00005031757	ENSDLAG00005023267	ATE1 (ENSDLAG00005023212)	FGFR2 (ENSDLAG00005014660)	ENSDLAG00005029971	WDR11 (ENSDLAG00005012543)	ENSDLAG00005033216	PLPP4 (ENSDLAG00005032421)	ENSDLAG00005012495	vsir (ENSDLAG00005028472)	cdh23 (ENSDLAG00005010877) #22	eif3s6ip (ENSDLAG00005010701)	ENSDLAG00005010618	dact2 (ENSDLAG00005010609)	lrrfip2 (ENSDLAG00005010250)	mlh1 (ENSDLAG00005010104)	ENSDLAG00005010097	ENSDLAG00005010085	ENSDLAG00005030057	ENSDLAG00005009832	ENSDLAG00005009783	ttl (ENSDLAG00005009752)	fignl1 (ENSDLAG00005034773)	ikzf1 (ENSDLAG00005029019)	vwc2 (ENSDLAG00005009628)	zgc:110045 (ENSDLAG00005009609)
Large yellow croaker	MODERN SPECIES	2	ENSLCRG00005023537	mrpl2 (ENSLCRG00005023543)	ENSLCRG00005023544	ENSLCRG00005023546	PTK7 (ENSLCRG00005023609)	SRF (ENSLCRG00005023617)	fhip2a (ENSLCRG00005023619)	ablim1a (ENSLCRG00005023640)	ENSLCRG00005023671	ENSLCRG00005023673	ENSLCRG00005023674	ALDH18A1 (ENSLCRG00005023676)	fgfr2 (ENSLCRG00005023758)	wdr11 (ENSLCRG00005023833)	PLPP4 (ENSLCRG00005023834)	cdh23 (ENSLCRG00005023838) #22	ENSLCRG00005023841	vsir (ENSLCRG00005000113)	eif3s6ip (ENSLCRG00005000131)	SMOC2 (ENSLCRG00005000166)	dact2 (ENSLCRG00005000186)	lrrfip2 (ENSLCRG00005000234)	mlh1 (ENSLCRG00005000336)	ENSLCRG00005000361	ENSLCRG00005000364	HERC4 (ENSLCRG00005000386)	cox5b2 (ENSLCRG00005000411)	NID1 (ENSLCRG00005000454)	LYST (ENSLCRG00005003732)	GNG4 (ENSLCRG00005003795)	b3galnt2 (ENSLCRG00005003800)
Perciformes	ANCESTRAL SPECIES	17	ENSGT00940000153244.A	ENSGT00940000164764	ENSGT00940000157908.g	ENSGT00400000022158.a	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b	ENSGT00940000165556.a.a	ENSGT00940000157814	ENSGT01030000234583.a.b.b.f	ENSGT00940000167706	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288	ENSGT00940000155245 #22	ENSGT00990000203760	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000157514.b	ENSGT00390000000403	ENSGT00940000153441.a.b
Perciformes_a	ANCESTRAL SPECIES	16	ENSGT00390000003866.a.a.e	ENSGT00950000183209.b.a.a	ENSGT00940000153244.A	ENSGT00940000164764	ENSGT00940000157908.g	ENSGT00400000022158.a	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b	ENSGT00940000157814	ENSGT01030000234583.a.b.b.f	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288	ENSGT00940000155245 #22	ENSGT00990000203760	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000157514.b	ENSGT00390000000403	ENSGT00940000153441.a.b
Channel bull blenny	MODERN SPECIES	6	mrpl2 (ENSCGOG00000010646)	ENSCGOG00000006555	PTK7 (ENSCGOG00000005714)	SRF (ENSCGOG00000005675)	fhip2a (ENSCGOG00000005324)	ablim1a (ENSCGOG00000019152)	ENSCGOG00000019139	ENSCGOG00000019137	ALDH18A1 (ENSCGOG00000018824)	ATE1 (ENSCGOG00000018781)	fgfr2 (ENSCGOG00000013030)	wdr11 (ENSCGOG00000012726)	PLPP4 (ENSCGOG00000012723)	ENSCGOG00000012721	vsir (ENSCGOG00000012720)	cdh23 (ENSCGOG00000012416) #22	SMOC2 (ENSCGOG00000012391)	ENSCGOG00000012390	lrrfip2 (ENSCGOG00000011075)	mlh1 (ENSCGOG00000010656)	ENSCGOG00000010628	ENSCGOG00000010576	ENSCGOG00000010551	b3gat2 (ENSCGOG00000010539)	ttl (ENSCGOG00000010526)	fignl1 (ENSCGOG00000010491)	ikzf1 (ENSCGOG00000010414)	ENSCGOG00000010404	vwc2 (ENSCGOG00000010403)	zgc:110045 (ENSCGOG00000010396)	MOCOS (ENSCGOG00000010377)
Pike perch	MODERN SPECIES	62	ENSSLUG00000014387	ENSSLUG00000014395	ENSSLUG00000014435	mrpl2 (ENSSLUG00000014974)	ENSSLUG00000015025	PTK7 (ENSSLUG00000015872)	srfb (ENSSLUG00000017200)	fhip2a (ENSSLUG00000017235)	ablim1a (ENSSLUG00000017317)	ENSSLUG00000017345	ALDH18A1 (ENSSLUG00000017405)	ATE1 (ENSSLUG00000017716)	fgfr2 (ENSSLUG00000017997)	wdr11 (ENSSLUG00000023730)	PLPP4 (ENSSLUG00000023758)	cdh23 (ENSSLUG00000023777) #22	vsir (ENSSLUG00000023802)	eif3s6ip (ENSSLUG00000023815)	SMOC2 (ENSSLUG00000023850)	dact2 (ENSSLUG00000023869)	lrrfip2 (ENSSLUG00000023900)	mlh1 (ENSSLUG00000023958)	ENSSLUG00000023967	ENSSLUG00000023971	HERC4 (ENSSLUG00000023985)	ENSSLUG00000024048	cox5b2 (ENSSLUG00000024050)	ENSSLUG00000024061	dnajc12 (ENSSLUG00000024081)	ENSSLUG00000024082	CACUL1 (ENSSLUG00000024087)
Cottioidei	ANCESTRAL SPECIES	17	ENSGT00950000183209.b.a.a	ENSGT00940000153244.A	ENSGT00940000164764	ENSGT00940000157908.g	ENSGT00400000022158.a	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b	ENSGT00940000165556.a.a	ENSGT00940000157814	ENSGT00940000167706	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288	ENSGT00940000155245 #22	ENSGT00990000203760	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b
