Euteleostomi	ANCESTRAL SPECIES	104							ENSGT00940000161136	ENSGT00940000159348	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00390000018360	ENSGT00940000156893	ENSGT00390000002049.d	ENSGT01030000234542.b.b.a.a.b	ENSGT00940000157006	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000154662	ENSGT01030000234539.a.a.a ##22	ENSGT00940000162053	ENSGT00940000153487.b.a	ENSGT00940000159261	ENSGT01030000234534.B.a.a.a.a	ENSGT00940000160088	ENSGT00940000159237	ENSGT00990000205656	ENSGT00940000160050	ENSGT00530000063615.a	ENSGT00940000159004	ENSGT00940000159440	ENSGT00530000063841.b	ENSGT00940000160191
Sarcopterygii	ANCESTRAL SPECIES	104		ENSGT00390000005318.a	ENSGT00390000003420.b	ENSGT01030000234559.a.a.a	ENSGT00950000183102.B	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00390000018044.b.b	ENSGT00940000163917.b	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000160775	ENSGT00940000162148	ENSGT00940000158364	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000154662	ENSGT01030000234539.a.a.a ##22	ENSGT00940000166634	ENSGT00940000162053	ENSGT00940000153487.b.a	ENSGT00940000159261	ENSGT01030000234534.B.a.a.a.a	ENSGT00940000160088	ENSGT00940000159237	ENSGT00990000205656	ENSGT00940000160050	ENSGT00530000063615.a	ENSGT00940000159004	ENSGT00940000159440	ENSGT00530000063841.b
Tetrapoda	ANCESTRAL SPECIES	80	ENSGT00390000005318.a	ENSGT00940000161213	ENSGT00390000003420.b	ENSGT01030000234559.a.a.a	ENSGT00950000183102.B	ENSGT00940000159258	ENSGT00940000160036	ENSGT00940000160384	ENSGT00390000001201	ENSGT00390000018044.b.b	ENSGT00940000163917.b	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000160775	ENSGT00940000162148	ENSGT00940000158364	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000154662	ENSGT01030000234539.a.a.a ##22	ENSGT00940000162053	ENSGT00940000153487.b.a	ENSGT00940000159261	ENSGT01030000234534.B.a.a.a.a	ENSGT00940000160088	ENSGT00940000159237	ENSGT00990000205656	ENSGT00940000160050	ENSGT00530000063615.a	ENSGT00940000159004	ENSGT00940000159440	ENSGT00530000063841.b	ENSGT00940000160191
Amniota	ANCESTRAL SPECIES	4	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000178986	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000164047.c.b	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E #31	ENSGT00390000018729.a #32	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Mammalia	ANCESTRAL SPECIES	10	ENSGT00940000164634	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000164047.c.b	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402
Theria	ANCESTRAL SPECIES	11	ENSGT01070000254624	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000164047.c.b	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402
Eutheria	ANCESTRAL SPECIES	20	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000164047.c.b	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402
Boreoeutheria	ANCESTRAL SPECIES	22	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT00390000002428.a.g.b #19	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Euarchontoglires	ANCESTRAL SPECIES	22	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT00390000002428.a.g.b #19	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Primates	ANCESTRAL SPECIES	24	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT00390000002428.a.g.b #19	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Haplorrhini	ANCESTRAL SPECIES	25	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT00390000002428.a.g.b #19	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Simiiformes	ANCESTRAL SPECIES	24	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT00390000002428.a.g.b #19	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167.g #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Catarrhini	ANCESTRAL SPECIES	23	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT00390000002428.a.g.b.a.a #20	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167.g #26	ENSGT00390000006029 #27	ENSGT00550000074846.i #28	ENSGT00440000033919.b	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402
Cercopithecidae	ANCESTRAL SPECIES	25	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b.b	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT00390000002428.a.g.b.a.a #20	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167.g #26	ENSGT00390000006029 #27	ENSGT00550000074846.i #28	ENSGT00440000033919.b	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402
Rhinopithecus	ANCESTRAL SPECIES	314												ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167.g #26	ENSGT00390000006029 #27	ENSGT00550000074846.i #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00950000182878.b.b.`b.a.b.b #35
Black snub-nosed monkey	MODERN SPECIES	1904										SKOR2 (ENSRBIG00000043935) #16	IER3IP1 (ENSRBIG00000028883) #17	ENSRBIG00000034951 #18	ENSRBIG00000006980 #19	ELOA2 (ENSRBIG00000033712) #20	KATNAL2 (ENSRBIG00000040316) #21	PIAS2 (ENSRBIG00000038220) #22	ST8SIA5 (ENSRBIG00000030321) #23	LOXHD1 (ENSRBIG00000042735) #24	RNF165 (ENSRBIG00000023642) #25	C18orf25 (ENSRBIG00000030339) #26	HAUS1 (ENSRBIG00000035142) #27	ATP5F1A (ENSRBIG00000039573) #28	PSTPIP2 (ENSRBIG00000030324) #29	EPG5 (ENSRBIG00000034374) #30	SIGLEC15 (ENSRBIG00000032827) #31	SLC14A1 (ENSRBIG00000006426) #32	SLC14A2 (ENSRBIG00000044802) #33	SETBP1 (ENSRBIG00000031542) #34	ENSRBIG00000042956 #35
Golden snub-nosed monkey	MODERN SPECIES	2593																PIAS2 (ENSRROG00000042621) #22	ST8SIA5 (ENSRROG00000031162) #23	LOXHD1 (ENSRROG00000040918) #24	RNF165 (ENSRROG00000031586) #25	C18orf25 (ENSRROG00000033480) #26	HAUS1 (ENSRROG00000037112) #27	ATP5F1A (ENSRROG00000045593) #28	PSTPIP2 (ENSRROG00000028940) #29	ENSRROG00000034815 #30
Cercopithecinae	ANCESTRAL SPECIES	22	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b.a	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT00390000002428.a.g.b.a.a #20	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167.g #26	ENSGT00390000006029 #27	ENSGT00550000074846.i #28	ENSGT00440000033919.b	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402
Cercopithecinae_a	ANCESTRAL SPECIES	21	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b.a	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT01100000264016	ENSGT01030000234542.b.b.a.a.a.b.t.a	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT00390000002428.a.g.b.a.a #20	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167.g #26	ENSGT00390000006029 #27	ENSGT00550000074846.i #28	ENSGT00440000033919.b	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402
Cercopithecinae_b	ANCESTRAL SPECIES	25	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b.a	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT01100000264016	ENSGT01030000234542.b.b.a.a.a.b.t.a	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT00390000002428.a.g.b.a.a #20	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167.g #26	ENSGT00390000006029 #27	ENSGT00550000074846.i #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Cercopithecinae_d	ANCESTRAL SPECIES	40	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT01100000264016	ENSGT01030000234542.b.b.a.a.a.b.t.a	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT00390000002428.a.g.b.a.a #20	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167.g #26	ENSGT00390000006029 #27	ENSGT00550000074846.i #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Drill	MODERN SPECIES	709																PIAS2 (ENSMLEG00000044179) #22	ST8SIA5 (ENSMLEG00000030785) #23	LOXHD1 (ENSMLEG00000040256) #24	RNF165 (ENSMLEG00000035276) #25	C18orf25 (ENSMLEG00000030148) #26	HAUS1 (ENSMLEG00000036949) #27	ENSMLEG00000000233	PSTPIP2 (ENSMLEG00000039022) #29	EPG5 (ENSMLEG00000033487) #30	SLC14A1 (ENSMLEG00000042901) #32	SLC14A2 (ENSMLEG00000033504) #33	SETBP1 (ENSMLEG00000004384) #34	SYT4 (ENSMLEG00000032128)	RIT2 (ENSMLEG00000038122)
Sooty mangabey	MODERN SPECIES	190	ENSCATG00000037257	ENSCATG00000018328	DYM (ENSCATG00000031272)	ENSCATG00000037245	SMAD7 (ENSCATG00000037681)	CTIF (ENSCATG00000038134)	ENSCATG00000045052	ENSCATG00000005038	ZBTB7C (ENSCATG00000044413)	SMAD2 (ENSCATG00000003842)	SKOR2 (ENSCATG00000035815) #16	IER3IP1 (ENSCATG00000035811) #17	HDHD2 (ENSCATG00000035277) #18	KATNAL2 (ENSCATG00000037094) #21	ELOA2 (ENSCATG00000032113) #20	PIAS2 (ENSCATG00000034031) #22	ST8SIA5 (ENSCATG00000030338) #23	LOXHD1 (ENSCATG00000036618) #24	RNF165 (ENSCATG00000037696) #25	C18orf25 (ENSCATG00000039068) #26	HAUS1 (ENSCATG00000025348) #27	ATP5F1A (ENSCATG00000025898) #28	PSTPIP2 (ENSCATG00000033892) #29	EPG5 (ENSCATG00000038496) #30	SIGLEC15 (ENSCATG00000043629) #31	SLC14A1 (ENSCATG00000025983) #32	SLC14A2 (ENSCATG00000032025) #33	SETBP1 (ENSCATG00000033792) #34	SYT4 (ENSCATG00000032803)	RIT2 (ENSCATG00000034055)	PIK3C3 (ENSCATG00000041912)
Olive baboon	MODERN SPECIES	10	ACAA2 (ENSPANG00000002878)	LIPG (ENSPANG00000024235)	ENSPANG00000031295	C18orf32 (ENSPANG00000040941)	ENSPANG00000037588	ENSPANG00000046129	SMAD7 (ENSPANG00000025519)	CTIF (ENSPANG00000017087)	ZBTB7C (ENSPANG00000016942)	SMAD2 (ENSPANG00000025520)	SKOR2 (ENSPANG00000017535) #16	IER3IP1 (ENSPANG00000041314) #17	HDHD2 (ENSPANG00000010312) #18	ELOA2 (ENSPANG00000049945) #20	KATNAL2 (ENSPANG00000017088) #21	PIAS2 (ENSPANG00000016213) #22	ST8SIA5 (ENSPANG00000024947) #23	LOXHD1 (ENSPANG00000025288) #24	RNF165 (ENSPANG00000025287) #25	C18orf25 (ENSPANG00000006488) #26	HAUS1 (ENSPANG00000029808) #27	ATP5F1A (ENSPANG00000007341) #28	PSTPIP2 (ENSPANG00000019094) #29	EPG5 (ENSPANG00000009665) #30	SIGLEC15 (ENSPANG00000013868) #31	SLC14A1 (ENSPANG00000010058) #32	SLC14A2 (ENSPANG00000010314) #33	SETBP1 (ENSPANG00000014223) #34	ENSPANG00000044709	SYT4 (ENSPANG00000036999)	RIT2 (ENSPANG00000009666)
Macaca	ANCESTRAL SPECIES	22	ENSGT00950000183010.a.a.a.b.a.a.a.a.b.b	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT01100000264016	ENSGT01030000234542.b.b.a.a.a.b.t.a	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT00390000002428.a.g.b.a.a.a #20	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167.g #26	ENSGT00390000006029 #27	ENSGT00550000074846.i #28	ENSGT00440000033919.b	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402
Macaca_a	ANCESTRAL SPECIES	21	ENSGT00940000159394	ENSGT00940000155478.r	ENSGT01100000263493.a.b.a.a.b.b.a.b.a.a.a.a.b.a.a	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT00390000002428.a.g.b.a.a.a #20	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167.g #26	ENSGT01100000263493.a.b.a.a.a.b.a.a.b.b.a.a.b.b	ENSGT00390000006029 #27	ENSGT00550000074846.i #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402
Rhesus	MODERN SPECIES	9	LIPG (ENSMMUG00000019054)	ENSMMUG00000038584	ENSMMUG00000064858	RPL17 (ENSMMUG00000018837)	DYM (ENSMMUG00000001760)	SMAD7 (ENSMMUG00000056276)	CTIF (ENSMMUG00000020898)	ZBTB7C (ENSMMUG00000015704)	SMAD2 (ENSMMUG00000007816)	ENSMMUG00000050569	SKOR2 (ENSMMUG00000048459) #16	IER3IP1 (ENSMMUG00000059289) #17	HDHD2 (ENSMMUG00000010999) #18	KATNAL2 (ENSMMUG00000015952) #21	ELOA2 (ENSMMUG00000044172) #20	PIAS2 (ENSMMUG00000004498) #22	ENSMMUG00000050406	ST8SIA5 (ENSMMUG00000002742) #23	LOXHD1 (ENSMMUG00000017246) #24	RNF165 (ENSMMUG00000017243) #25	C18H18orf25 (ENSMMUG00000011473) #26	ENSMMUG00000056307	HAUS1 (ENSMMUG00000003124) #27	ATP5F1A (ENSMMUG00000003570) #28	PSTPIP2 (ENSMMUG00000003566) #29	EPG5 (ENSMMUG00000003562) #30	SIGLEC15 (ENSMMUG00000003561) #31	SLC14A1 (ENSMMUG00000011037) #32	ENSMMUG00000061645	SLC14A2 (ENSMMUG00000004010) #33	SETBP1 (ENSMMUG00000004997) #34
Crab-eating macaque	MODERN SPECIES	9	ENSMFAG00000065559	ENSMFAG00000064429	SMAD7 (ENSMFAG00000042998)	ENSMFAG00000061902	CTIF (ENSMFAG00000037903)	ENSMFAG00000052298	ENSMFAG00000058784	ZBTB7C (ENSMFAG00000031667)	SMAD2 (ENSMFAG00000045652)	ENSMFAG00000063952 #16	IER3IP1 (ENSMFAG00000060309) #17	HDHD2 (ENSMFAG00000012951) #18	KATNAL2 (ENSMFAG00000029779) #21	ENSMFAG00000031677 #20	ENSMFAG00000031695 #20	PIAS2 (ENSMFAG00000031982) #22	ENSMFAG00000050857	ST8SIA5 (ENSMFAG00000035970) #23	LOXHD1 (ENSMFAG00000037181) #24	RNF165 (ENSMFAG00000000616) #25	C18orf25 (ENSMFAG00000042249) #26	ENSMFAG00000052445	HAUS1 (ENSMFAG00000043557) #27	ENSMFAG00000049075	ATP5F1A (ENSMFAG00000001649) #28	PSTPIP2 (ENSMFAG00000037150) #29	EPG5 (ENSMFAG00000042030) #30	SIGLEC15 (ENSMFAG00000031829) #31	SLC14A1 (ENSMFAG00000032229) #32	SLC14A2 (ENSMFAG00000033369) #33	ENSMFAG00000052144 #34
Pig-tailed macaque	MODERN SPECIES	83															ENSMNEG00000027937 #20	PIAS2 (ENSMNEG00000039217) #22	ST8SIA5 (ENSMNEG00000044054) #23	LOXHD1 (ENSMNEG00000034385) #24	RNF165 (ENSMNEG00000036521) #25	C18orf25 (ENSMNEG00000029969) #26	HAUS1 (ENSMNEG00000038252) #27	ATP5F1A (ENSMNEG00000043078) #28	ENSMNEG00000042346	PSTPIP2 (ENSMNEG00000038319) #29	EPG5 (ENSMNEG00000043373) #30	SIGLEC15 (ENSMNEG00000045537) #31	SLC14A1 (ENSMNEG00000028121) #32	SLC14A2 (ENSMNEG00000037033) #33	SETBP1 (ENSMNEG00000021021) #34	ENSMNEG00000042877 #35	SYT4 (ENSMNEG00000037117)
Vervet Monkey	MODERN SPECIES	9	MYO5B (ENSCSAG00000018060)	ACAA2 (ENSCSAG00000018054)	LIPG (ENSCSAG00000018043)	C18orf32 (ENSCSAG00000018029)	DYM (ENSCSAG00000018028)	ENSCSAG00000018569	SMAD7 (ENSCSAG00000018024)	CTIF (ENSCSAG00000018021)	ZBTB7C (ENSCSAG00000018018)	SMAD2 (ENSCSAG00000018016)	SKOR2 (ENSCSAG00000018012) #16	IER3IP1 (ENSCSAG00000018009) #17	HDHD2 (ENSCSAG00000018007) #18	KATNAL2 (ENSCSAG00000018001) #21	ELOA2 (ENSCSAG00000018570) #20	PIAS2 (ENSCSAG00000017995) #22	ST8SIA5 (ENSCSAG00000017993) #23	LOXHD1 (ENSCSAG00000017984) #24	RNF165 (ENSCSAG00000017974) #25	C18orf25 (ENSCSAG00000017972) #26	HAUS1 (ENSCSAG00000017970) #27	ATP5F1A (ENSCSAG00000017968) #28	PSTPIP2 (ENSCSAG00000017965) #29	EPG5 (ENSCSAG00000017960) #30	SIGLEC15 (ENSCSAG00000017954) #31	SLC14A1 (ENSCSAG00000017952) #32	SLC14A2 (ENSCSAG00000017951) #33	ENSCSAG00000017949 #34	ENSCSAG00000017947 #34	SYT4 (ENSCSAG00000017945)	RIT2 (ENSCSAG00000017944)
Hominoidea	ANCESTRAL SPECIES	24	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b.a	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT01100000265012	ENSGT00910000147179	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT00390000002428.a.g.b.a.a #20	ENSGT00390000002428.a.g.b.a.b ##19	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167.g #26	ENSGT00390000006029 #27	ENSGT00550000074846.i #28	ENSGT00440000033919.b	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402
Hominidae	ANCESTRAL SPECIES	24	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT01100000265012	ENSGT00910000147179	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT00390000002428.a.g.b.a.a #20	ENSGT00390000002428.a.g.b.a.b ##19	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167.g #26	ENSGT00390000006029 #27	ENSGT00550000074846.i #28	ENSGT00440000033919.b	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	26	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT01100000265012	ENSGT00910000147179	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT00390000002428.a.g.b.a.a #20	ENSGT00390000002428.a.g.b.a.b ##19	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167.g #26	ENSGT00390000006029 #27	ENSGT00550000074846.i #28	ENSGT00440000033919.b	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402
Gorilla	MODERN SPECIES	9	CTIF (ENSGGOG00000015204)	ENSGGOG00000037898	ENSGGOG00000022625	ZBTB7C (ENSGGOG00000008438)	SMAD2 (ENSGGOG00000004706)	ENSGGOG00000037285	SKOR2 (ENSGGOG00000006679) #16	ENSGGOG00000022397	IER3IP1 (ENSGGOG00000027939) #17	HDHD2 (ENSGGOG00000016414) #18	ENSGGOG00000010534 #20	ENSGGOG00000044154 ##19	ENSGGOG00000041035 ##19	ENSGGOG00000040155 ##19	KATNAL2 (ENSGGOG00000006796) #21	PIAS2 (ENSGGOG00000025821) #22	ST8SIA5 (ENSGGOG00000013794) #23	LOXHD1 (ENSGGOG00000005588) #24	RNF165 (ENSGGOG00000005584) #25	HAUS1 (ENSGGOG00000010098) #27	ATP5F1A (ENSGGOG00000016560) #28	ENSGGOG00000041127	PSTPIP2 (ENSGGOG00000025030) #29	EPG5 (ENSGGOG00000007816) #30	SIGLEC15 (ENSGGOG00000007810) #31	SLC14A1 (ENSGGOG00000008152) #32	SLC14A2 (ENSGGOG00000001047) #33	SETBP1 (ENSGGOG00000014151) #34	SYT4 (ENSGGOG00000006097)	RIT2 (ENSGGOG00000005603)	PIK3C3 (ENSGGOG00000015471)
Homo/Pan group	ANCESTRAL SPECIES	25	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT01100000265012	ENSGT00910000147179	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT00390000002428.a.g.b.a.a #20	ENSGT00390000002428.a.g.b.a.b ##19	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167.g #26	ENSGT00390000006029 #27	ENSGT00550000074846.i #28	ENSGT00440000033919.b	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402
Pan	ANCESTRAL SPECIES	24	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT01100000265012	ENSGT00910000147179	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00910000148711	ENSGT00390000016823.q	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT00390000002428.a.g.b.a.a #20	ENSGT00390000002428.a.g.b.a.b ##19	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167.g #26	ENSGT00390000006029 #27	ENSGT00550000074846.i #28	ENSGT00440000033919.b	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402
Chimpanzee	MODERN SPECIES	9	SMAD7 (ENSPTRG00000010010)	CTIF (ENSPTRG00000010009)	ENSPTRG00000045008	ENSPTRG00000050449	ZBTB7C (ENSPTRG00000010006)	SMAD2 (ENSPTRG00000043695)	ENSPTRG00000051707	ENSPTRG00000049336	ENSPTRG00000051288	SKOR2 (ENSPTRG00000033850) #16	IER3IP1 (ENSPTRG00000010002) #17	HDHD2 (ENSPTRG00000010001) #18	ELOA2 (ENSPTRG00000029302) #20	ENSPTRG00000041809 ##19	KATNAL2 (ENSPTRG00000009999) #21	PIAS2 (ENSPTRG00000009998) #22	ST8SIA5 (ENSPTRG00000009997) #23	LOXHD1 (ENSPTRG00000009995) #24	RNF165 (ENSPTRG00000009994) #25	C18orf25 (ENSPTRG00000009993) #26	HAUS1 (ENSPTRG00000009992) #27	ATP5F1A (ENSPTRG00000009991) #28	ENSPTRG00000051812	PSTPIP2 (ENSPTRG00000009990) #29	EPG5 (ENSPTRG00000009989) #30	SIGLEC15 (ENSPTRG00000024035) #31	SLC14A1 (ENSPTRG00000009988) #32	SLC14A2 (ENSPTRG00000009987) #33	SETBP1 (ENSPTRG00000009986) #34	SYT4 (ENSPTRG00000009985)	RIT2 (ENSPTRG00000009984)
Bonobo	MODERN SPECIES	9	C18orf32 (ENSPPAG00000027512)	DYM (ENSPPAG00000033907)	ENSPPAG00000031318	CTIF (ENSPPAG00000023554)	ENSPPAG00000041550	ENSPPAG00000033132	ZBTB7C (ENSPPAG00000039903)	SMAD2 (ENSPPAG00000035419)	ENSPPAG00000032994	ENSPPAG00000030667	IER3IP1 (ENSPPAG00000029166) #17	HDHD2 (ENSPPAG00000028597) #18	ENSPPAG00000028060 #20	ENSPPAG00000027606 ##19	KATNAL2 (ENSPPAG00000019290) #21	PIAS2 (ENSPPAG00000035511) #22	ST8SIA5 (ENSPPAG00000032695) #23	LOXHD1 (ENSPPAG00000023447) #24	RNF165 (ENSPPAG00000035141) #25	C18orf25 (ENSPPAG00000034677) #26	HAUS1 (ENSPPAG00000034062) #27	ATP5F1A (ENSPPAG00000030055) #28	ENSPPAG00000028807	PSTPIP2 (ENSPPAG00000028251) #29	EPG5 (ENSPPAG00000025948) #30	SIGLEC15 (ENSPPAG00000018825) #31	SLC14A1 (ENSPPAG00000012434) #32	SLC14A2 (ENSPPAG00000036617) #33	SETBP1 (ENSPPAG00000037611) #34	SYT4 (ENSPPAG00000035230)	RIT2 (ENSPPAG00000034063)
Human	MODERN SPECIES	9	ACAA2 (ENSG00000167315)	LIPG (ENSG00000101670)	RPL17 (ENSG00000265681)	RPL17-C18orf32 (ENSG00000215472)	C18orf32 (ENSG00000177576)	DYM (ENSG00000141627)	SMAD7 (ENSG00000101665)	CTIF (ENSG00000134030)	ZBTB7C (ENSG00000184828)	SMAD2 (ENSG00000175387)	SKOR2 (ENSG00000215474) #16	IER3IP1 (ENSG00000134049) #17	HDHD2 (ENSG00000167220) #18	ELOA2 (ENSG00000206181) #20	KATNAL2 (ENSG00000167216) #21	PIAS2 (ENSG00000078043) #22	ST8SIA5 (ENSG00000101638) #23	LOXHD1 (ENSG00000167210) #24	RNF165 (ENSG00000141622) #25	C18orf25 (ENSG00000152242) #26	HAUS1 (ENSG00000152240) #27	ATP5F1A (ENSG00000152234) #28	PSTPIP2 (ENSG00000152229) #29	SIGLEC15 (ENSG00000197046) #31	EPG5 (ENSG00000152223) #30	SLC14A1 (ENSG00000141469) #32	SLC14A2 (ENSG00000132874) #33	SETBP1 (ENSG00000152217) #34	SYT4 (ENSG00000132872)	RIT2 (ENSG00000152214)	PIK3C3 (ENSG00000078142)
Orangutan	MODERN SPECIES	9	LIPG (ENSPPYG00000009153)	ENSPPYG00000009151	C18orf32 (ENSPPYG00000033389)	DYM (ENSPPYG00000009149)	SMAD7 (ENSPPYG00000009148)	CTIF (ENSPPYG00000009147)	ZBTB7C (ENSPPYG00000009145)	SMAD2 (ENSPPYG00000009144)	ENSPPYG00000037397	ENSPPYG00000030833	SKOR2 (ENSPPYG00000009142) #16	IER3IP1 (ENSPPYG00000009140) #17	HDHD2 (ENSPPYG00000009139) #18	ENSPPYG00000009137 ##19	KATNAL2 (ENSPPYG00000009138) #21	PIAS2 (ENSPPYG00000009136) #22	ST8SIA5 (ENSPPYG00000009135) #23	LOXHD1 (ENSPPYG00000009134) #24	RNF165 (ENSPPYG00000009133) #25	C18H18orf25 (ENSPPYG00000009132) #26	HAUS1 (ENSPPYG00000009131) #27	ATP5F1A (ENSPPYG00000009130) #28	PSTPIP2 (ENSPPYG00000009129) #29	EPG5 (ENSPPYG00000009128) #30	SIGLEC15 (ENSPPYG00000009127) #31	SLC14A1 (ENSPPYG00000009125) #32	SLC14A2 (ENSPPYG00000009124) #33	SETBP1 (ENSPPYG00000009123) #34	SYT4 (ENSPPYG00000009122)	RIT2 (ENSPPYG00000009121)	PIK3C3 (ENSPPYG00000009120)
Gibbon	MODERN SPECIES	19	ENSNLEG00000011500	ZBTB7C (ENSNLEG00000011492)	SMAD2 (ENSNLEG00000011463)	ENSNLEG00000011462	ENSNLEG00000029516	ENSNLEG00000029297 #16	IER3IP1 (ENSNLEG00000011450) #17	ENSNLEG00000029962	HDHD2 (ENSNLEG00000036069) #18	KATNAL2 (ENSNLEG00000011402) #21	ELOA2 (ENSNLEG00000011422) #20	ENSNLEG00000026544 ##19	ENSNLEG00000034552 ##19	ENSNLEG00000031576 ##19	ENSNLEG00000032966 ##19	PIAS2 (ENSNLEG00000011351) #22	ST8SIA5 (ENSNLEG00000011343) #23	LOXHD1 (ENSNLEG00000011276) #24	RNF165 (ENSNLEG00000011270) #25	C18orf25 (ENSNLEG00000011251) #26	HAUS1 (ENSNLEG00000011216) #27	ATP5F1A (ENSNLEG00000010973) #28	PSTPIP2 (ENSNLEG00000010965) #29	EPG5 (ENSNLEG00000010921) #30	SIGLEC15 (ENSNLEG00000010918) #31	SLC14A1 (ENSNLEG00000010845) #32	SLC14A2 (ENSNLEG00000010799) #33	SETBP1 (ENSNLEG00000010776) #34	SYT4 (ENSNLEG00000010756)	RIT2 (ENSNLEG00000010755)	PIK3C3 (ENSNLEG00000010650)
Platyrrhini	ANCESTRAL SPECIES	26	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT00390000002428.a.g.b #19	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167.g #26	ENSGT00390000006029.a #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Cebidae	ANCESTRAL SPECIES	28	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b	ENSGT00390000018741.ab	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741.`b.a	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT00390000002428.a.g.b #19	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167.g #26	ENSGT00390000006029.a #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Cebidae_a	ANCESTRAL SPECIES	23	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b	ENSGT00390000018741.ab	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741.`b.a	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT00390000002428.a.g.b #19	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00940000154677.g.a.d	ENSGT00390000016167.g #26	ENSGT00390000006029.a #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402
Capuchin	MODERN SPECIES	60	LIPG (ENSCCAG00000023643)	RPL17 (ENSCCAG00000024026)	ENSCCAG00000023815	DYM (ENSCCAG00000032314)	ENSCCAG00000037376	SMAD7 (ENSCCAG00000033513)	CTIF (ENSCCAG00000022758)	ZBTB7C (ENSCCAG00000034868)	SMAD2 (ENSCCAG00000036243)	ENSCCAG00000037809 ##35	SKOR2 (ENSCCAG00000021025) #16	IER3IP1 (ENSCCAG00000036067) #17	HDHD2 (ENSCCAG00000022419) #18	KATNAL2 (ENSCCAG00000027056) #21	ENSCCAG00000033839 #19	PIAS2 (ENSCCAG00000022843) #22	ST8SIA5 (ENSCCAG00000023326) #23	LOXHD1 (ENSCCAG00000024237) #24	RNF165 (ENSCCAG00000015794) #25	ENSCCAG00000028369	C18orf25 (ENSCCAG00000013731) #26	HAUS1 (ENSCCAG00000026991) #27	ATP5F1A (ENSCCAG00000035404) #28	PSTPIP2 (ENSCCAG00000026201) #29	ENSCCAG00000033907	EPG5 (ENSCCAG00000019864) #30	SIGLEC15 (ENSCCAG00000029871) #31	SLC14A1 (ENSCCAG00000020737) #32	SLC14A2 (ENSCCAG00000022464) #33	SETBP1 (ENSCCAG00000024635) #34	ENSCCAG00000032254
Bolivian squirrel monkey	MODERN SPECIES	53																PIAS2 (ENSSBOG00000033248) #22	ENSSBOG00000032457	ST8SIA5 (ENSSBOG00000024606) #23	LOXHD1 (ENSSBOG00000027079) #24	RNF165 (ENSSBOG00000031789) #25	ENSSBOG00000030458	C18orf25 (ENSSBOG00000026230) #26	ENSSBOG00000027223 #27	ATP5F1A (ENSSBOG00000002379) #28	PSTPIP2 (ENSSBOG00000021234) #29	ENSSBOG00000033021	EPG5 (ENSSBOG00000021065) #30	SIGLEC15 (ENSSBOG00000022894) #31	SLC14A1 (ENSSBOG00000033512) #32	SLC14A2 (ENSSBOG00000022319) #33	SETBP1 (ENSSBOG00000025213) #34