Lumpfish	MODERN SPECIES	6	ENSCLMG00005002453	ENSCLMG00005002454	ENSCLMG00005002473	mrpl2 (ENSCLMG00005003537)	ENSCLMG00005003602	PTK7 (ENSCLMG00005008643)	srfb (ENSCLMG00005008980)	fhip2a (ENSCLMG00005009016)	ablim1a (ENSCLMG00005009743)	ENSCLMG00005009746	ALDH18A1 (ENSCLMG00005009760)	ATE1 (ENSCLMG00005010773)	fgfr2 (ENSCLMG00005011396)	wdr11 (ENSCLMG00005021627)	PLPP4 (ENSCLMG00005021631)	cdh23 (ENSCLMG00005021640) #22	ENSCLMG00005021645	vsir (ENSCLMG00005021647)	eif3s6ip (ENSCLMG00005021658)	SMOC2 (ENSCLMG00005021800)	dact2 (ENSCLMG00005021801)	lrrfip2 (ENSCLMG00005021816)	mlh1 (ENSCLMG00005021832)	ENSCLMG00005021838	ENSCLMG00005021841	HERC4 (ENSCLMG00005021848)	cox5b2 (ENSCLMG00005021881)	ENSCLMG00005021882	STK32C (ENSCLMG00005021884)	LRRC27 (ENSCLMG00005021945)	PWWP2B (ENSCLMG00005021947)
Stickleback	MODERN SPECIES	6	inpp5f (ENSGACG00000003346)	bag3 (ENSGACG00000003360)	tial1 (ENSGACG00000003365)	PKD2L1 (ENSGACG00000003378)	atoh7 (ENSGACG00000003390)	MYPN (ENSGACG00000003393)	CACUL1 (ENSGACG00000003406)	ENSGACG00000003411	dnajc12 (ENSGACG00000003415)	ENSGACG00000003418	ALDH18A1 (ENSGACG00000003423)	ATE1 (ENSGACG00000003439)	fgfr2 (ENSGACG00000003443)	wdr11 (ENSGACG00000003447)	PLPP4 (ENSGACG00000003465)	cdh23 (ENSGACG00000003475) #22	vsir (ENSGACG00000003502)	eif3s6ip (ENSGACG00000003516)	SMOC2 (ENSGACG00000003595)	dact2 (ENSGACG00000003607)	lrrfip2 (ENSGACG00000003611)	mlh1 (ENSGACG00000003638)	ENSGACG00000003675	HERC4 (ENSGACG00000003677)	ENSGACG00000003705	ENSGACG00000003723	ablim1a (ENSGACG00000003725)	fhip2a (ENSGACG00000003758)	srfb (ENSGACG00000003778)	wbp1la (ENSGACG00000003782)	fbxw4 (ENSGACG00000003785)
Percomorphaceae_D	ANCESTRAL SPECIES	19	ENSGT00950000183209.b.a.a	ENSGT00940000153244.A	ENSGT00940000164764	ENSGT00940000157908.g	ENSGT00400000022158.a	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b	ENSGT00940000165556.a.a	ENSGT00940000157814	ENSGT00980000198624	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288	ENSGT00940000155245 #22	ENSGT00990000203760	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000157514.b	ENSGT00390000000403	ENSGT00940000153441.a.b
Carangaria	ANCESTRAL SPECIES	19	ENSGT00950000183209.b.a.a	ENSGT00940000153244.A	ENSGT00940000164764	ENSGT00940000157908.g	ENSGT00400000022158.a	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b	ENSGT00940000165556.a.a	ENSGT00940000157814	ENSGT00980000198624	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288	ENSGT00940000155245 #22	ENSGT00990000203760	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000159406	ENSGT00940000157514.b	ENSGT00390000000403
Carangaria_A	ANCESTRAL SPECIES	29	ENSGT00950000183209.b.a.a	ENSGT00940000153244.A	ENSGT00940000164764	ENSGT00940000157908.g	ENSGT00400000022158.a	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b	ENSGT00940000165556.a.a	ENSGT00940000157814	ENSGT00980000198624	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288	ENSGT00940000155245 #22	ENSGT00990000203760	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b.d	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b
Seriola	ANCESTRAL SPECIES	14	ENSGT00950000183209.b.a.a	ENSGT00940000153244.A	ENSGT00940000164764	ENSGT00940000157908.g	ENSGT00400000022158.a	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b	ENSGT00940000165556.a.a	ENSGT00940000157814	ENSGT00980000198624	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288	ENSGT00940000155245 #22	ENSGT00990000203760	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b.d	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00390000014606	ENSGT00730000111092	ENSGT00950000183079.B.j #32	ENSGT00940000157528 #34
Yellowtail amberjack	MODERN SPECIES	2884	srfb (ENSSLDG00000024234)	fhip2a (ENSSLDG00000024217)	ablim1a (ENSSLDG00000024045)	ENSSLDG00000024004	ENSSLDG00000023944	ENSSLDG00000023932	ALDH18A1 (ENSSLDG00000023890)	ATE1 (ENSSLDG00000023864)	ENSSLDG00000023858	ENSSLDG00000023854	fgfr2 (ENSSLDG00000023773)	wdr11 (ENSSLDG00000023725)	PLPP4 (ENSSLDG00000023712)	ENSSLDG00000023704	vsir (ENSSLDG00000023698)	cdh23 (ENSSLDG00000023636) #22	eif3s6ip (ENSSLDG00000023604)	SMOC2 (ENSSLDG00000023586)	dact2 (ENSSLDG00000023575)	lrrfip2 (ENSSLDG00000023448)	mlh1 (ENSSLDG00000023384)	ENSSLDG00000023360	ENSSLDG00000023346	HERC4 (ENSSLDG00000023275)	cox5b2 (ENSSLDG00000023336)	mrps6 (ENSSLDG00000023246)	nolc1 (ENSSLDG00000023220)	micu1 (ENSSLDG00000023202) #32	mcu (ENSSLDG00000023177) #34	OIT3 (ENSSLDG00000023161) #35	pla2g12b (ENSSLDG00000023151) #36
Greater amberjack	MODERN SPECIES	30	mrpl2 (ENSSDUG00000003727)	ENSSDUG00000003764	PTK7 (ENSSDUG00000003833)	srfb (ENSSDUG00000003940)	fhip2a (ENSSDUG00000003999)	ablim1a (ENSSDUG00000004065)	ENSSDUG00000004237	ENSSDUG00000004252	ALDH18A1 (ENSSDUG00000004298)	ENSSDUG00000004369	ATE1 (ENSSDUG00000004387)	ENSSDUG00000004431	fgfr2 (ENSSDUG00000004454)	wdr11 (ENSSDUG00000004513)	PLPP4 (ENSSDUG00000004579)	cdh23 (ENSSDUG00000004628) #22	ENSSDUG00000004776	ENSSDUG00000004790	vsir (ENSSDUG00000004796)	eif3s6ip (ENSSDUG00000004810)	SMOC2 (ENSSDUG00000004845)	dact2 (ENSSDUG00000004902)	lrrfip2 (ENSSDUG00000004919)	mlh1 (ENSSDUG00000004980)	ENSSDUG00000005051	ENSSDUG00000005063	HERC4 (ENSSDUG00000005080)	cox5b2 (ENSSDUG00000005145)	mrps6 (ENSSDUG00000005175)	ENSSDUG00000005190	micu1 (ENSSDUG00000005210) #32
Barramundi perch	MODERN SPECIES	360												wdr11 (ENSLCAG00010022808)	PLPP4 (ENSLCAG00010022800)	ENSLCAG00010022798	vsir (ENSLCAG00010022795)	cdh23 (ENSLCAG00010022755) #22	eif3s6ip (ENSLCAG00010022613)	SMOC2 (ENSLCAG00010022572)	dact2 (ENSLCAG00010022569)	lrrfip2 (ENSLCAG00010022549)	mlh1 (ENSLCAG00010022535)	ENSLCAG00010022533	ENSLCAG00010022532	ENSLCAG00010022528	HERC4 (ENSLCAG00010022491)	cox5b2 (ENSLCAG00010022477)
Pleuronectoidei	ANCESTRAL SPECIES	28	ENSGT00950000183209.b.a.a	ENSGT00940000153244.A	ENSGT00940000164764	ENSGT00940000157908.g	ENSGT00400000022158.a	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b	ENSGT00940000165556.a.a	ENSGT00940000157814	ENSGT00940000167706	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288	ENSGT00940000155245 #22	ENSGT00990000203760	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000159406	ENSGT00940000157514.b	ENSGT00390000000403
Tongue sole	MODERN SPECIES	6	hdx (ENSCSEG00000018099)	ENSCSEG00000018062	ENSCSEG00000018052	ENSCSEG00000018036	agtr2 (ENSCSEG00000018029)	SH2D1A (ENSCSEG00000018016)	TENM1 (ENSCSEG00000017985)	arhgef9b (ENSCSEG00000017892)	asb12b (ENSCSEG00000017888)	fgfr2 (ENSCSEG00000017754)	wdr11 (ENSCSEG00000017666)	PLPP4 (ENSCSEG00000017646)	FLOT1 (ENSCSEG00000017640)	ENSCSEG00000017636	vsir (ENSCSEG00000017616)	cdh23 (ENSCSEG00000017540) #22	eif3s6ip (ENSCSEG00000017526)	SMOC2 (ENSCSEG00000017494)	dact2 (ENSCSEG00000017478)	lrrfip2 (ENSCSEG00000017449)	mlh1 (ENSCSEG00000017430)	ENSCSEG00000017411	ENSCSEG00000017399	HERC4 (ENSCSEG00000017361)	cox5b2 (ENSCSEG00000017393)	dnajc12 (ENSCSEG00000017341)	SIRT1 (ENSCSEG00000017334)	MICU3 (ENSCSEG00000017287) ##32	fgf20b (ENSCSEG00000017275)	her11 (ENSCSEG00000017265)	her5 (ENSCSEG00000017258)
Turbot	MODERN SPECIES	6	MRPL2 (ENSSMAG00000011157)	ENSSMAG00000011171	PTK7 (ENSSMAG00000011233)	SRF (ENSSMAG00000011279)	ENSSMAG00000011342	ENSSMAG00000011393	ENSSMAG00000011530	ENSSMAG00000011537	ENSSMAG00000011564	ENSSMAG00000025530	ENSSMAG00000011572	ATE1 (ENSSMAG00000011607)	FGFR2 (ENSSMAG00000011669)	WDR11 (ENSSMAG00000011843)	PLPP4 (ENSSMAG00000011926)	cdh23 (ENSSMAG00000011939) #22	ENSSMAG00000012076	vsir (ENSSMAG00000012083)	EIF3L (ENSSMAG00000012105)	ENSSMAG00000012146	dact2 (ENSSMAG00000012170)	lrrfip2 (ENSSMAG00000012190)	mlh1 (ENSSMAG00000012372)	ENSSMAG00000012479	ENSSMAG00000012490	ENSSMAG00000012500	cox5b2 (ENSSMAG00000012569)	dnajc12 (ENSSMAG00000012576)	ENSSMAG00000012590	ENSSMAG00000012604	ENSSMAG00000012612
Anabantaria	ANCESTRAL SPECIES	17	ENSGT00390000003866.a.a.e	ENSGT00950000183209.b.a.a	ENSGT00940000153244.A	ENSGT00940000164764	ENSGT00940000157908.g	ENSGT00400000022158.a	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b	ENSGT00940000165556.a.a	ENSGT00940000157814	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288	ENSGT00940000155245 #22	ENSGT00990000203760	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000157514.b	ENSGT00390000000403	ENSGT00940000153441.a.b
Zig-zag eel	MODERN SPECIES	6	ENSMAMG00000016627	MRPL2 (ENSMAMG00000016610)	ENSMAMG00000016583	PTK7 (ENSMAMG00000016527)	SRF (ENSMAMG00000016497)	ENSMAMG00000016452	ENSMAMG00000016382	ENSMAMG00000016320	ENSMAMG00000016272	ATE1 (ENSMAMG00000016168)	FGFR2 (ENSMAMG00000015971)	WDR11 (ENSMAMG00000015913)	PLPP4 (ENSMAMG00000015878)	ENSMAMG00000015868	vsir (ENSMAMG00000015856)	cdh23 (ENSMAMG00000015750) #22	eif3s6ip (ENSMAMG00000015713)	ENSMAMG00000015675	dact2 (ENSMAMG00000015634)	lrrfip2 (ENSMAMG00000015529)	mlh1 (ENSMAMG00000015440)	ENSMAMG00000015417	ENSMAMG00000015405	ENSMAMG00000015319	ENSMAMG00000014549	ttl (ENSMAMG00000014493)	fignl1 (ENSMAMG00000014483)	ikzf1 (ENSMAMG00000027086)	ENSMAMG00000014425	vwc2 (ENSMAMG00000026396)	zgc:110045 (ENSMAMG00000014389)
Anabantoidei	ANCESTRAL SPECIES	17	ENSGT00390000003866.a.a.e	ENSGT00950000183209.b.a.a	ENSGT00940000153244.A	ENSGT00940000164764	ENSGT00940000157908.g	ENSGT00400000022158.a	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b	ENSGT00940000165556.a.a	ENSGT00940000157814	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288	ENSGT00940000155245 #22	ENSGT00990000203760	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00940000159342.b	ENSGT00940000158284	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000159378	ENSGT00940000157514.b	ENSGT00390000000403	ENSGT00940000153441.a.b