Marmoset	MODERN SPECIES	4	ENSCJAG00000076436	DYM (ENSCJAG00000004754)	ENSCJAG00000060917	ENSCJAG00000067581	SMAD7 (ENSCJAG00000039611)	CTIF (ENSCJAG00000004729)	ZBTB7C (ENSCJAG00000004704)	ENSCJAG00000081448	SMAD2 (ENSCJAG00000004630)	ENSCJAG00000071063	SKOR2 (ENSCJAG00000048253) #16	IER3IP1 (ENSCJAG00000072341) #17	HDHD2 (ENSCJAG00000004578) #18	ENSCJAG00000060346	KATNAL2 (ENSCJAG00000008107) #21	PIAS2 (ENSCJAG00000008199) #22	ST8SIA5 (ENSCJAG00000081047) #23	LOXHD1 (ENSCJAG00000008221) #24	RNF165 (ENSCJAG00000073766) #25	ENSCJAG00000075854	C18orf25 (ENSCJAG00000008285) #26	ENSCJAG00000079309	HAUS1 (ENSCJAG00000008303) #27	ENSCJAG00000008319 #28	SIGLEC15 (ENSCJAG00000008603) #31	EPG5 (ENSCJAG00000008484) #30	ENSCJAG00000048632 #32	SLC14A2 (ENSCJAG00000004051) #33	SETBP1 (ENSCJAG00000004035) #34	ENSCJAG00000082171	SYT4 (ENSCJAG00000004002)
Mas night monkey	MODERN SPECIES	426	LIPG (ENSANAG00000020805)	ENSANAG00000038237	ENSANAG00000032933	DYM (ENSANAG00000029190)	SMAD7 (ENSANAG00000028079)	CTIF (ENSANAG00000024925)	ZBTB7C (ENSANAG00000033116)	SMAD2 (ENSANAG00000031458)	ENSANAG00000030706	SKOR2 (ENSANAG00000030804) #16	IER3IP1 (ENSANAG00000023921) #17	ENSANAG00000023759	HDHD2 (ENSANAG00000036024) #18	KATNAL2 (ENSANAG00000030359) #21	ENSANAG00000027601	PIAS2 (ENSANAG00000036127) #22	ST8SIA5 (ENSANAG00000020554) #23	LOXHD1 (ENSANAG00000026289) #24	RNF165 (ENSANAG00000032671) #25	C18orf25 (ENSANAG00000015359) #26	ENSANAG00000034812 #27	ATP5F1A (ENSANAG00000020684) #28	ENSANAG00000036960	ENSANAG00000026020	PSTPIP2 (ENSANAG00000033626) #29	EPG5 (ENSANAG00000028542) #30	SIGLEC15 (ENSANAG00000020739) #31	SLC14A1 (ENSANAG00000035909) #32	SLC14A2 (ENSANAG00000024503) #33	SETBP1 (ENSANAG00000026892) #34	SYT4 (ENSANAG00000028853)
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	4783																ENSTSYG00000000026 #22	ST8SIA5 (ENSTSYG00000035138) #23	LOXHD1 (ENSTSYG00000033259) #24	RNF165 (ENSTSYG00000012781) #25
Tarsier	MODERN SPECIES	4223																ENSTSYG00000032952 #22	ENSTSYG00000029241
Strepsirrhini	ANCESTRAL SPECIES	22	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741.s	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Lemuriformes	ANCESTRAL SPECIES	25	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741.s	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Mouse lemur	MODERN SPECIES	10	CFAP53 (ENSMICG00000006410)	MYO5B (ENSMICG00000005287)	ACAA2 (ENSMICG00000005278)	LIPG (ENSMICG00000017104)	ENSMICG00000017102	C18orf32 (ENSMICG00000042525)	DYM (ENSMICG00000017535)	SMAD7 (ENSMICG00000034183)	CTIF (ENSMICG00000010167)	ZBTB7C (ENSMICG00000038331)	SMAD2 (ENSMICG00000007882)	SKOR2 (ENSMICG00000031129) #16	IER3IP1 (ENSMICG00000043887) #17	HDHD2 (ENSMICG00000042121) #18	KATNAL2 (ENSMICG00000007857) #21	PIAS2 (ENSMICG00000013229) #22	ST8SIA5 (ENSMICG00000013224) #23	ENSMICG00000017500 #28	LOXHD1 (ENSMICG00000001316) #24	RNF165 (ENSMICG00000011741) #25	C18orf25 (ENSMICG00000004834) #26	HAUS1 (ENSMICG00000017501) #27	ENSMICG00000028901 #28	PSTPIP2 (ENSMICG00000017499) #29	EPG5 (ENSMICG00000017498) #30	SIGLEC15 (ENSMICG00000017497) #31	SLC14A1 (ENSMICG00000017496) #32	SLC14A2 (ENSMICG00000017495) #33	SETBP1 (ENSMICG00000017494) #34	SYT4 (ENSMICG00000027289)	RIT2 (ENSMICG00000006203)
Lemuriformes_a	ANCESTRAL SPECIES	62	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741.s	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Coquerels sifaka	MODERN SPECIES	262			ACAA2 (ENSPCOG00000021233)	LIPG (ENSPCOG00000017489)	ENSPCOG00000024759	C18orf32 (ENSPCOG00000028796)	DYM (ENSPCOG00000010198)	SMAD7 (ENSPCOG00000003237)	CTIF (ENSPCOG00000013391)	ZBTB7C (ENSPCOG00000019918)	SMAD2 (ENSPCOG00000000934)	SKOR2 (ENSPCOG00000016973) #16	IER3IP1 (ENSPCOG00000000443) #17	HDHD2 (ENSPCOG00000024401) #18	KATNAL2 (ENSPCOG00000013440) #21	PIAS2 (ENSPCOG00000028397) #22	ST8SIA5 (ENSPCOG00000021186) #23	LOXHD1 (ENSPCOG00000027350) #24	RNF165 (ENSPCOG00000017842) #25	C18orf25 (ENSPCOG00000026561) #26	HAUS1 (ENSPCOG00000024124) #27	ATP5F1A (ENSPCOG00000017027) #28	PSTPIP2 (ENSPCOG00000021273) #29	EPG5 (ENSPCOG00000026516) #30	SIGLEC15 (ENSPCOG00000026160) #31	SLC14A1 (ENSPCOG00000027560) #32	SLC14A2 (ENSPCOG00000003875) #33	SETBP1 (ENSPCOG00000022384) #34
Greater bamboo lemur	MODERN SPECIES	606	MYO5B (ENSPSMG00000019098)	ACAA2 (ENSPSMG00000018945)	LIPG (ENSPSMG00000018901)	ENSPSMG00000018857	ENSPSMG00000018846	DYM (ENSPSMG00000018799)	SMAD7 (ENSPSMG00000018729)	CTIF (ENSPSMG00000018691)	ZBTB7C (ENSPSMG00000018657)	SMAD2 (ENSPSMG00000018402)	SKOR2 (ENSPSMG00000018268) #16	ENSPSMG00000018261 #17	HDHD2 (ENSPSMG00000018254) #18	ENSPSMG00000018244 #19	KATNAL2 (ENSPSMG00000018239) #21	PIAS2 (ENSPSMG00000018197) #22	ST8SIA5 (ENSPSMG00000018127) #23
Bushbaby	MODERN SPECIES	127	MBD1 (ENSOGAG00000003784)	ENSOGAG00000003781	MYO5B (ENSOGAG00000016529)	ACAA2 (ENSOGAG00000016527)	LIPG (ENSOGAG00000016524)	ENSOGAG00000029213	DYM (ENSOGAG00000013935)	SMAD7 (ENSOGAG00000013932)	CTIF (ENSOGAG00000013927)	ZBTB7C (ENSOGAG00000000444)	SMAD2 (ENSOGAG00000000443)	SKOR2 (ENSOGAG00000032696) #16	IER3IP1 (ENSOGAG00000016626) #17	HDHD2 (ENSOGAG00000016619) #18	KATNAL2 (ENSOGAG00000016612) #21	PIAS2 (ENSOGAG00000012636) #22	ST8SIA5 (ENSOGAG00000012633) #23	LOXHD1 (ENSOGAG00000012621) #24	RNF165 (ENSOGAG00000025147) #25	C18orf25 (ENSOGAG00000005093) #26	HAUS1 (ENSOGAG00000005096) #27	ENSOGAG00000026684 #28	PSTPIP2 (ENSOGAG00000007141) #29	ENSOGAG00000029113 #30	SIGLEC15 (ENSOGAG00000024686) #31	SLC14A1 (ENSOGAG00000016407) #32	SLC14A2 (ENSOGAG00000016395) #33	SETBP1 (ENSOGAG00000010412) #34	ENSOGAG00000029062	SYT4 (ENSOGAG00000003595)	RIT2 (ENSOGAG00000002055)
Euarchontoglires_A	ANCESTRAL SPECIES	22	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT00390000002428.a.g.b #19	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Tree shrew	MODERN SPECIES	1407																ENSTBEG00000014666 #22	ST8SIA5 (ENSTBEG00000014559) #23
Glires	ANCESTRAL SPECIES	23	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT00390000002428.a.g.b #19	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Lagomorpha	ANCESTRAL SPECIES	29	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.a.a.a.b.k	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT00390000002428.a.g.b #19	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Rabbit	MODERN SPECIES	20	ENSOCUG00000012485	ENSOCUG00000027094	ENSOCUG00000038051	DYM (ENSOCUG00000015851)	SMAD7 (ENSOCUG00000024309)	CTIF (ENSOCUG00000024842)	ENSOCUG00000026631	ZBTB7C (ENSOCUG00000022348)	SMAD2 (ENSOCUG00000011290)	ENSOCUG00000027573 #16	IER3IP1 (ENSOCUG00000012555) #17	HDHD2 (ENSOCUG00000006979) #18	ENSOCUG00000035984 #19	ENSOCUG00000006940 #19	KATNAL2 (ENSOCUG00000006971) #21	PIAS2 (ENSOCUG00000006900) #22	ENSOCUG00000033989 #24	RNF165 (ENSOCUG00000011801) #25	C18orf25 (ENSOCUG00000009573) #26	HAUS1 (ENSOCUG00000017483) #27	ENSOCUG00000003967 #28	PSTPIP2 (ENSOCUG00000000324) #29	EPG5 (ENSOCUG00000003950) #30	SIGLEC15 (ENSOCUG00000023340) #31	SLC14A1 (ENSOCUG00000006758) #32	ENSOCUG00000006749 #33	SETBP1 (ENSOCUG00000009706) #34	SYT4 (ENSOCUG00000009669)	RIT2 (ENSOCUG00000003652)	PIK3C3 (ENSOCUG00000009451)	ENSOCUG00000039403
Pika	MODERN SPECIES	4011																ENSOPRG00000006243 #22
Rodentia	ANCESTRAL SPECIES	23	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00390000002428.a.g.b #19	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Rodentia_A	ANCESTRAL SPECIES	23	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00390000002428.a.g.b #19	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Hystricomorpha	ANCESTRAL SPECIES	32	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029.q #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Hystricomorpha_a	ANCESTRAL SPECIES	26	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029.q #27	ENSGT00390000006029.p #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402
Guinea pig	DUPLICATION
Guinea pig	MODERN SPECIES	14	CFAP53 (ENSCPOG00000001668)	MYO5B (ENSCPOG00000014213)	ACAA2 (ENSCPOG00000004734)	LIPG (ENSCPOG00000008890)	ENSCPOG00000019337	C18orf32 (ENSCPOG00000034745)	DYM (ENSCPOG00000013484)	SMAD7 (ENSCPOG00000030295)	CTIF (ENSCPOG00000001049)	ZBTB7C (ENSCPOG00000040464)	SMAD2 (ENSCPOG00000013398)	SKOR2 (ENSCPOG00000021920) #16	IER3IP1 (ENSCPOG00000040200) #17	HDHD2 (ENSCPOG00000030325) #18	KATNAL2 (ENSCPOG00000008150) #21	ENSCPOG00000003067 #22	ST8SIA5 (ENSCPOG00000030161) #23	LOXHD1 (ENSCPOG00000009824) #24	RNF165 (ENSCPOG00000009298) #25	HAUS1 (ENSCPOG00000012723) #27	ATP5F1A (ENSCPOG00000012719) #28	PSTPIP2 (ENSCPOG00000004876) #29	EPG5 (ENSCPOG00000012114) #30	SLC14A1 (ENSCPOG00000007979) #32	ENSCPOG00000007976 #33	SETBP1 (ENSCPOG00000011164) #34	SYT4 (ENSCPOG00000009941)	RIT2 (ENSCPOG00000009357)	PIK3C3 (ENSCPOG00000004375)	ENSCPOG00000040621	CELF4 (ENSCPOG00000035956)
Guinea pig	MODERN SPECIES		HACL1 (ENSCPOG00000024203)	COLQ (ENSCPOG00000002476)	EAF1 (ENSCPOG00000031143)	METTL6 (ENSCPOG00000037082)	ABHD6 (ENSCPOG00000037337)	RPP14 (ENSCPOG00000004281)	HTD2 (ENSCPOG00000036094)	PXK (ENSCPOG00000006707)	PDHB (ENSCPOG00000006713)	KCTD6 (ENSCPOG00000006719)	ACOX2 (ENSCPOG00000006721)	FAM107A (ENSCPOG00000014689)	FAM3D (ENSCPOG00000014686)	CFAP20DC (ENSCPOG00000010572)	FHIT (ENSCPOG00000014924)	ENSCPOG00000032909 #22	PTPRG (ENSCPOG00000003197)	C3orf14 (ENSCPOG00000006026)	FEZF2 (ENSCPOG00000001697)	ENSCPOG00000001699	SYNPR (ENSCPOG00000012817)	SNTN (ENSCPOG00000012821)	ENSCPOG00000021409	THOC7 (ENSCPOG00000007930)	ATXN7 (ENSCPOG00000002924)	PSMD6 (ENSCPOG00000006160)	PRICKLE2 (ENSCPOG00000031153)	ADAMTS9 (ENSCPOG00000004877)	MAGI1 (ENSCPOG00000002169)	ENSCPOG00000013562	DYNC1LI1 (ENSCPOG00000011613)
Hystricomorpha_b	ANCESTRAL SPECIES	21	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029.q #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Long-tailed chinchilla	DUPLICATION
Long-tailed chinchilla	MODERN SPECIES	109	ENSCLAG00000008597	ENSCLAG00000007196	LIPG (ENSCLAG00000011863)	ENSCLAG00000010369	ENSCLAG00000008914	C18orf32 (ENSCLAG00000008711)	DYM (ENSCLAG00000008080)	SMAD7 (ENSCLAG00000007063)	CTIF (ENSCLAG00000008174)	ZBTB7C (ENSCLAG00000012082)	SMAD2 (ENSCLAG00000011258)	SKOR2 (ENSCLAG00000012544) #16	IER3IP1 (ENSCLAG00000007652) #17	HDHD2 (ENSCLAG00000006391) #18	KATNAL2 (ENSCLAG00000013657) #21	ENSCLAG00000011621 #22	ST8SIA5 (ENSCLAG00000012639) #23	LOXHD1 (ENSCLAG00000011718) #24	RNF165 (ENSCLAG00000009534) #25	C18orf25 (ENSCLAG00000008611) #26	HAUS1 (ENSCLAG00000012155) #27	ATP5F1A (ENSCLAG00000014431) #28	ENSCLAG00000015055	PSTPIP2 (ENSCLAG00000011006) #29	EPG5 (ENSCLAG00000009230) #30	SIGLEC15 (ENSCLAG00000007394) #31	SLC14A1 (ENSCLAG00000007299) #32	SLC14A2 (ENSCLAG00000012015) #33	SETBP1 (ENSCLAG00000010509) #34	ENSCLAG00000008619	SYT4 (ENSCLAG00000008440)
Long-tailed chinchilla	MODERN SPECIES	127	SEC22C (ENSCLAG00000016050)	VIPR1 (ENSCLAG00000016513)	LYZL4 (ENSCLAG00000016944)	CCK (ENSCLAG00000017113)	TRAK1 (ENSCLAG00000014205)	ULK4 (ENSCLAG00000015979)	CTNNB1 (ENSCLAG00000016464)	ZNF621 (ENSCLAG00000016834)	RPL14 (ENSCLAG00000016120)	ENTPD3 (ENSCLAG00000016343)	EIF1B (ENSCLAG00000016040)	MYRIP (ENSCLAG00000016112)	ENSCLAG00000014655	ENSCLAG00000015318	SLC25A38 (ENSCLAG00000015393)	ENSCLAG00000016657 #22
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	44	ENSODEG00000018393	DYM (ENSODEG00000018486)	SMAD7 (ENSODEG00000018424)	CTIF (ENSODEG00000018390)	ZBTB7C (ENSODEG00000018417)	SMAD2 (ENSODEG00000018373)	ENSODEG00000018377	ENSODEG00000018340	ENSODEG00000018367	SKOR2 (ENSODEG00000018363) #16	IER3IP1 (ENSODEG00000018375) #17	HDHD2 (ENSODEG00000018388) #18	KATNAL2 (ENSODEG00000018481) #21	ENSODEG00000018457	ENSODEG00000020536	ENSODEG00000018432 #22	ST8SIA5 (ENSODEG00000018352) #23	ENSODEG00000020498	LOXHD1 (ENSODEG00000018482) #24	RNF165 (ENSODEG00000018412) #25	C18orf25 (ENSODEG00000018458) #26	ENSODEG00000018366 #27	ATP5F1A (ENSODEG00000018359) #28	ENSODEG00000020534	ENSODEG00000018334	PSTPIP2 (ENSODEG00000018461) #29	EPG5 (ENSODEG00000018404) #30	SIGLEC15 (ENSODEG00000018459) #31	SLC14A1 (ENSODEG00000018379) #32	SLC14A2 (ENSODEG00000018353) #33	SETBP1 (ENSODEG00000018419) #34
Degu	MODERN SPECIES	65	ENSODEG00000006806	MTFR2 (ENSODEG00000006976)	PDE7B (ENSODEG00000007023)	ENSODEG00000007137	ENSODEG00000006953	ENSODEG00000019597	ENSODEG00000008684	HBS1L (ENSODEG00000008959)	ALDH8A1 (ENSODEG00000007514)	ENSODEG00000006585	SLC2A12 (ENSODEG00000007816)	ENSODEG00000006582	TCF21 (ENSODEG00000007820)	ENSODEG00000019436	FNDC1 (ENSODEG00000007591)	ENSODEG00000009689 #22	TAGAP (ENSODEG00000007094)	RSPH3 (ENSODEG00000006702)	ENSODEG00000007168	ENSODEG00000006754	ENSODEG00000009659	SYTL3 (ENSODEG00000007102)	ENSODEG00000007702	ENSODEG00000007461	TULP4 (ENSODEG00000007452)	ENSODEG00000019398	ENSODEG00000008981	SERAC1 (ENSODEG00000008208)	SYNJ2 (ENSODEG00000007709)	SNX9 (ENSODEG00000005916)	ENSODEG00000019604
Degu	MODERN SPECIES	185	ENSODEG00000004409	ENSODEG00000004390	ENSODEG00000004382	ENSODEG00000004245	NRP1 (ENSODEG00000004113)	PARD3 (ENSODEG00000004622)	ENSODEG00000004486	ENSODEG00000004461	ENSODEG00000004444	ENSODEG00000004428	ENSODEG00000004400	MPP7 (ENSODEG00000004278)	ODAD2 (ENSODEG00000004199)	MKX (ENSODEG00000004159)	ENSODEG00000004150	ENSODEG00000004139 #22
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	31	ENSHGLG00000002579	ENSHGLG00000002181	ENSHGLG00000002863	ENSHGLG00000035843	ENSHGLG00000046679	ENSHGLG00000001046	ENSHGLG00000000969	UXT (ENSHGLG00000000945)	ELK1 (ENSHGLG00000000926)	CFP (ENSHGLG00000000905)	TIMP1 (ENSHGLG00000000794)	SYN1 (ENSHGLG00000000779)	ENSHGLG00000000754	ENSHGLG00000043935	ZNF41 (ENSHGLG00000049389)	ENSHGLG00000046479 #22	ENSHGLG00000001450	ENSHGLG00000045718	ENSHGLG00000044888	USP11 (ENSHGLG00000001371)	CDK16 (ENSHGLG00000001209)	UBA1 (ENSHGLG00000000529)	RBM10 (ENSHGLG00000000890)	Ndufb11 (ENSHGLG00000045173)	Rgn (ENSHGLG00000000674)	ENSHGLG00000000616	RP2 (ENSHGLG00000047413)	ENSHGLG00000020120	SLC9A7 (ENSHGLG00000007119)	CHST7 (ENSHGLG00000006779)	ENSHGLG00000045686
Naked mole-rat female	MODERN SPECIES	9	LIPG (ENSHGLG00000010224)	ENSHGLG00000047452	ENSHGLG00000036153	ENSHGLG00000009081	ENSHGLG00000015030	ENSHGLG00000040505	ENSHGLG00000048272	ENSHGLG00000042101	ENSHGLG00000031912	SMAD2 (ENSHGLG00000008711)	SKOR2 (ENSHGLG00000035792) #16	ENSHGLG00000048898 #17	HDHD2 (ENSHGLG00000010130) #18	ENSHGLG00000034217 #21	ENSHGLG00000040167	PIAS2 (ENSHGLG00000015588) #22	ST8SIA5 (ENSHGLG00000040367) #23	ENSHGLG00000006211 #24	RNF165 (ENSHGLG00000035767) #25	C18orf25 (ENSHGLG00000041108) #26	ENSHGLG00000036445 #28	ENSHGLG00000036850 #27	ENSHGLG00000009522 #28	PSTPIP2 (ENSHGLG00000005740) #29	SLC14A1 (ENSHGLG00000007316) #32	ENSHGLG00000005880 #33	ENSHGLG00000046959 #33	ENSHGLG00000033588	ENSHGLG00000040364 #34	ENSHGLG00000001864	ENSHGLG00000041163
Sciuridae	ANCESTRAL SPECIES	31	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00390000002428.a.g.b #19	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846.z #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Marmotini	ANCESTRAL SPECIES	31	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT01030000236530	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846.z #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Marmotini_b	ANCESTRAL SPECIES	137																ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846.z #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Arctic ground squirrel	MODERN SPECIES	622																PIAS2 (ENSUPAG00010010887) #22	ST8SIA5 (ENSUPAG00010010865) #23	LOXHD1 (ENSUPAG00010010785) #24	ENSUPAG00010010781 #25	ENSUPAG00010010778	C18orf25 (ENSUPAG00010010766) #26	ENSUPAG00010010762	ENSUPAG00010010754 #27	ATP5F1A (ENSUPAG00010010740) #28
Squirrel	MODERN SPECIES	117																PIAS2 (ENSSTOG00000014612) #22	ST8SIA5 (ENSSTOG00000027926) #23	LOXHD1 (ENSSTOG00000023476) #24	RNF165 (ENSSTOG00000023324) #25	C18orf25 (ENSSTOG00000006376) #26	HAUS1 (ENSSTOG00000003708) #27	ATP5F1A (ENSSTOG00000003680) #28	PSTPIP2 (ENSSTOG00000003652) #29	EPG5 (ENSSTOG00000021864) #30	SIGLEC15 (ENSSTOG00000002555) #31	SLC14A1 (ENSSTOG00000002535) #32	SLC14A2 (ENSSTOG00000002511) #33	SETBP1 (ENSSTOG00000002563) #34	SYT4 (ENSSTOG00000009215)	RIT2 (ENSSTOG00000027357)	PIK3C3 (ENSSTOG00000013565)
Alpin marmot	MODERN SPECIES	10	MBD1 (ENSMMMG00000005802)	CFAP53 (ENSMMMG00000005890)	MYO5B (ENSMMMG00000005915)	ACAA2 (ENSMMMG00000006091)	LIPG (ENSMMMG00000006111)	ENSMMMG00000006135	C18orf32 (ENSMMMG00000006157)	DYM (ENSMMMG00000006170)	SMAD7 (ENSMMMG00000006202)	CTIF (ENSMMMG00000006232)	ZBTB7C (ENSMMMG00000006278)	SMAD2 (ENSMMMG00000006290)	ENSMMMG00000006338	HDHD2 (ENSMMMG00000006342) #18	KATNAL2 (ENSMMMG00000006351) #21	PIAS2 (ENSMMMG00000006515) #22	ST8SIA5 (ENSMMMG00000006633) #23	LOXHD1 (ENSMMMG00000006669) #24	RNF165 (ENSMMMG00000006757) #25	C18orf25 (ENSMMMG00000006777) #26	HAUS1 (ENSMMMG00000006810) #27	ATP5F1A (ENSMMMG00000006823) #28	PSTPIP2 (ENSMMMG00000006839) #29	EPG5 (ENSMMMG00000006854) #30	SIGLEC15 (ENSMMMG00000006905) #31	SLC14A1 (ENSMMMG00000006914) #32	SLC14A2 (ENSMMMG00000006939) #33	SETBP1 (ENSMMMG00000006996) #34	SYT4 (ENSMMMG00000007022)	RIT2 (ENSMMMG00000007046)	ENSMMMG00000007059
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	4	MYO5B (ENSSVLG00005020740)	ACAA2 (ENSSVLG00005020577)	LIPG (ENSSVLG00005020493)	ENSSVLG00005020364	ENSSVLG00005020326	DYM (ENSSVLG00005019977)	SMAD7 (ENSSVLG00005019787)	CTIF (ENSSVLG00005019619)	ZBTB7C (ENSSVLG00005019433)	ENSSVLG00005019379	SKOR2 (ENSSVLG00005019180) #16	ENSSVLG00005019150 #17	HDHD2 (ENSSVLG00005019073) #18	ENSSVLG00005019019 #19	KATNAL2 (ENSSVLG00005018737) #21	ENSSVLG00005018588 #22	ST8SIA5 (ENSSVLG00005018346) #23	LOXHD1 (ENSSVLG00005016724) #24	RNF165 (ENSSVLG00005016476) #25	C18orf25 (ENSSVLG00005016394) #26	HAUS1 (ENSSVLG00005016339) #27	ATP5F1A (ENSSVLG00005016277) #28	ENSSVLG00005016239	PSTPIP2 (ENSSVLG00005016011) #29	EPG5 (ENSSVLG00005015968) #30	SIGLEC15 (ENSSVLG00005015863) #31	SLC14A1 (ENSSVLG00005015590) #32	ENSSVLG00005015418 #33	SETBP1 (ENSSVLG00005015356) #34	ENSSVLG00005015263	SYT4 (ENSSVLG00005021147)
Eurasian red squirrel	MODERN SPECIES	5	ENSSVLG00005021117	ENSSVLG00005021181	ENSSVLG00005021214	ENSSVLG00005021258	ENSSVLG00005021298	ENSSVLG00005021318	ENSSVLG00005021345	ENSSVLG00005021372	ENSSVLG00005021434	ENSSVLG00005021520	ENSSVLG00005021533	ENSSVLG00005021576	ENSSVLG00005021600	ENSSVLG00005021630	ENSSVLG00005021725	ENSSVLG00005021847 #22	ENSSVLG00005021855	ENSSVLG00005021866	ENSSVLG00005021916	ENSSVLG00005021930	ENSSVLG00005021944	ENSSVLG00005021980	ENSSVLG00005022012	ENSSVLG00005022087	ENSSVLG00005022131	ENSSVLG00005022162	ENSSVLG00005022225	ENSSVLG00005022258	ENSSVLG00005022282	ENSSVLG00005022318	ENSSVLG00005022349
Rodentia_B	ANCESTRAL SPECIES	27	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Kangaroo rat	MODERN SPECIES	344																Pias2 (ENSDORG00000013246) #22	St8sia5 (ENSDORG00000014254) #23	ENSDORG00000014253 #24	Rnf165 (ENSDORG00000008058) #25	8030462N17Rik (ENSDORG00000004172) #26	Haus1 (ENSDORG00000023830) #27	Atp5a1 (ENSDORG00000009630) #28	Pstpip2 (ENSDORG00000003911) #29	Epg5 (ENSDORG00000013620) #30	ENSDORG00000013618	Slc14a1 (ENSDORG00000014939) #32	ENSDORG00000014932 #33	Setbp1 (ENSDORG00000006424) #34	Syt4 (ENSDORG00000012271)	Rit2 (ENSDORG00000009400)	Pik3c3 (ENSDORG00000014804)
Myomorpha	ANCESTRAL SPECIES	35	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT01030000234510.a.a.b	ENSGT01030000234510.a.a.a.a.a.a	ENSGT00390000002368
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	60	BC031181 (ENSJJAG00000013965)	Dym (ENSJJAG00000000543)	ENSJJAG00000011899	ENSJJAG00000014372	ENSJJAG00000011224	Smad7 (ENSJJAG00000017342)	Ctif (ENSJJAG00000013706)	ENSJJAG00000000639	Zbtb7c (ENSJJAG00000005484)	ENSJJAG00000000783	Smad2 (ENSJJAG00000021902)	Skor2 (ENSJJAG00000013235) #16	ENSJJAG00000009768 #17	Hdhd2 (ENSJJAG00000020515) #18	Katnal2 (ENSJJAG00000013360) #21	ENSJJAG00000021561 #22	St8sia5 (ENSJJAG00000023613) #23	Loxhd1 (ENSJJAG00000012049) #24	Rnf165 (ENSJJAG00000014596) #25	8030462N17Rik (ENSJJAG00000015948) #26	ENSJJAG00000014908 #27	ENSJJAG00000022136 #28	Pstpip2 (ENSJJAG00000011600) #29	Epg5 (ENSJJAG00000008036) #30	Siglec15 (ENSJJAG00000011775) #31	Slc14a1 (ENSJJAG00000009670) #32	ENSJJAG00000021572 #33	Setbp1 (ENSJJAG00000004320) #34	ENSJJAG00000000736	Mc2r (ENSJJAG00000000906)	Mc5r (ENSJJAG00000012730)
Lesser Egyptian jerboa	MODERN SPECIES	66	ENSJJAG00000019056	Ccdc171 (ENSJJAG00000020916)	ENSJJAG00000015360	Snapc3 (ENSJJAG00000018408)	Ttc39b (ENSJJAG00000004238)	ENSJJAG00000010564	ENSJJAG00000015519	Cer1 (ENSJJAG00000023511)	Zdhhc21 (ENSJJAG00000002851)	Nfib (ENSJJAG00000013052)	ENSJJAG00000010432	Mpdz (ENSJJAG00000012097)	Lurap1l (ENSJJAG00000014520)	Tyrp1 (ENSJJAG00000015009)	ENSJJAG00000010326	ENSJJAG00000023453 #22
Muroidea	ANCESTRAL SPECIES	13	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT01030000234510.a.a.b	ENSGT01030000234510.a.a.a.a.a.a	ENSGT00390000002368
Upper Galilee mountains blind mole rat	MODERN SPECIES	1888						Dym (ENSNGAG00000020852)	ENSNGAG00000001549	Smad7 (ENSNGAG00000004962)	Ctif (ENSNGAG00000011452)	Zbtb7c (ENSNGAG00000012022)	Smad2 (ENSNGAG00000013343)	Skor2 (ENSNGAG00000018430) #16	ENSNGAG00000020722 #17	Hdhd2 (ENSNGAG00000000250) #18	Katnal2 (ENSNGAG00000010954) #21	Pias2 (ENSNGAG00000010511) #22	St8sia5 (ENSNGAG00000017269) #23	Loxhd1 (ENSNGAG00000020158) #24	Rnf165 (ENSNGAG00000012965) #25	8030462N17Rik (ENSNGAG00000014428) #26	Haus1 (ENSNGAG00000001553) #27	Atp5a1 (ENSNGAG00000009807) #28	Pstpip2 (ENSNGAG00000018122) #29	Epg5 (ENSNGAG00000005612) #30	Siglec15 (ENSNGAG00000013867) #31	Slc14a1 (ENSNGAG00000014056) #32	ENSNGAG00000015050 #33	Setbp1 (ENSNGAG00000016368) #34	Mc2r (ENSNGAG00000014364)	Mc5r (ENSNGAG00000008073)	Rnmt (ENSNGAG00000014958)
Muroidea_A	ANCESTRAL SPECIES	18	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00950000183211.a.b	ENSGT00530000063631.a	ENSGT00390000011362
Cricetidae	ANCESTRAL SPECIES	18	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846.u #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a.e #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00950000183211.a.b	ENSGT00530000063631.a	ENSGT00390000011362
Cricetinae	ANCESTRAL SPECIES	14	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846.u #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a.e #32	ENSGT00390000018729.a.b #33
Chinese hamster chok1gshd	MODERN SPECIES	314											Zbtb7c (ENSCGRG00001005320)	Smad2 (ENSCGRG00001006348)	Skor2 (ENSCGRG00001007925) #16	Hdhd2 (ENSCGRG00001009445) #18	Katnal2 (ENSCGRG00001010923) #21	Pias2 (ENSCGRG00001023617) #22	St8sia5 (ENSCGRG00001004611) #23	Loxhd1 (ENSCGRG00001009440) #24	Rnf165 (ENSCGRG00001011050) #25	8030462N17Rik (ENSCGRG00001011465) #26	Haus1 (ENSCGRG00001012089) #27	Atp5a1 (ENSCGRG00001012335) #28	Pstpip2 (ENSCGRG00001012933) #29	Epg5 (ENSCGRG00001013764) #30	Siglec15 (ENSCGRG00001014278) #31	ENSCGRG00001014534	Slc14a1 (ENSCGRG00001014682) #32	Slc14a2 (ENSCGRG00001015350) #33	ENSCGRG00001002557	Setbp1 (ENSCGRG00001003049) #34	ENSCGRG00001005434
Golden Hamster	MODERN SPECIES	680	Myo5b (ENSMAUG00000000930)	Acaa2 (ENSMAUG00000018671)	Lipg (ENSMAUG00000000351)	Rpl17 (ENSMAUG00000015927)	BC031181 (ENSMAUG00000019483)	Dym (ENSMAUG00000017721)	ENSMAUG00000020878	Smad7 (ENSMAUG00000020326)	Ctif (ENSMAUG00000000656)	Zbtb7c (ENSMAUG00000000374)	Smad2 (ENSMAUG00000006737)	Skor2 (ENSMAUG00000016006) #16	ENSMAUG00000012040 #17	Hdhd2 (ENSMAUG00000019526) #18	Katnal2 (ENSMAUG00000019836) #21	Pias2 (ENSMAUG00000014565) #22	St8sia5 (ENSMAUG00000011966) #23	Loxhd1 (ENSMAUG00000010353) #24	Rnf165 (ENSMAUG00000017550) #25	8030462N17Rik (ENSMAUG00000006561) #26	Haus1 (ENSMAUG00000009723) #27	Atp5f1a (ENSMAUG00000019838) #28	Pstpip2 (ENSMAUG00000014774) #29	Epg5 (ENSMAUG00000019707) #30	Siglec15 (ENSMAUG00000000352) #31	Slc14a1 (ENSMAUG00000014121) #32	ENSMAUG00000018876 #33	ENSMAUG00000006240	ENSMAUG00000014437	Toporsl (ENSMAUG00000021881)	Or13c3 (ENSMAUG00000004828)