Climbing perch	MODERN SPECIES	6	MRPL2 (ENSATEG00000014293)	ENSATEG00000014260	PTK7 (ENSATEG00000014159)	SRF (ENSATEG00000014117)	ENSATEG00000014078	ENSATEG00000013971	ENSATEG00000013890	ENSATEG00000013819	ATE1 (ENSATEG00000013777)	FGFR2 (ENSATEG00000013574)	ENSATEG00000025215	WDR11 (ENSATEG00000013455)	PLPP4 (ENSATEG00000013387)	ENSATEG00000013365	vsir (ENSATEG00000013355)	cdh23 (ENSATEG00000013168) #22	eif3s6ip (ENSATEG00000013143)	ENSATEG00000013130	dact2 (ENSATEG00000013119)	lrrfip2 (ENSATEG00000013082)	ENSATEG00000012975	ENSATEG00000012948	ENSATEG00000012928	ENSATEG00000012525	cox5b2 (ENSATEG00000026818)	dnajc12 (ENSATEG00000012488)	ENSATEG00000012475	ENSATEG00000012453	ENSATEG00000012393	atoh7 (ENSATEG00000012384)	ENSATEG00000012330
Siamese fighting fish	MODERN SPECIES	6	ENSBSLG00000003570	ENSBSLG00000003393	mrpl2 (ENSBSLG00000003362)	ENSBSLG00000003228	PTK7 (ENSBSLG00000002684)	srfb (ENSBSLG00000020916)	fhip2a (ENSBSLG00000020912)	ablim1a (ENSBSLG00000020843)	ENSBSLG00000020832	ENSBSLG00000020827	ALDH18A1 (ENSBSLG00000020746)	ATE1 (ENSBSLG00000020716)	fgfr2 (ENSBSLG00000013787)	wdr11 (ENSBSLG00000012488)	PLPP4 (ENSBSLG00000012482)	ENSBSLG00000012253 #22	ENSBSLG00000012228	vsir (ENSBSLG00000012217)	eif3s6ip (ENSBSLG00000011905)	SMOC2 (ENSBSLG00000011674)	dact2 (ENSBSLG00000011354)	lrrfip2 (ENSBSLG00000011140)	mlh1 (ENSBSLG00000010981)	ENSBSLG00000010965	ENSBSLG00000010943	HERC4 (ENSBSLG00000010915)	cox5b2 (ENSBSLG00000010901)	ttl (ENSBSLG00000010860)	fignl1 (ENSBSLG00000010853)	ikzf1 (ENSBSLG00000010675)	ENSBSLG00000010575
Pinecone sodierfish	MODERN SPECIES	6	ENSMMDG00005024171	mrpl2 (ENSMMDG00005024172)	ENSMMDG00005024187	PTK7 (ENSMMDG00005024290)	SRF (ENSMMDG00005024312)	fhip2a (ENSMMDG00005024315)	ablim1a (ENSMMDG00005024323)	ENSMMDG00005024328	habp2 (ENSMMDG00005024335)	ALDH18A1 (ENSMMDG00005024345)	ATE1 (ENSMMDG00005007879)	fgfr2 (ENSMMDG00005007887)	ENSMMDG00005008117	wdr11 (ENSMMDG00005008130)	PLPP4 (ENSMMDG00005008144)	cdh23 (ENSMMDG00005008221) #22	ENSMMDG00005008234	vsir (ENSMMDG00005008235)	eif3s6ip (ENSMMDG00005008255)	SMOC2 (ENSMMDG00005008647)	dact2 (ENSMMDG00005008651)	lrrfip2 (ENSMMDG00005008661)	mlh1 (ENSMMDG00005008706)	ENSMMDG00005008745	ENSMMDG00005008746	HERC4 (ENSMMDG00005008761)	cox5b2 (ENSMMDG00005009124)	dnajc12 (ENSMMDG00005009126)	ENSMMDG00005009134	CACUL1 (ENSMMDG00005009253)	ENSMMDG00005009256
Cod	MODERN SPECIES	6	fuom (ENSGMOG00000001239)	fuom (ENSGMOG00000026636)	ENSGMOG00000005693	znf511 (ENSGMOG00000033064)	ENSGMOG00000016360	ENSGMOG00000016309	ENSGMOG00000034019	ENSGMOG00000014049	ENSGMOG00000016882	ENSGMOG00000033232	ATE1 (ENSGMOG00000016947)	ENSGMOG00000017814	PLPP4 (ENSGMOG00000006050)	ENSGMOG00000034001	vsir (ENSGMOG00000008710)	ENSGMOG00000008645 #22	eif3s6ip (ENSGMOG00000008725)	ENSGMOG00000008813	ENSGMOG00000008829	ENSGMOG00000008864	SRF (ENSGMOG00000032667)	PTK7 (ENSGMOG00000011589)	ENSGMOG00000018328	MRPL2 (ENSGMOG00000018345)	ENSGMOG00000018354	ENSGMOG00000020275	ENSGMOG00000025079	ENSGMOG00000028358	ENSGMOG00000018420	ENSGMOG00000024532	ntpcr (ENSGMOG00000018446)
Protacanthopterygii	ANCESTRAL SPECIES	107	ENSGT00390000014666.b	ENSGT00950000182937.A.a.p	ENSGT00940000164426.d	ENSGT00390000014320.c.b	ENSGT00940000157908.g	ENSGT00400000022158.a	ENSGT00950000182936.a.b.a	ENSGT00950000182850.a.a.b.e.b	ENSGT00940000165556.a.a	ENSGT00940000157814	ENSGT00500000044903.a	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288.i	ENSGT00940000155245 #22	ENSGT00990000204198	ENSGT00940000163216	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	846												ENSGT00940000164940.b.h	ENSGT00500000044926.h	ENSGT00940000155447.c	ENSGT00940000158288.j	ENSGT00940000155245.k #22	ENSGT00990000204198	ENSGT00390000000411.gb	ENSGT00940000159449.d
Salmoninae_a	ANCESTRAL SPECIES	86					ENSGT00940000165556.a.b	ENSGT00940000158235	ENSGT00950000182937.A.a.p	ENSGT00950000182850.a.a.b.e.a.b	ENSGT00940000165556.a.a.b	ENSGT00500000044903.a	ENSGT00940000163322.a.b.b	ENSGT00940000164940.b.h	ENSGT00500000044926.h	ENSGT00940000155447.c	ENSGT00940000158288.j	ENSGT00940000155245.k #22	ENSGT00990000204198	ENSGT00390000000411.gb	ENSGT00940000159449.d	ENSGT00940000156033.e.c	ENSGT01090000260051.b.a.a.b.b.g	ENSGT00940000155509.b.b	ENSGT00950000182850.a.a.a	ENSGT00390000015483	ENSGT00940000158766	ENSGT00720000108851	ENSGT00940000158754	ENSGT00940000153232.a.a	ENSGT00940000158418	ENSGT00950000183088.a.b.a	ENSGT00940000161586.d.d