Cricetidae_B	ANCESTRAL SPECIES	15	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846.u #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a.e #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00950000183211.a.b	ENSGT00530000063631.a	ENSGT00390000011362
Northern American deer mouse	MODERN SPECIES	10	Myo5b (ENSPEMG00000020539)	Acaa2 (ENSPEMG00000022034)	ENSPEMG00000025726	ENSPEMG00000028900	Lipg (ENSPEMG00000021868)	Rpl17 (ENSPEMG00000001520)	Dym (ENSPEMG00000020826)	Smad7 (ENSPEMG00000021331)	Ctif (ENSPEMG00000022746)	Zbtb7c (ENSPEMG00000020629)	Smad2 (ENSPEMG00000020383)	Skor2 (ENSPEMG00000022190) #16	ENSPEMG00000026193 #17	Hdhd2 (ENSPEMG00000020912) #18	Katnal2 (ENSPEMG00000021096) #21	Pias2 (ENSPEMG00000022220) #22	St8sia5 (ENSPEMG00000022119) #23	Loxhd1 (ENSPEMG00000022919) #24	ENSPEMG00000029031 #25	8030462N17Rik (ENSPEMG00000010341) #26	Haus1 (ENSPEMG00000021388) #27	Atp5a1 (ENSPEMG00000022004) #28	Pstpip2 (ENSPEMG00000022379) #29	Epg5 (ENSPEMG00000022153) #30	Siglec15 (ENSPEMG00000024146) #31	ENSPEMG00000028869	Slc14a1 (ENSPEMG00000008835) #32	ENSPEMG00000022112 #33	Setbp1 (ENSPEMG00000021869) #34	ENSPEMG00000006471	Pard6g (ENSPEMG00000025457)
Prairie vole	MODERN SPECIES	5	ENSMOCG00000008152	Myo5b (ENSMOCG00000022368)	Acaa2 (ENSMOCG00000004236)	Lipg (ENSMOCG00000020738)	Rpl17 (ENSMOCG00000012741)	BC031181 (ENSMOCG00000012446)	Dym (ENSMOCG00000022593)	Smad7 (ENSMOCG00000001269)	Ctif (ENSMOCG00000020507)	Zbtb7c (ENSMOCG00000017640)	Smad2 (ENSMOCG00000017648)	Skor2 (ENSMOCG00000018264) #16	ENSMOCG00000009073 #17	Hdhd2 (ENSMOCG00000008063) #18	Katnal2 (ENSMOCG00000011716) #21	Pias2 (ENSMOCG00000015605) #22	St8sia5 (ENSMOCG00000011361) #23	Loxhd1 (ENSMOCG00000016732) #24	ENSMOCG00000019837 #25	8030462N17Rik (ENSMOCG00000000844) #26	Haus1 (ENSMOCG00000011366) #27	Atp5a1 (ENSMOCG00000009175) #28	Pstpip2 (ENSMOCG00000006361) #29	Epg5 (ENSMOCG00000015567) #30	Siglec15 (ENSMOCG00000007709) #31	ENSMOCG00000002421 #32	Slc14a2 (ENSMOCG00000013965) #33	Setbp1 (ENSMOCG00000021557) #34	Pard6g (ENSMOCG00000019881)	ENSMOCG00000019582	Rbfa (ENSMOCG00000018963)
Murinae	ANCESTRAL SPECIES	17	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00950000183211.a.b	ENSGT00530000063631.a	ENSGT00390000011362
Rat	MODERN SPECIES	9	Mbd1 (ENSRNOG00000024104)	Myo5b (ENSRNOG00000014104)	Acaa2 (ENSRNOG00000013766)	Lipg (ENSRNOG00000018694)	Slc25a6 (ENSRNOG00000042387)	Rpl17 (ENSRNOG00000018680)	Dym (ENSRNOG00000018425)	Smad7 (ENSRNOG00000018359)	Ctif (ENSRNOG00000018342)	ENSRNOG00000067472	Zbtb7c (ENSRNOG00000047924)	Smad2 (ENSRNOG00000018140)	Skor2 (ENSRNOG00000018006) #16	Ier3ip1 (ENSRNOG00000043171) #18	Katnal2 (ENSRNOG00000017788) #21	Pias2 (ENSRNOG00000017493) #22	St8sia5 (ENSRNOG00000022691) #23	Loxhd1 (ENSRNOG00000017410) #24	Rnf165 (ENSRNOG00000048824) #25	RGD1308601 (ENSRNOG00000017215) #26	ENSRNOG00000063575	Haus1 (ENSRNOG00000017067) #27	Atp5f1a (ENSRNOG00000017032) #28	Pstpip2 (ENSRNOG00000016987) #29	Epg5 (ENSRNOG00000052894) #30	Siglec15 (ENSRNOG00000033588) #31	Slc14a1 (ENSRNOG00000016753) #32	Slc14a2 (ENSRNOG00000061714) #33	Setbp1 (ENSRNOG00000016208) #34	ENSRNOG00000065450	Pard6g (ENSRNOG00000055157)
Mus	ANCESTRAL SPECIES	19	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648.c #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00950000183211.a.b	ENSGT00530000063631.a	ENSGT00390000011362
Shrew mouse	MODERN SPECIES	6	Cfap53 (MGP_PahariEiJ_G0019129)	Myo5b (MGP_PahariEiJ_G0019130)	Acaa2 (MGP_PahariEiJ_G0019131)	Lipg (MGP_PahariEiJ_G0019132)	Rpl17 (MGP_PahariEiJ_G0019133)	BC031181 (MGP_PahariEiJ_G0019134)	Dym (MGP_PahariEiJ_G0019135)	Smad7 (MGP_PahariEiJ_G0019136)	Ctif (MGP_PahariEiJ_G0019137)	Zbtb7c (MGP_PahariEiJ_G0019138)	Smad2 (MGP_PahariEiJ_G0019139)	Skor2 (MGP_PahariEiJ_G0019140) #16	MGP_PahariEiJ_G0019141 #17	Hdhd2 (MGP_PahariEiJ_G0019142) #18	Katnal2 (MGP_PahariEiJ_G0019143) #21	Pias2 (MGP_PahariEiJ_G0019144) #22	MGP_PahariEiJ_G0019145	St8sia5 (MGP_PahariEiJ_G0019146) #23	MGP_PahariEiJ_G0019147 #24	Rnf165 (MGP_PahariEiJ_G0019148) #25	8030462N17Rik (MGP_PahariEiJ_G0019149) #26	Haus1 (MGP_PahariEiJ_G0019150) #27	Atp5a1 (MGP_PahariEiJ_G0019151) #28	Pstpip2 (MGP_PahariEiJ_G0019152) #29	Epg5 (MGP_PahariEiJ_G0019153) #30	Siglec15 (MGP_PahariEiJ_G0019154) #31	Slc14a1 (MGP_PahariEiJ_G0019155) #32	Slc14a2 (MGP_PahariEiJ_G0019156) #33	MGP_PahariEiJ_G0019157	Setbp1 (MGP_PahariEiJ_G0019158) #34	Pard6g (MGP_PahariEiJ_G0019159)
Mus_A	ANCESTRAL SPECIES	19	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648.c #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00950000183211.a.b	ENSGT01100000265037	ENSGT00530000063631.a
Ryukyu mouse	MODERN SPECIES	9	Cfap53 (MGP_CAROLIEiJ_G0022400)	Myo5b (MGP_CAROLIEiJ_G0022401)	Acaa2 (MGP_CAROLIEiJ_G0022402)	Lipg (MGP_CAROLIEiJ_G0022403)	Rpl17 (MGP_CAROLIEiJ_G0022404)	BC031181 (MGP_CAROLIEiJ_G0022405)	Dym (MGP_CAROLIEiJ_G0022406)	Smad7 (MGP_CAROLIEiJ_G0022407)	Ctif (MGP_CAROLIEiJ_G0022408)	Zbtb7c (MGP_CAROLIEiJ_G0022409)	Smad2 (MGP_CAROLIEiJ_G0022410)	Skor2 (MGP_CAROLIEiJ_G0022411) #16	MGP_CAROLIEiJ_G0022412 #17	Hdhd2 (MGP_CAROLIEiJ_G0022413) #18	Katnal2 (MGP_CAROLIEiJ_G0022414) #21	Pias2 (MGP_CAROLIEiJ_G0022415) #22	MGP_CAROLIEiJ_G0022416	St8sia5 (MGP_CAROLIEiJ_G0022417) #23	Loxhd1 (MGP_CAROLIEiJ_G0022418) #24	Rnf165 (MGP_CAROLIEiJ_G0022419) #25	8030462N17Rik (MGP_CAROLIEiJ_G0022420) #26	Haus1 (MGP_CAROLIEiJ_G0022421) #27	Atp5a1 (MGP_CAROLIEiJ_G0022422) #28	Pstpip2 (MGP_CAROLIEiJ_G0022423) #29	MGP_CAROLIEiJ_G0022424 #30	Siglec15 (MGP_CAROLIEiJ_G0022425) #31	Slc14a1 (MGP_CAROLIEiJ_G0022426) #32	Slc14a2 (MGP_CAROLIEiJ_G0022427) #33	MGP_CAROLIEiJ_G0022428	Setbp1 (MGP_CAROLIEiJ_G0022429) #34	Pard6g (MGP_CAROLIEiJ_G0022430)
Mus_B	ANCESTRAL SPECIES	19	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648.c #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00950000183010.a.b.a.a.a.a.a.b.l.d	ENSGT00940000158784 #34	ENSGT00950000183211.a.b	ENSGT01100000265037
Mouse	MODERN SPECIES	9	Cfap53 (ENSMUSG00000035394)	Myo5b (ENSMUSG00000025885)	Acaa2 (ENSMUSG00000036880)	Lipg (ENSMUSG00000053846)	Rpl17 (ENSMUSG00000062328)	BC031181 (ENSMUSG00000036299)	Dym (ENSMUSG00000035765)	Smad7 (ENSMUSG00000025880)	Ctif (ENSMUSG00000052928)	Zbtb7c (ENSMUSG00000044646)	Smad2 (ENSMUSG00000024563)	Skor2 (ENSMUSG00000091519) #16	Ier3ip1 (ENSMUSG00000090000)	Hdhd2 (ENSMUSG00000025421) #18	Katnal2 (ENSMUSG00000025420) #21	Pias2 (ENSMUSG00000025423) #22	St8sia5 (ENSMUSG00000025425) #23	Loxhd1 (ENSMUSG00000032818) #24	Rnf165 (ENSMUSG00000025427) #25	8030462N17Rik (ENSMUSG00000047466) #26	Haus1 (ENSMUSG00000041840) #27	Atp5a1 (ENSMUSG00000025428) #28	Pstpip2 (ENSMUSG00000025429) #29	Epg5 (ENSMUSG00000039840) #30	Siglec15 (ENSMUSG00000091055) #31	Slc14a1 (ENSMUSG00000059336) #32	Slc14a2 (ENSMUSG00000024552) #33	Gm6133 (ENSMUSG00000090451)	Setbp1 (ENSMUSG00000024548) #34	Pard6g (ENSMUSG00000056214)	Adnp2 (ENSMUSG00000053950)
Mus_C	ANCESTRAL SPECIES	16	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648.c #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00950000183010.a.b.a.a.a.a.a.b.l.d	ENSGT00940000158784 #34	ENSGT00950000183211.a.b	ENSGT01100000265037
spretus	MODERN SPECIES	9	Cfap53 (MGP_SPRETEiJ_G0023313)	Myo5b (MGP_SPRETEiJ_G0023314)	Acaa2 (MGP_SPRETEiJ_G0023315)	Lipg (MGP_SPRETEiJ_G0023316)	MGP_SPRETEiJ_G0023317	BC031181 (MGP_SPRETEiJ_G0023318)	Dym (MGP_SPRETEiJ_G0023319)	Smad7 (MGP_SPRETEiJ_G0023320)	Ctif (MGP_SPRETEiJ_G0023321)	Zbtb7c (MGP_SPRETEiJ_G0023322)	Smad2 (MGP_SPRETEiJ_G0023323)	Skor2 (MGP_SPRETEiJ_G0023324) #16	MGP_SPRETEiJ_G0023325 #17	Hdhd2 (MGP_SPRETEiJ_G0023326) #18	Katnal2 (MGP_SPRETEiJ_G0023327) #21	Pias2 (MGP_SPRETEiJ_G0023328) #22	MGP_SPRETEiJ_G0023329	St8sia5 (MGP_SPRETEiJ_G0023330) #23	Loxhd1 (MGP_SPRETEiJ_G0023331) #24	8030462N17Rik (MGP_SPRETEiJ_G0023333) #26	Haus1 (MGP_SPRETEiJ_G0023334) #27	Atp5a1 (MGP_SPRETEiJ_G0023335) #28	Pstpip2 (MGP_SPRETEiJ_G0023336) #29	Epg5 (MGP_SPRETEiJ_G0023337) #30	Siglec15 (MGP_SPRETEiJ_G0023338) #31	Slc14a1 (MGP_SPRETEiJ_G0023339) #32	Slc14a2 (MGP_SPRETEiJ_G0023340) #33	MGP_SPRETEiJ_G0023341	Setbp1 (MGP_SPRETEiJ_G0023342) #34	Eola1 (MGP_SPRETEiJ_G0023343)	MGP_SPRETEiJ_G0023344
Steppe mouse	DUPLICATION
Steppe mouse	MODERN SPECIES	2730																ENSMSIG00000031992 #22	St8sia5 (ENSMSIG00000031990) #23	Loxhd1 (ENSMSIG00000031989) #24	Rnf165 (ENSMSIG00000031988) #25	8030462N17Rik (ENSMSIG00000031987) #26	Haus1 (ENSMSIG00000031985) #27	Atp5a1 (ENSMSIG00000031984) #28	Pstpip2 (ENSMSIG00000031982) #29
Steppe mouse	MODERN SPECIES	3130	Lipg (ENSMSIG00000019321)	Rpl17 (ENSMSIG00000019275)	BC031181 (ENSMSIG00000019259)	ENSMSIG00000019247	Dym (ENSMSIG00000019180)	Smad7 (ENSMSIG00000019123)	ENSMSIG00000019110	Ctif (ENSMSIG00000019005)	Zbtb7c (ENSMSIG00000018967)	ENSMSIG00000018946	Smad2 (ENSMSIG00000018887)	Skor2 (ENSMSIG00000018834) #16	ENSMSIG00000018819 #17	Hdhd2 (ENSMSIG00000018790) #18	Katnal2 (ENSMSIG00000018633) #21	ENSMSIG00000018626 #22
Laurasiatheria	ANCESTRAL SPECIES	23	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00390000002428.a.g.b #19	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Laurasiatheria_a	ANCESTRAL SPECIES	13	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT00390000002428.a.g.b #19	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Artiodactyla	ANCESTRAL SPECIES	17	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT00390000002428.a.g.b #19	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000156943	ENSGT00940000158673
Artiodactyla_a	ANCESTRAL SPECIES	17	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT00390000002428.a.g.b #19	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000156943	ENSGT00940000158673
Artiodactyla_b	ANCESTRAL SPECIES	10	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00390000002428.a.g.b #19	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000156943	ENSGT00940000154201.a.a.a.b
Pecora	ANCESTRAL SPECIES	26	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00390000002428.a.g.b #19	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT01030000234510.a.a.b	ENSGT01030000234510.a.a.a.a.a.a	ENSGT00390000002368
Yarkand deer	MODERN SPECIES	19	ACAA2 (ENSCHYG00000026661)	LIPG (ENSCHYG00000026718)	ENSCHYG00000026734	C18orf32 (ENSCHYG00000026758)	DYM (ENSCHYG00000026793)	SMAD7 (ENSCHYG00000026860)	CTIF (ENSCHYG00000026870)	ENSCHYG00000026884	ZBTB7C (ENSCHYG00000009960)	ENSCHYG00000010021	SMAD2 (ENSCHYG00000010054)	ENSCHYG00000010193 #16	ENSCHYG00000010350 #17	HDHD2 (ENSCHYG00000010250) #18	KATNAL2 (ENSCHYG00000010401) #21	PIAS2 (ENSCHYG00000010761) #22	ENSCHYG00000010966	ST8SIA5 (ENSCHYG00000011028) #23	LOXHD1 (ENSCHYG00000011324) #24	ENSCHYG00000013406 #26	ENSCHYG00000013803	HAUS1 (ENSCHYG00000013860) #27	ATP5F1A (ENSCHYG00000014052) #28	PSTPIP2 (ENSCHYG00000014255) #29	ENSCHYG00000014621	EPG5 (ENSCHYG00000014653) #30	SIGLEC15 (ENSCHYG00000014853) #31	SLC14A1 (ENSCHYG00000014960) #32	SLC14A2 (ENSCHYG00000015148) #33	SETBP1 (ENSCHYG00000015524) #34	ENSCHYG00000015620
Percora_a	ANCESTRAL SPECIES	28	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00390000002428.a.g.b #19	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846.ab #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT01030000234510.a.a.b	ENSGT01030000234510.a.a.a.a.a.a	ENSGT00390000002368
Siberian musk deer	MODERN SPECIES	132	ENSMMSG00000006303	ACAA2 (ENSMMSG00000006348)	LIPG (ENSMMSG00000006397)	ENSMMSG00000006453	C18orf32 (ENSMMSG00000006526)	DYM (ENSMMSG00000006548)	SMAD7 (ENSMMSG00000006627)	CTIF (ENSMMSG00000006694)	ZBTB7C (ENSMMSG00000006737)	ENSMMSG00000006765	SKOR2 (ENSMMSG00000006829) #16	IER3IP1 (ENSMMSG00000006915) #17	HDHD2 (ENSMMSG00000006946) #18	KATNAL2 (ENSMMSG00000006988) #21	ENSMMSG00000007106	PIAS2 (ENSMMSG00000007137) #22	ST8SIA5 (ENSMMSG00000007341) #23	LOXHD1 (ENSMMSG00000007604) #24	RNF165 (ENSMMSG00000011227) #25	C18orf25 (ENSMMSG00000011290) #26	HAUS1 (ENSMMSG00000011347) #27	ATP5F1A (ENSMMSG00000011430) #28	ENSMMSG00000011466	PSTPIP2 (ENSMMSG00000011495) #29	EPG5 (ENSMMSG00000011583) #30	SIGLEC15 (ENSMMSG00000011634) #31	SLC14A1 (ENSMMSG00000011666) #32	SLC14A2 (ENSMMSG00000011706) #33	SETBP1 (ENSMMSG00000011794) #34	MC2R (ENSMMSG00000011827)	MC5R (ENSMMSG00000011839)
Bovidae	ANCESTRAL SPECIES	28	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00390000002428.a.g.b #19	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846.ab #28	ENSGT00940000158788 #29	ENSGT00950000183198.c.b.a.u	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT01030000234510.a.a.b	ENSGT01030000234510.a.a.a.a.a.a
Bovinae	ANCESTRAL SPECIES	28	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741.i.b	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846.ab #28	ENSGT00940000158788 #29	ENSGT00950000183198.c.b.a.u	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT01030000235502	ENSGT01030000234510.a.a.b
Bos	ANCESTRAL SPECIES	29	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741.j	ENSGT00950000183010.a.b.a.b.a	ENSGT00390000018741.i.b	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846.ab #28	ENSGT00940000158788 #29	ENSGT00950000183198.c.b.a.u	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00390000010047.b.kb	ENSGT01030000235502
Bos_a	ANCESTRAL SPECIES	28	ENSGT00950000183005.a.a	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741.j	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846.ab #28	ENSGT00940000158788 #29	ENSGT00950000183198.c.b.a.u	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00390000010047.b.kb	ENSGT01030000235502
Domestic yak	MODERN SPECIES	13	ACAA2 (ENSBGRG00000023212)	LIPG (ENSBGRG00000023098)	ENSBGRG00000022965	ENSBGRG00000022927	DYM (ENSBGRG00000022704)	SMAD7 (ENSBGRG00000022643)	ENSBGRG00000022591	CTIF (ENSBGRG00000022473)	ZBTB7C (ENSBGRG00000022372)	SMAD2 (ENSBGRG00000022238)	ENSBGRG00000022203 #16	IER3IP1 (ENSBGRG00000022154) #17	HDHD2 (ENSBGRG00000022037) #18	KATNAL2 (ENSBGRG00000021942) #21	ENSBGRG00000021911	PIAS2 (ENSBGRG00000021507) #22	ST8SIA5 (ENSBGRG00000021274) #23	LOXHD1 (ENSBGRG00000019547) #24	RNF165 (ENSBGRG00000019400) #25	C18orf25 (ENSBGRG00000019304) #26	HAUS1 (ENSBGRG00000019042) #27	ATP5F1A (ENSBGRG00000018791) #28	PSTPIP2 (ENSBGRG00000018564) #29	EPG5 (ENSBGRG00000018124) #30	SIGLEC15 (ENSBGRG00000018017) #31	SLC14A1 (ENSBGRG00000017647) #32	SLC14A2 (ENSBGRG00000017535) #33	SETBP1 (ENSBGRG00000017294) #34	ENSBGRG00000017233 #34	ENSBGRG00000017170	MC2R (ENSBGRG00000017129)
Wild yak	MODERN SPECIES	2191												ENSBMUG00000012703 #16	IER3IP1 (ENSBMUG00000012714) #17	HDHD2 (ENSBMUG00000012729) #18	KATNAL2 (ENSBMUG00000012760) #21	PIAS2 (ENSBMUG00000012834) #22	ST8SIA5 (ENSBMUG00000012907) #23
Bos_b	ANCESTRAL SPECIES	34	ENSGT00950000183005.a.a	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.a	ENSGT00390000018741.i.b	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846.ab #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00390000010047.b.kb	ENSGT01030000235502	ENSGT01030000234510.a.a.b
Cow	MODERN SPECIES	16	MYO5B (ENSBTAG00000019455)	ACAA2 (ENSBTAG00000002863)	LIPG (ENSBTAG00000048916)	RPL17 (ENSBTAG00000022902)	C24H18orf32 (ENSBTAG00000021334)	DYM (ENSBTAG00000000024)	SMAD7 (ENSBTAG00000012441)	CTIF (ENSBTAG00000018901)	ZBTB7C (ENSBTAG00000013306)	SMAD2 (ENSBTAG00000039916)	SKOR2 (ENSBTAG00000032962) #16	IER3IP1 (ENSBTAG00000032961) #17	HDHD2 (ENSBTAG00000011893) #18	KATNAL2 (ENSBTAG00000019331) #21	ENSBTAG00000047547	PIAS2 (ENSBTAG00000007833) #22	ST8SIA5 (ENSBTAG00000001770) #23	LOXHD1 (ENSBTAG00000015210) #24	ENSBTAG00000048422	RNF165 (ENSBTAG00000001128) #25	C24H18orf25 (ENSBTAG00000032964) #26	HAUS1 (ENSBTAG00000002512) #27	ATP5F1A (ENSBTAG00000002507) #28	PSTPIP2 (ENSBTAG00000002624) #29	EPG5 (ENSBTAG00000012067) #30	SIGLEC15 (ENSBTAG00000016620) #31	SLC14A1 (ENSBTAG00000019870) #32	SLC14A2 (ENSBTAG00000002099) #33	SETBP1 (ENSBTAG00000018088) #34	ENSBTAG00000046153	ENSBTAG00000048673
Hybrid Bos Indicus	MODERN SPECIES	16	ACAA2 (ENSBIXG00005026872)	LIPG (ENSBIXG00005004622)	ENSBIXG00005007771	ENSBIXG00005027155	DYM (ENSBIXG00005027220)	SMAD7 (ENSBIXG00005004711)	CTIF (ENSBIXG00005007777)	ZBTB7C (ENSBIXG00005027504)	SMAD2 (ENSBIXG00005027591)	SKOR2 (ENSBIXG00005004756) #16	IER3IP1 (ENSBIXG00005027693) #17	ENSBIXG00005027700	HDHD2 (ENSBIXG00005027742) #18	KATNAL2 (ENSBIXG00005004778) #21	ENSBIXG00005006537	PIAS2 (ENSBIXG00005027955) #22	ST8SIA5 (ENSBIXG00005028065) #23	LOXHD1 (ENSBIXG00005028849) #24	ENSBIXG00005005062	RNF165 (ENSBIXG00005002180) #25	C18orf25 (ENSBIXG00005002109) #26	ENSBIXG00005005126 #27	ATP5F1A (ENSBIXG00005002010) #28	PSTPIP2 (ENSBIXG00005029098) #29	EPG5 (ENSBIXG00005005178) #30	SIGLEC15 (ENSBIXG00005029135) #31	SLC14A1 (ENSBIXG00005001781) #32	SLC14A2 (ENSBIXG00005029181) #33	SETBP1 (ENSBIXG00005029205) #34	ENSBIXG00005029232	MC2R (ENSBIXG00005006098)
American bison	MODERN SPECIES	3076						DYM (ENSBBBG00000010404)	SMAD7 (ENSBBBG00000010410)	CTIF (ENSBBBG00000010421)	ENSBBBG00000010424	ZBTB7C (ENSBBBG00000010443)	SMAD2 (ENSBBBG00000010465)	SKOR2 (ENSBBBG00000010476) #16	IER3IP1 (ENSBBBG00000010485) #17	HDHD2 (ENSBBBG00000010488) #18	KATNAL2 (ENSBBBG00000010508) #21	PIAS2 (ENSBBBG00000010545) #22
Caprinae	DUPLICATION
Caprinae	ANCESTRAL SPECIES	25	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00390000002428.a.g.b #19	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b.m #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846.ab.a #28	ENSGT00940000158788 #29	ENSGT00950000183198.c.b.a.u	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT01030000234510.a.a.b	ENSGT01030000234510.a.a.a.a.a.a
Goat	MODERN SPECIES	16	ACAA2 (ENSCHIG00000024466)	ENSCHIG00000003894	LIPG (ENSCHIG00000015994)	ENSCHIG00000011677	C18orf32 (ENSCHIG00000021354)	ENSCHIG00000004940	DYM (ENSCHIG00000001838)	SMAD7 (ENSCHIG00000019461)	CTIF (ENSCHIG00000014455)	ZBTB7C (ENSCHIG00000001635)	SMAD2 (ENSCHIG00000020206)	SKOR2 (ENSCHIG00000011642) #16	IER3IP1 (ENSCHIG00000020552) #17	HDHD2 (ENSCHIG00000015973) #18	KATNAL2 (ENSCHIG00000021217) #21	ENSCHIG00000014561 #22	ST8SIA5 (ENSCHIG00000021775) #23	LOXHD1 (ENSCHIG00000019780) #24	RNF165 (ENSCHIG00000009622) #25	C18orf25 (ENSCHIG00000014294) #26	HAUS1 (ENSCHIG00000027208) #27	ENSCHIG00000014708 #28	PSTPIP2 (ENSCHIG00000019291) #29	EPG5 (ENSCHIG00000003358) #30	SIGLEC15 (ENSCHIG00000008764) #31	SLC14A1 (ENSCHIG00000006085) #32	SLC14A2 (ENSCHIG00000023270) #33	SETBP1 (ENSCHIG00000014366) #34	MC2R (ENSCHIG00000006175)	MC5R (ENSCHIG00000019609)	RNMT (ENSCHIG00000000428)
Rambouillet Sheep	MODERN SPECIES	15	ACAA2 (ENSOARG00020011796)	LIPG (ENSOARG00020011622)	RPL17 (ENSOARG00020011339)	C18orf32 (ENSOARG00020011289)	ENSOARG00020011257	DYM (ENSOARG00020011069)	SMAD7 (ENSOARG00020010974)	CTIF (ENSOARG00020010822)	ZBTB7C (ENSOARG00020010706)	SMAD2 (ENSOARG00020010458)	SKOR2 (ENSOARG00020010308) #16	IER3IP1 (ENSOARG00020010237) #17	HDHD2 (ENSOARG00020010165) #18	ENSOARG00020010055 #19	KATNAL2 (ENSOARG00020009912) #21	PIAS2 (ENSOARG00020009642) #22	ST8SIA5 (ENSOARG00020009312) #23	LOXHD1 (ENSOARG00020006581) #24	RNF165 (ENSOARG00020006346) #25	C18orf25 (ENSOARG00020025062) #26	HAUS1 (ENSOARG00020025030) #27	ATP5F1A (ENSOARG00020025008) #28	PSTPIP2 (ENSOARG00020024936) #29	ENSOARG00020024920	EPG5 (ENSOARG00020024844) #30	SIGLEC15 (ENSOARG00020024818) #31	SLC14A1 (ENSOARG00020024788) #32	SLC14A2 (ENSOARG00020024734) #33	SETBP1 (ENSOARG00020024713) #34	ENSOARG00020024696	MC2R (ENSOARG00020024677)
Caprinae	ANCESTRAL SPECIES																	ENSGT01030000234539.a.a.b.b.n #22
Goat	MODERN SPECIES	13	LCMT2 (ENSCHIG00000004003)	TGM7 (ENSCHIG00000018370)	TGM5 (ENSCHIG00000015160)	MIS18BP1 (ENSCHIG00000023697)	FANCM (ENSCHIG00000015176)	FKBP3 (ENSCHIG00000018893)	PRPF39 (ENSCHIG00000010118)	TOGARAM1 (ENSCHIG00000015767)	KLHL28 (ENSCHIG00000023507)	C14orf28 (ENSCHIG00000008954)	ENSCHIG00000012257	ENSCHIG00000017232	ENSCHIG00000016320	ENSCHIG00000014697	ENSCHIG00000007447	ENSCHIG00000025383 #22	LRFN5 (ENSCHIG00000008107)	ENSCHIG00000016309	ENSCHIG00000018649	FBXO33 (ENSCHIG00000018083)	ENSCHIG00000010530	PNN (ENSCHIG00000016458)	TRAPPC6B (ENSCHIG00000009203)	GEMIN2 (ENSCHIG00000009881)	SEC23A (ENSCHIG00000026578)	CLEC14A (ENSCHIG00000008637)	SSTR1 (ENSCHIG00000006157)	ENSCHIG00000013240	FOXA1 (ENSCHIG00000023519)	MIPOL1 (ENSCHIG00000011846)	SLC25A21 (ENSCHIG00000017403)
Cetacea	ANCESTRAL SPECIES	11	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00390000002428.a.g.b #19	ENSGT00940000157302 #21	ENSGT01000000220806	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00390000003990.l	ENSGT00940000156943
Odontoceti	ANCESTRAL SPECIES	10	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741.k	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT00390000002428.a.g.b #19	ENSGT01000000220806	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00390000003990.l	ENSGT00940000156943
Sperm whale	MODERN SPECIES	10	ENSPCTG00005010783	ENSPCTG00005010644	ACAA2 (ENSPCTG00005010500)	LIPG (ENSPCTG00005010413)	ENSPCTG00005010250	ENSPCTG00005010201	DYM (ENSPCTG00005009929)	CTIF (ENSPCTG00005009802)	ZBTB7C (ENSPCTG00005009728)	SMAD2 (ENSPCTG00005009494)	SKOR2 (ENSPCTG00005009374) #16	IER3IP1 (ENSPCTG00005009339) #17	HDHD2 (ENSPCTG00005009305) #18	KATNAL2 (ENSPCTG00005009038) #21	ENSPCTG00005008984	PIAS2 (ENSPCTG00005008808) #22	ENSPCTG00005008636 #24	ST8SIA5 (ENSPCTG00005008579) #23	ENSPCTG00005008447 #24	RNF165 (ENSPCTG00005008364) #25	C19H18orf25 (ENSPCTG00005008306) #26	HAUS1 (ENSPCTG00005008172) #27	ATP5F1A (ENSPCTG00005008127) #28	PSTPIP2 (ENSPCTG00005008088) #29	EPG5 (ENSPCTG00005008044) #30	SIGLEC15 (ENSPCTG00005008000) #31	SLC14A1 (ENSPCTG00005007875) #32	SLC14A2 (ENSPCTG00005007803) #33	SETBP1 (ENSPCTG00005007777) #34	ENSPCTG00005007758	ENSPCTG00005007743
Odontoceti_a	ANCESTRAL SPECIES	9	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741.k	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT00390000002428.a.g.b #19	ENSGT01000000220806	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00390000003349.d	ENSGT00390000003990.l
Dolphin	MODERN SPECIES	2323																PIAS2 (ENSTTRG00000006019) #22
Odontoceti_b	ANCESTRAL SPECIES	10	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741.k	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01000000220806	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00390000003349.d	ENSGT00390000003990.l
Monodontidae	ANCESTRAL SPECIES	8	ENSGT00940000169764	ENSGT00940000159394	ENSGT00950000183010.a.b.a.a.a.a.b	ENSGT00390000018741.k	ENSGT00390000008772	ENSGT00940000159872	ENSGT00390000008808.k.a.a	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01000000220806	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00950000183064.b.d	ENSGT00940000153244.B.y.b	ENSGT00940000159026
Beluga whale	MODERN SPECIES	85											SKOR2 (ENSDLEG00000017834) #16	ENSDLEG00000017903	HDHD2 (ENSDLEG00000017914) #18	KATNAL2 (ENSDLEG00000017942) #21	ENSDLEG00000018112	PIAS2 (ENSDLEG00000018124) #22	ST8SIA5 (ENSDLEG00000018143) #23	LOXHD1 (ENSDLEG00000018163) #24	RNF165 (ENSDLEG00000018238) #25	CUNH18orf25 (ENSDLEG00000018251) #26	HAUS1 (ENSDLEG00000018258) #27	ATP5A1 (ENSDLEG00000018272) #28	PSTPIP2 (ENSDLEG00000018281) #29	EPG5 (ENSDLEG00000018365) #30	SIGLEC15 (ENSDLEG00000018831) #31	SLC14A1 (ENSDLEG00000018837) #32	SLC14A2 (ENSDLEG00000018851) #33	SETBP1 (ENSDLEG00000018888) #34	ENSDLEG00000018895	ENSDLEG00000018899	ENSDLEG00000018905
Narwhal	MODERN SPECIES	295	LIPG (ENSMMNG00015000826)	ENSMMNG00015000862	ENSMMNG00015000947	DYM (ENSMMNG00015001014)	ENSMMNG00015001110	SMAD7 (ENSMMNG00015001136)	ENSMMNG00015001156	CTIF (ENSMMNG00015001193)	ZBTB7C (ENSMMNG00015001274)	SMAD2 (ENSMMNG00015001331)	SKOR2 (ENSMMNG00015001428) #16	ENSMMNG00015001451 #17	HDHD2 (ENSMMNG00015001468) #18	KATNAL2 (ENSMMNG00015001513) #21	ENSMMNG00015001565	PIAS2 (ENSMMNG00015001607) #22	ST8SIA5 (ENSMMNG00015001685) #23	LOXHD1 (ENSMMNG00015002006) #24	RNF165 (ENSMMNG00015002686) #25	C18orf25 (ENSMMNG00015002704) #26	HAUS1 (ENSMMNG00015002726) #27	ATP5F1A (ENSMMNG00015002755) #28	PSTPIP2 (ENSMMNG00015002786) #29	EPG5 (ENSMMNG00015002843) #30	SIGLEC15 (ENSMMNG00015002905) #31	SLC14A1 (ENSMMNG00015002937) #32	SLC14A2 (ENSMMNG00015002988) #33	SETBP1 (ENSMMNG00015003067) #34	ENSMMNG00015003095	ENSMMNG00015003111	SYT4 (ENSMMNG00015003150)
Vaquita	MODERN SPECIES	5	ACAA2 (ENSPSNG00000009112)	LIPG (ENSPSNG00000009216)	ENSPSNG00000009327	ENSPSNG00000009445	DYM (ENSPSNG00000009515)	ENSPSNG00000009632	ENSPSNG00000009707	CTIF (ENSPSNG00000009732)	ZBTB7C (ENSPSNG00000009825)	SMAD2 (ENSPSNG00000009901)	SKOR2 (ENSPSNG00000010229) #16	IER3IP1 (ENSPSNG00000010315) #17	HDHD2 (ENSPSNG00000010382) #18	KATNAL2 (ENSPSNG00000010440) #21	ENSPSNG00000010683	PIAS2 (ENSPSNG00000010743) #22	ST8SIA5 (ENSPSNG00000010902) #23	LOXHD1 (ENSPSNG00000011419) #24	RNF165 (ENSPSNG00000013772) #25	C18orf25 (ENSPSNG00000013977) #26	HAUS1 (ENSPSNG00000014089) #27	ATP5F1A (ENSPSNG00000014199) #28	PSTPIP2 (ENSPSNG00000014312) #29	EPG5 (ENSPSNG00000014417) #30	SIGLEC15 (ENSPSNG00000014516) #31	SLC14A1 (ENSPSNG00000014661) #32	SLC14A2 (ENSPSNG00000015077) #33	SETBP1 (ENSPSNG00000015348) #34	ENSPSNG00000015482	ENSPSNG00000015523	ENSPSNG00000015545
Blue whale	MODERN SPECIES	5	LIPG (ENSBMSG00010021562)	ENSBMSG00010021535	C18orf32 (ENSBMSG00010021530)	DYM (ENSBMSG00010021517)	SMAD7 (ENSBMSG00010021494)	CTIF (ENSBMSG00010021461)	ZBTB7C (ENSBMSG00010021442)	SMAD2 (ENSBMSG00010021413)	SKOR2 (ENSBMSG00010021387) #16	ENSBMSG00010021377	IER3IP1 (ENSBMSG00010021374) #17	HDHD2 (ENSBMSG00010021363) #18	ENSBMSG00010021354 #19	KATNAL2 (ENSBMSG00010021337) #21	ENSBMSG00010021325	PIAS2 (ENSBMSG00010021288) #22	ST8SIA5 (ENSBMSG00010021215) #23	LOXHD1 (ENSBMSG00010020792) #24	RNF165 (ENSBMSG00010020628) #25	C18orf25 (ENSBMSG00010020596) #26	HAUS1 (ENSBMSG00010020557) #27	ATP5F1A (ENSBMSG00010020528) #28	ENSBMSG00010020513	PSTPIP2 (ENSBMSG00010020499) #29	EPG5 (ENSBMSG00010020473) #30	SIGLEC15 (ENSBMSG00010020448) #31	SLC14A1 (ENSBMSG00010020365) #32	SLC14A2 (ENSBMSG00010020311) #33	SETBP1 (ENSBMSG00010020281) #34	SYT4 (ENSBMSG00010020248)	ENSBMSG00010020228
Camelidae	ANCESTRAL SPECIES	53	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT00390000002428.a.g.b #19	ENSGT01030000234539.a.a.b.b #22	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34
Arabian camel	MODERN SPECIES	23	ACAA2 (ENSCDRG00005010799)	ENSCDRG00005010930	LIPG (ENSCDRG00005010970)	RPL17 (ENSCDRG00005011453)	C18orf32 (ENSCDRG00005011639)	DYM (ENSCDRG00005011719)	ENSCDRG00005012031	ENSCDRG00005012050	CTIF (ENSCDRG00005012119)	ZBTB7C (ENSCDRG00005012395)	SMAD2 (ENSCDRG00005012465)	IER3IP1 (ENSCDRG00005012846) #17	HDHD2 (ENSCDRG00005012918) #18	KATNAL2 (ENSCDRG00005012992) #21	ENSCDRG00005013155 #19	PIAS2 (ENSCDRG00005013189) #22	LOXHD1 (ENSCDRG00005013391) #24	ENSCDRG00005014972 #25	ENSCDRG00005015011	C18orf25 (ENSCDRG00005015062) #26	HAUS1 (ENSCDRG00005015141) #27	ATP5F1A (ENSCDRG00005015287) #28	PSTPIP2 (ENSCDRG00005015365) #29	EPG5 (ENSCDRG00005015455) #30	SIGLEC15 (ENSCDRG00005015557) #31	SLC14A1 (ENSCDRG00005015615) #32	ENSCDRG00005015812 #33	ENSCDRG00005015929 #33	SETBP1 (ENSCDRG00005016013) #34	ENSCDRG00005016038	ENSCDRG00005016068
Alpaca	MODERN SPECIES	5383																PIAS2 (ENSVPAG00000012376) #22
Suina	ANCESTRAL SPECIES	12	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.a.a.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34
Pig	MODERN SPECIES		MYO5B (ENSSSCG00000004511)	ACAA2 (ENSSSCG00000004510)	LIPG (ENSSSCG00000004509)	ENSSSCG00000035007	C18orf32 (ENSSSCG00000034415)	DYM (ENSSSCG00000004508)	SMAD7 (ENSSSCG00000004507)	CTIF (ENSSSCG00000004506)	ZBTB7C (ENSSSCG00000028076)	SMAD2 (ENSSSCG00000004505)	SKOR2 (ENSSSCG00000005767) #16	ENSSSCG00000039669	IER3IP1 (ENSSSCG00000060420) #17	HDHD2 (ENSSSCG00000005771) #18	KATNAL2 (ENSSSCG00000022643) #21	PIAS2 (ENSSSCG00000034730) #22	ST8SIA5 (ENSSSCG00000032053) #23	LOXHD1 (ENSSSCG00000004503) #24	RNF165 (ENSSSCG00000004502) #25	C18orf25 (ENSSSCG00000004500) #26	HAUS1 (ENSSSCG00000004498) #27	ATP5F1A (ENSSSCG00000004499) #28	PSTPIP2 (ENSSSCG00000060601) #29	EPG5 (ENSSSCG00000021072) #30	SIGLEC15 (ENSSSCG00000004493) #31	SLC14A1 (ENSSSCG00000004492) #32	ENSSSCG00000004491 #33	ENSSSCG00000045948	SETBP1 (ENSSSCG00000004490) #34	ENSSSCG00000008882	ENSSSCG00000005790
Chacoan peccary	MODERN SPECIES	124												SKOR2 (ENSCWAG00000008664) #16	IER3IP1 (ENSCWAG00000008743) #17	HDHD2 (ENSCWAG00000008775) #18	KATNAL2 (ENSCWAG00000008820) #21	PIAS2 (ENSCWAG00000009072) #22	ENSCWAG00000009195
Laurasiatheria_b	ANCESTRAL SPECIES	13	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00390000002428.a.g.b #19	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT01030000240358	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a.b #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402
Carnivora	ANCESTRAL SPECIES	13	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT01030000240358	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a.b #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402
Caniformia	ANCESTRAL SPECIES	9	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.a.a.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT01030000240358	ENSGT00390000006029 #27	ENSGT00550000074846.bb.b #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a.b #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402
Caniformia_b	ANCESTRAL SPECIES	25	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.c.a	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT01030000240358	ENSGT00390000006029 #27	ENSGT00550000074846.bb.b #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a.b #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402
Ursidae	ANCESTRAL SPECIES	23	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.c.a	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT01030000240358	ENSGT00390000006029 #27	ENSGT00550000074846.bb.b #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT00940000167582	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402
Ursus	ANCESTRAL SPECIES	25	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.d	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846.bb.b #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943	ENSGT00940000154201.a.a.a.b
American black bear	MODERN SPECIES	2360																PIAS2 (ENSUAMG00000008036) #22	ST8SIA5 (ENSUAMG00000008510) #23
Polar bear	MODERN SPECIES	96	CXXC1 (ENSUMAG00000003014)	MBD1 (ENSUMAG00000002947)	MYO5B (ENSUMAG00000002812)	ACAA2 (ENSUMAG00000002792)	LIPG (ENSUMAG00000002779)	ENSUMAG00000002766	C18orf32 (ENSUMAG00000002755)	DYM (ENSUMAG00000002750)	ENSUMAG00000002746	CTIF (ENSUMAG00000002735)	ZBTB7C (ENSUMAG00000002721)	SMAD2 (ENSUMAG00000002720)	IER3IP1 (ENSUMAG00000002717) #17	HDHD2 (ENSUMAG00000002716) #18	KATNAL2 (ENSUMAG00000002674) #21	PIAS2 (ENSUMAG00000002661) #22	ST8SIA5 (ENSUMAG00000002618) #23	LOXHD1 (ENSUMAG00000002413) #24	RNF165 (ENSUMAG00000002386) #25	C18orf25 (ENSUMAG00000002382) #26	HAUS1 (ENSUMAG00000002378) #27	ATP5F1A (ENSUMAG00000002375) #28	PSTPIP2 (ENSUMAG00000002367) #29	EPG5 (ENSUMAG00000002362) #30	SLC14A1 (ENSUMAG00000002359) #32	ENSUMAG00000002312 #33	SETBP1 (ENSUMAG00000002294) #34	SYT4 (ENSUMAG00000002280)	RIT2 (ENSUMAG00000002274)	PIK3C3 (ENSUMAG00000002253)	ENSUMAG00000002210
Giant Panda	MODERN SPECIES	5	MBD1 (ENSAMEG00000000238)	MYO5B (ENSAMEG00000009253)	ACAA2 (ENSAMEG00000009411)	LIPG (ENSAMEG00000009434)	RPL17 (ENSAMEG00000009498)	ENSAMEG00000027976	DYM (ENSAMEG00000006724)	SMAD7 (ENSAMEG00000031009)	CTIF (ENSAMEG00000029852)	ZBTB7C (ENSAMEG00000012857)	SMAD2 (ENSAMEG00000012816)	ENSAMEG00000012815 #16	IER3IP1 (ENSAMEG00000023574) #17	HDHD2 (ENSAMEG00000012799) #18	KATNAL2 (ENSAMEG00000012794) #21	PIAS2 (ENSAMEG00000012748) #22	LOXHD1 (ENSAMEG00000012676) #24	RNF165 (ENSAMEG00000012667) #25	C18orf25 (ENSAMEG00000012662) #26	ENSAMEG00000025621	HAUS1 (ENSAMEG00000012644) #27	ATP5F1A (ENSAMEG00000012614) #28	PSTPIP2 (ENSAMEG00000012579) #29	EPG5 (ENSAMEG00000012534) #30	ENSAMEG00000027408	SLC14A1 (ENSAMEG00000012521) #32	ENSAMEG00000005289 #33	SETBP1 (ENSAMEG00000029118) #34	SYT4 (ENSAMEG00000006769)	RIT2 (ENSAMEG00000024343)	ENSAMEG00000007466
Mustelinae	ANCESTRAL SPECIES	5	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.c.a	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846.bb.b #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a.b #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Ferret	MODERN SPECIES	195			MYO5B (ENSMPUG00000000748)	ACAA2 (ENSMPUG00000000749)	LIPG (ENSMPUG00000000750)	ENSMPUG00000000801	ENSMPUG00000000819	DYM (ENSMPUG00000000838)	SMAD7 (ENSMPUG00000000842)	CTIF (ENSMPUG00000000844)	ZBTB7C (ENSMPUG00000000848)	SMAD2 (ENSMPUG00000000850)	ENSMPUG00000000851 #16	HDHD2 (ENSMPUG00000000855) #18	KATNAL2 (ENSMPUG00000000857) #21	PIAS2 (ENSMPUG00000000861) #22	ST8SIA5 (ENSMPUG00000000867) #23	LOXHD1 (ENSMPUG00000000881) #24	RNF165 (ENSMPUG00000000899) #25	C18orf25 (ENSMPUG00000000916) #26	HAUS1 (ENSMPUG00000000919) #27	ENSMPUG00000000923 #28	PSTPIP2 (ENSMPUG00000000965) #29	EPG5 (ENSMPUG00000000970) #30	SIGLEC15 (ENSMPUG00000000985) #31	SLC14A1 (ENSMPUG00000000989) #32	ENSMPUG00000001002 #33	SETBP1 (ENSMPUG00000001006) #34	SYT4 (ENSMPUG00000001012)	RIT2 (ENSMPUG00000001015)	PIK3C3 (ENSMPUG00000001018)
American mink	MODERN SPECIES	1	CFAP53 (ENSNVIG00000001864)	MYO5B (ENSNVIG00000001798)	ACAA2 (ENSNVIG00000001712)	LIPG (ENSNVIG00000001676)	RPL17 (ENSNVIG00000001575)	CR032 (ENSNVIG00000001568)	DYM (ENSNVIG00000001500)	SMAD7 (ENSNVIG00000001490)	CTIF (ENSNVIG00000001442)	ZBTB7C (ENSNVIG00000001419)	SMAD2 (ENSNVIG00000001323)	SKOR2 (ENSNVIG00000001287) #16	IER3IP1 (ENSNVIG00000001270) #17	HDHD2 (ENSNVIG00000001251) #18	KATNAL2 (ENSNVIG00000001211) #21	PIAS2 (ENSNVIG00000001141) #22	B7Z1K9 (ENSNVIG00000001042) #23	LOXHD1 (ENSNVIG00000000795) #24	RNF165 (ENSNVIG00000000779) #25	CR025 (ENSNVIG00000000751) #26	HAUS1 (ENSNVIG00000000735) #27	ATP5F1A (ENSNVIG00000000707) #28	PSTPIP2 (ENSNVIG00000000692) #29	EPG5 (ENSNVIG00000000422) #30	SIGLEC15 (ENSNVIG00000000415) #31	UT1 (ENSNVIG00000000284) #32	ENSNVIG00000000164 #33	SETBP1 (ENSNVIG00000000055) #34	ENSNVIG00000021282	SYT4 (ENSNVIG00000021264)	RIT2 (ENSNVIG00000021238)
Canidae	ANCESTRAL SPECIES	1	ENSGT00940000161706	ENSGT00390000000920	ENSGT00940000163114	ENSGT00940000161959	ENSGT00940000161276.C	ENSGT00940000161986	ENSGT00940000161896.a.a	ENSGT00910000144329	ENSGT00940000162189	ENSGT00940000161606	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846.bb.b.a #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a.b #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00390000016908.b	ENSGT00940000159026	ENSGT00940000161402
Canis_lupus	ANCESTRAL SPECIES	4	ENSGT00940000161706	ENSGT00390000000920	ENSGT00940000163114	ENSGT00940000161959	ENSGT00940000161276.C	ENSGT00940000161986	ENSGT00940000161896.a.a	ENSGT00910000144329	ENSGT00940000162189	ENSGT00940000161606	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846.bb.b.a #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a.b #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00950000182901.b	ENSGT00390000016908.b	ENSGT00940000159026
Dingo	MODERN SPECIES	271	S100A16 (ENSCAFG00020010346)	S100A2 (ENSCAFG00020010348)	S100A3 (ENSCAFG00020010349)	ENSCAFG00020010352	S100A5 (ENSCAFG00020010354)	ENSCAFG00020010358	S100A8 (ENSCAFG00020010359)	S100A12 (ENSCAFG00020010365)	ENSCAFG00020010368	ENSCAFG00020010374	ENSCAFG00020010376	SKOR2 (ENSCAFG00020010387) #16	ENSCAFG00020010389 #17	HDHD2 (ENSCAFG00020010391) #18	KATNAL2 (ENSCAFG00020010403) #21	PIAS2 (ENSCAFG00020010501) #22	ST8SIA5 (ENSCAFG00020010505) #23	LOXHD1 (ENSCAFG00020010557) #24	RNF165 (ENSCAFG00020010709) #25	C18orf25 (ENSCAFG00020010717) #26	HAUS1 (ENSCAFG00020010719) #27	ENSCAFG00020010725 #28	PSTPIP2 (ENSCAFG00020010751) #29	EPG5 (ENSCAFG00020010774) #30	SIGLEC15 (ENSCAFG00020010814) #31	SLC14A1 (ENSCAFG00020010836) #32	ENSCAFG00020010873 #33	SETBP1 (ENSCAFG00020010948) #34	ENSCAFG00020011019	SYT4 (ENSCAFG00020011042)	RIT2 (ENSCAFG00020011070)
Dog	MODERN SPECIES	35	S100A1 (ENSCAFG00845001897)	S100A13 (ENSCAFG00845001940)	S100A14 (ENSCAFG00845001986)	S100A16 (ENSCAFG00845002007)	S100A2 (ENSCAFG00845002036)	S100A4 (ENSCAFG00845002094)	S100A5 (ENSCAFG00845002122)	S100A8 (ENSCAFG00845002217)	S100A8 (ENSCAFG00845002254)	S100A9 (ENSCAFG00845002276)	SMAD2 (ENSCAFG00845002338)	SKOR2 (ENSCAFG00845002418) #16	IER3IP1 (ENSCAFG00845002460) #17	HDHD2 (ENSCAFG00845002479) #18	KATNAL2 (ENSCAFG00845002494) #21	PIAS2 (ENSCAFG00845002646) #22	ST8SIA5 (ENSCAFG00845002742) #23	ENSCAFG00845002851 #24	C7H18orf25 (ENSCAFG00845003098) #25	C7H18orf25 (ENSCAFG00845003164) #26	HAUS1 (ENSCAFG00845003245) #27	ATP5F1A (ENSCAFG00845003277) #28	PSTPIP2 (ENSCAFG00845003305) #29	EPG5 (ENSCAFG00845003404) #30	SIGLEC15 (ENSCAFG00845003447) #31	SLC14A1 (ENSCAFG00845003486) #32	ENSCAFG00845003569 #33	ENSCAFG00845003594 #33	SETBP1 (ENSCAFG00845003603) #34	ENSCAFG00845003617	ENSCAFG00845003645
Red fox	MODERN SPECIES	23	S100A14 (ENSVVUG00000028252)	S100A16 (ENSVVUG00000028251)	S100A2 (ENSVVUG00000028250)	S100A3 (ENSVVUG00000028247)	S100A4 (ENSVVUG00000028246)	S100A5 (ENSVVUG00000028245)	ENSVVUG00000028244	S100A8 (ENSVVUG00000028243)	S100A12 (ENSVVUG00000028241)	S100A9 (ENSVVUG00000028236)	SMAD2 (ENSVVUG00000028225)	ENSVVUG00000028208 #16	IER3IP1 (ENSVVUG00000028197) #17	HDHD2 (ENSVVUG00000028191) #18	KATNAL2 (ENSVVUG00000028183) #21	PIAS2 (ENSVVUG00000028165) #22	ST8SIA5 (ENSVVUG00000028155) #23	LOXHD1 (ENSVVUG00000028114) #24	RNF165 (ENSVVUG00000028094) #25	CUNH18orf25 (ENSVVUG00000028091) #26	HAUS1 (ENSVVUG00000028089) #27	ENSVVUG00000028013 #28	PSTPIP2 (ENSVVUG00000027962) #29	EPG5 (ENSVVUG00000027828) #30	SLC14A1 (ENSVVUG00000027806) #32	SLC14A2 (ENSVVUG00000027800) #33	SETBP1 (ENSVVUG00000027793) #34	ENSVVUG00000027791	ENSVVUG00000027783	SYT4 (ENSVVUG00000027777)	ENSVVUG00000027774
Felidae	ANCESTRAL SPECIES	24	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a	ENSGT00390000018741.m	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a.b #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00390000017839.o.b.b.b	ENSGT00940000159026	ENSGT00940000161402
Panthera	ANCESTRAL SPECIES	24	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.a.b	ENSGT00390000018741.m	ENSGT00390000008772	ENSGT00940000153201.j.n	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a.b #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00390000017839.o.b.b.b	ENSGT00940000159026	ENSGT00940000161402
Tiger	MODERN SPECIES	143	MYO5B (ENSPTIG00000019987)	ACAA2 (ENSPTIG00000021827)	LIPG (ENSPTIG00000000449)	ENSPTIG00000007691	C18orf32 (ENSPTIG00000009698)	DYM (ENSPTIG00000011072)	ENSPTIG00000012715	ENSPTIG00000013182	CTIF (ENSPTIG00000013761)	ENSPTIG00000014786	SMAD2 (ENSPTIG00000015931)	ENSPTIG00000019038 #16	IER3IP1 (ENSPTIG00000019219) #17	HDHD2 (ENSPTIG00000019534) #18	KATNAL2 (ENSPTIG00000019828) #21	PIAS2 (ENSPTIG00000020076) #22	ST8SIA5 (ENSPTIG00000021493) #23	LOXHD1 (ENSPTIG00000003929) #24	ENSPTIG00000018660 #25	C18orf25 (ENSPTIG00000018925) #26	HAUS1 (ENSPTIG00000020327) #27	ATP5F1A (ENSPTIG00000020666) #28	PSTPIP2 (ENSPTIG00000021622) #29	EPG5 (ENSPTIG00000021849) #30	SLC14A1 (ENSPTIG00000021937) #32	ENSPTIG00000004707 #33	SETBP1 (ENSPTIG00000007128) #34
Panthera_a	ANCESTRAL SPECIES	26	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.a.b	ENSGT00390000018741.m	ENSGT00390000008772	ENSGT00940000153201.j.n	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a.b #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00390000017839.o.b.b.b	ENSGT00940000159026	ENSGT00940000161402
leopard	MODERN SPECIES	43	MYO5B (ENSPPRG00000012444)	ACAA2 (ENSPPRG00000009885)	LIPG (ENSPPRG00000009382)	ENSPPRG00000006166	ENSPPRG00000004942	DYM (ENSPPRG00000004872)	ENSPPRG00000003458	SMAD7 (ENSPPRG00000002686)	CTIF (ENSPPRG00000002265)	ZBTB7C (ENSPPRG00000001432)	SMAD2 (ENSPPRG00000000616)	ENSPPRG00000000048 #16	IER3IP1 (ENSPPRG00000022716) #17	HDHD2 (ENSPPRG00000022964) #18	KATNAL2 (ENSPPRG00000023079) #21	PIAS2 (ENSPPRG00000023399) #22	ST8SIA5 (ENSPPRG00000018954) #23	LOXHD1 (ENSPPRG00000016773) #24	RNF165 (ENSPPRG00000006559) #25	C18orf25 (ENSPPRG00000005801) #26	HAUS1 (ENSPPRG00000004691) #27	ATP5F1A (ENSPPRG00000004018) #28	PSTPIP2 (ENSPPRG00000002553) #29	EPG5 (ENSPPRG00000000539) #30	SIGLEC15 (ENSPPRG00000000322) #31	SLC14A1 (ENSPPRG00000022676) #32	ENSPPRG00000024428 #33	SETBP1 (ENSPPRG00000024951) #34	ENSPPRG00000022104	SYT4 (ENSPPRG00000021203)	ENSPPRG00000019604
lion	MODERN SPECIES	12	MYO5B (ENSPLOG00000013501)	ACAA2 (ENSPLOG00000013846)	LIPG (ENSPLOG00000014024)	ENSPLOG00000014279	ENSPLOG00000014438	DYM (ENSPLOG00000014488)	ENSPLOG00000014599	SMAD7 (ENSPLOG00000014649)	CTIF (ENSPLOG00000014765)	ZBTB7C (ENSPLOG00000014833)	SMAD2 (ENSPLOG00000014910)	SKOR2 (ENSPLOG00000015171) #16	IER3IP1 (ENSPLOG00000015259) #17	HDHD2 (ENSPLOG00000015310) #18	KATNAL2 (ENSPLOG00000015369) #21	PIAS2 (ENSPLOG00000015647) #22	ST8SIA5 (ENSPLOG00000015755) #23	LOXHD1 (ENSPLOG00000016139) #24	RNF165 (ENSPLOG00000017833) #25	C18orf25 (ENSPLOG00000017933) #26	HAUS1 (ENSPLOG00000017982) #27	ATP5F1A (ENSPLOG00000018053) #28	PSTPIP2 (ENSPLOG00000018143) #29	EPG5 (ENSPLOG00000018247) #30	SIGLEC15 (ENSPLOG00000018426) #31	SLC14A1 (ENSPLOG00000018513) #32	ENSPLOG00000018641 #33	SETBP1 (ENSPLOG00000018804) #34	ENSPLOG00000018869	ZNF236 (ENSPLOG00000018933)	ENSPLOG00000019137
Cat	MODERN SPECIES	243	CXXC1 (ENSFCAG00000006135)	MBD1 (ENSFCAG00000015730)	MYO5B (ENSFCAG00000009880)	LIPG (ENSFCAG00000012354)	RPL17 (ENSFCAG00000011342)	ENSFCAG00000022684	DYM (ENSFCAG00000012954)	SMAD7 (ENSFCAG00000042475)	CTIF (ENSFCAG00000000664)	ZBTB7C (ENSFCAG00000030658)	SMAD2 (ENSFCAG00000013266)	SKOR2 (ENSFCAG00000045761) #16	IER3IP1 (ENSFCAG00000032516) #17	HDHD2 (ENSFCAG00000002788) #18	KATNAL2 (ENSFCAG00000018778) #21	PIAS2 (ENSFCAG00000002787) #22	ST8SIA5 (ENSFCAG00000002786) #23	LOXHD1 (ENSFCAG00000002785) #24	RNF165 (ENSFCAG00000002784) #25	CD3H18orf25 (ENSFCAG00000030676) #26	HAUS1 (ENSFCAG00000003729) #27	ATP5F1A (ENSFCAG00000025952) #28	PSTPIP2 (ENSFCAG00000029753) #29	EPG5 (ENSFCAG00000010674) #30	SIGLEC15 (ENSFCAG00000031358) #31	SLC14A1 (ENSFCAG00000025903) #32	ENSFCAG00000010670 #33	SETBP1 (ENSFCAG00000007346) #34	ENSFCAG00000045259	SYT4 (ENSFCAG00000033996)	RIT2 (ENSFCAG00000010100)
Laurasiatheria_c	ANCESTRAL SPECIES	24	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00390000002428.a.g.b #19	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT01030000240358	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a.b #31	ENSGT01080000257333.E.o.a.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026
Chiroptera	ANCESTRAL SPECIES	26	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00950000183010.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00390000002428.a.g.b #19	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a.b #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Microchiroptera	ANCESTRAL SPECIES	26	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00390000002428.a.g.b #19	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a.b #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Microbat	DUPLICATION
Microbat	MODERN SPECIES	953	MBD1 (ENSMLUG00000008286)	ENSMLUG00000016723	MYO5B (ENSMLUG00000016701)	ACAA2 (ENSMLUG00000022960)	LIPG (ENSMLUG00000004113)	ENSMLUG00000029264	DYM (ENSMLUG00000003419)	SMAD7 (ENSMLUG00000016080)	CTIF (ENSMLUG00000003025)	ZBTB7C (ENSMLUG00000030000)	SMAD2 (ENSMLUG00000008857)	ENSMLUG00000028440 #16	ENSMLUG00000028696 #16	HDHD2 (ENSMLUG00000004087) #18	KATNAL2 (ENSMLUG00000004078) #21	ENSMLUG00000008902 #22	ST8SIA5 (ENSMLUG00000008890) #23	LOXHD1 (ENSMLUG00000008832) #24	RNF165 (ENSMLUG00000008813) #25	C18orf25 (ENSMLUG00000008806) #26	HAUS1 (ENSMLUG00000009879) #27	ATP5F1A (ENSMLUG00000009856) #28	PSTPIP2 (ENSMLUG00000009831) #29	EPG5 (ENSMLUG00000009791) #30	SIGLEC15 (ENSMLUG00000004894) #31	SLC14A1 (ENSMLUG00000004885) #32	SLC14A2 (ENSMLUG00000000990) #33	ENSMLUG00000013354 #34	ENSMLUG00000022722 #34	SYT4 (ENSMLUG00000016472)	PIK3C3 (ENSMLUG00000014471)
Microbat	MODERN SPECIES	1041	HEPHL1 (ENSMLUG00000008248)	ENSMLUG00000022473	VSTM5 (ENSMLUG00000029725)	MED17 (ENSMLUG00000011467)	C11orf54 (ENSMLUG00000011443)	ENSMLUG00000011431	CEP295 (ENSMLUG00000011383)	SMCO4 (ENSMLUG00000006975)	DEUP1 (ENSMLUG00000015504)	ENSMLUG00000030695	SLC36A4 (ENSMLUG00000005983)	ENSMLUG00000001084	MTNR1B (ENSMLUG00000011618)	FAT3 (ENSMLUG00000015758)	ENSMLUG00000025510	ENSMLUG00000025560 #22
Greater horseshoe bat	MODERN SPECIES	10	CFAP53 (ENSRFEG00010015022)	MYO5B (ENSRFEG00010014892)	ACAA2 (ENSRFEG00010014660)	LIPG (ENSRFEG00010014542)	C18orf32 (ENSRFEG00010014487)	DYM (ENSRFEG00010014390)	SMAD7 (ENSRFEG00010014226)	CTIF (ENSRFEG00010014128)	ZBTB7C (ENSRFEG00010014086)	SMAD2 (ENSRFEG00010013927)	SKOR2 (ENSRFEG00010013793) #16	IER3IP1 (ENSRFEG00010013708) #17	HDHD2 (ENSRFEG00010013605) #18	ENSRFEG00010013519 #19	KATNAL2 (ENSRFEG00010013030) #21	PIAS2 (ENSRFEG00010012942) #22	ENSRFEG00010012921	ST8SIA5 (ENSRFEG00010012732) #23	LOXHD1 (ENSRFEG00010010653) #24	RNF165 (ENSRFEG00010010311) #25	C18orf25 (ENSRFEG00010010226) #26	HAUS1 (ENSRFEG00010010163) #27	ATP5F1A (ENSRFEG00010010087) #28	PSTPIP2 (ENSRFEG00010010012) #29	EPG5 (ENSRFEG00010009969) #30	SIGLEC15 (ENSRFEG00010009873) #31	ENSRFEG00010009827	SLC14A1 (ENSRFEG00010009754) #32	SLC14A2 (ENSRFEG00010009717) #33	SETBP1 (ENSRFEG00010009647) #34	SYT4 (ENSRFEG00010009492)
Megabat	MODERN SPECIES	3197																PIAS2 (ENSPVAG00000016577) #22
Equus	ANCESTRAL SPECIES	36	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00390000002428.a.g.b #19	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT01030000240358	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402
Donkey	MODERN SPECIES	27	ACAA2 (ENSEASG00005005395)	LIPG (ENSEASG00005005399)	ENSEASG00005025626	ENSEASG00005031152	DYM (ENSEASG00005015845)	SMAD7 (ENSEASG00005016092)	CTIF (ENSEASG00005016094)	ZBTB7C (ENSEASG00005016097)	SMAD2 (ENSEASG00005016099)	SKOR2 (ENSEASG00005016101) #16	IER3IP1 (ENSEASG00005037358) #17	HDHD2 (ENSEASG00005016104) #18	ENSEASG00005028481 #19	KATNAL2 (ENSEASG00005016106) #21	ENSEASG00005016132	PIAS2 (ENSEASG00005016126) #22	ST8SIA5 (ENSEASG00005016136) #23	LOXHD1 (ENSEASG00005016151) #24	RNF165 (ENSEASG00005016163) #25	C18orf25 (ENSEASG00005016164) #26	HAUS1 (ENSEASG00005016165) #27	ATP5F1A (ENSEASG00005016183) #28	PSTPIP2 (ENSEASG00005016428) #29	SIGLEC15 (ENSEASG00005034343) #31	EPG5 (ENSEASG00005016455) #30	SLC14A1 (ENSEASG00005016489) #32	SLC14A2 (ENSEASG00005016499) #33	SETBP1 (ENSEASG00005016505) #34	SYT4 (ENSEASG00005016507)	RIT2 (ENSEASG00005031366)	PIK3C3 (ENSEASG00005016514)
Horse	MODERN SPECIES	29	ACAA2 (ENSECAG00000019394)	ENSECAG00000059774	LIPG (ENSECAG00000015140)	ENSECAG00000011547	C18orf32 (ENSECAG00000046374)	DYM (ENSECAG00000001651)	SMAD7 (ENSECAG00000020583)	CTIF (ENSECAG00000020473)	ZBTB7C (ENSECAG00000020456)	SMAD2 (ENSECAG00000015132)	SKOR2 (ENSECAG00000040113) #16	IER3IP1 (ENSECAG00000026829) #17	HDHD2 (ENSECAG00000012664) #18	ENSECAG00000010000 #19	KATNAL2 (ENSECAG00000010207) #21	PIAS2 (ENSECAG00000002816) #22	ST8SIA5 (ENSECAG00000023864) #23	LOXHD1 (ENSECAG00000022216) #24	RNF165 (ENSECAG00000021547) #25	ENSECAG00000031869	C18orf25 (ENSECAG00000020333) #26	HAUS1 (ENSECAG00000016553) #27	ATP5F1A (ENSECAG00000021561) #28	PSTPIP2 (ENSECAG00000019025) #29	EPG5 (ENSECAG00000002267) #30	SIGLEC15 (ENSECAG00000018025) #31	SLC14A1 (ENSECAG00000014487) #32	SLC14A2 (ENSECAG00000034918) #33	SETBP1 (ENSECAG00000019793) #34	SYT4 (ENSECAG00000017570)	RIT2 (ENSECAG00000016682)