Salmo	ANCESTRAL SPECIES	3	ENSGT00940000160595.a.b.d	ENSGT00440000037417.B.b.a	ENSGT00940000160569	ENSGT00940000158693.B	ENSGT00940000165556.a.b	ENSGT00940000158235	ENSGT00950000182937.A.a.p	ENSGT00950000182850.a.a.b.e.a.b	ENSGT00940000165556.a.a.b	ENSGT00500000044903.a	ENSGT00940000163322.a.b.b	ENSGT00940000164940.b.h	ENSGT00500000044926.h	ENSGT00940000155447.c	ENSGT00940000158288.j	ENSGT00940000155245.k #22	ENSGT00990000204198	ENSGT00390000000411.gb	ENSGT00940000159449.d	ENSGT00940000156033.e.c	ENSGT01090000260051.b.a.a.b.b.g	ENSGT00940000155509.b.b
Atlantic salmon	MODERN SPECIES	10	ENSSSAG00000109675	ENSSSAG00000104681	cpn1 (ENSSSAG00000047898)	ENSSSAG00000047997	ENSSSAG00000050829	ENSSSAG00000094706	p5cs (ENSSSAG00000052772)	ENSSSAG00000108170	ENSSSAG00000113496	ATE1 (ENSSSAG00000054208)	ENSSSAG00000119655	FGFR2 (ENSSSAG00000054894)	ENSSSAG00000087212	PLPP4 (ENSSSAG00000051711)	ENSSSAG00000043725	cdh23 (ENSSSAG00000077356) #22	ENSSSAG00000122274	ENSSSAG00000077451	if3ei (ENSSSAG00000077463)	ENSSSAG00000077493	msl2 (ENSSSAG00000077499)	ENSSSAG00000111879	ENSSSAG00000077511	ENSSSAG00000077515	ENSSSAG00000077589	ENSSSAG00000108490	ENSSSAG00000107371	ENSSSAG00000078463	ENSSSAG00000082411	ENSSSAG00000078490	ENSSSAG00000109282
River trout	MODERN SPECIES	11	irf3 (ENSSTUG00000012438)	trpm4b.2 (ENSSTUG00000012503)	ENSSTUG00000012744	ENSSTUG00000012747	cpn1 (ENSSTUG00000012757)	ENSSTUG00000012862	CHUK (ENSSTUG00000012890)	ablim1a (ENSSTUG00000013181)	ALDH18A1 (ENSSTUG00000013627)	ENSSTUG00000014140	ENSSTUG00000014144	ATE1 (ENSSTUG00000014147)	fgfr2 (ENSSTUG00000014734)	ENSSTUG00000026863	PLPP4 (ENSSTUG00000026869)	cdh23 (ENSSTUG00000027045) #22	ENSSTUG00000027471	eif3s6ip (ENSSTUG00000027509)	slc18a3a (ENSSTUG00000029630)	lrit1a (ENSSTUG00000029635)	rgra (ENSSTUG00000029647)
Oncorhynchus	ANCESTRAL SPECIES	131					ENSGT00940000165556.a.b	ENSGT00940000158235	ENSGT00950000182937.A.a.p	ENSGT00950000182850.a.a.b.e.a.b	ENSGT00950000182850.a.a.b.e.b.a	ENSGT00940000165556.a.a.b	ENSGT00500000044903.a	ENSGT00940000163322.a.b.b	ENSGT00500000044926.h	ENSGT00940000155447.c	ENSGT00940000158288.j	ENSGT00940000155245.k #22	ENSGT00390000000411.gb	ENSGT00940000159449.d	ENSGT00940000156033.e.c	ENSGT01090000260051.b.a.a.b.b.g
Rainbow trout	MODERN SPECIES	7	ENSOMYG00000017315	ENSOMYG00000018510	ENSOMYG00000018451	ENSOMYG00000018132	ENSOMYG00000017685	ENSOMYG00000017605	ENSOMYG00000016594	ENSOMYG00000016559	ENSOMYG00000016542	FGFR2 (ENSOMYG00000013467)	ENSOMYG00000013128	PLPP4 (ENSOMYG00000013121)	ENSOMYG00000013114	ENSOMYG00000073251	ENSOMYG00000013112	ENSOMYG00000012342 #22	ENSOMYG00000012274	ENSOMYG00000011686	ENSOMYG00000049718	ENSOMYG00000011646	ENSOMYG00000011640	ENSOMYG00000011628	ENSOMYG00000064183	trpm4b.2 (ENSOMYG00000011505)	ENSOMYG00000048550	ENSOMYG00000011453	ENSOMYG00000011448	ENSOMYG00000051678	ENSOMYG00000054784	ENSOMYG00000011439	ENSOMYG00000011433
Oncorhynchus_a	ANCESTRAL SPECIES	84						ENSGT00940000158235	ENSGT00950000182937.A.a.p	ENSGT00950000182850.a.a.b.e.b.a	ENSGT00940000165556.a.a.b	ENSGT00950000182850.a.a.b.e.a.b	ENSGT00500000044903.a	ENSGT00940000163322.a.b.b	ENSGT00500000044926.h	ENSGT00940000155447.c	ENSGT00940000158288.j	ENSGT00940000155245.k #22	ENSGT00390000000411.gb	ENSGT00940000159449.d	ENSGT00940000156033.e.c	ENSGT01090000260051.b.a.a.b.b.g	ENSGT00730000110974.b	ENSGT00950000183155.a.a.a.a.b	ENSGT00940000164679.e	ENSGT00940000154376.a.b	ENSGT00950000183046.a.b.k	ENSGT00940000158922.c	ENSGT00940000164841	ENSGT00390000012820.h	ENSGT00940000159665.p	ENSGT00940000157790	ENSGT00940000165921.h
Coho salmon	MODERN SPECIES	12	ENSOKIG00005032375	ENSOKIG00005032344	ENSOKIG00005032280	ENSOKIG00005032252	ENSOKIG00005032245	cpn1 (ENSOKIG00005032190)	CHUK (ENSOKIG00005031877)	ENSOKIG00005031835	ABLIM1 (ENSOKIG00005031716)	ALDH18A1 (ENSOKIG00005031518)	ENSOKIG00005031501	ENSOKIG00005031471	fgfr2 (ENSOKIG00005029633)	PLPP4 (ENSOKIG00005029539)	ENSOKIG00005029525	cdh23 (ENSOKIG00005028730) #22	EIF3L (ENSOKIG00005028538)	SLC18A3 (ENSOKIG00005028511)	LRIT1 (ENSOKIG00005028499)	rgra (ENSOKIG00005028481)	NGFR (ENSOKIG00005028472)	ENSOKIG00005028468	ENSOKIG00005028442	ENSOKIG00005028416	SPOP (ENSOKIG00005028389)	ENSOKIG00005028378	RUNDC3A (ENSOKIG00005028288)	pth3r (ENSOKIG00005028178)	TACO1 (ENSOKIG00005028168)	MTARC2 (ENSOKIG00005028161)	ENSOKIG00005028153
Chinook salmon	MODERN SPECIES	16								ENSOTSG00005037704	ablim1a (ENSOTSG00005037212)	ENSOTSG00005037211	ENSOTSG00005037210	ALDH18A1 (ENSOTSG00005037204)	ENSOTSG00005037203	fgfr2 (ENSOTSG00005017789)	PLPP4 (ENSOTSG00005017564)	cdh23 (ENSOTSG00005015142) #22	eif3s6ip (ENSOTSG00005015060)	slc18a3a (ENSOTSG00005015058)	lrit1a (ENSOTSG00005015057)	rgra (ENSOTSG00005015056)	ngfrb (ENSOTSG00005015055)	ENSOTSG00005015053	ENSOTSG00005015050	SPOP (ENSOTSG00005014979)	ENSOTSG00005014976	ENSOTSG00005014974	RUNDC3A (ENSOTSG00005014973)	pth3r (ENSOTSG00005014968)	TACO1 (ENSOTSG00005014961)	MTARC2 (ENSOTSG00005014959)	ENSOTSG00005014956