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT01030000234539.a.a.b.b #22
Hedgehog	MODERN SPECIES	8411																PIAS2 (ENSEEUG00000005935) #22
Common shrew	MODERN SPECIES	6365																PIAS2 (ENSSARG00000008586) #22
Atlantogenata	ANCESTRAL SPECIES	22	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000164047.c.b	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402
Xenarthra	DUPLICATION
Xenarthra	ANCESTRAL SPECIES																	ENSGT01030000234539.a.a.b.b.fb #22
Sloth	MODERN SPECIES	7789																PIAS2 (ENSCHOG00000005911) #22
Armadillo	MODERN SPECIES	3631	TMEM229B (ENSDNOG00000032813)	ENSDNOG00000004245	PLEKHH1 (ENSDNOG00000004784)	PIGH (ENSDNOG00000004804)	ENSDNOG00000043235	ARG2 (ENSDNOG00000004808)	VTI1B (ENSDNOG00000003643)	RDH11 (ENSDNOG00000042867)	RDH12 (ENSDNOG00000003650)	ENSDNOG00000034723	ENSDNOG00000044979	RAD51B (ENSDNOG00000049492)	ZFP36L1 (ENSDNOG00000005159)	ENSDNOG00000048622	ACTN1 (ENSDNOG00000045722)	ENSDNOG00000042062 #22	DCAF5 (ENSDNOG00000018872)	EXD2 (ENSDNOG00000046970)	GALNT16 (ENSDNOG00000042275)	ERH (ENSDNOG00000034098)	SLC39A9 (ENSDNOG00000034206)	PLEKHD1 (ENSDNOG00000036900)	ENSDNOG00000012317	ENSDNOG00000039786	SUSD6 (ENSDNOG00000025953)	SRSF5 (ENSDNOG00000006160)	SLC10A1 (ENSDNOG00000006170)	ENSDNOG00000030920	SMOC1 (ENSDNOG00000007841)	SLC8A3 (ENSDNOG00000049755)
Xenarthra	ANCESTRAL SPECIES	212												ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b.gb #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33
Armadillo	MODERN SPECIES	4785												ENSDNOG00000025727 #16	IER3IP1 (ENSDNOG00000032201) #17	HDHD2 (ENSDNOG00000001000) #18	KATNAL2 (ENSDNOG00000001108) #21	ENSDNOG00000011855 #22	ST8SIA5 (ENSDNOG00000032248) #23	LOXHD1 (ENSDNOG00000005137) #24	RNF165 (ENSDNOG00000023586) #25	C18orf25 (ENSDNOG00000048603) #26	HAUS1 (ENSDNOG00000033685) #27	ENSDNOG00000006331 #28	PSTPIP2 (ENSDNOG00000037520) #29	ENSDNOG00000014995 #30	ENSDNOG00000035305 #30	SIGLEC15 (ENSDNOG00000014982) #31	SLC14A1 (ENSDNOG00000032760) #32	SLC14A2 (ENSDNOG00000017162) #33
Afrotheria	ANCESTRAL SPECIES	23	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000164047.c.b	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402
Afrotheria_a	ANCESTRAL SPECIES	22	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000164047.c.b	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.o.a #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402
Hyrax	MODERN SPECIES	7241																PIAS2 (ENSPCAG00000012046) #22
Elephant	MODERN SPECIES	375	MBD1 (ENSLAFG00000031328)	ENSLAFG00000015611	MYO5B (ENSLAFG00000015591)	ACAA2 (ENSLAFG00000022796)	LIPG (ENSLAFG00000003595)	RPL17 (ENSLAFG00000005569)	C18orf32 (ENSLAFG00000021351)	DYM (ENSLAFG00000017747)	SMAD7 (ENSLAFG00000008013)	CTIF (ENSLAFG00000016335)	ZBTB7C (ENSLAFG00000003436)	SMAD2 (ENSLAFG00000000143)	SKOR2 (ENSLAFG00000020778) #16	HDHD2 (ENSLAFG00000004419) #18	KATNAL2 (ENSLAFG00000004417) #21	PIAS2 (ENSLAFG00000018135) #22	ST8SIA5 (ENSLAFG00000010716) #23	LOXHD1 (ENSLAFG00000008500) #24	ENSLAFG00000030824	ENSLAFG00000008497 #25	C18orf25 (ENSLAFG00000013703) #26	ENSLAFG00000010897 #27	ENSLAFG00000031983 #27	ATP5F1A (ENSLAFG00000014779) #28	ENSLAFG00000002465 #29	EPG5 (ENSLAFG00000002464) #30	SLC14A1 (ENSLAFG00000009224) #32	SLC14A2 (ENSLAFG00000026942) #33	SETBP1 (ENSLAFG00000003458) #34	ENSLAFG00000012899	SYT4 (ENSLAFG00000010312)
Tenrec	MODERN SPECIES	7755																PIAS2 (ENSETEG00000019191) #22
Marsupialia	ANCESTRAL SPECIES	1	ENSGT01070000254624	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846.e #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Opossum	DUPLICATION
Opossum	DUPLICATION
Opossum	MODERN SPECIES	2	LIPG (ENSMODG00000003564)	ENSMODG00000003534	C18orf32 (ENSMODG00000003518)	ENSMODG00000050373	DYM (ENSMODG00000003506)	SMAD7 (ENSMODG00000039523)	CTIF (ENSMODG00000003464)	ENSMODG00000046916	ZBTB7C (ENSMODG00000003412)	ENSMODG00000042470	SMAD2 (ENSMODG00000003393)	SKOR2 (ENSMODG00000003381) #16	IER3IP1 (ENSMODG00000037588) #17	HDHD2 (ENSMODG00000044379) #18	KATNAL2 (ENSMODG00000003358) #21	ENSMODG00000003324 #22	ENSMODG00000048012	ST8SIA5 (ENSMODG00000003305) #23	LOXHD1 (ENSMODG00000003285) #24	RNF165 (ENSMODG00000003260) #25	ENSMODG00000043074	C18orf25 (ENSMODG00000003250) #26	HAUS1 (ENSMODG00000003208) #27	ATP5F1A (ENSMODG00000003241) #28	PSTPIP2 (ENSMODG00000003193) #29	ENSMODG00000025419	EPG5 (ENSMODG00000025166) #30	ENSMODG00000003137 #31	ENSMODG00000040480 #32	ENSMODG00000045220 #32	SLC14A2 (ENSMODG00000045335) #33
Opossum	MODERN SPECIES	1	FAXC (ENSMODG00000018119)	FBXL4 (ENSMODG00000018121)	POU3F2 (ENSMODG00000018122)	ENSMODG00000039437	ENSMODG00000018124	MMS22L (ENSMODG00000018127)	KLHL32 (ENSMODG00000018129)	ENSMODG00000038074	GPR63 (ENSMODG00000018132)	ENSMODG00000018134	UFL1 (ENSMODG00000018137)	FUT9 (ENSMODG00000023384)	ENSMODG00000023385	MANEA (ENSMODG00000018142)	ENSMODG00000037917	ENSMODG00000046593 #22	EPHA7 (ENSMODG00000018150)	ENSMODG00000044142	ENSMODG00000018165	ENSMODG00000023387	MAP3K7 (ENSMODG00000018170)	BACH2 (ENSMODG00000018176)	GJA10 (ENSMODG00000018178)	CASP8AP2 (ENSMODG00000018180)	ENSMODG00000036973	MDN1 (ENSMODG00000018213)	LYRM2 (ENSMODG00000018270)	ANKRD6 (ENSMODG00000018273)	RRAGD (ENSMODG00000018275)	ENSMODG00000018277	GABRR2 (ENSMODG00000018278)
Opossum	MODERN SPECIES	2	B3GNT3 (ENSMODG00000019158)	FCHO1 (ENSMODG00000028655)	MAP1S (ENSMODG00000019153)	ENSMODG00000019151	NCLN (ENSMODG00000019149)	S1PR4 (ENSMODG00000019145)	GNA15 (ENSMODG00000019144)	GNA11 (ENSMODG00000019142)	ENSMODG00000019140	SCARB1 (ENSMODG00000015688)	DHX37 (ENSMODG00000015681)	ENSMODG00000048892	AACS (ENSMODG00000015672)	ENSMODG00000015657	ENSMODG00000050318	ENSMODG00000015653 #22	TMEM132C (ENSMODG00000015648)	SLC15A4 (ENSMODG00000015645)	ENSMODG00000037887	GLT1D1 (ENSMODG00000015634)	ENSMODG00000045547	FZD10 (ENSMODG00000015625)	PIWIL1 (ENSMODG00000015619)	ENSMODG00000045138	RIMBP2 (ENSMODG00000015603)	STX2 (ENSMODG00000015598)	ENSMODG00000036415	ENSMODG00000015591	ENSMODG00000028918	ENSMODG00000039509	SFSWAP (ENSMODG00000015581)
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT01070000254624	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.a.a.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846.e #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Diprotodontia	ANCESTRAL SPECIES	1	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.a.a.b	ENSGT00950000183010.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846.e #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Diprotodontia_a	ANCESTRAL SPECIES		ENSGT01070000254624	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.a.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846.e #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E #31	ENSGT00390000018729.a.a #32	ENSGT00390000018729.a.b #33	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
koala	MODERN SPECIES	22				LIPG (ENSPCIG00000028229)	ENSPCIG00000028230	C18orf32 (ENSPCIG00000032291)	DYM (ENSPCIG00000031532)	SMAD7 (ENSPCIG00000019168)	CTIF (ENSPCIG00000026247)	ZBTB7C (ENSPCIG00000015685)	SMAD2 (ENSPCIG00000015690)	SKOR2 (ENSPCIG00000006700) #16	IER3IP1 (ENSPCIG00000033187) #17	HDHD2 (ENSPCIG00000006706) #18	KATNAL2 (ENSPCIG00000006712) #21	PIAS2 (ENSPCIG00000006717) #22	ENSPCIG00000006722 #23	ENSPCIG00000006735 #24	RNF165 (ENSPCIG00000006802) #25	C18orf25 (ENSPCIG00000006809) #26	HAUS1 (ENSPCIG00000006819) #27	ENSPCIG00000006824 #28	ENSPCIG00000006831	PSTPIP2 (ENSPCIG00000026564) #29	EPG5 (ENSPCIG00000019029) #30	ENSPCIG00000019325 #31	SLC14A1 (ENSPCIG00000019326) #32	SLC14A2 (ENSPCIG00000019330) #33	ENSPCIG00000019335	ENSPCIG00000011742	SETBP1 (ENSPCIG00000011757) #34
Common wonbat	MODERN SPECIES	1028	ENSVURG00010000841	ENSVURG00010000828	MYO5B (ENSVURG00010000687)	ACAA2 (ENSVURG00010000570)	LIPG (ENSVURG00010000510)	C18orf32 (ENSVURG00010000458)	DYM (ENSVURG00010000407)	SMAD7 (ENSVURG00010000339)	CTIF (ENSVURG00010000308)	ZBTB7C (ENSVURG00010000266)	SMAD2 (ENSVURG00010000218)	SKOR2 (ENSVURG00010000155) #16	IER3IP1 (ENSVURG00010000126) #17	HDHD2 (ENSVURG00010000102) #18	KATNAL2 (ENSVURG00010022300) #21	PIAS2 (ENSVURG00010022283) #22	ST8SIA5 (ENSVURG00010022274) #23	ENSVURG00010022268 #24	ENSVURG00010022265 #24	RNF165 (ENSVURG00010022261) #25	C18orf25 (ENSVURG00010022255) #26	HAUS1 (ENSVURG00010022251) #27	ENSVURG00010022245 #28	PSTPIP2 (ENSVURG00010022237) #29	EPG5 (ENSVURG00010022212) #30	ENSVURG00010022201 #31	SLC14A1 (ENSVURG00010022183) #32	SLC14A2 (ENSVURG00010022169) #33	ENSVURG00010022157	SETBP1 (ENSVURG00010022154) #34	ENSVURG00010022140
Wallaby	MODERN SPECIES	180																ENSMEUG00000013788 #22
Tasmanian devil	MODERN SPECIES		ENSSHAG00000010062	ENSSHAG00000003364	ACAA2 (ENSSHAG00000001241)	LIPG (ENSSHAG00000004911)	ENSSHAG00000003060	ENSSHAG00000030929	DYM (ENSSHAG00000001181)	SMAD7 (ENSSHAG00000017444)	CTIF (ENSSHAG00000027815)	ZBTB7C (ENSSHAG00000024277)	SMAD2 (ENSSHAG00000012837)	ENSSHAG00000012107	SKOR2 (ENSSHAG00000025447) #16	HDHD2 (ENSSHAG00000024217) #18	KATNAL2 (ENSSHAG00000003042) #21	PIAS2 (ENSSHAG00000005954) #22	ST8SIA5 (ENSSHAG00000021657) #23	ENSSHAG00000017868 #24	RNF165 (ENSSHAG00000017805) #25	C18orf25 (ENSSHAG00000017414) #26	HAUS1 (ENSSHAG00000030289) #27	ENSSHAG00000017177 #28	PSTPIP2 (ENSSHAG00000017036) #29	EPG5 (ENSSHAG00000016721) #30	ENSSHAG00000016659 #31	SLC14A1 (ENSSHAG00000032087) #32	SLC14A2 (ENSSHAG00000016114) #33	SETBP1 (ENSSHAG00000011290) #34	SYT4 (ENSSHAG00000030482)	RIT2 (ENSSHAG00000027427)	ENSSHAG00000030977
Platypus	MODERN SPECIES	14	ENSOANG00000008126	MYO5B (ENSOANG00000008127)	ACAA2 (ENSOANG00000002559)	LIPG (ENSOANG00000001131)	ENSOANG00000002910	DYM (ENSOANG00000007612)	ENSOANG00000007611	CTIF (ENSOANG00000001337)	ZBTB7C (ENSOANG00000005929)	SMAD2 (ENSOANG00000001971)	SKOR2 (ENSOANG00000038832) #16	IER3IP1 (ENSOANG00000045983) #17	ENSOANG00000042577	HDHD2 (ENSOANG00000012019) #18	KATNAL2 (ENSOANG00000012018) #21	PIAS2 (ENSOANG00000012017) #22	ST8SIA5 (ENSOANG00000014835) #23	LOXHD1 (ENSOANG00000014833) #24	RNF165 (ENSOANG00000014831) #25	C18orf25 (ENSOANG00000004994) #26	ENSOANG00000048405	UBAP2 (ENSOANG00000010219)	UBE2R2 (ENSOANG00000036151)	NOL6 (ENSOANG00000010217)	AQP3 (ENSOANG00000014661)	ENSOANG00000045749	TPGS2 (ENSOANG00000004563)	ENSOANG00000021740	ENSOANG00000045275	ENSOANG00000045452	ENSOANG00000038440
Sauria	ANCESTRAL SPECIES	5	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000178986	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E #31	ENSGT00390000018729.a.d #32	ENSGT00390000018729.a.c #32	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Archelosauria	ANCESTRAL SPECIES	7	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E #31	ENSGT00390000018729.a.d #32	ENSGT00390000018729.a.c #32	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Cryptodira	ANCESTRAL SPECIES	9	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.n #31	ENSGT00390000018729.a.d #32	ENSGT00390000018729.a.c #32	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Testudinoidea	ANCESTRAL SPECIES	7	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.n #31	ENSGT00390000018729.a.d #32	ENSGT00390000018729.a.c.b #32	ENSGT00390000018729.a.c.a #32	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402
Emydidae	ANCESTRAL SPECIES	7	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.n #31	ENSGT00390000018729.a.d #32	ENSGT00390000018729.a.c.b #32	ENSGT00390000018729.a.c.a #32	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402
Three-toed box turtle	MODERN SPECIES	29	MYO5B (ENSTMTG00000001656)	ACAA2 (ENSTMTG00000001632)	LIPG (ENSTMTG00000001568)	ENSTMTG00000001521	C18orf32 (ENSTMTG00000001516)	DYM (ENSTMTG00000001505)	ENSTMTG00000001494	SMAD7 (ENSTMTG00000001490)	CTIF (ENSTMTG00000001480)	ZBTB7C (ENSTMTG00000001470)	SMAD2 (ENSTMTG00000001451)	SKOR2 (ENSTMTG00000001437) #16	IER3IP1 (ENSTMTG00000001428) #17	HDHD2 (ENSTMTG00000001421) #18	KATNAL2 (ENSTMTG00000001412) #21	PIAS2 (ENSTMTG00000001368) #22	ENSTMTG00000001347	ST8SIA5 (ENSTMTG00000001323) #23	LOXHD1 (ENSTMTG00000001168) #24	RNF165 (ENSTMTG00000001099) #25	ENSTMTG00000001086	C18orf25 (ENSTMTG00000001078) #26	ENSTMTG00000001068	HAUS1 (ENSTMTG00000001059) #27	ATP5F1A (ENSTMTG00000001043) #28	PSTPIP2 (ENSTMTG00000001028) #29	EPG5 (ENSTMTG00000000989) #30	ENSTMTG00000000964 #31	ENSTMTG00000000956 #32	ENSTMTG00000000935 #32	ENSTMTG00000000922 #32
painted turtle	MODERN SPECIES	15	ENSCPBG00000025621	MYO5B (ENSCPBG00000025623)	ACAA2 (ENSCPBG00000025630)	LIPG (ENSCPBG00000025633)	ENSCPBG00000025638	C18orf32 (ENSCPBG00000025643)	DYM (ENSCPBG00000025646)	SMAD7 (ENSCPBG00000025649)	CTIF (ENSCPBG00000025654)	ZBTB7C (ENSCPBG00000025669)	SMAD2 (ENSCPBG00000025672)	SKOR2 (ENSCPBG00000025680) #16	IER3IP1 (ENSCPBG00000025681) #17	HDHD2 (ENSCPBG00000025683) #18	KATNAL2 (ENSCPBG00000025685) #21	PIAS2 (ENSCPBG00000025688) #22	ENSCPBG00000025689	ST8SIA5 (ENSCPBG00000025690) #23	LOXHD1 (ENSCPBG00000025693) #24	RNF165 (ENSCPBG00000025704) #25	C18orf25 (ENSCPBG00000025709) #26	HAUS1 (ENSCPBG00000025713) #27	ATP5F1A (ENSCPBG00000025716) #28	PSTPIP2 (ENSCPBG00000025723) #29	EPG5 (ENSCPBG00000025732) #30	ENSCPBG00000025735 #31	ENSCPBG00000025736	ENSCPBG00000025738 #32	ENSCPBG00000025740 #32	SETBP1 (ENSCPBG00000025743) #34	ENSCPBG00000025758
Testudinidae	ANCESTRAL SPECIES	30	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E.n #31	ENSGT00390000018729.a.d #32	ENSGT00390000018729.a.c.b #32	ENSGT00390000018729.a.c.a #32	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402
Abingdon island giant tortoise	MODERN SPECIES	2042											ZBTB7C (ENSCABG00000020683)	SMAD2 (ENSCABG00000020680)	IER3IP1 (ENSCABG00000020676) #17	HDHD2 (ENSCABG00000020673) #18	KATNAL2 (ENSCABG00000020670) #21	PIAS2 (ENSCABG00000020669) #22	ENSCABG00000020668	ST8SIA5 (ENSCABG00000020667) #23
Goode s thornscrub tortoise	MODERN SPECIES	20	ACAA2 (ENSGEVG00005019715)	LIPG (ENSGEVG00005019740)	ENSGEVG00005019793	C18orf32 (ENSGEVG00005019829)	DYM (ENSGEVG00005019836)	SMAD7 (ENSGEVG00005019841)	CTIF (ENSGEVG00005019849)	ENSGEVG00005019871	ZBTB7C (ENSGEVG00005019877)	ENSGEVG00005019880	SMAD2 (ENSGEVG00005019888)	SKOR2 (ENSGEVG00005019904) #16	IER3IP1 (ENSGEVG00005019910) #17	HDHD2 (ENSGEVG00005019914) #18	KATNAL2 (ENSGEVG00005019929) #21	PIAS2 (ENSGEVG00005019940) #22	ENSGEVG00005019963	ST8SIA5 (ENSGEVG00005020035) #23	LOXHD1 (ENSGEVG00005020075) #24	ENSGEVG00005020105	C18orf25 (ENSGEVG00005020108) #26	HAUS1 (ENSGEVG00005020111) #27	ENSGEVG00005020123	ATP5F1A (ENSGEVG00005020124) #28	PSTPIP2 (ENSGEVG00005020128) #29	EPG5 (ENSGEVG00005020148) #30	ENSGEVG00005020174 #31	ENSGEVG00005020179 #32	ENSGEVG00005006248 #32	ENSGEVG00005006281 #32	SETBP1 (ENSGEVG00005006385) #34
Chinese turtle	MODERN SPECIES	2138	MYO5B (ENSPSIG00000005153)	ACAA2 (ENSPSIG00000005335)	LIPG (ENSPSIG00000005431)	ENSPSIG00000005516	C18orf32 (ENSPSIG00000005560)	DYM (ENSPSIG00000005625)	SMAD7 (ENSPSIG00000006254)	CTIF (ENSPSIG00000006508)	ENSPSIG00000006516	ENSPSIG00000006540	ENSPSIG00000000589	ZBTB7C (ENSPSIG00000006571)	SMAD2 (ENSPSIG00000006646)	HDHD2 (ENSPSIG00000007538) #18	KATNAL2 (ENSPSIG00000007746) #21	PIAS2 (ENSPSIG00000007898) #22	ST8SIA5 (ENSPSIG00000007901) #23	ENSPSIG00000008936 #24	RNF165 (ENSPSIG00000008948) #25	C18orf25 (ENSPSIG00000009048) #26	HAUS1 (ENSPSIG00000009054) #27	ATP5F1A (ENSPSIG00000009091) #28	PSTPIP2 (ENSPSIG00000009919) #29	EPG5 (ENSPSIG00000010110) #30	ENSPSIG00000011149 #31	ENSPSIG00000011549 #32	ENSPSIG00000012220	SETBP1 (ENSPSIG00000012250) #34	SYT4 (ENSPSIG00000012268)	RIT2 (ENSPSIG00000012276)	PIK3C3 (ENSPSIG00000012282)
Archosauria	ANCESTRAL SPECIES	1	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E #31	ENSGT00390000018729.a.d #32	ENSGT00390000018729.a.c #32	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Aves	ANCESTRAL SPECIES	4	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E #31	ENSGT00390000018729.a.d #32	ENSGT00390000018729.a.c #32	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Neognathae	ANCESTRAL SPECIES	12	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a.d	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846.eb.b #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E #31	ENSGT00390000018729.a.d #32	ENSGT00390000018729.a.c #32	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Neognathae_b	DUPLICATION
Neognathae_b	DUPLICATION
Neognathae_b	ANCESTRAL SPECIES	5	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a.d	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b.hb.a #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167.c.a #26	ENSGT00390000006029 #27	ENSGT00550000074846.eb.b #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E #31	ENSGT00390000018729.a.d #32	ENSGT00390000018729.a.c #32	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Passeriformes	ANCESTRAL SPECIES	7	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a.d	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b.hb.a #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167.c.a #26	ENSGT00390000006029 #27	ENSGT00550000074846.eb.b #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E #31	ENSGT00390000018729.a.d #32	ENSGT00390000018729.a.c #32	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Great tit	MODERN SPECIES	642	ENSPMJG00000002582	MYO5B (ENSPMJG00000002662)	ACAA2 (ENSPMJG00000002693)	LIPG (ENSPMJG00000002703)	ENSPMJG00000002708	C18orf32 (ENSPMJG00000002712)	DYM (ENSPMJG00000002819)	SMAD7 (ENSPMJG00000002909)	CTIF (ENSPMJG00000002914)	ZBTB7C (ENSPMJG00000002973)	SMAD2 (ENSPMJG00000002989)	SKOR2 (ENSPMJG00000003106) #16	IER3IP1 (ENSPMJG00000003108) #17	HDHD2 (ENSPMJG00000003109) #18	KATNAL2 (ENSPMJG00000003284) #21	PIAS2 (ENSPMJG00000003313) #22	ST8SIA5 (ENSPMJG00000003351) #23	ENSPMJG00000003355	LOXHD1 (ENSPMJG00000003381) #24	RNF165 (ENSPMJG00000003419) #25	C18orf25 (ENSPMJG00000003436) #26	HAUS1 (ENSPMJG00000003444) #27	ATP5F1A (ENSPMJG00000003455) #28	PSTPIP2 (ENSPMJG00000004774) #29	EPG5 (ENSPMJG00000004806) #30	ENSPMJG00000004850 #31	ENSPMJG00000004854 #32	ENSPMJG00000004863 #32	SETBP1 (ENSPMJG00000004924) #34	SYT4 (ENSPMJG00000004942)	RIT2 (ENSPMJG00000004964)
Passeriformes_d	ANCESTRAL SPECIES	6	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872.j	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a.d	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b.hb.a #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167.c.a #26	ENSGT00390000006029 #27	ENSGT00550000074846.eb.b #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E #31	ENSGT00390000018729.a.d #32	ENSGT00390000018729.a.c #32	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Passeriformes_g	ANCESTRAL SPECIES	7	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872.j	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a.d	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b.hb.a #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167.c.a #26	ENSGT00390000006029 #27	ENSGT00550000074846.eb.b #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E #31	ENSGT00390000018729.a.d #32	ENSGT00390000018729.a.c #32	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Passeroidea	ANCESTRAL SPECIES	27	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872.j	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a.d	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b.hb.a #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167.c.a #26	ENSGT00390000006029 #27	ENSGT00550000074846.eb.b #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E #31	ENSGT00390000018729.a.d #32	ENSGT00390000018729.a.c #32	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Common canary	MODERN SPECIES	32	ENSSCAG00000014408	ENSSCAG00000014412	MYO5B (ENSSCAG00000015157)	ACAA2 (ENSSCAG00000016211)	LIPG (ENSSCAG00000016215)	ENSSCAG00000016220	ENSSCAG00000016226	DYM (ENSSCAG00000016230)	SMAD7 (ENSSCAG00000016234)	ENSSCAG00000016237	ZBTB7C (ENSSCAG00000016243)	ENSSCAG00000016249	IER3IP1 (ENSSCAG00000016254) #17	HDHD2 (ENSSCAG00000016258) #18	KATNAL2 (ENSSCAG00000016261) #21	ENSSCAG00000016263 #22	ST8SIA5 (ENSSCAG00000016270) #23	LOXHD1 (ENSSCAG00000016279) #24	RNF165 (ENSSCAG00000016296) #25	ENSSCAG00000016301 #26	HAUS1 (ENSSCAG00000016303) #27	ENSSCAG00000016307 #28	PSTPIP2 (ENSSCAG00000016312) #29	EPG5 (ENSSCAG00000016319) #30	ENSSCAG00000016324 #31	ENSSCAG00000016329 #32	ENSSCAG00000016338 #32	SETBP1 (ENSSCAG00000016346) #34	SYT4 (ENSSCAG00000016351)	RIT2 (ENSSCAG00000016353)	ENSSCAG00000016356
Zebra finch	MODERN SPECIES	104	ENSTGUG00000018125	ENSTGUG00000000072	ENSTGUG00000000071	ENSTGUG00000028962	RPL17 (ENSTGUG00000028072)	ENSTGUG00000000043	DYM (ENSTGUG00000000035)	SMAD7 (ENSTGUG00000000034)	CTIF (ENSTGUG00000000030)	ZBTB7C (ENSTGUG00000000028)	SMAD2 (ENSTGUG00000000016)	ENSTGUG00000014263 #16	IER3IP1 (ENSTGUG00000028694) #17	HDHD2 (ENSTGUG00000028684) #18	KATNAL2 (ENSTGUG00000000013) #21	PIAS2 (ENSTGUG00000000006) #22
Medium ground finch	MODERN SPECIES	68	ENSGFOG00000013168	ENSGFOG00000013164	MYO5B (ENSGFOG00000013103)	ACAA2 (ENSGFOG00000013087)	LIPG (ENSGFOG00000013083)	ENSGFOG00000013078	ENSGFOG00000013074	DYM (ENSGFOG00000013055)	SMAD7 (ENSGFOG00000013050)	CTIF (ENSGFOG00000013039)	ZBTB7C (ENSGFOG00000013033)	ENSGFOG00000013025	IER3IP1 (ENSGFOG00000013022) #17	HDHD2 (ENSGFOG00000013020) #18	KATNAL2 (ENSGFOG00000013015) #21	ENSGFOG00000013009 #22	ST8SIA5 (ENSGFOG00000013005) #23	LOXHD1 (ENSGFOG00000012988) #24	RNF165 (ENSGFOG00000012981) #25	ENSGFOG00000012977	ENSGFOG00000012973 #26	HAUS1 (ENSGFOG00000012970) #27	ENSGFOG00000012961 #28	PSTPIP2 (ENSGFOG00000012952) #29	EPG5 (ENSGFOG00000012823) #30	ENSGFOG00000012800 #31	ENSGFOG00000012786 #32	SETBP1 (ENSGFOG00000012775) #34	SYT4 (ENSGFOG00000012768)	RIT2 (ENSGFOG00000012761)
Flycatcher	MODERN SPECIES	561	ENSFALG00000009012	MYO5B (ENSFALG00000008996)	ACAA2 (ENSFALG00000008979)	LIPG (ENSFALG00000008973)	ENSFALG00000008965	C18orf32 (ENSFALG00000008961)	DYM (ENSFALG00000008953)	SMAD7 (ENSFALG00000008945)	CTIF (ENSFALG00000024197)	ENSFALG00000028976	ZBTB7C (ENSFALG00000008940)	SMAD2 (ENSFALG00000008934)	IER3IP1 (ENSFALG00000026006) #17	HDHD2 (ENSFALG00000008930) #18	KATNAL2 (ENSFALG00000008928) #21	PIAS2 (ENSFALG00000008918) #22	ST8SIA5 (ENSFALG00000008899) #23	LOXHD1 (ENSFALG00000008897) #24	RNF165 (ENSFALG00000023345) #25	C18orf25 (ENSFALG00000008886) #26	HAUS1 (ENSFALG00000008884) #27	ATP5F1A (ENSFALG00000008875) #28	EPG5 (ENSFALG00000008862) #30	ENSFALG00000008861 #31	ENSFALG00000024024 #32	ENSFALG00000008859 #32	SETBP1 (ENSFALG00000008857) #34	SYT4 (ENSFALG00000008854)	RIT2 (ENSFALG00000008852)	PIK3C3 (ENSFALG00000008849)	ENSFALG00000009186
Neognathae_c	ANCESTRAL SPECIES	2	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b.g	ENSGT00940000159814.b	ENSGT00940000153499.a.d	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b.hb.a #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167.d #26	ENSGT00390000006029 #27	ENSGT00550000074846.db #28	ENSGT00390000016167.c.b #26	ENSGT00940000167769	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E #31	ENSGT00390000018729.a.d #32	ENSGT00390000018729.a.c #32	ENSGT00940000158784 #34	ENSGT00940000159026.d
Kakapo	MODERN SPECIES	19	ENSSHBG00005011586	MYO5B (ENSSHBG00005011309)	ACAA2 (ENSSHBG00005011224)	LIPG (ENSSHBG00005011192)	ENSSHBG00005011099	C18orf32 (ENSSHBG00005011080)	DYM (ENSSHBG00005011046)	SMAD7 (ENSSHBG00005011025)	ENSSHBG00005011002	ZBTB7C (ENSSHBG00005010973)	ENSSHBG00005010919	ENSSHBG00005010880 #16	IER3IP1 (ENSSHBG00005010867) #17	HDHD2 (ENSSHBG00005010840) #18	KATNAL2 (ENSSHBG00005010077) #21	ENSSHBG00005009962 #22	ENSSHBG00005009938	ST8SIA5 (ENSSHBG00005009922) #23	LOXHD1 (ENSSHBG00005008933) #24	RNF165 (ENSSHBG00005008844) #25	ENSSHBG00005008835	ENSSHBG00005008832 #26	ENSSHBG00005008822	PSTPIP2 (ENSSHBG00005008805) #29	ENSSHBG00005008791 #28	EPG5 (ENSSHBG00005008678) #30	ENSSHBG00005008642 #31	ENSSHBG00005008633 #32	ENSSHBG00005008572 #32	ENSSHBG00005008557 #34	ENSSHBG00005008553
Neognathae_b	ANCESTRAL SPECIES																	ENSGT01030000234539.a.a.b.b.hb.b #22
Passeriformes	ANCESTRAL SPECIES																	ENSGT01030000234539.a.a.b.b.hb.b #22
Passeriformes_d	ANCESTRAL SPECIES																	ENSGT01030000234539.a.a.b.b.hb.b #22
Passeriformes_g	ANCESTRAL SPECIES																	ENSGT01030000234539.a.a.b.b.hb.b #22
Medium ground finch	MODERN SPECIES	466																ENSGFOG00000002714 #22
Passeroidea	ANCESTRAL SPECIES																	ENSGT01030000234539.a.a.b.b.hb.b #22
Common canary	MODERN SPECIES	350																ENSSCAG00000008159 #22
Neognathae_c	ANCESTRAL SPECIES																	ENSGT01030000234539.a.a.b.b.hb.b #22
Kakapo	DUPLICATION
Kakapo	MODERN SPECIES	4	ENSSHBG00005001019	ENSSHBG00005001021	ENSSHBG00005001022	ENSSHBG00005001024	ENSSHBG00005001027	ENSSHBG00005001030	ENSSHBG00005001032	ENSSHBG00005001033	ENSSHBG00005001035	ENSSHBG00005001037	ENSSHBG00005001040	ENSSHBG00005001041	ENSSHBG00005001042	ENSSHBG00005001044	ENSSHBG00005001048	ENSSHBG00005001049 #22	ENSSHBG00005001050 #22	ENSSHBG00005001051	ENSSHBG00005001056	ENSSHBG00005001057	ENSSHBG00005001058	ENSSHBG00005001059	ENSSHBG00005001060	ENSSHBG00005001061	ENSSHBG00005001062	ENSSHBG00005001063	ENSSHBG00005001064	ENSSHBG00005001065	ENSSHBG00005001066	ENSSHBG00005001067	ENSSHBG00005001070
Kakapo	MODERN SPECIES	4	ENSSHBG00005001021	ENSSHBG00005001022	ENSSHBG00005001024	ENSSHBG00005001027	ENSSHBG00005001030	ENSSHBG00005001032	ENSSHBG00005001033	ENSSHBG00005001035	ENSSHBG00005001037	ENSSHBG00005001040	ENSSHBG00005001041	ENSSHBG00005001042	ENSSHBG00005001044	ENSSHBG00005001048	ENSSHBG00005001049 #22	ENSSHBG00005001050 #22	ENSSHBG00005001051	ENSSHBG00005001056	ENSSHBG00005001057	ENSSHBG00005001058	ENSSHBG00005001059	ENSSHBG00005001060	ENSSHBG00005001061	ENSSHBG00005001062	ENSSHBG00005001063	ENSSHBG00005001064	ENSSHBG00005001065	ENSSHBG00005001066	ENSSHBG00005001067	ENSSHBG00005001070	ENSSHBG00005001075
Neognathae_b	ANCESTRAL SPECIES																	ENSGT01030000234539.a.a.b.b.ib #22
Neognathae_c	ANCESTRAL SPECIES																	ENSGT01030000234539.a.a.b.b.ib #22
Golden eagle	MODERN SPECIES	91	ENSACCG00020009495	MYO5B (ENSACCG00020016656)	ACAA2 (ENSACCG00020016573)	LIPG (ENSACCG00020016557)	RPL17 (ENSACCG00020016537)	C18orf32 (ENSACCG00020016535)	DYM (ENSACCG00020016531)	SMAD7 (ENSACCG00020016530)	CTIF (ENSACCG00020016528)	ZBTB7C (ENSACCG00020016526)	SMAD2 (ENSACCG00020016518)	SKOR2 (ENSACCG00020016513) #16	IER3IP1 (ENSACCG00020016510) #17	HDHD2 (ENSACCG00020016506) #18	KATNAL2 (ENSACCG00020016503) #21	PIAS2 (ENSACCG00020016500) #22	ENSACCG00020016495	ST8SIA5 (ENSACCG00020016492) #23	LOXHD1 (ENSACCG00020016482) #24	RNF165 (ENSACCG00020016454) #25	ENSACCG00020016448	C18orf25 (ENSACCG00020016442) #26	HAUS1 (ENSACCG00020016407) #27	ATP5F1A (ENSACCG00020016399) #28	PSTPIP2 (ENSACCG00020016388) #29	EPG5 (ENSACCG00020016353) #30	ENSACCG00020016332 #31	ENSACCG00020016311 #32	ENSACCG00020016281 #32	SETBP1 (ENSACCG00020016273) #34	SYT4 (ENSACCG00020016267)
Galloanserae	ANCESTRAL SPECIES	11	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a.d	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846.eb.b #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E #31	ENSGT00390000018729.a.d #32	ENSGT00390000018729.a.c #32	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Anatidae	ANCESTRAL SPECIES	55	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a.c	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846.eb.b #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E #31	ENSGT00390000018729.a.d #32	ENSGT00390000018729.a.c #32	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Duck	MODERN SPECIES	4281	MYO5B (ENSAPLG00000005427)	ACAA2 (ENSAPLG00000006058)	LIPG (ENSAPLG00000008809)	ENSAPLG00000008451	C18orf32 (ENSAPLG00000017090)	DYM (ENSAPLG00000007759)	ENSAPLG00000022343	SMAD7 (ENSAPLG00000001268)	CTIF (ENSAPLG00000014486)	ZBTB7C (ENSAPLG00000016660)	SMAD2 (ENSAPLG00000004964)	SKOR2 (ENSAPLG00000022487) #16	IER3IP1 (ENSAPLG00000018295) #17	HDHD2 (ENSAPLG00000004974) #18	KATNAL2 (ENSAPLG00000005005) #21	PIAS2 (ENSAPLG00000005190) #22	ENSAPLG00000022068	ST8SIA5 (ENSAPLG00000011069) #23	LOXHD1 (ENSAPLG00000010718) #24	ENSAPLG00000018736	RNF165 (ENSAPLG00000006619) #25	C18orf25 (ENSAPLG00000017723) #26	HAUS1 (ENSAPLG00000011232) #27	ATP5F1A (ENSAPLG00000011512) #28	PSTPIP2 (ENSAPLG00000011930) #29	EPG5 (ENSAPLG00000011964) #30	ENSAPLG00000024300 #31	ENSAPLG00000024359 #32	ENSAPLG00000012208 #32	SETBP1 (ENSAPLG00000017129) #34	SYT4 (ENSAPLG00000011860)
Pink-footed goose	MODERN SPECIES	346														ENSABRG00000019488	KATNAL2 (ENSABRG00000019473) #21	PIAS2 (ENSABRG00000019457) #22	ST8SIA5 (ENSABRG00000019447) #23	ENSABRG00000019443 #24	RNF165 (ENSABRG00000019433) #25	C18orf25 (ENSABRG00000019430) #26
Phasianidae	ANCESTRAL SPECIES	5	ENSGT00950000182938.b.b.b.b.b.b	ENSGT00940000159146	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872.k	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a.d.a.b	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167.a #26	ENSGT00390000006029 #27	ENSGT00550000074846.eb.b #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E #31	ENSGT00390000018729.a.d #32	ENSGT00390000018729.a.c #32	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Japanese quail	MODERN SPECIES	699	CPLX4 (ENSCJPG00005004910)	LMAN1 (ENSCJPG00005004911)	ACAA2 (ENSCJPG00005004912)	LIPG (ENSCJPG00005004913)	ENSCJPG00005004917	C18orf32 (ENSCJPG00005004922)	DYM (ENSCJPG00005004924)	SMAD7 (ENSCJPG00005004928)	CTIF (ENSCJPG00005004929)	ZBTB7C (ENSCJPG00005004933)	SMAD2 (ENSCJPG00005004935)	SKOR2 (ENSCJPG00005004937) #16	IER3IP1 (ENSCJPG00005004943) #17	HDHD2 (ENSCJPG00005004947) #18	KATNAL2 (ENSCJPG00005004948) #21	PIAS2 (ENSCJPG00005004954) #22	ST8SIA5 (ENSCJPG00005005152) #23	LOXHD1 (ENSCJPG00005005160) #24	RNF165 (ENSCJPG00005005197) #25	C18orf25 (ENSCJPG00005005205) #26	HAUS1 (ENSCJPG00005005206) #27	ATP5F1A (ENSCJPG00005005208) #28	PSTPIP2 (ENSCJPG00005005209) #29	EPG5 (ENSCJPG00005005256) #30	ENSCJPG00005005293 #31	ENSCJPG00005005294 #32	SETBP1 (ENSCJPG00005005325) #34	SYT4 (ENSCJPG00005005351)	RIT2 (ENSCJPG00005005369)	PIK3C3 (ENSCJPG00005005375)	ENSCJPG00005005432
Phasianidae_b	ANCESTRAL SPECIES	5	ENSGT00950000182938.b.b.b.b.b.b	ENSGT00940000159146	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872.k	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a.d.a.b	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167.a #26	ENSGT00390000006029 #27	ENSGT00550000074846.eb.b #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E #31	ENSGT00390000018729.a.d #32	ENSGT00390000018729.a.c #32	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943
Turkey	DUPLICATION
Turkey	MODERN SPECIES	1299	ENSMGAG00000001140	NEDD4L (ENSMGAG00000000935)	ENSMGAG00000021263	ALPK2 (ENSMGAG00000018725)	ENSMGAG00000001342	MALT1 (ENSMGAG00000001082)	ENSMGAG00000001162	SEC11C (ENSMGAG00000001165)	ENSMGAG00000022342	CTIF (ENSMGAG00000021290)	ZBTB7C (ENSMGAG00000001366)	SMAD2 (ENSMGAG00000001351)	IER3IP1 (ENSMGAG00000020998) #17	HDHD2 (ENSMGAG00000004803) #18	KATNAL2 (ENSMGAG00000004476) #21	ENSMGAG00000001384 #22	ST8SIA5 (ENSMGAG00000016483) #23	LOXHD1 (ENSMGAG00000016776) #24	RNF165 (ENSMGAG00000001405) #25	C18orf25 (ENSMGAG00000021854) #26	HAUS1 (ENSMGAG00000001559) #27	ENSMGAG00000009963 #28	PSTPIP2 (ENSMGAG00000001515) #29	EPG5 (ENSMGAG00000001532) #30	ENSMGAG00000001401 #31	ENSMGAG00000009233 #32	ENSMGAG00000009227 #32	SETBP1 (ENSMGAG00000009445) #34	SYT4 (ENSMGAG00000001587)	PIK3C3 (ENSMGAG00000009060)	ENSMGAG00000022981
Turkey	MODERN SPECIES	323																ENSMGAG00000018281 #22
Chicken	MODERN SPECIES	131	CPLX4 (ENSGALG00010010415)	LMAN1L (ENSGALG00010010445)	ACAA2 (ENSGALG00010010463)	LIPG (ENSGALG00010009013)	RPL17 (ENSGALG00010011192)	ENSGALG00010011203	DYM (ENSGALG00010010922)	SMAD7 (ENSGALG00010009910)	CTIF (ENSGALG00010010007)	ZBTB7C (ENSGALG00010010049)	SMAD2 (ENSGALG00010010623)	SKOR2 (ENSGALG00010011268) #16	IER3IP1 (ENSGALG00010011367) #17	HDHD2 (ENSGALG00010012845) #18	KATNAL2 (ENSGALG00010011422) #21	PIAS2 (ENSGALG00010009774) #22	ST8SIA5 (ENSGALG00010009858) #23	LOXHD1 (ENSGALG00010012046) #24	RNF165 (ENSGALG00010012051) #25	CZH18ORF25 (ENSGALG00010012067) #26	HAUS1 (ENSGALG00010012082) #27	ATP5F1AZ (ENSGALG00010012088) #28	PSTPIP2 (ENSGALG00010012108) #29	EPG5 (ENSGALG00010012119) #30	ENSGALG00010012126 #31	ENSGALG00010012131 #32	ENSGALG00010012134 #32	SETBP1 (ENSGALG00010012148) #34	SYT4 (ENSGALG00010012160)	RIT2 (ENSGALG00010012204)	PIK3C3 (ENSGALG00010009548)
African ostrich	MODERN SPECIES	306	ENSSCUG00000001539	MYO5B (ENSSCUG00000001541)	ACAA2 (ENSSCUG00000001545)	LIPG (ENSSCUG00000001552)	ENSSCUG00000001555	C18orf32 (ENSSCUG00000001562)	DYM (ENSSCUG00000001566)	ENSSCUG00000001573	SMAD7 (ENSSCUG00000001575)	CTIF (ENSSCUG00000001577)	ZBTB7C (ENSSCUG00000001580)	SMAD2 (ENSSCUG00000001582)	IER3IP1 (ENSSCUG00000001587) #17	HDHD2 (ENSSCUG00000001588) #18	KATNAL2 (ENSSCUG00000001589) #21	PIAS2 (ENSSCUG00000001592) #22	ENSSCUG00000001625	ST8SIA5 (ENSSCUG00000001666) #23	LOXHD1 (ENSSCUG00000001676) #24	RNF165 (ENSSCUG00000001684) #25	C18orf25 (ENSSCUG00000001690) #26	HAUS1 (ENSSCUG00000001700) #27	ATP5F1A (ENSSCUG00000001706) #28	PSTPIP2 (ENSSCUG00000001712) #29	EPG5 (ENSSCUG00000001722) #30	ENSSCUG00000001740 #31	ENSSCUG00000001742 #32	SETBP1 (ENSSCUG00000001747) #34	SYT4 (ENSSCUG00000001753)	RIT2 (ENSSCUG00000001756)	PIK3C3 (ENSSCUG00000001759)
Australian saltwater crocodile	MODERN SPECIES	29	ENSCPRG00005014216	ENSCPRG00005014610	ENSCPRG00005014614	ACAA2 (ENSCPRG00005014619)	LIPG (ENSCPRG00005014622)	ENSCPRG00005014628	C18orf32 (ENSCPRG00005014637)	DYM (ENSCPRG00005014651)	SMAD7 (ENSCPRG00005014735)	CTIF (ENSCPRG00005014748)	ZBTB7C (ENSCPRG00005014760)	SMAD2 (ENSCPRG00005014766)	IER3IP1 (ENSCPRG00005014776) #17	HDHD2 (ENSCPRG00005014780) #18	KATNAL2 (ENSCPRG00005014784) #21	PIAS2 (ENSCPRG00005014791) #22	ENSCPRG00005014797	ENSCPRG00005014800	ST8SIA5 (ENSCPRG00005014802) #23	LOXHD1 (ENSCPRG00005014818) #24	RNF165 (ENSCPRG00005014878) #25	C18orf25 (ENSCPRG00005014887) #26	HAUS1 (ENSCPRG00005014890) #27	ATP5F1A (ENSCPRG00005014898) #28	PSTPIP2 (ENSCPRG00005014911) #29	EPG5 (ENSCPRG00005014928) #30	ENSCPRG00005014943 #31	ENSCPRG00005014958 #32	ENSCPRG00005014964 #32	ENSCPRG00005014968	SETBP1 (ENSCPRG00005014980) #34
Lepidosauria	ANCESTRAL SPECIES	1	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000178986	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E #31	ENSGT00390000018729.a.d #32	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943	ENSGT00940000158673
Episquamata	ANCESTRAL SPECIES	6	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000154779.a.a	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E #31	ENSGT00390000018729.a.d #32	ENSGT00940000158784 #34	ENSGT00940000159026
Laterata	ANCESTRAL SPECIES	8	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E #31	ENSGT00390000018729.a.d #32	ENSGT00940000158784 #34	ENSGT00940000159026	ENSGT00940000161402	ENSGT00940000156943	ENSGT00940000154201.a.a.a.b
Common wall lizard	MODERN SPECIES	2	ENSPMRG00000010121	MYO5B (ENSPMRG00000009756)	ACAA2 (ENSPMRG00000009605)	LIPG (ENSPMRG00000009592)	ENSPMRG00000009575	C18orf32 (ENSPMRG00000009571)	DYM (ENSPMRG00000009531)	SMAD7 (ENSPMRG00000009512)	CTIF (ENSPMRG00000009496)	ZBTB7C (ENSPMRG00000009478)	ENSPMRG00000009469	SMAD2 (ENSPMRG00000009455)	SKOR2 (ENSPMRG00000009448) #16	HDHD2 (ENSPMRG00000009442) #18	KATNAL2 (ENSPMRG00000015210) #21	PIAS2 (ENSPMRG00000015190) #22	ENSPMRG00000015174	ST8SIA5 (ENSPMRG00000015167) #23	LOXHD1 (ENSPMRG00000015049) #24	RNF165 (ENSPMRG00000015013) #25	ENSPMRG00000015011	C18orf25 (ENSPMRG00000015004) #26	ENSPMRG00000015002	ATP5F1A (ENSPMRG00000014993) #28	PSTPIP2 (ENSPMRG00000014981) #29	EPG5 (ENSPMRG00000014633) #30	ENSPMRG00000014575 #31	ENSPMRG00000014565 #32	SETBP1 (ENSPMRG00000014561) #34	ENSPMRG00000014558	ENSPMRG00000014556
Argentine black and white tegu	MODERN SPECIES	34	MYO5B (ENSSMRG00000016569)	ACAA2 (ENSSMRG00000016578)	LIPG (ENSSMRG00000016580)	RPL17 (ENSSMRG00000016581)	C18orf32 (ENSSMRG00000016584)	DYM (ENSSMRG00000016587)	SMAD7 (ENSSMRG00000016590)	CTIF (ENSSMRG00000016591)	ENSSMRG00000016592	ZBTB7C (ENSSMRG00000016594)	SMAD2 (ENSSMRG00000016595)	SKOR2 (ENSSMRG00000000124) #16	IER3IP1 (ENSSMRG00000000137) #17	HDHD2 (ENSSMRG00000000191) #18	KATNAL2 (ENSSMRG00000000219) #21	PIAS2 (ENSSMRG00000000256) #22	ENSSMRG00000000298	ST8SIA5 (ENSSMRG00000000377) #23	LOXHD1 (ENSSMRG00000000443) #24	RNF165 (ENSSMRG00000000637) #25	C18orf25 (ENSSMRG00000000659) #26	HAUS1 (ENSSMRG00000000673) #27	ATP5F1A (ENSSMRG00000000705) #28	PSTPIP2 (ENSSMRG00000000716) #29	EPG5 (ENSSMRG00000000761) #30	ENSSMRG00000000808 #31	ENSSMRG00000000842 #32	SETBP1 (ENSSMRG00000000927) #34	ENSSMRG00000000984	SYT4 (ENSSMRG00000000987)	RIT2 (ENSSMRG00000001031)
Toxicofera	ANCESTRAL SPECIES	18	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000154779.a.a	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E #31	ENSGT00390000018729.a.d #32	ENSGT00940000158784 #34	ENSGT00940000159026
Elapidae	ANCESTRAL SPECIES	19	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000154779.a.a	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30	ENSGT01080000257333.E #31	ENSGT00390000018729.a.d #32	ENSGT00940000158784 #34	ENSGT00940000159026
Indian cobra	MODERN SPECIES	1	ENSNNAG00000013638	MYO5B (ENSNNAG00000013682)	ACAA2 (ENSNNAG00000013909)	LIPG (ENSNNAG00000013974)	ENSNNAG00000014239	C18orf32 (ENSNNAG00000014266)	DYM (ENSNNAG00000014278)	SMAD7 (ENSNNAG00000014299)	CTIF (ENSNNAG00000014324)	ZBTB7C (ENSNNAG00000014457)	SMAD2 (ENSNNAG00000014472)	ENSNNAG00000014533 #18	IER3IP1 (ENSNNAG00000014563) #17	ENSNNAG00000014575 #18	KATNAL2 (ENSNNAG00000014598) #21	PIAS2 (ENSNNAG00000014631) #22	ENSNNAG00000014747	ST8SIA5 (ENSNNAG00000014880) #23	LOXHD1 (ENSNNAG00000014987) #24	RNF165 (ENSNNAG00000015582) #25	ENSNNAG00000015609	C18orf25 (ENSNNAG00000015617) #26	ENSNNAG00000015653	ATP5F1A (ENSNNAG00000015663) #28	PSTPIP2 (ENSNNAG00000015692) #29	ENSNNAG00000015772 #32	SYT4 (ENSNNAG00000015811)	ENSNNAG00000015828	PIK3C3 (ENSNNAG00000015843)	ENSNNAG00000015877	ENSNNAG00000015888
Elapidae_a	ANCESTRAL SPECIES	24	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22
Blue-lipped sea krait	MODERN SPECIES	2997																PIAS2 (ENSLLTG00000008779) #22
Acanthophiinae	ANCESTRAL SPECIES	24	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22
Mainland tiger snake	MODERN SPECIES	366												SKOR2 (ENSNSUG00000010155) #16	IER3IP1 (ENSNSUG00000010156) #17	ENSNSUG00000010157	KATNAL2 (ENSNSUG00000010158) #21	PIAS2 (ENSNSUG00000010159) #22	ENSNSUG00000010162
Eastern brown snake	MODERN SPECIES	2	ENSPTXG00000017817	MYO5B (ENSPTXG00000006873)	ACAA2 (ENSPTXG00000006871)	LIPG (ENSPTXG00000006699)	ENSPTXG00000006694	C18orf32 (ENSPTXG00000006692)	DYM (ENSPTXG00000006583)	SMAD7 (ENSPTXG00000006582)	CTIF (ENSPTXG00000006581)	ZBTB7C (ENSPTXG00000006580)	SMAD2 (ENSPTXG00000006579)	SKOR2 (ENSPTXG00000006578) #16	IER3IP1 (ENSPTXG00000006577) #17	HDHD2 (ENSPTXG00000006576) #18	KATNAL2 (ENSPTXG00000006575) #21	PIAS2 (ENSPTXG00000006574) #22	ENSPTXG00000006543
Lizard	MODERN SPECIES		ENSACAG00000038205	ENSACAG00000035791	ENSACAG00000036056	RYR3 (ENSACAG00000015401)	ENSACAG00000034962	AVEN (ENSACAG00000015390)	CHRM5 (ENSACAG00000015381)	ENSACAG00000015369	EMC7 (ENSACAG00000015350)	KATNBL1 (ENSACAG00000015339)	ENSACAG00000028574	SKOR2 (ENSACAG00000006146) #16	ENSACAG00000036900	HDHD2 (ENSACAG00000044652) #18	KATNAL2 (ENSACAG00000012057) #21	PIAS2 (ENSACAG00000012084) #22	ENSACAG00000012275	ST8SIA5 (ENSACAG00000012397) #23	ENSACAG00000038362	LOXHD1 (ENSACAG00000012527) #24	RNF165 (ENSACAG00000012611) #25	ENSACAG00000040406	C18orf25 (ENSACAG00000012627) #26	HAUS1 (ENSACAG00000012652) #27	ATP5F1A (ENSACAG00000012698) #28	PSTPIP2 (ENSACAG00000012789) #29	ENSACAG00000044541	EPG5 (ENSACAG00000012846) #30	ENSACAG00000040459	ENSACAG00000012950 #31	ENSACAG00000012956 #32
tuatara	MODERN SPECIES	631									SMAD7 (ENSSPUG00000015295)	CTIF (ENSSPUG00000014734)	ENSSPUG00000014650	ZBTB7C (ENSSPUG00000014644)	ENSSPUG00000014624	HDHD2 (ENSSPUG00000014604) #18	KATNAL2 (ENSSPUG00000014578) #21	PIAS2 (ENSSPUG00000014552) #22	ENSSPUG00000014537
Anura	ANCESTRAL SPECIES	158		ENSGT00940000155402.a.b	ENSGT01030000234626.D	ENSGT00940000159394	ENSGT00950000183010.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474 #16	ENSGT00510000047648 #17	ENSGT00940000155805 #18	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00940000161143	ENSGT00390000006029 #27	ENSGT00550000074846 #28	ENSGT00940000158788 #29	ENSGT00390000007354 #30
Frog	MODERN SPECIES		ENSXETG00000047825	ENSXETG00000047713	tor4a (ENSXETG00000020322)	ctif (ENSXETG00000026836)	smad7 (ENSXETG00000020317)	dym (ENSXETG00000020310)	c18orf32 (ENSXETG00000026840)	rpl17 (ENSXETG00000020308)	zbtb7c (ENSXETG00000035017)	smad2 (ENSXETG00000020292)	ENSXETG00000045677	ENSXETG00000038874 #16	ier3ip1 (ENSXETG00000046485) #17	hdhd2 (ENSXETG00000020183) #18	katnal2 (ENSXETG00000033325) #21	pias2 (ENSXETG00000021519) #22	eef2.2 (ENSXETG00000021508)	epg5 (ENSXETG00000032699) #30	ENSXETG00000049379	PSTPIP2 (ENSXETG00000033294) #29	atp5f1a (ENSXETG00000002315) #28	haus1 (ENSXETG00000021500) #27	fdx2 (ENSXETG00000021499)	c18orf25 (ENSXETG00000021498) #26	rnf165 (ENSXETG00000036743) #25	loxhd1 (ENSXETG00000030605) #24	st8sia5 (ENSXETG00000039548) #23	ENSXETG00000031297 #31	slc14a2 (ENSXETG00000047568) #32	setbp1 (ENSXETG00000008160) #34	ENSXETG00000043071
Leishan spiny toad	MODERN SPECIES		ENSLLEG00000004377	ENSLLEG00000004373	ENSLLEG00000004369	DYM (ENSLLEG00000004334)	ENSLLEG00000004313	ENSLLEG00000004310	ENSLLEG00000004306	ENSLLEG00000004298	CTIF (ENSLLEG00000004281)	ZBTB7C (ENSLLEG00000004273)	SMAD2 (ENSLLEG00000004265)	SKOR2 (ENSLLEG00000004251) #16	IER3IP1 (ENSLLEG00000004247) #17	HDHD2 (ENSLLEG00000004239) #18	KATNAL2 (ENSLLEG00000004217) #21	PIAS2 (ENSLLEG00000004193) #22	ENSLLEG00000004182	ENSLLEG00000004153	ENSLLEG00000004148	ENSLLEG00000004145	ST8SIA5 (ENSLLEG00000004139) #23	LOXHD1 (ENSLLEG00000004123) #24	RNF165 (ENSLLEG00000004111) #25	C18orf25 (ENSLLEG00000004107) #26	FDX2 (ENSLLEG00000004099)	HAUS1 (ENSLLEG00000004094) #27	ENSLLEG00000004037 #28	ENSLLEG00000004000	ENSLLEG00000003997	ENSLLEG00000003993	ENSLLEG00000003987
Coelacanth	MODERN SPECIES	1974													STOML2 (ENSLACG00000009849)	ENSLACG00000009668	ENSLACG00000009071	PIAS2 (ENSLACG00000006457) #22	ENSLACG00000004710	ENSLACG00000003830
Actinopterygii	ANCESTRAL SPECIES	139				ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905	ENSGT00940000155402.a.a	ENSGT00940000154929.B	ENSGT00940000161213	ENSGT00940000159179	ENSGT00940000160028	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000154662.d	ENSGT00940000159261	ENSGT01030000234534.B.a.a.a.a	ENSGT00940000160088	ENSGT00940000159237	ENSGT00990000205656	ENSGT00940000160050	ENSGT00530000063615.a	ENSGT00940000159004	ENSGT00940000159440	ENSGT00530000063841.b	ENSGT00940000160191	ENSGT00940000154737.c	ENSGT00440000034888	ENSGT00940000157273
Reedfish	MODERN SPECIES	15	ENSECRG00000007356	pax5 (ENSECRG00000007323)	zcchc7 (ENSECRG00000007299)	grhprb (ENSECRG00000007286)	grhpra (ENSECRG00000007277)	ZBTB5 (ENSECRG00000007270)	slc25a51a (ENSECRG00000007262)	ENSECRG00000007254	POLR1E (ENSECRG00000007241)	tomm5 (ENSECRG00000007232)	ENSECRG00000007198	ENSECRG00000007179	ENSECRG00000007112	ENSECRG00000007067	arid3c (ENSECRG00000007058)	pias2 (ENSECRG00000007036) #22	pip5k1ab (ENSECRG00000007026)	ENSECRG00000007010	fancg (ENSECRG00000006999)	vcp (ENSECRG00000006960)	ENSECRG00000006926	dnajb5 (ENSECRG00000006915)	ENSECRG00000006908	epg5 (ENSECRG00000006890) #30	lix1 (ENSECRG00000006870)	riok2 (ENSECRG00000006857)	ENSECRG00000006851	rgmb (ENSECRG00000006844)	ENSECRG00000006836	erap2 (ENSECRG00000006823)	ENSECRG00000006772
Neopterygii	ANCESTRAL SPECIES	26	ENSGT00530000066485	ENSGT00510000047669	ENSGT00940000156303	ENSGT00940000157646	ENSGT00940000153731.a.a	ENSGT00940000154578.B	ENSGT00950000183129.b.a	ENSGT00940000157749	ENSGT00910000144505	ENSGT00390000007153.a.a.a	ENSGT00940000160263	ENSGT00940000155290.C	ENSGT00390000008802	ENSGT00440000033872	ENSGT00940000160028	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000154662.d	ENSGT00390000007195	ENSGT00900000141071.b	ENSGT00940000166020	ENSGT00940000156090.a	ENSGT00390000007354 #30	ENSGT00390000005869.b	ENSGT00940000175463	ENSGT00390000003255	ENSGT00950000183112.b.a.b	ENSGT00940000162653	ENSGT00940000157902	ENSGT00390000018729.a.e #32	ENSGT00940000158784 #34	ENSGT00940000155179
Spotted gar	MODERN SPECIES	658	fsta (ENSLOCG00000006942)	ENSLOCG00000006931	MOCS2 (ENSLOCG00000006920)	ITGA2 (ENSLOCG00000006872)	ITGA1 (ENSLOCG00000006845)	isl1a (ENSLOCG00000006816)	si:dkey-3h3.3 (ENSLOCG00000006799)	parp8 (ENSLOCG00000006783)	ENSLOCG00000006774	golph3a (ENSLOCG00000006756)	mtmr12 (ENSLOCG00000006743)	zfr (ENSLOCG00000006727)	sub1b (ENSLOCG00000006692)	npr3 (ENSLOCG00000006676)	arid3c (ENSLOCG00000006663)	pias2 (ENSLOCG00000006647) #22	ENSLOCG00000006634	fancg (ENSLOCG00000006614)	vcp (ENSLOCG00000006589)	hwa (ENSLOCG00000006577)	akr1a1a (ENSLOCG00000006557)	dnajb5 (ENSLOCG00000006541)	ENSLOCG00000006504	epg5 (ENSLOCG00000006481) #30	lix1 (ENSLOCG00000006461)	riok2 (ENSLOCG00000006432)	ENSLOCG00000006413	rgmb (ENSLOCG00000006395)	erap2 (ENSLOCG00000006368)	ERAP2 (ENSLOCG00000006336)	lnpep (ENSLOCG00000006318)
Osteoglossocephalai	ANCESTRAL SPECIES	8	ENSGT00940000161247	ENSGT00940000156244	ENSGT00390000013835	ENSGT00940000157072.b	ENSGT00940000153731.a.a	ENSGT00940000154578.B	ENSGT00950000183129.b.a	ENSGT00940000157749	ENSGT00910000144505	ENSGT00390000007153.a.a.a	ENSGT00940000160263	ENSGT00940000155290.C	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000160028	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00390000007195	ENSGT00900000141071.b	ENSGT00940000166020	ENSGT00940000156090.a	ENSGT00390000007354 #30	ENSGT00390000005869.b	ENSGT00940000175463	ENSGT00390000003255	ENSGT00950000183112.b.a.b	ENSGT01090000260661	ENSGT00940000162653	ENSGT00940000157902
Osteoglossiformes	ANCESTRAL SPECIES	83	ENSGT00940000157072.a	ENSGT00530000066485	ENSGT00510000047669	ENSGT00940000156303	ENSGT00940000157646	ENSGT00940000153731.a.a.h	ENSGT00950000183129.b.a	ENSGT00940000157749.a	ENSGT00390000007153.a.a.a.c.b	ENSGT00390000007153.a.a.a.d	ENSGT00940000160263.h	ENSGT00940000155290.C.x	ENSGT00390000008802.a.a	ENSGT00440000033872.d	ENSGT00940000160028	ENSGT01030000234539.a.a.b.b #22	ENSGT00900000141071.a.a	ENSGT01000000214630	ENSGT00940000156090.a	ENSGT00390000018729.a.e.h #32	ENSGT00940000158784.v #34	ENSGT01030000234623.a.b.a.f	ENSGT00940000155227.a	ENSGT00940000156640	ENSGT00940000156354.m	ENSGT00510000046704.b.a.e	ENSGT00390000003122.a	ENSGT00940000158176	ENSGT00940000158270	ENSGT00990000203589.b.b.d	ENSGT00940000157310.j
P. kingsleyae	MODERN SPECIES	2	ENSPKIG00000016000	MOCS2 (ENSPKIG00000016063)	ITGA2 (ENSPKIG00000016088)	ITGA1 (ENSPKIG00000016168)	ENSPKIG00000016360	ENSPKIG00000016369	isl1a (ENSPKIG00000016392)	parp8 (ENSPKIG00000016486)	ENSPKIG00000016635	ENSPKIG00000016705	mtmr12 (ENSPKIG00000016715)	ZFR (ENSPKIG00000016781)	sub1b (ENSPKIG00000016923)	npr3 (ENSPKIG00000016941)	ENSPKIG00000016979	pias2 (ENSPKIG00000017057) #22	vcp (ENSPKIG00000017173)	hwa (ENSPKIG00000017253)	ENSPKIG00000017266	dnajb5 (ENSPKIG00000017272)	ENSPKIG00000017306 #32	SETBP1 (ENSPKIG00000017335) #34	serinc5 (ENSPKIG00000017366)	thbs4b (ENSPKIG00000017424)	tent2 (ENSPKIG00000017504)	homer1b (ENSPKIG00000017568)	JMY (ENSPKIG00000017638)	bhmt (ENSPKIG00000017692)	DMGDH (ENSPKIG00000017764)	ARSB (ENSPKIG00000017800)	lhfpl2a (ENSPKIG00000017855)