Huchen	MODERN SPECIES	986															ENSHHUG00000039830	cdh23 (ENSHHUG00000038980) #22	eif3s6ip (ENSHHUG00000038947)	slc18a3a (ENSHHUG00000038943)
Salmoninae	ANCESTRAL SPECIES	310	ENSGT00910000144159.A	ENSGT00390000014666.b	ENSGT00390000014320.c.b.c	ENSGT00940000164764.b	ENSGT00940000157908.g	ENSGT00400000022158.a.i	ENSGT00950000182936.a.b.a.i.b	ENSGT00950000182850.a.a.b.e.b	ENSGT00940000165556.a.a.a	ENSGT00940000157814	ENSGT00500000044926.g	ENSGT00940000155447.d	ENSGT00390000004068	ENSGT00940000158288.i	ENSGT00940000155509.a	ENSGT00940000155245.l #22	ENSGT00940000163216	ENSGT00390000000411.fb	ENSGT00390000018436.a.b
Huchen	DUPLICATION
Huchen	MODERN SPECIES	1421																cdh23 (ENSHHUG00000047403) #22	eif3s6ip (ENSHHUG00000047373)	SMOC2 (ENSHHUG00000047348)
Huchen	MODERN SPECIES	1474															ENSHHUG00000050827	cdh23 (ENSHHUG00000050837) #22	vsir (ENSHHUG00000051092)
Salmoninae_a	ANCESTRAL SPECIES	71	ENSGT00390000001197	ENSGT00910000144159.A	ENSGT00390000014666.b	ENSGT00390000014320.c.b.c	ENSGT00940000164764.b	ENSGT00940000157908.g	ENSGT00400000022158.a.i	ENSGT00950000182936.a.b.a.i.b	ENSGT00950000182850.a.a.b.e.b	ENSGT00940000165556.a.a.a	ENSGT00940000157814	ENSGT00500000044926.g	ENSGT00940000155447.d	ENSGT00390000004068	ENSGT00940000158288.i	ENSGT00940000155245.l #22	ENSGT00940000163216	ENSGT00390000000411.fb	ENSGT00390000018436.a.b	ENSGT01090000260051.b.a.a.b.b.h	ENSGT00940000156033.e.d
Salmo	ANCESTRAL SPECIES	29	ENSGT00910000144159.A	ENSGT00390000014666.b	ENSGT00390000014320.c.b.c	ENSGT00940000164764.b	ENSGT00940000157908.g	ENSGT00400000022158.a.i	ENSGT00950000182936.a.b.a.i.b	ENSGT00950000182850.a.a.b.e.b	ENSGT00950000182850.a.a.b.e.a.a.b	ENSGT00940000165556.a.a.a	ENSGT00940000157814	ENSGT00500000044926.g	ENSGT00940000155447.d	ENSGT00390000004068	ENSGT00940000158288.i	ENSGT00940000155245.l #22	ENSGT00940000163216	ENSGT00390000000411.fb	ENSGT00390000018436.a.b	ENSGT01090000260051.b.a.a.b.b.h	ENSGT00940000156033.e.d
Atlantic salmon	MODERN SPECIES	9	ENSSSAG00000117883	ENSSSAG00000078174	ENSSSAG00000078155	ENSSSAG00000103909	ENSSSAG00000102486	ENSSSAG00000087101	ATE1 (ENSSSAG00000077824)	FGFR2 (ENSSSAG00000056070)	ENSSSAG00000097718	ENSSSAG00000092126	ENSSSAG00000113994	WDR11 (ENSSSAG00000051871)	ENSSSAG00000118828	PLPP4 (ENSSSAG00000120955)	cssa18h10orf54 (ENSSSAG00000051700)	ENSSSAG00000049691 #22	ENSSSAG00000048458	ENSSSAG00000048288	ENSSSAG00000048215	ENSSSAG00000093683	ENSSSAG00000094644	ENSSSAG00000106507	ENSSSAG00000101679	ENSSSAG00000117671	ENSSSAG00000082994	ENSSSAG00000122133	ENSSSAG00000083246	ENSSSAG00000089653	ENSSSAG00000096562	ENSSSAG00000088008	ENSSSAG00000093193
River trout	MODERN SPECIES	35	erlin1 (ENSSTUG00000037592)	adka (ENSSTUG00000038442)	ENSSTUG00000038767	PTK7 (ENSSTUG00000039596)	srfb (ENSSTUG00000043674)	fhip2a (ENSSTUG00000043709)	ablim1a (ENSSTUG00000044243)	ENSSTUG00000044406	ENSSTUG00000044414	ENSSTUG00000044452	ATE1 (ENSSTUG00000044464)	fgfr2 (ENSSTUG00000044836)	ENSSTUG00000049651	wdr11 (ENSSTUG00000049667)	PLPP4 (ENSSTUG00000049735)	cdh23 (ENSSTUG00000049774) #22	ENSSTUG00000050041	ENSSTUG00000050042	vsir (ENSSTUG00000050043)	eif3s6ip (ENSSTUG00000050049)	SMOC2 (ENSSTUG00000050076)	ENSSTUG00000050104	rgra (ENSSTUG00000050105)	lrit1a (ENSSTUG00000050109)	ENSSTUG00000050122	sepsecs (ENSSTUG00000050125)	SLC24A2 (ENSSTUG00000050134)	rpl34 (ENSSTUG00000050137)	ostc (ENSSTUG00000050142)	etnppl (ENSSTUG00000050147)	COL25A1 (ENSSTUG00000050163)
Oncorhynchus	ANCESTRAL SPECIES	2	ENSGT00910000144159.A	ENSGT00390000014666.b	ENSGT00390000014320.c.b.c	ENSGT00940000164764.b	ENSGT00940000157908.g	ENSGT00400000022158.a.i	ENSGT00950000182936.a.b.a.i.b	ENSGT00950000182850.a.a.b.e.b.b	ENSGT00940000165556.a.a.a	ENSGT00940000157814	ENSGT00940000164940.b.h	ENSGT00500000044926.g	ENSGT00940000155447.d	ENSGT00390000004068	ENSGT00940000158288.i	ENSGT00940000155245.l #22	ENSGT00940000163216	ENSGT00390000000411.fb	ENSGT00390000018436.a.b	ENSGT01090000260051.b.a.a.b.b.h	ENSGT00940000156033.e.d	ENSGT00940000155057.wb.h	ENSGT00940000153201.f	ENSGT00940000153588.a.a.b.f	ENSGT00510000048519.b	ENSGT00940000155728.o.a.b	ENSGT00580000081623.y.a.b	ENSGT00990000203541.a.a.a.a.b.c.b	ENSGT00390000017249.f.b	ENSGT00940000158481.c.e	ENSGT00940000157667.c.c.a.a