Asian bonytongue	MODERN SPECIES	21	fstb (ENSSFOG00015017792)	ENSSFOG00015017776	MOCS2 (ENSSFOG00015030071)	ITGA2 (ENSSFOG00015017736)	ENSSFOG00015028008	ITGA1 (ENSSFOG00015017615)	isl1a (ENSSFOG00015017541)	parp8 (ENSSFOG00015017441)	ENSSFOG00015017401	golph3a (ENSSFOG00015024847)	mtmr12 (ENSSFOG00015017341)	ZFR (ENSSFOG00015017300)	sub1b (ENSSFOG00015031985)	npr3 (ENSSFOG00015017270)	ENSSFOG00015026815	pias2 (ENSSFOG00015017181) #22	vcp (ENSSFOG00015017111)	hwa (ENSSFOG00015025358)	dnajb5 (ENSSFOG00015017075)	SETBP1 (ENSSFOG00015017063) #34	serinc5 (ENSSFOG00015017025)	thbs4b (ENSSFOG00015016974)	tent2 (ENSSFOG00015016954)	homer1b (ENSSFOG00015016907)	JMY (ENSSFOG00015016891)	bhmt (ENSSFOG00015016840)	DMGDH (ENSSFOG00015016787)	ARSB (ENSSFOG00015016765)	lhfpl2a (ENSSFOG00015031014)	SCAMP1 (ENSSFOG00015016716)	AP3B1 (ENSSFOG00015016624)
Clupeocephala	ANCESTRAL SPECIES	169					ENSGT00940000153731.a.a	ENSGT00940000154578.B	ENSGT00950000183129.b.a	ENSGT00940000157749	ENSGT00910000144505	ENSGT00390000007153.a.a.a	ENSGT00940000160263	ENSGT00940000155290.C	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000160028	ENSGT01030000234539.a.a.b.b #22	ENSGT00390000007195	ENSGT00900000141071.b	ENSGT00940000166020	ENSGT00940000156090.a	ENSGT00390000007354 #30	ENSGT00390000005869.b	ENSGT00940000175463	ENSGT00390000003255	ENSGT00950000183112.b.a.b	ENSGT01090000260661	ENSGT00940000162653	ENSGT00940000157902	ENSGT00390000018729.a.e #32	ENSGT00940000158784 #34	ENSGT00940000155179
Otomorpha	ANCESTRAL SPECIES	33	ENSGT00940000157724.b	ENSGT00940000161247	ENSGT00940000156244.a.a	ENSGT00390000013835	ENSGT00940000157072.b	ENSGT00940000153731.a.a	ENSGT00940000154578.B	ENSGT00950000183129.b.a	ENSGT00940000157749	ENSGT00390000007153.a.a.a	ENSGT00940000160263	ENSGT00940000155290.C	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000160028	ENSGT01030000234539.a.a.b.b #22	ENSGT00390000007195	ENSGT00900000141071.b	ENSGT00940000166020	ENSGT00940000156090.a	ENSGT00390000007354 #30	ENSGT00390000005869.b	ENSGT00390000003255	ENSGT00950000183112.b.a.b	ENSGT01090000260661	ENSGT00940000162653	ENSGT00940000157902	ENSGT00390000018729.a.e #32	ENSGT00940000158784 #34	ENSGT00940000155179	ENSGT01030000234623.a.b.a
Clupeiformes	ANCESTRAL SPECIES	269															ENSGT00940000155776.b	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000154662.d	ENSGT00390000007195	ENSGT00900000141071.b	ENSGT00940000166020	ENSGT00940000156090.a	ENSGT00390000007354 #30	ENSGT00390000005869.b	ENSGT00390000003255	ENSGT00950000183112.b.a.b	ENSGT00940000162653	ENSGT00940000157902	ENSGT00390000018729.a.e #32	ENSGT00940000158784 #34	ENSGT00940000155179	ENSGT01030000234623.a.b.a
Denticle herring	MODERN SPECIES	2	COX5B (ENSDCDG00000004410)	EP400 (ENSDCDG00000004432)	ELMOD3 (ENSDCDG00000004775)	AEBP1 (ENSDCDG00000004803)	POLR3D (ENSDCDG00000004822)	mak16 (ENSDCDG00000004830)	ENSDCDG00000004833	ENSDCDG00000004842	ENSDCDG00000004853	hsd17b1 (ENSDCDG00000004867)	SLC18A1 (ENSDCDG00000004897)	RIMBP2 (ENSDCDG00000004936)	ADGRD1 (ENSDCDG00000004978)	ENSDCDG00000005244	RICTOR (ENSDCDG00000005281)	pias2 (ENSDCDG00000005411) #22	EEF2 (ENSDCDG00000007631)	fancg (ENSDCDG00000010927)	vcp (ENSDCDG00000011128)	dnajb5 (ENSDCDG00000013801)	epg5 (ENSDCDG00000014020) #30	lix1 (ENSDCDG00000016542)	riok2 (ENSDCDG00000016556)	rgmb (ENSDCDG00000016577)	erap2 (ENSDCDG00000016630)	lnpep (ENSDCDG00000016984)	slc14a2 (ENSDCDG00000017377) #32	SETBP1 (ENSDCDG00000017976) #34	cdk7 (ENSDCDG00000018040)	serinc5 (ENSDCDG00000018088)	thbs4a (ENSDCDG00000018205)
Atlantic herring	MODERN SPECIES	23	UNC5C (ENSCHAG00000008751)	bmpr1ba (ENSCHAG00000012209)	pdlim5a (ENSCHAG00000012627)	opn4xb (ENSCHAG00000012656)	EGFLAM (ENSCHAG00000012688)	GDNF (ENSCHAG00000013121)	nipbla (ENSCHAG00000013147)	slc1a3a (ENSCHAG00000013333)	lmbrd2a (ENSCHAG00000013430)	UGT3A2 (ENSCHAG00000014471)	spef2 (ENSCHAG00000014510)	lifra (ENSCHAG00000014794)	ENSCHAG00000015001	RICTOR (ENSCHAG00000015143)	ENSCHAG00000017160	pias2 (ENSCHAG00000017215) #22	EEF2 (ENSCHAG00000018904)	fancg (ENSCHAG00000019588)	vcp (ENSCHAG00000019611)	akr1a1a (ENSCHAG00000020098)	dnajb5 (ENSCHAG00000020223)	epg5 (ENSCHAG00000020254) #30	lix1 (ENSCHAG00000021068)	riok2 (ENSCHAG00000021077)	ENSCHAG00000021186	ENSCHAG00000021202	slc14a2 (ENSCHAG00000021211) #32	SETBP1 (ENSCHAG00000021253) #34	mtx3 (ENSCHAG00000021271)	thbs4a (ENSCHAG00000021328)	serinc5 (ENSCHAG00000023325)
Otophysi	ANCESTRAL SPECIES	78	ENSGT00940000157724.b	ENSGT00940000161247	ENSGT00940000156244.a.a	ENSGT00390000013835	ENSGT00940000157072.b	ENSGT00940000153731.a.a	ENSGT00940000154578.B	ENSGT00950000183129.b.a	ENSGT00940000157749	ENSGT00390000007153.a.a.a	ENSGT00940000160263	ENSGT00940000155290.C	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000160028	ENSGT01030000234539.a.a.b.b #22	ENSGT00390000007195	ENSGT00900000141071.b	ENSGT00940000166020	ENSGT00940000156090.a	ENSGT00390000007354 #30	ENSGT00940000175463	ENSGT00390000003255	ENSGT00940000156812	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000164635	ENSGT00390000003209	ENSGT00940000164527.a
Characiphysae	ANCESTRAL SPECIES	36	ENSGT00940000157724.b	ENSGT00940000161247	ENSGT00940000156244.a.a	ENSGT00390000013835	ENSGT00940000157072.b	ENSGT00940000153731.a.a	ENSGT00940000154578.B	ENSGT00950000183129.b.a	ENSGT00940000157749	ENSGT00390000007153.a.a.a	ENSGT00940000160263	ENSGT00940000155290.C	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000160028	ENSGT01030000234539.a.a.b.b #22	ENSGT00390000007195	ENSGT00900000141071.b	ENSGT00940000166020	ENSGT00940000156090.a	ENSGT00390000007354 #30	ENSGT00390000003255
Channel catfish	MODERN SPECIES	14	Snx18 (ENSIPUG00000008781)	hspb3 (ENSIPUG00000008774)	arl15 (ENSIPUG00000008726)	ndufs4 (ENSIPUG00000008708)	fsta (ENSIPUG00000008682)	isl1 (ENSIPUG00000008663)	si:dkey-3h3.3 (ENSIPUG00000008643)	parp8 (ENSIPUG00000008453)	pdzd2 (ENSIPUG00000008305)	golph3 (ENSIPUG00000008286)	mtmr12 (ENSIPUG00000008256)	zfr (ENSIPUG00000008192)	sub1 (ENSIPUG00000008166)	npr3 (ENSIPUG00000008136)	arid3a (ENSIPUG00000008074)	PIAS2 (ENSIPUG00000007997) #22	EEF2 (ENSIPUG00000007921)	fancg (ENSIPUG00000007884)	vcp (ENSIPUG00000007814)	DNAJB5 (ENSIPUG00000007791)	epg5 (ENSIPUG00000007541) #30	riok2 (ENSIPUG00000007450)	rab14 (ENSIPUG00000007415)	gsnb (ENSIPUG00000007354)	ttf1 (ENSIPUG00000007333)	ENSIPUG00000007318	camk2b1 (ENSIPUG00000007027)	si:dkey-174n20.1 (ENSIPUG00000006997)	ENSIPUG00000006932	pik3ip1 (ENSIPUG00000006910)	Limk2 (ENSIPUG00000006810)
Characiphysae_b	ANCESTRAL SPECIES	9	ENSGT00940000157724.b	ENSGT00940000161247	ENSGT00940000156244.a.a	ENSGT00390000013835	ENSGT00940000157072.b	ENSGT00940000153731.a.a	ENSGT00940000154578.B	ENSGT00950000183129.b.a	ENSGT00940000157749	ENSGT00390000007153.a.a.a	ENSGT00940000160263	ENSGT00940000155290.C	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000160028	ENSGT01030000234539.a.a.b.b #22	ENSGT00390000007195	ENSGT00900000141071.b	ENSGT00940000166020	ENSGT00940000156090.a	ENSGT00390000007354 #30	ENSGT00390000003255	ENSGT00940000156812	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000164635	ENSGT00390000003209	ENSGT00940000164527.a	ENSGT00390000001777	ENSGT00940000155101.d	ENSGT00940000156428
Electric eel	MODERN SPECIES	20	snx18a (ENSEEEG00000000186)	hspb3 (ENSEEEG00000000180)	arl15a (ENSEEEG00000000173)	ndufs4 (ENSEEEG00000000166)	fsta (ENSEEEG00000000138)	isl1a (ENSEEEG00000000110)	si:dkey-3h3.3 (ENSEEEG00000000067)	parp8 (ENSEEEG00000022873)	ENSEEEG00000022867	golph3a (ENSEEEG00000022866)	mtmr12 (ENSEEEG00000022864)	zfr (ENSEEEG00000022852)	sub1b (ENSEEEG00000022843)	npr3 (ENSEEEG00000022824)	arid3c (ENSEEEG00000022821)	pias2 (ENSEEEG00000022819) #22	EEF2 (ENSEEEG00000022407)	fancg (ENSEEEG00000022348)	vcp (ENSEEEG00000022178)	ENSEEEG00000022158	dnajb5 (ENSEEEG00000022155)	epg5 (ENSEEEG00000022104) #30	riok2 (ENSEEEG00000022089)	atxn2 (ENSEEEG00000022082)	mapkapk5 (ENSEEEG00000022058)	aldh2.2 (ENSEEEG00000021913)	ENSEEEG00000021902	tmem116 (ENSEEEG00000021901)	zgc:153044 (ENSEEEG00000021900)	MN1 (ENSEEEG00000021899)	PITPNB (ENSEEEG00000021896)
Characoidei	ANCESTRAL SPECIES	35	ENSGT00940000157724.b	ENSGT00940000161247	ENSGT00940000156244.a.a	ENSGT00390000013835	ENSGT00940000157072.b	ENSGT00940000153731.a.a	ENSGT00940000154578.B	ENSGT00950000183129.b.a	ENSGT00940000157749	ENSGT00390000007153.a.a.a	ENSGT00940000160263	ENSGT00940000155290.C	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000160028	ENSGT01030000234539.a.a.b.b #22
Red-bellied piranha	MODERN SPECIES	266			arl15a (ENSPNAG00000025599)	ndufs4 (ENSPNAG00000025577)	fsta (ENSPNAG00000025539)	isl1a (ENSPNAG00000025512)	si:dkey-3h3.3 (ENSPNAG00000005470)	parp8 (ENSPNAG00000025464)	ENSPNAG00000005150	golph3a (ENSPNAG00000003890)	mtmr12 (ENSPNAG00000004826)	zfr (ENSPNAG00000025151)	sub1b (ENSPNAG00000005998)	npr3 (ENSPNAG00000003857)	arid3c (ENSPNAG00000024948)	pias2 (ENSPNAG00000024833) #22
Mexicana tetra	MODERN SPECIES	28	snx18a (ENSAMXG00000019680)	hspb3 (ENSAMXG00000024932)	arl15a (ENSAMXG00000019670)	ndufs4 (ENSAMXG00000019660)	fsta (ENSAMXG00000031165)	isl1a (ENSAMXG00000032758)	si:dkey-3h3.3 (ENSAMXG00000036640)	parp8 (ENSAMXG00000019624)	ENSAMXG00000019594	golph3a (ENSAMXG00000018844)	mtmr12 (ENSAMXG00000034750)	zfr (ENSAMXG00000019511)	sub1b (ENSAMXG00000037104)	npr3 (ENSAMXG00000019445)	arid3c (ENSAMXG00000019435)	pias2 (ENSAMXG00000002435) #22	MN1 (ENSAMXG00000013235)	PITPNB (ENSAMXG00000030401)	ENSAMXG00000034576	TTC28 (ENSAMXG00000013238)	ENSAMXG00000040861	ENSAMXG00000041958	ENSAMXG00000039595	ENSAMXG00000035142	ENSAMXG00000037751	ostf1 (ENSAMXG00000035744)	ENSAMXG00000029122	me2 (ENSAMXG00000041378)	elac1 (ENSAMXG00000043092)	ENSAMXG00000042514	SMAD4 (ENSAMXG00000003756)
Cyprinoidei	ANCESTRAL SPECIES	115	ENSGT00940000157724.b	ENSGT00940000161247	ENSGT00940000156244.a.a	ENSGT00390000013835	ENSGT00940000157072.b	ENSGT00940000153731.a.a	ENSGT00940000154578.B	ENSGT00950000183129.b.a	ENSGT00940000157749	ENSGT00390000007153.a.a.a	ENSGT00940000160263	ENSGT00940000155290.C	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000160028	ENSGT01030000234539.a.a.b.b #22	ENSGT00390000007195	ENSGT00900000141071.b	ENSGT00940000166020	ENSGT00940000156090.a	ENSGT00390000007354 #30	ENSGT00390000003255.l	ENSGT00940000156812
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES		ENSGT00940000157724.b.c	ENSGT00940000161247.b	ENSGT00940000156244.a.a.b	ENSGT00390000013835.r	ENSGT00940000157072.b.c	ENSGT00940000153731.a.a.j	ENSGT00940000154578.B.b	ENSGT00950000183129.b.a.b	ENSGT00940000157749.c	ENSGT00390000007153.a.a.a.x	ENSGT00940000160263.i	ENSGT00940000155290.C.z	ENSGT00390000008802.a.a.a	ENSGT00440000033872.e	ENSGT00940000160028.b	ENSGT01030000234539.a.a.b.b.a #22	ENSGT00940000154662.d.t.a	ENSGT00390000007195.e	ENSGT00900000141071.b.e	ENSGT00940000166020.a	ENSGT00940000156090.a.a.a	ENSGT00390000007354.c #30	ENSGT00390000003255.l.b	ENSGT00940000175463	ENSGT00390000003255.k	ENSGT00940000156812.c	ENSGT00390000013370.e	ENSGT00390000002172.B.j	ENSGT00940000159009.h	ENSGT00940000155093.b.jb	ENSGT00390000018434.b.b
Goldfish	MODERN SPECIES	44	snx18a (ENSCARG00000042176)	hspb3 (ENSCARG00000042227)	arl15a (ENSCARG00000042233)	ndufs4 (ENSCARG00000042254)	fsta (ENSCARG00000042302)	isl1a (ENSCARG00000042344)	si:dkey-3h3.3 (ENSCARG00000042364)	parp8 (ENSCARG00000042429)	ENSCARG00000042813	golph3a (ENSCARG00000042854)	mtmr12 (ENSCARG00000042913)	zfr (ENSCARG00000043125)	sub1b (ENSCARG00000044211)	npr3 (ENSCARG00000044225)	arid3c (ENSCARG00000044397)	pias2 (ENSCARG00000044481) #22	EEF2 (ENSCARG00000044543)	fancg (ENSCARG00000044567)	vcp (ENSCARG00000044756)	akr1a1a (ENSCARG00000044833)	dnajb5 (ENSCARG00000045049)	epg5 (ENSCARG00000045133) #30	ENSCARG00000045916	ENSCARG00000045943	atxn2 (ENSCARG00000046031)	ENSCARG00000046299	bcl7a (ENSCARG00000046345)	alkbh2 (ENSCARG00000046391)	ncor1 (ENSCARG00000046748)	pigl (ENSCARG00000055483)	ubb (ENSCARG00000055534)
Cyprininae_a	ANCESTRAL SPECIES		ENSGT00940000157724.b.c	ENSGT00940000161247.b	ENSGT00940000156244.a.a.b	ENSGT00390000013835.r	ENSGT00940000157072.b.c	ENSGT00940000153731.a.a.j	ENSGT00940000154578.B.b	ENSGT00950000183129.b.a.b	ENSGT00940000157749.c	ENSGT00390000007153.a.a.a.x	ENSGT00940000160263.i	ENSGT00940000155290.C.z	ENSGT00390000008802.a.a.a	ENSGT00440000033872.e	ENSGT00940000160028.b	ENSGT01030000234539.a.a.b.b.a #22	ENSGT00940000154662.d.t.a	ENSGT00390000007195.e	ENSGT00900000141071.b.e	ENSGT00940000166020.a	ENSGT00940000156090.a.a.a	ENSGT00390000007354.c #30	ENSGT00390000003255.l.b	ENSGT00940000156812.c	ENSGT00390000013370.e	ENSGT00390000002172.B.j	ENSGT00940000159009.h	ENSGT00940000155093.b.jb	ENSGT00390000018434.a	ENSGT00390000003183.z	ENSGT00940000162439
Golden-line barbel	MODERN SPECIES	316	hspb3 (ENSSGRG00000028511)	arl15a (ENSSGRG00000028510)	ndufs4 (ENSSGRG00000028509)	fsta (ENSSGRG00000028482)	isl1a (ENSSGRG00000028480)	si:dkey-3h3.3 (ENSSGRG00000028479)	ENSSGRG00000028478	parp8 (ENSSGRG00000027482)	ENSSGRG00000027452	golph3a (ENSSGRG00000027451)	mtmr12 (ENSSGRG00000027450)	zfr (ENSSGRG00000026818)	sub1b (ENSSGRG00000026788)	npr3 (ENSSGRG00000026766)	arid3c (ENSSGRG00000026762)	pias2 (ENSSGRG00000026690) #22	EEF2 (ENSSGRG00000024971)	fancg (ENSSGRG00000024929)	vcp (ENSSGRG00000024843)	akr1a1a (ENSSGRG00000024839)	akr1a1a (ENSSGRG00000024825)	dnajb5 (ENSSGRG00000024822)	ENSSGRG00000024821	epg5 (ENSSGRG00000024727) #30
Common carp reference	MODERN SPECIES	7	arl15a (ENSCCRG00000064325)	ndufs4 (ENSCCRG00000039827)	fsta (ENSCCRG00000021985)	ENSCCRG00000034980	isl1a (ENSCCRG00000004249)	si:dkey-3h3.3 (ENSCCRG00000067437)	parp8 (ENSCCRG00000052803)	ENSCCRG00000069899	ENSCCRG00000012359	golph3a (ENSCCRG00000074413)	mtmr12 (ENSCCRG00000025942)	zfr (ENSCCRG00000024553)	sub1b (ENSCCRG00000054760)	npr3 (ENSCCRG00000034671)	arid3c (ENSCCRG00000048688)	pias2 (ENSCCRG00000048240) #22	ENSCCRG00000048702	fancg (ENSCCRG00000048214)	vcp (ENSCCRG00000071462)	akr1a1a (ENSCCRG00000056486)	dnajb5 (ENSCCRG00000080084)	epg5 (ENSCCRG00000046705) #30	riok2 (ENSCCRG00000046725)	atxn2 (ENSCCRG00000046722)	ENSCCRG00000067119	bcl7a (ENSCCRG00000057181)	alkbh2 (ENSCCRG00000080525)	ncor1 (ENSCCRG00000009141)	pigl (ENSCCRG00000007679)	ENSCCRG00000056415	UBB (ENSCCRG00000057018)
Cyprininae	ANCESTRAL SPECIES	53	ENSGT00940000157724.b.d	ENSGT00940000161247.a	ENSGT00940000156244.a.a.a	ENSGT00390000013835.q	ENSGT00940000157072.b.d	ENSGT00940000153731.a.a.i	ENSGT00940000154578.B.a	ENSGT00950000183129.b.a.a	ENSGT00940000157749.d	ENSGT00390000007153.a.a.a.w	ENSGT00940000160263.j	ENSGT00940000155290.C.y	ENSGT00390000008802.a.a.b	ENSGT00440000033872.f	ENSGT00940000160028.a	ENSGT01030000234539.a.a.b.b.b #22	ENSGT00940000154662.d.t.b	ENSGT00390000007195.f	ENSGT00900000141071.b.f	ENSGT00940000156090.a.a.b	ENSGT00390000007354.d #30	ENSGT00390000003255.l.a	ENSGT00940000156812.d	ENSGT00390000013370.f	ENSGT00940000159009.g	ENSGT00950000183155.a.b.a.b	ENSGT00940000155093.b.kb	ENSGT00390000018434.b.a	ENSGT00390000003183	ENSGT00940000157820.a.b	ENSGT01020000230351.E.d.b
Goldfish	MODERN SPECIES	23	snx18a (ENSCARG00000069246)	hspb3 (ENSCARG00000069252)	arl15a (ENSCARG00000069255)	ndufs4 (ENSCARG00000069257)	fsta (ENSCARG00000069267)	isl1a (ENSCARG00000069278)	si:dkey-3h3.3 (ENSCARG00000069281)	parp8 (ENSCARG00000069319)	ENSCARG00000069469	golph3a (ENSCARG00000069483)	mtmr12 (ENSCARG00000069490)	zfr (ENSCARG00000069515)	sub1b (ENSCARG00000069564)	npr3 (ENSCARG00000069567)	arid3c (ENSCARG00000069580)	pias2 (ENSCARG00000069598) #22	EEF2 (ENSCARG00000069726)	vcp (ENSCARG00000069761)	dnajb5 (ENSCARG00000069791)	epg5 (ENSCARG00000069795) #30	riok2 (ENSCARG00000069810)	atxn2 (ENSCARG00000069843)	ENSCARG00000069855	alkbh2 (ENSCARG00000069861)	ENSCARG00000069865	ncor1 (ENSCARG00000069908)	pigl (ENSCARG00000070004)	p2rx5 (ENSCARG00000005830)	emc6 (ENSCARG00000005957)	trpv1 (ENSCARG00000006025)	fam222ba (ENSCARG00000007023)
Cyprininae_a	ANCESTRAL SPECIES	151								ENSGT00950000183129.b.a.a	ENSGT00940000157749.d	ENSGT00390000007153.a.a.a.w	ENSGT00940000160263.j	ENSGT00940000155290.C.y	ENSGT00390000008802.a.a.b	ENSGT00440000033872.f	ENSGT00940000160028.a	ENSGT01030000234539.a.a.b.b.b #22	ENSGT00940000154662.d.t.b	ENSGT00390000007195.f	ENSGT00900000141071.b.f	ENSGT00940000156090.a.a.b	ENSGT00390000007354.d #30	ENSGT00390000003255.l.a	ENSGT00940000156812.d	ENSGT00390000013370.f	ENSGT00940000159009.g	ENSGT00950000183155.a.b.a.b	ENSGT00940000155093.b.kb	ENSGT00390000018434.b.a	ENSGT00390000003183.y	ENSGT01020000230351.E.d.b	ENSGT00390000003917.j
Golden-line barbel	MODERN SPECIES	452					si:dkey-3h3.3 (ENSSGRG00000053695)	si:dkey-3h3.3 (ENSSGRG00000053693)	parp8 (ENSSGRG00000053578)	ENSSGRG00000053559	ENSSGRG00000053557	golph3a (ENSSGRG00000053555)	mtmr12 (ENSSGRG00000053554)	zfr (ENSSGRG00000053399)	sub1b (ENSSGRG00000053396)	npr3 (ENSSGRG00000053395)	arid3c (ENSSGRG00000053391)	pias2 (ENSSGRG00000053356) #22	EEF2 (ENSSGRG00000053283)	fancg (ENSSGRG00000053263)	fancg (ENSSGRG00000053262)	vcp (ENSSGRG00000053148)	ENSSGRG00000053140	akr1a1a (ENSSGRG00000053137)	ENSSGRG00000053136	epg5 (ENSSGRG00000053064) #30	atxn2 (ENSSGRG00000052985)	ENSSGRG00000052984	bcl7a (ENSSGRG00000052982)	alkbh2 (ENSSGRG00000052981)	ENSSGRG00000052980	ncor1 (ENSSGRG00000052709)	pigl (ENSSGRG00000052685)
Common carp reference	MODERN SPECIES	15	snx18a (ENSCCRG00000060082)	hspb3 (ENSCCRG00000036152)	arl15a (ENSCCRG00000055046)	ndufs4 (ENSCCRG00000065799)	fsta (ENSCCRG00000036960)	isl1a (ENSCCRG00000025874)	si:dkey-3h3.3 (ENSCCRG00000010773)	parp8 (ENSCCRG00000079113)	ENSCCRG00000017026	golph3a (ENSCCRG00000072296)	mtmr12 (ENSCCRG00000023838)	zfr (ENSCCRG00000015687)	sub1b (ENSCCRG00000015592)	npr3 (ENSCCRG00000018998)	arid3c (ENSCCRG00000072347)	pias2 (ENSCCRG00000066280) #22	ENSCCRG00000055671	fancg (ENSCCRG00000005759)	vcp (ENSCCRG00000066539)	ENSCCRG00000077162	dnajb5 (ENSCCRG00000048206)	epg5 (ENSCCRG00000046846) #30	riok2 (ENSCCRG00000038700)	atxn2 (ENSCCRG00000038646)	ENSCCRG00000038602	alkbh2 (ENSCCRG00000064649)	ENSCCRG00000038589	ncor1 (ENSCCRG00000030840)	pigl (ENSCCRG00000007765)	ENSCCRG00000061316	p2rx5 (ENSCCRG00000007738)
Zebrafish	MODERN SPECIES	20	arl15a (ENSDARG00000076040)	hspb3 (ENSDARG00000067714)	ENSDARG00000113635	ndufs4 (ENSDARG00000052840)	fsta (ENSDARG00000052846)	isl1a (ENSDARG00000004023)	si:dkey-3h3.3 (ENSDARG00000067718)	parp8 (ENSDARG00000059789)	ENSDARG00000059801	golph3a (ENSDARG00000052851)	mtmr12 (ENSDARG00000059817)	zfr (ENSDARG00000027109)	sub1b (ENSDARG00000007720)	npr3 (ENSDARG00000035253)	arid3c (ENSDARG00000067729)	pias2 (ENSDARG00000092979) #22	EEF2 (ENSDARG00000035256)	fancg (ENSDARG00000024967)	vcp (ENSDARG00000020008)	akr1a1a (ENSDARG00000035257)	dnajb5 (ENSDARG00000052881)	epg5 (ENSDARG00000059846) #30	riok2 (ENSDARG00000035264)	atxn2 (ENSDARG00000052897)	ENSDARG00000059855	bcl7a (ENSDARG00000052907)	alkbh2 (ENSDARG00000059856)	ENSDARG00000076830	ENSDARG00000094458	ENSDARG00000092311	ncor1 (ENSDARG00000035285)
Euteleosteomorpha	ANCESTRAL SPECIES	243				ENSGT00940000157072.b.a.b	ENSGT00940000153731.a.a	ENSGT00940000154578.B	ENSGT00950000183129.b.a	ENSGT00940000157749	ENSGT00910000144505	ENSGT00390000007153.a.a.a	ENSGT00940000160263	ENSGT00940000155290.C	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000160028	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000158884	ENSGT00740000116886	ENSGT00940000156516	ENSGT00990000204357	ENSGT00940000160018	ENSGT00390000002575	ENSGT00940000153654
Protacanthopterygii	ANCESTRAL SPECIES	97	ENSGT00940000157072.b.a.a	ENSGT00940000153731.a.a.k.a	ENSGT00940000154578.B	ENSGT00940000157072.b.a.b	ENSGT00940000153731.a.a.k.b	ENSGT00950000183129.b.a	ENSGT00940000157749	ENSGT00910000144505	ENSGT00390000007153.a.a.a	ENSGT00940000160263	ENSGT00940000155290.C	ENSGT00390000008802.a.b	ENSGT00940000166509.c	ENSGT00440000033872	ENSGT00940000160028	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000154662.d.m	ENSGT00940000166264	ENSGT00940000159775	ENSGT00940000159393	ENSGT00940000156859	ENSGT00490000043385	ENSGT00940000153241.A	ENSGT01030000234519.e.a.a.a.b.f.e	ENSGT00940000153710.a	ENSGT00940000153189.A	ENSGT00940000159010	ENSGT00940000156771	ENSGT00940000156035.y.a	ENSGT00940000158529	ENSGT00940000156290.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	665						ENSGT00940000157072.b.a.b	ENSGT00940000153731.a.a.k.b	ENSGT00950000183129.b.a	ENSGT00940000157749.w.b	ENSGT00390000007153.a.a.a	ENSGT00940000160263	ENSGT00940000155290.C.fb.b.a.b	ENSGT00940000155290.C.fb.a	ENSGT00440000033872	ENSGT00940000160028.c	ENSGT01030000234539.a.a.b.b.c #22	ENSGT00940000154662.d.m	ENSGT00940000159775.j
Salmoninae_a	ANCESTRAL SPECIES	50	ENSGT00940000164201.c.b.a.a	ENSGT00940000155680.d.`b.a	ENSGT00500000045469	ENSGT00940000154091.a.a.s.a.d	ENSGT00940000157724.b.b.a	ENSGT00940000156244.a.a	ENSGT00390000013835	ENSGT00940000157072.b.a.a.a.b	ENSGT00940000153731.a.a.k.a	ENSGT00940000154578.B	ENSGT00950000183129.b.a.d	ENSGT00940000157749.w.b	ENSGT00910000144505.a	ENSGT00440000033872.t.a	ENSGT00940000160028.c	ENSGT01030000234539.a.a.b.b.c #22	ENSGT00940000154662.d.m	ENSGT00940000159775.j	ENSGT00940000156859.dc	ENSGT00490000043385.qc	ENSGT00940000153241.A	ENSGT00940000153189.A	ENSGT00940000159010.e.a	ENSGT00940000156771.j	ENSGT00940000156035.y.a	ENSGT00940000158529.a	ENSGT00940000156035.z	ENSGT00940000165677	ENSGT00940000155949	ENSGT00420000029943	ENSGT00940000157861
Salmo	ANCESTRAL SPECIES	19	ENSGT00500000045469	ENSGT00940000154091.a.a.s.a.d	ENSGT00940000157724.b.b.a	ENSGT00940000156244.a.a	ENSGT00390000013835	ENSGT00940000157072.b.a.a.a.b	ENSGT00940000153731.a.a.k.a	ENSGT00940000154578.B	ENSGT00950000183129.b.a.d	ENSGT00940000157749.w.b	ENSGT00390000007153.a.a.a	ENSGT00940000160263	ENSGT00940000155290.C.fb.b.a.b	ENSGT00440000033872.t.a	ENSGT00940000160028.c	ENSGT01030000234539.a.a.b.b.c #22	ENSGT00940000154662.d.m	ENSGT00940000159775.j	ENSGT00940000156859.dc	ENSGT00490000043385.qc	ENSGT00940000153241.A	ENSGT00940000153189.A	ENSGT00940000159010.e.a	ENSGT00940000156771.j	ENSGT00940000156035.y.a	ENSGT00940000165677	ENSGT00940000155949.i	ENSGT00420000029943	ENSGT00940000157861	ENSGT00390000001195.a.a	ENSGT01020000231785.a
Atlantic salmon	MODERN SPECIES	6	ENSSSAG00000088226	isl1a (ENSSSAG00000040454)	si:dkey-3h3.3 (ENSSSAG00000042525)	parp8 (ENSSSAG00000040562)	ENSSSAG00000106536	ENSSSAG00000040497	ENSSSAG00000114987	golph3a (ENSSSAG00000042992)	zfr (ENSSSAG00000042542)	ENSSSAG00000042980	npr3 (ENSSSAG00000097170)	ENSSSAG00000112210	ENSSSAG00000121882	ENSSSAG00000043118	ENSSSAG00000108845	pias2 (ENSSSAG00000045074) #22	ENSSSAG00000045387	ENSSSAG00000045063	ENSSSAG00000109028	ENSSSAG00000044999	ENSSSAG00000044988	ENSSSAG00000103704	psat1 (ENSSSAG00000044965)	ppil2 (ENSSSAG00000044893)	ENSSSAG00000111503	ENSSSAG00000094263	ENSSSAG00000088976	ENSSSAG00000084314	mapk1 (ENSSSAG00000043206)	ENSSSAG00000043329	ENSSSAG00000043598
River trout	MODERN SPECIES	39	snx18a (ENSSTUG00000010463)	arl15a (ENSSTUG00000001092)	ENSSTUG00000001096	ndufs4 (ENSSTUG00000001097)	fsta (ENSSTUG00000001106)	isl1a (ENSSTUG00000001151)	si:dkey-3h3.3 (ENSSTUG00000001158)	parp8 (ENSSTUG00000001272)	ENSSTUG00000002497	golph3a (ENSSTUG00000002511)	zfr (ENSSTUG00000002552)	ENSSTUG00000003092	ENSSTUG00000003102	npr3 (ENSSTUG00000003112)	arid3c (ENSSTUG00000003139)	pias2 (ENSSTUG00000003169) #22	ENSSTUG00000003203	EEF2 (ENSSTUG00000003231)	bmp3 (ENSSTUG00000004276)	ENSSTUG00000004344	isca1 (ENSSTUG00000006103)	ENSSTUG00000006111	psat1 (ENSSTUG00000006121)	ppil2 (ENSSTUG00000006198)	ENSSTUG00000007808	ENSSTUG00000007817	ENSSTUG00000007822	ENSSTUG00000007864	ENSSTUG00000007880	rufy3 (ENSSTUG00000007899)	ENSSTUG00000008502