Oncorhynchus_a	ANCESTRAL SPECIES	1	ENSGT00910000144159.A	ENSGT00390000014666.b	ENSGT00390000014320.c.b.c	ENSGT00940000164764.b	ENSGT00940000157908.g	ENSGT00400000022158.a.i	ENSGT00950000182936.a.b.a.i.b	ENSGT00950000182850.a.a.b.e.b.b	ENSGT00940000165556.a.a.a	ENSGT00940000157814	ENSGT00940000164940.b.h	ENSGT00500000044926.g	ENSGT00940000155447.d	ENSGT00390000004068	ENSGT00940000158288.i	ENSGT00940000155245.l #22	ENSGT00940000163216	ENSGT00390000000411.fb	ENSGT00390000018436.a.b	ENSGT01090000260051.b.a.a.b.b.h	ENSGT00940000156033.e.d	ENSGT00940000155057.wb.h	ENSGT00940000153201.f	ENSGT00940000153588.a.a.b.f	ENSGT00510000048519.b	ENSGT00940000155728.o.a.b	ENSGT00580000081623.y.a.b	ENSGT00990000203541.a.a.a.a.b.c.b	ENSGT00390000017249.f.b	ENSGT00940000158481.c.e	ENSGT00940000157667.c.c.a.a
Coho salmon	MODERN SPECIES	24	erlin1 (ENSOKIG00005029803)	adka (ENSOKIG00005028016)	ENSOKIG00005027585	PTK7 (ENSOKIG00005024538)	srfb (ENSOKIG00005024366)	fhip2a (ENSOKIG00005023168)	ablim1a (ENSOKIG00005023038)	ENSOKIG00005023017	ENSOKIG00005022968	ENSOKIG00005022950	ATE1 (ENSOKIG00005022422)	FGFR2 (ENSOKIG00005015147)	wdr11 (ENSOKIG00005014734)	PLPP4 (ENSOKIG00005014627)	vsir (ENSOKIG00005014608)	CDH23 (ENSOKIG00005014257) #22	eif3s6ip (ENSOKIG00005014011)	SMOC2 (ENSOKIG00005013921)	RGR (ENSOKIG00005013903)	LRIT1 (ENSOKIG00005013894)	MAGI2 (ENSOKIG00005012819)	ENSOKIG00005012720	FLNC (ENSOKIG00005012391)	AEBP2 (ENSOKIG00005012325)	ENSOKIG00005012291	RELN (ENSOKIG00005011859)	LHFPL3 (ENSOKIG00005011756)	tp53i11b (ENSOKIG00005011744)	CD82 (ENSOKIG00005011679)	ENSOKIG00005011663	ENSOKIG00005011657
Chinook salmon	MODERN SPECIES	30	ENSOTSG00005047902	PTK7 (ENSOTSG00005047901)	srfb (ENSOTSG00005047900)	fhip2a (ENSOTSG00005047857)	ablim1a (ENSOTSG00005047851)	ENSOTSG00005047850	ENSOTSG00005047849	ENSOTSG00005047848	ATE1 (ENSOTSG00005047847)	fgfr2 (ENSOTSG00005047148)	ENSOTSG00005047086	wdr11 (ENSOTSG00005047085)	ENSOTSG00005047084	PLPP4 (ENSOTSG00005047083)	vsir (ENSOTSG00005047081)	cdh23 (ENSOTSG00005047060) #22	eif3s6ip (ENSOTSG00005047057)	SMOC2 (ENSOTSG00005047055)	rgra (ENSOTSG00005047054)	lrit1a (ENSOTSG00005047053)	ENSOTSG00005047052	ambra1b (ENSOTSG00005047051)	mdkb (ENSOTSG00005047050)	PHF21A (ENSOTSG00005047049)	PTPN9 (ENSOTSG00005046999)	hbp1 (ENSOTSG00005046998)	PRKAR2B (ENSOTSG00005046995)	ENSOTSG00005046994	NT5DC3 (ENSOTSG00005046993)	cdkn1ca (ENSOTSG00005046992)	ENSOTSG00005046990
Rainbow trout	MODERN SPECIES		ENSOMYG00000074296	SRF (ENSOMYG00000002699)	ENSOMYG00000002550	ENSOMYG00000050022	ENSOMYG00000002172	ENSOMYG00000002036	ENSOMYG00000001904	ENSOMYG00000001785	ENSOMYG00000056298	ATE1 (ENSOMYG00000001659)	FGFR2 (ENSOMYG00000000990)	ENSOMYG00000050718	WDR11 (ENSOMYG00000000509)	PLPP4 (ENSOMYG00000000378)	vsir (ENSOMYG00000000362)	ENSOMYG00000000280 #22	ENSOMYG00000047574	ENSOMYG00000047567	ENSOMYG00000057809	ENSOMYG00000047562	ENSOMYG00000047560	ENSOMYG00000047557	ENSOMYG00000047555	ENSOMYG00000046483	ENSOMYG00000047553	ENSOMYG00000047415	ENSOMYG00000047312	ENSOMYG00000047308	ENSOMYG00000047306	ENSOMYG00000047147	ENSOMYG00000047038
Northern pike	MODERN SPECIES	5	OGFRL1 (ENSELUG00000011690)	b3gat2 (ENSELUG00000011664)	smap1 (ENSELUG00000011620)	ablim1a (ENSELUG00000011523)	ENSELUG00000011354	ENSELUG00000001248	ALDH18A1 (ENSELUG00000011301)	ENSELUG00000011242	ATE1 (ENSELUG00000011221)	fgfr2 (ENSELUG00000011123)	wdr11 (ENSELUG00000010965)	PLPP4 (ENSELUG00000010820)	ENSELUG00000024874	ENSELUG00000010659	vsir (ENSELUG00000010650)	cdh23 (ENSELUG00000010781) #22	eif3s6ip (ENSELUG00000010629)	SMOC2 (ENSELUG00000010601)	dact2 (ENSELUG00000010583)	ENSELUG00000010557	ENSELUG00000010564	rrp12 (ENSELUG00000010510)	ANTXRL (ENSELUG00000010412)	prdm8 (ENSELUG00000010363)	GDF10 (ENSELUG00000010353)	ENSELUG00000010340	mapk8a (ENSELUG00000010249)	ARHGAP22 (ENSELUG00000010189)	ENSELUG00000010156	LRRC18 (ENSELUG00000031038)	ENSELUG00000010054
Osteoglossiformes	ANCESTRAL SPECIES	18	ENSGT00730000111092	ENSGT00390000014606	ENSGT00940000156695 #24	ENSGT00940000165949.a	ENSGT00950000182898.a.a.b #21	ENSGT00950000182815.a.a.a.b #20	ENSGT00390000010398.A	ENSGT00940000157052	ENSGT00940000165188	ENSGT00500000044926	ENSGT00940000155447	ENSGT00390000004068	ENSGT00940000158288	ENSGT00990000204198	ENSGT00940000163216	ENSGT00940000155245 #22	ENSGT00940000162996.c.b	ENSGT00390000000411	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d	ENSGT00940000155293.a.a	ENSGT00900000143203	ENSGT00940000165701	ENSGT00950000182836.b.b.b.b	ENSGT00940000157846.c	ENSGT00390000012017	ENSGT00390000011433.s.a.g
P. kingsleyae	MODERN SPECIES	74	si:ch211-93n23.7 (ENSPKIG00000021652)	CALM2 (ENSPKIG00000021634)	ENSPKIG00000021614	ENSPKIG00000021596	ENSPKIG00000021577	epcam (ENSPKIG00000021561)	KCNK12 (ENSPKIG00000021547)	ATE1 (ENSPKIG00000021502)	fgfr2 (ENSPKIG00000021449)	ENSPKIG00000021389	wdr11 (ENSPKIG00000021337)	PLPP4 (ENSPKIG00000021303)	ENSPKIG00000021282	ENSPKIG00000021271	vsir (ENSPKIG00000021254)	cdh23 (ENSPKIG00000021156) #22	nsmce4a (ENSPKIG00000021110)	ENSPKIG00000021032	ly6pge (ENSPKIG00000020997)
Asian bonytongue	MODERN SPECIES	23	mcu (ENSSFOG00015024260) #34	micu1 (ENSSFOG00015003918) #32	ENSSFOG00015028869	mrps6 (ENSSFOG00015003890)	psap (ENSSFOG00015003877) #24	abcg2c (ENSSFOG00015003621)	SLC29A3 (ENSSFOG00015030363) #21	unc5b (ENSSFOG00015003500) #20	ly6pge (ENSSFOG00015003482)	ENSSFOG00015003422	nsmce4a (ENSSFOG00015003406)	ATE1 (ENSSFOG00015003333)	fgfr2 (ENSSFOG00015003165)	wdr11 (ENSSFOG00015003039)	PLPP4 (ENSSFOG00015003004)	cdh23 (ENSSFOG00015002723) #22	ENSSFOG00015002998	vsir (ENSSFOG00015002981)	eif3s6ip (ENSSFOG00015003021)	ENSSFOG00015024416	ENSSFOG00015024709	SMOC2 (ENSSFOG00015002962)	dact2 (ENSSFOG00015002843)	zgc:172136 (ENSSFOG00015002811)	TARBP1 (ENSSFOG00015002660)	ENSSFOG00015026660	SLC35F3 (ENSSFOG00015002610)	kcnk1b (ENSSFOG00015002601)	ENSSFOG00015002445	agpat4 (ENSSFOG00015002397)	ENSSFOG00015002253
Spotted gar	MODERN SPECIES	671	golga7ba (ENSLOCG00000008912)	sfrp5 (ENSLOCG00000008904)	zfyve27 (ENSLOCG00000008885)	zgc:171482 (ENSLOCG00000008863)	unc5b (ENSLOCG00000008838) #20	SLC29A3 (ENSLOCG00000008830) #21	abcg2c (ENSLOCG00000008815)	ENSLOCG00000008802	nsmce4a (ENSLOCG00000008786)	ATE1 (ENSLOCG00000008771)	fgfr2 (ENSLOCG00000008752)	wdr11 (ENSLOCG00000008740)	PLPP4 (ENSLOCG00000008720)	C10orf105 (ENSLOCG00000018239)	vsir (ENSLOCG00000008708)	cdh23 (ENSLOCG00000008670) #22	psap (ENSLOCG00000008645) #24	mrps6 (ENSLOCG00000018238)	nolc1 (ENSLOCG00000008634)	micu1 (ENSLOCG00000008610) #32	mcu (ENSLOCG00000008593) #34	OIT3 (ENSLOCG00000008577) #35	pla2g12b (ENSLOCG00000008565) #36	p4ha1b (ENSLOCG00000008546) #37	nudt13 (ENSLOCG00000008532)	ENSLOCG00000008522	ENSLOCG00000008508	ecd (ENSLOCG00000008493)	fam149b1 (ENSLOCG00000008469)	dnajc9 (ENSLOCG00000008452)	ENSLOCG00000008443
Reedfish	MODERN SPECIES	10	LDB3 (ENSECRG00000011153)	bmpr1aa (ENSECRG00000011170)	ENSECRG00000011180	sncgb (ENSECRG00000011192)	glud1a (ENSECRG00000011203)	shld2 (ENSECRG00000011230)	nfkb2 (ENSECRG00000011255)	ENSECRG00000011289	ENSECRG00000011321	elovl6l (ENSECRG00000011346)	zgc:154058 (ENSECRG00000011362)	ENSECRG00000011389	ENSECRG00000011407	unc5b (ENSECRG00000011591) #20	SLC29A3 (ENSECRG00000012101) #21	cdh23 (ENSECRG00000012283) #22	C10orf105 (ENSECRG00000008468)	ENSECRG00000008490	psap (ENSECRG00000008507) #24	ENSECRG00000008533	micu1 (ENSECRG00000008556) #32	mcu (ENSECRG00000008582) #34	OIT3 (ENSECRG00000008601) #35	pla2g12b (ENSECRG00000008612) #36	p4ha1b (ENSECRG00000008623) #37	nudt13 (ENSECRG00000008637)	ENSECRG00000008646	ENSECRG00000008658	ecd (ENSECRG00000008667)	fam149b1 (ENSECRG00000008685)	dnajc9 (ENSECRG00000008705)
Elephant shark	MODERN SPECIES	1488	ENSCMIG00000004148	ENSCMIG00000004139	ENSCMIG00000004133	ENSCMIG00000004129	ENSCMIG00000004119	ENSCMIG00000004112	MACROH2A2 (ENSCMIG00000004103)	GBF1 (ENSCMIG00000004041)	pitx3 (ENSCMIG00000004016)	sgpl1 (ENSCMIG00000003755) #18	pcbd1 (ENSCMIG00000003687) #19	unc5b (ENSCMIG00000003588) #20	SLC29A3 (ENSCMIG00000003519) #21	C10orf105 (ENSCMIG00000003517)	ENSCMIG00000003514	cdh23 (ENSCMIG00000003356) #22	bloc1s2 (ENSCMIG00000003273)	ENSCMIG00000003260	ENSCMIG00000003228	ENSCMIG00000003178	tysnd1 (ENSCMIG00000003167) #7	ddit4 (ENSCMIG00000003158) #30	SPOCK2 (ENSCMIG00000003130) #27	ascc1 (ENSCMIG00000003107) #28	anapc16 (ENSCMIG00000003103) #29	dnajb12b (ENSCMIG00000003089) #31	micu1 (ENSCMIG00000003059) #32	mcu (ENSCMIG00000003018) #34	OIT3 (ENSCMIG00000003000) #35	pla2g12b (ENSCMIG00000002993) #36	p4ha1b (ENSCMIG00000002809) #37
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000155245 #22
Lamprey	MODERN SPECIES	422																cdh23 (ENSPMAG00000006222) #22	ENSPMAG00000006327	ENSPMAG00000006355	ENSPMAG00000006392	opn4b (ENSPMAG00000006406)
Hagfish	DUPLICATION
Hagfish	MODERN SPECIES	915												hif1an (ENSEBUG00000010457)	ENSEBUG00000016345	ENSEBUG00000005789 #22	ENSEBUG00000004129	cdh23 (ENSEBUG00000015974) #22	ENSEBUG00000001136 #30	ENSEBUG00000012318	p4ha1b (ENSEBUG00000005379) #37	ENSEBUG00000001390	ENSEBUG00000006947	ENSEBUG00000001204	ENSEBUG00000009551	ENSEBUG00000007724	ENSEBUG00000007801	samd8 (ENSEBUG00000003796)	ENSEBUG00000002228	ENSEBUG00000008389	ENSEBUG00000014771	galnt18a (ENSEBUG00000012709)	rpl10a (ENSEBUG00000005855)
Hagfish	MODERN SPECIES	915														hif1an (ENSEBUG00000010457)	ENSEBUG00000016345	ENSEBUG00000005789 #22	ENSEBUG00000004129	cdh23 (ENSEBUG00000015974) #22	ENSEBUG00000001136 #30	ENSEBUG00000012318	p4ha1b (ENSEBUG00000005379) #37	ENSEBUG00000001390	ENSEBUG00000006947	ENSEBUG00000001204	ENSEBUG00000009551	ENSEBUG00000007724	ENSEBUG00000007801	samd8 (ENSEBUG00000003796)	ENSEBUG00000002228	ENSEBUG00000008389	ENSEBUG00000014771