Oncorhynchus	ANCESTRAL SPECIES	12	ENSGT00940000157724.b.b.a	ENSGT00940000156244.a.a	ENSGT00390000013835	ENSGT00940000157072.b.a.a.a.b	ENSGT01070000254526.a	ENSGT00940000153731.a.a.k.a	ENSGT00940000154578.B	ENSGT00950000183129.b.a.d	ENSGT00940000157749.w.b	ENSGT00910000144505.a	ENSGT00390000007153.a.a.a.o.b	ENSGT00940000155290.C.fb.b.b	ENSGT00390000008802.a.b	ENSGT00440000033872.t.a	ENSGT00940000160028.c	ENSGT01030000234539.a.a.b.b.c #22	ENSGT00940000154662.d.m	ENSGT00940000159775.j	ENSGT00940000156859.dc.b	ENSGT00490000043385.qc	ENSGT00940000153241.A	ENSGT00940000153189.A	ENSGT00940000156035.z	ENSGT00940000165677	ENSGT00940000155949.k	ENSGT00420000029943	ENSGT00940000157861	ENSGT00390000001195.a.a	ENSGT00940000153424.a.b	ENSGT00390000015513.a.b.a	ENSGT00940000154886.b.a.a
Rainbow trout	MODERN SPECIES	2	parp8 (ENSOMYG00000033894)	ENSOMYG00000059275	ENSOMYG00000033870	ENSOMYG00000054927	ENSOMYG00000059176	golph3a (ENSOMYG00000027717)	ENSOMYG00000061373	ENSOMYG00000057733	zfr (ENSOMYG00000034081)	ENSOMYG00000055951	ENSOMYG00000033918	npr3 (ENSOMYG00000035643)	ENSOMYG00000075869	ENSOMYG00000075728	ENSOMYG00000074534	pias2 (ENSOMYG00000003682) #22	ENSOMYG00000003725	ENSOMYG00000003560	ENSOMYG00000003514	ENSOMYG00000057736	ENSOMYG00000003457	psat1 (ENSOMYG00000003398)	ENSOMYG00000065873	ENSOMYG00000062187	ENSOMYG00000074484	ENSOMYG00000061699	ENSOMYG00000039494	ENSOMYG00000003286	ENSOMYG00000003261	ENSOMYG00000003238	ENSOMYG00000003186
Oncorhynchus_a	ANCESTRAL SPECIES	72	ENSGT00940000154091.a.a.s.a.d	ENSGT00940000157724.b.b.a	ENSGT00940000156244.a.a	ENSGT00390000013835	ENSGT00940000157072.b.a.a.a.b	ENSGT00940000153731.a.a.k.a	ENSGT00940000154578.B	ENSGT00950000183129.b.a.d	ENSGT00940000157749.w.b	ENSGT00910000144505.a	ENSGT00390000007153.a.a.a.o.b	ENSGT00940000155290.C.fb.b.b	ENSGT00390000008802.a.b	ENSGT00440000033872.t.a	ENSGT00940000160028.c	ENSGT01030000234539.a.a.b.b.c #22	ENSGT00940000154662.d.m	ENSGT00940000159775.j	ENSGT00940000156859.dc.b	ENSGT00490000043385.qc	ENSGT00940000153241.A	ENSGT00940000153189.A	ENSGT00940000156035.z	ENSGT00940000165677	ENSGT00940000155949.k	ENSGT00420000029943	ENSGT00940000157861	ENSGT00390000001195.a.a	ENSGT00940000153424.a.b	ENSGT00390000015513.a.b.a	ENSGT00940000154886.b.a.a
Coho salmon	MODERN SPECIES	28	ENSOKIG00005031235	si:dkey-3h3.3 (ENSOKIG00005031222)	ENSOKIG00005031216	parp8 (ENSOKIG00005030593)	ENSOKIG00005030459	ENSOKIG00005030440	ENSOKIG00005014698	ENSOKIG00005014687	golph3a (ENSOKIG00005014672)	zfr (ENSOKIG00005014315)	SUB1 (ENSOKIG00005014285)	ENSOKIG00005014265	npr3 (ENSOKIG00005014251)	ENSOKIG00005014242	arid3c (ENSOKIG00005014231)	pias2 (ENSOKIG00005014159) #22	EEF2 (ENSOKIG00005013988)	ENSOKIG00005013956	ENSOKIG00005013954	BMP3 (ENSOKIG00005013950)	TUT7 (ENSOKIG00005012525)	ISCA1 (ENSOKIG00005012439)	psat1 (ENSOKIG00005012421)	ppil2 (ENSOKIG00005012413)	ENSOKIG00005012408	ENSOKIG00005012402	ENSOKIG00005012354	ENSOKIG00005012338	rufy3 (ENSOKIG00005011897)	ENSOKIG00005011830	ENSOKIG00005011814
Chinook salmon	MODERN SPECIES	776													SLC6A19 (ENSOTSG00005017499)	ENSOTSG00005017484	ENSOTSG00005017477	pias2 (ENSOTSG00005017454) #22	EEF2 (ENSOTSG00005017450)
Salmoninae	ANCESTRAL SPECIES	2218															ENSGT00940000160028.d	ENSGT01030000234539.a.a.b.b.d #22
Huchen	MODERN SPECIES	6213																ENSHHUG00000019130 #22
Salmoninae_a	ANCESTRAL SPECIES	476														ENSGT00440000033872.s	ENSGT00940000160028.d	ENSGT01030000234539.a.a.b.b.d #22
Salmo	ANCESTRAL SPECIES	229					ENSGT00940000156290.a	ENSGT00940000156282.a.a.f	ENSGT00940000160420.g	ENSGT00940000156489	ENSGT00390000015513.a.a.b	ENSGT00940000154969.b.b	ENSGT00940000156035.y.b.a	ENSGT00940000156771.i	ENSGT00940000159010.e.b	ENSGT00940000153710.a	ENSGT01030000234519.e.a.a.a.b.f.e	ENSGT01030000234539.a.a.b.b.d #22
River trout	MODERN SPECIES	19		dmrt1 (ENSSTUG00000014046)	FBP2 (ENSSTUG00000014023)	tars1 (ENSSTUG00000013369)	ENSSTUG00000013265	ENSSTUG00000013259	rufy3 (ENSSTUG00000013218)	mapk1 (ENSSTUG00000013149)	ENSSTUG00000013132	stambpb (ENSSTUG00000013100)	ENSSTUG00000013095	ENSSTUG00000013082	ENSSTUG00000011956	ENSSTUG00000011853	ENSSTUG00000011850	pias2 (ENSSTUG00000011825) #22	mtmr12 (ENSSTUG00000011781)	ENSSTUG00000011761	ENSSTUG00000011707	mtmr12 (ENSSTUG00000011694)	zfr (ENSSTUG00000010030)	ENSSTUG00000009940	npr3 (ENSSTUG00000009840)	arid3c (ENSSTUG00000009790)	isca1 (ENSSTUG00000009778)	ENSSTUG00000009746	bmp3 (ENSSTUG00000009732)	cfap299 (ENSSTUG00000009726)	golph3a (ENSSTUG00000009711)	ENSSTUG00000009708	ENSSTUG00000009698
Atlantic salmon	MODERN SPECIES	16	dmrt3a (ENSSSAG00000111724)	dmrt1 (ENSSSAG00000087484)	ENSSSAG00000087799	fbp2 (ENSSSAG00000063352)	ENSSSAG00000063393	ENSSSAG00000115084	ENSSSAG00000104793	ENSSSAG00000110445	ENSSSAG00000063288	ENSSSAG00000099967	ENSSSAG00000083315	ENSSSAG00000121874	ENSSSAG00000064811	ENSSSAG00000063273	ENSSSAG00000107782	ENSSSAG00000063251 #22	ENSSSAG00000063261	ENSSSAG00000094406	ENSSSAG00000063191	ENSSSAG00000119443	npr3 (ENSSSAG00000083188)	ENSSSAG00000054500	ENSSSAG00000101075	zfr (ENSSSAG00000057996)	mtmr12 (ENSSSAG00000063174)	golph3a (ENSSSAG00000088620)	ENSSSAG00000103447	ENSSSAG00000102097	ENSSSAG00000087576	ENSSSAG00000111260	parp8 (ENSSSAG00000054252)
Oncorhynchus	ANCESTRAL SPECIES	77	ENSGT00940000155816.b.g.a	ENSGT00940000158223.i	ENSGT00940000154091.a.a.s.a.c	ENSGT00940000157724.b.b.b	ENSGT00940000161247	ENSGT00940000157072.b.a.b	ENSGT00940000153731.a.a.k.b	ENSGT00950000183129.b.a.c	ENSGT00940000157749.w.a	ENSGT00390000007153.a.a.a.o.a	ENSGT00940000160263	ENSGT00940000155290.C.fb.a	ENSGT00440000033872.t.b	ENSGT00440000033872.s	ENSGT00940000160028.d	ENSGT01030000234539.a.a.b.b.d #22	ENSGT00940000166264	ENSGT00390000016547	ENSGT00940000159775.i
Rainbow trout	MODERN SPECIES	27	ENSOMYG00000072286	isl1a (ENSOMYG00000031729)	parp8 (ENSOMYG00000031804)	ENSOMYG00000065284	ENSOMYG00000069321	ENSOMYG00000062061	golph3a (ENSOMYG00000064681)	ENSOMYG00000062956	mtmr12 (ENSOMYG00000031873)	zfr (ENSOMYG00000031900)	ENSOMYG00000056123	npr3 (ENSOMYG00000031590)	ENSOMYG00000068176	ENSOMYG00000072757	ENSOMYG00000031544	ENSOMYG00000031492 #22	ENSOMYG00000003743	ENSOMYG00000075752	ENSOMYG00000032688	dmrt1 (ENSOMYG00000030875)	dmrt3a (ENSOMYG00000054257)	dmrt2a (ENSOMYG00000030848)	ENSOMYG00000077300	slc4a4a (ENSOMYG00000029314)	ENSOMYG00000074912	ENSOMYG00000031416	ENSOMYG00000030988	ENSOMYG00000031461	ENSOMYG00000066635	ENSOMYG00000050942	ENSOMYG00000057560
Oncorhynchus_a	ANCESTRAL SPECIES	983																ENSGT01030000234539.a.a.b.b.d #22	ENSGT00940000166264
Chinook salmon	MODERN SPECIES	28	KCMF1 (ENSOTSG00005008002)	ENSOTSG00005008000	ENSOTSG00005007999	rasgef1ba (ENSOTSG00005007998)	ENSOTSG00005007997	ENSOTSG00005007995	ENSOTSG00005007993	mrpl1 (ENSOTSG00005007992)	golph3a (ENSOTSG00005007989)	ENSOTSG00005007988	mtmr12 (ENSOTSG00005007987)	zfr (ENSOTSG00005007986)	ENSOTSG00005007985	arid3c (ENSOTSG00005007974)	ENSOTSG00005007973	pias2 (ENSOTSG00005007972) #22	ENSOTSG00005007971	fbp2 (ENSOTSG00005007970)	dmrt1 (ENSOTSG00005007969)	dmrt3a (ENSOTSG00005007968)	dmrt2a (ENSOTSG00005007967)	slc4a4a (ENSOTSG00005004430)
Northern pike	MODERN SPECIES	12	ENSELUG00000032932	gpx8 (ENSELUG00000013928)	CDC20B (ENSELUG00000025013)	MCIDAS (ENSELUG00000013917)	CCNO (ENSELUG00000013902)	bmp2k (ENSELUG00000013888)	paqr3a (ENSELUG00000013818)	antxr2a (ENSELUG00000013774)	prdm8b (ENSELUG00000013680)	fgf5 (ENSELUG00000013670)	anxa3 (ENSELUG00000013648)	ENSELUG00000025556	mrpl1 (ENSELUG00000013391)	cnot6l (ENSELUG00000013353)	ENSELUG00000001269	pias2 (ENSELUG00000013232) #22	EEF2 (ENSELUG00000013203)	ENSELUG00000013150	cfap299 (ENSELUG00000013164)	bmp3 (ENSELUG00000013133)	prkg2 (ENSELUG00000013125)	ENSELUG00000013049	isca1 (ENSELUG00000012889)	ENSELUG00000012840	psat1 (ENSELUG00000012823)	ENSELUG00000012798	stambpb (ENSELUG00000012739)	ppil2 (ENSELUG00000012512)	ENSELUG00000011879	ENSELUG00000031321	mapk1 (ENSELUG00000011849)
Acanthomorphata	ANCESTRAL SPECIES	276						ENSGT00940000155290.C	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000158884	ENSGT00740000116886	ENSGT00940000156516	ENSGT00990000204357	ENSGT00940000160018	ENSGT00390000002575	ENSGT00940000153654	ENSGT01030000234539.a.a.b.b #22
Cod	MODERN SPECIES	2	ENSGMOG00000012960	ENSGMOG00000030226	ENSGMOG00000000942	ENSGMOG00000009638	ENSGMOG00000015201	ENSGMOG00000001832	ENSGMOG00000002015	ENSGMOG00000019480	ppm1f (ENSGMOG00000023154)	ENSGMOG00000016220	ENSGMOG00000035980	sdf2l1 (ENSGMOG00000001950)	ydjc (ENSGMOG00000016209)	ENSGMOG00000016194	ENSGMOG00000031696	ENSGMOG00000030007 #22	ENSGMOG00000023470	ENSGMOG00000011659	ENSGMOG00000013285	ENSGMOG00000003967	ENSGMOG00000020038	ENSGMOG00000025179	ENSGMOG00000017460	ENSGMOG00000030514	ENSGMOG00000036642	ENSGMOG00000027961	ENSGMOG00000023947	ENSGMOG00000017565	ENSGMOG00000017850	ENSGMOG00000035445	ENSGMOG00000029335
Euacanthomorphacea	ANCESTRAL SPECIES	133					ENSGT00940000155290.C	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00950000183129.b.a	ENSGT00940000154578.B	ENSGT00940000153731.a.a	ENSGT00940000166823	ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654	ENSGT01030000234539.a.a.b.b #22
Pinecone sodierfish	MODERN SPECIES	23	golph3a (ENSMMDG00005010152)	sub1b (ENSMMDG00005010153)	npr3 (ENSMMDG00005010154)	ENSMMDG00005010159	ENSMMDG00005010162	zfr (ENSMMDG00005010185)	ENSMMDG00005010406	parp8 (ENSMMDG00005010420)	si:dkey-3h3.3 (ENSMMDG00005010551)	isl1a (ENSMMDG00005010552)	ENSMMDG00005010554	rad17 (ENSMMDG00005010556)	zgc:86811 (ENSMMDG00005010564)	ydjc (ENSMMDG00005010572)	ube2l3b (ENSMMDG00005010575)	pias2 (ENSMMDG00005010598) #22	EEF2 (ENSMMDG00005010610)	arid3c (ENSMMDG00005010770)	ENSMMDG00005010774	dctd (ENSMMDG00005010781)	dctd (ENSMMDG00005010849)	dctd (ENSMMDG00005010850)	dctd (ENSMMDG00005010853)	dctd (ENSMMDG00005010857)	entpd2a.1 (ENSMMDG00005010860)	nelfb (ENSMMDG00005010864)	ENSMMDG00005010871	arrdc1a (ENSMMDG00005004160)	ehmt1a (ENSMMDG00005004202)	cacna1ba (ENSMMDG00005004588)	man1b1b (ENSMMDG00005004610)
Percomorphaceae	ANCESTRAL SPECIES	73						ENSGT00940000155290.C	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000154578.B	ENSGT00940000153731.a.a	ENSGT00940000166823	ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000160028	ENSGT00940000156117.e.a	ENSGT00390000017892	ENSGT00940000156820.a.a.f	ENSGT00530000063335.B.a.b	ENSGT00940000158634.a.d	ENSGT00390000005811	ENSGT00940000155305.b.a	ENSGT00940000154742.b	ENSGT00940000159721.g	ENSGT00510000048902.a.e	ENSGT00390000012710.a.b	ENSGT00530000063681.b.a	ENSGT00390000012355.A.a.a.a	ENSGT00940000165661
Tiger tail seahorse	MODERN SPECIES	515	nr6a1a (ENSHCOG00000001676)	olfml2a (ENSHCOG00000001668)	ENSHCOG00000001661	rpl35 (ENSHCOG00000001654)	golga1 (ENSHCOG00000001647)	PPP6C (ENSHCOG00000001623)	ENSHCOG00000001613	ENSHCOG00000001606	ENSHCOG00000001601	sh3glb2a (ENSHCOG00000001595)	dph7 (ENSHCOG00000001585)	mrpl41 (ENSHCOG00000001577)	PNPLA7 (ENSHCOG00000001566)	zfr (ENSHCOG00000001548)	ankrd34bb (ENSHCOG00000001528)	pias2 (ENSHCOG00000001514) #22	arid3c (ENSHCOG00000001493)	ptar1 (ENSHCOG00000001485)	ENSHCOG00000001480	ENSHCOG00000001473	ENSHCOG00000001466	fxn (ENSHCOG00000001463)	ube2l3b (ENSHCOG00000000054)	ydjc (ENSHCOG00000001453)	zgc:86811 (ENSHCOG00000001449)	rad17 (ENSHCOG00000001433)	ENSHCOG00000001408	isl1a (ENSHCOG00000001403)	ENSHCOG00000001396	ENSHCOG00000001376	ENSHCOG00000001349
Percomorphaceae_B	ANCESTRAL SPECIES	7	ENSGT00390000012710.a.b.g.b	ENSGT00940000155290.C	ENSGT01030000234773	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000157749	ENSGT00910000144505	ENSGT00390000007153.a.a.a	ENSGT00940000154578.B	ENSGT00940000153731.a.a	ENSGT00940000166823	ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000160028	ENSGT00940000156117.e.a	ENSGT00390000017892	ENSGT00940000156820.a.a.f	ENSGT00530000063335.B.a.b	ENSGT00940000158634.a.d	ENSGT00390000005811	ENSGT00940000155305.b.a	ENSGT00940000154742.b	ENSGT00940000159721.g	ENSGT00510000048902.a.e	ENSGT00390000012710.a.b.h	ENSGT00390000000543	ENSGT00940000158560	ENSGT00940000161618
Percomorphaceae_C	ANCESTRAL SPECIES	27			ENSGT00940000155290.C	ENSGT01030000234773	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000157749	ENSGT00390000007153.a.a.a	ENSGT00940000154578.B	ENSGT00940000153731.a.a	ENSGT00940000166823	ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000160028	ENSGT00940000156117.e.a	ENSGT00390000017892	ENSGT00940000156820.a.a.f	ENSGT00530000063335.B.a.b	ENSGT00940000158634.a.d	ENSGT00390000005811	ENSGT00940000155305.b.a	ENSGT00940000154742.b	ENSGT00940000159721.g	ENSGT00510000048902.a.e	ENSGT00390000012710.a.b.h
Percomorphaceae_D	ANCESTRAL SPECIES	29			ENSGT00940000155290.C	ENSGT01030000234773	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000157749	ENSGT00390000007153.a.a.a	ENSGT00940000154578.B	ENSGT00940000153731.a.a	ENSGT00940000166823	ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000160028	ENSGT00940000156117.e.a	ENSGT00390000017892	ENSGT00940000156820.a.a.f	ENSGT00530000063335.B.a.b	ENSGT00940000158634.a.d	ENSGT00390000005811	ENSGT00940000155305.b.a	ENSGT00940000154742.b	ENSGT00940000159721.g	ENSGT00510000048902.a.e
Anabantaria	ANCESTRAL SPECIES	47					ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000157749	ENSGT00390000007153.a.a.a	ENSGT00940000154578.B	ENSGT00940000153731.a.a	ENSGT00940000166823	ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000160028	ENSGT00940000156117.e.a	ENSGT00390000017892	ENSGT00940000156820.a.a.f	ENSGT00530000063335.B.a.b	ENSGT00940000158634.a.d	ENSGT00390000005811	ENSGT00940000155305.b.a
Zig-zag eel	MODERN SPECIES	87	dhfr (ENSMAMG00000017483)	ENSMAMG00000027737	fam151b (ENSMAMG00000017597)	ENSMAMG00000017607	ENSMAMG00000017639	ENSMAMG00000017650	ENSMAMG00000017698	golph3a (ENSMAMG00000017735)	ENSMAMG00000017756	isl1a (ENSMAMG00000017775)	ccdc125 (ENSMAMG00000017808)	ENSMAMG00000017821	AK6 (ENSMAMG00000025322)	ENSMAMG00000017865	ENSMAMG00000017870	ENSMAMG00000024421 #22	ENSMAMG00000017909	ENSMAMG00000017927	ENSMAMG00000017941
Anabantoidei	ANCESTRAL SPECIES	4	ENSGT01060000248544.b	ENSGT00940000155841.c.a	ENSGT00940000155290.C	ENSGT01050000246882	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000157749	ENSGT00390000007153.a.a.a	ENSGT00940000154578.B	ENSGT00940000153731.a.a	ENSGT00940000166823	ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000160028	ENSGT00940000156117.e.a	ENSGT00390000017892	ENSGT00940000156820.a.a.f	ENSGT00530000063335.B.a.b	ENSGT00940000158634.a.d	ENSGT00390000005811	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604.j	ENSGT00530000063681.b.a	ENSGT00390000012355.A.a.a.a	ENSGT00940000165661	ENSGT00490000043395	ENSGT00730000110989.c.b
Climbing perch	MODERN SPECIES	22	ENSATEG00000010251	ENSATEG00000010271	ENSATEG00000028598	ENSATEG00000025825	ENSATEG00000029605	NPR3 (ENSATEG00000010351)	ENSATEG00000010387	GOLPH3 (ENSATEG00000010417)	ENSATEG00000028382	ENSATEG00000010443	ccdc125 (ENSATEG00000010465)	ENSATEG00000010493	zgc:86811 (ENSATEG00000010509)	ENSATEG00000010526	ENSATEG00000027233	ENSATEG00000010570 #22	ENSATEG00000010618	mamdc2a (ENSATEG00000010656)	ptar1 (ENSATEG00000027595)	APBA1 (ENSATEG00000010723)	ENTREP1 (ENSATEG00000010776)	TJP2 (ENSATEG00000010798)	FXN (ENSATEG00000027030)	ENSATEG00000010912	ENSATEG00000011192	ENSATEG00000026853	ENSATEG00000011214	ENSATEG00000029581	gtf2h2 (ENSATEG00000011243)	ENSATEG00000011304	marveld2b (ENSATEG00000011334)
Siamese fighting fish	MODERN SPECIES	9	ENSBSLG00000024337	SH3GLB2 (ENSBSLG00000024138)	zfr (ENSBSLG00000023503)	ENSBSLG00000023431	sub1b (ENSBSLG00000023428)	npr3 (ENSBSLG00000023421)	ENSBSLG00000023418	golph3a (ENSBSLG00000023413)	ENSBSLG00000023408	isl1a (ENSBSLG00000023404)	ccdc125 (ENSBSLG00000023396)	rad17 (ENSBSLG00000023383)	zgc:86811 (ENSBSLG00000023380)	ydjc (ENSBSLG00000023378)	ube2l3b (ENSBSLG00000023373)	pias2 (ENSBSLG00000023215) #22	ENSBSLG00000023187	arid3c (ENSBSLG00000023124)	mamdc2a (ENSBSLG00000023096)	ptar1 (ENSBSLG00000023079)	APBA1 (ENSBSLG00000022972)	ENSBSLG00000022952	ENSBSLG00000022945	tjp2b (ENSBSLG00000022502)	ABCA2 (ENSBSLG00000022371)	fxn (ENSBSLG00000022338)	FUT7 (ENSBSLG00000021837)	ENSBSLG00000021825	fam151b (ENSBSLG00000021752)	ankrd34bb (ENSBSLG00000021729)	dhfr (ENSBSLG00000021701)
Carangaria	ANCESTRAL SPECIES	25	ENSGT00940000171469	ENSGT00940000155841.c.a	ENSGT00940000155290.C	ENSGT01030000234773	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000157749	ENSGT00390000007153.a.a.a	ENSGT00940000154578.B	ENSGT00940000153731.a.a	ENSGT00940000166823	ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000160028	ENSGT00940000156117.e.a	ENSGT00390000017892	ENSGT00940000156820.a.a.f	ENSGT00530000063335.B.a.b	ENSGT00940000158634.a.d	ENSGT00390000005811	ENSGT00940000155305.b.a	ENSGT00940000154742.b	ENSGT00940000159721.g	ENSGT00510000048902.a.e
Pleuronectoidei	ANCESTRAL SPECIES	69	ENSGT00940000155290.C	ENSGT01030000234773	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000157749	ENSGT00390000007153.a.a.a	ENSGT00940000154578.B	ENSGT00510000047669	ENSGT00530000066485	ENSGT00940000153731.a.a	ENSGT00940000166823	ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000160028	ENSGT00940000156117.e.a	ENSGT00390000017892	ENSGT00940000156820.a.a.f	ENSGT00530000063335.B.a.b	ENSGT00390000005811	ENSGT00940000155305.b.a
Turbot	MODERN SPECIES	21	ENSSMAG00000000318	ENSSMAG00000000313	npr3 (ENSSMAG00000000302)	golph3a (ENSSMAG00000000248)	ENSSMAG00000000247	ENSSMAG00000026210	ENSSMAG00000000244	isl1a (ENSSMAG00000000228)	ENSSMAG00000023073	ccdc125 (ENSSMAG00000021971)	ENSSMAG00000024431	zgc:86811 (ENSSMAG00000023550)	ENSSMAG00000034299	ENSSMAG00000021713	ENSSMAG00000035488	ENSSMAG00000016781 #22	ENSSMAG00000016993	mamdc2a (ENSSMAG00000017071)	PTAR1 (ENSSMAG00000017170)	APBA1 (ENSSMAG00000017237)	FXN (ENSSMAG00000031712)	ENSSMAG00000017306	ENSSMAG00000017449	tm2d2 (ENSSMAG00000026737)	ENSSMAG00000034039	ENSSMAG00000017502	ENSSMAG00000017524	ENSSMAG00000017529	hdr (ENSSMAG00000017565)	ENSSMAG00000020158	cyb561a3a (ENSSMAG00000017569)
Tongue sole	DUPLICATION
Tongue sole	MODERN SPECIES	397	ENSCSEG00000009192	atxn2 (ENSCSEG00000009072)	ENSCSEG00000009059	mapkapk5 (ENSCSEG00000009028)	ostf1 (ENSCSEG00000009008)	scamp1 (ENSCSEG00000008991)	pdxp (ENSCSEG00000008985)	AP3S1 (ENSCSEG00000008947)	ENSCSEG00000008943	ENSCSEG00000008940	cdo1 (ENSCSEG00000008921)	isl1a (ENSCSEG00000008907)	ENSCSEG00000008889	ENSCSEG00000008887	ENSCSEG00000008875	pias2 (ENSCSEG00000008850) #22	ENSCSEG00000008847	ubac1 (ENSCSEG00000008829)	notch1b (ENSCSEG00000008775)	pmpca (ENSCSEG00000008732)	inpp5e (ENSCSEG00000008722)	ENSCSEG00000008711	ENSCSEG00000008701	ENSCSEG00000008690	ENSCSEG00000008673	GAK (ENSCSEG00000008545)	ENSCSEG00000008532	ENSCSEG00000008523	ENSCSEG00000008488	ENSCSEG00000008470	TMEM8B (ENSCSEG00000008451)
Tongue sole	MODERN SPECIES	398	zfr (ENSCSEG00000009224)	ENSCSEG00000009210	ENSCSEG00000009205	npr3 (ENSCSEG00000009193)	ENSCSEG00000009155	golph3a (ENSCSEG00000009145)	si:dkey-3h3.3 (ENSCSEG00000009130)	ENSCSEG00000009119	ENSCSEG00000009116	isl1a (ENSCSEG00000009101)	ccdc125 (ENSCSEG00000009087)	rad17 (ENSCSEG00000009075)	zgc:86811 (ENSCSEG00000009054)	ydjc (ENSCSEG00000009032)	ube2l3b (ENSCSEG00000009026)	pias2 (ENSCSEG00000009007) #22	arid3c (ENSCSEG00000008983)	mamdc2a (ENSCSEG00000008959)	ptar1 (ENSCSEG00000008942)	APBA1 (ENSCSEG00000008905)	ENTREP1 (ENSCSEG00000008881)	ENSCSEG00000008877	TJP2 (ENSCSEG00000008859)	HMGCR (ENSCSEG00000008804)	fxn (ENSCSEG00000008793)	ENSCSEG00000008788	gcnt4a (ENSCSEG00000008779)	dpp7 (ENSCSEG00000008714)	man1b1b (ENSCSEG00000008686)	cacna1ba (ENSCSEG00000008637)	ENSCSEG00000008615
Carangaria_A	ANCESTRAL SPECIES	50	ENSGT00940000155841.c.a	ENSGT00940000155290.C	ENSGT01030000234773	ENSGT00390000008802.a.a	ENSGT01090000260132.b.a	ENSGT00440000033872	ENSGT00940000157749	ENSGT00390000007153.a.a.a	ENSGT00940000154578.B	ENSGT00940000153731.a.a	ENSGT00940000166823	ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000160028	ENSGT00940000156117.e.a	ENSGT00390000017892	ENSGT00940000156820.a.a.f	ENSGT00530000063335.B.a.b	ENSGT00940000158634.a.d	ENSGT00390000005811	ENSGT00940000155305.b.a	ENSGT00940000154742.b	ENSGT00940000159721.g	ENSGT00510000048902.a.e	ENSGT00940000174976	ENSGT00940000158560	ENSGT00940000161618	ENSGT00390000012710.a.b.g.b
Seriola	ANCESTRAL SPECIES	7	ENSGT00940000156516	ENSGT00740000116886	ENSGT00940000160018	ENSGT00940000155771.d	ENSGT00730000110989.c.b	ENSGT00440000033872	ENSGT00940000157749	ENSGT00390000007153.a.a.a	ENSGT00940000154578.B	ENSGT00940000153731.a.a	ENSGT00940000166823	ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000160028	ENSGT00940000156117.e.a	ENSGT00390000017892	ENSGT00940000156820.a.a.f	ENSGT00530000063335.B.a.b	ENSGT01030000234983	ENSGT00940000158633.b	ENSGT00940000156763.b.b	ENSGT00390000013158	ENSGT00390000018644	ENSGT00940000159669.a	ENSGT00940000159633	ENSGT00940000153231.A	ENSGT00390000016002.o.a	ENSGT00940000156621.e.a
Greater amberjack	MODERN SPECIES	6	ENSSDUG00000009186	SDF2L1 (ENSSDUG00000009179)	sdf2l1 (ENSSDUG00000009162)	marveld2b (ENSSDUG00000009140)	oclnb (ENSSDUG00000009109)	npr3 (ENSSDUG00000009078)	ENSSDUG00000009029	golph3a (ENSSDUG00000009019)	ENSSDUG00000009002	isl1a (ENSSDUG00000008979)	ccdc125 (ENSSDUG00000008957)	rad17 (ENSSDUG00000008923)	zgc:86811 (ENSSDUG00000008897)	ydjc (ENSSDUG00000008854)	ube2l3b (ENSSDUG00000008840)	pias2 (ENSSDUG00000008777) #22	ENSSDUG00000008762	arid3c (ENSSDUG00000008748)	mamdc2a (ENSSDUG00000008700)	ptar1 (ENSSDUG00000008654)	ENSSDUG00000007053	APBA1 (ENSSDUG00000006871)	ENTREP1 (ENSSDUG00000006859)	ENSSDUG00000006839	ENSSDUG00000006826	ENSSDUG00000006817	ENSSDUG00000006807	PIP5KL1 (ENSSDUG00000006793)	PNPLA7 (ENSSDUG00000006718)	mrpl41 (ENSSDUG00000006706)	dph7 (ENSSDUG00000006691)
Yellowtail amberjack	MODERN SPECIES	3287	TOP3B (ENSSLDG00000010665)	ENSSLDG00000010729	sdf2l1 (ENSSLDG00000010771)	marveld2b (ENSSLDG00000010792)	oclnb (ENSSLDG00000010815)	npr3 (ENSSLDG00000010853)	ENSSLDG00000010910	golph3a (ENSSLDG00000010963)	ENSSLDG00000010988	isl1a (ENSSLDG00000011001)	ccdc125 (ENSSLDG00000011028)	rad17 (ENSSLDG00000011082)	zgc:86811 (ENSSLDG00000011150)	ydjc (ENSSLDG00000011175)	ube2l3b (ENSSLDG00000011206)	pias2 (ENSSLDG00000011235) #22	arid3c (ENSSLDG00000011296)	ENSSLDG00000011361	mamdc2a (ENSSLDG00000011394)	ptar1 (ENSSLDG00000011421)	ENSSLDG00000011536	APBA1 (ENSSLDG00000011900)	ENTREP1 (ENSSLDG00000011928)	ENSSLDG00000011942	PIP5KL1 (ENSSLDG00000011958)	PNPLA7 (ENSSLDG00000011990)	dph7 (ENSSLDG00000012074)	mrpl41 (ENSSLDG00000012096)	zgc:64051 (ENSSLDG00000012110)	araf (ENSSLDG00000012136)	imp4 (ENSSLDG00000012188)
Barramundi perch	MODERN SPECIES	9						golph3a (ENSLCAG00010015468)	ENSLCAG00010015473	ENSLCAG00010015475	ENSLCAG00010015478	isl1a (ENSLCAG00010015482)	ENSLCAG00010015484	rad17 (ENSLCAG00010015489)	zgc:86811 (ENSLCAG00010015493)	ydjc (ENSLCAG00010015494)	ube2l3b (ENSLCAG00010015500)	pias2 (ENSLCAG00010015513) #22	arid3c (ENSLCAG00010015543)	mamdc2a (ENSLCAG00010015552)	ENSLCAG00010015574	camk2b1 (ENSLCAG00010015611)	ENSLCAG00010015781	ENSLCAG00010015782	ENSLCAG00010015784	ENSLCAG00010015785	si:dkey-174n20.1 (ENSLCAG00010015786)	ENSLCAG00010015795	kremen1 (ENSLCAG00010015812)	coq5 (ENSLCAG00010015817)	ZNRF3 (ENSLCAG00010015822)	xbp1 (ENSLCAG00010015824)	ENSLCAG00010015828
Eupercaria	ANCESTRAL SPECIES	37			ENSGT01010000224027	ENSGT00940000159669.b	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000157749	ENSGT00390000007153.a.a.a	ENSGT00940000154578.B	ENSGT00940000153731.a.a	ENSGT00940000166823	ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000160028	ENSGT00940000156117.e.a	ENSGT00390000017892	ENSGT00940000156820.a.a.f	ENSGT00530000063335.B.a.b	ENSGT00940000158634.a.d	ENSGT00390000005811	ENSGT00940000155305.b.a	ENSGT00940000154742.b	ENSGT00940000159721.g	ENSGT00510000048902.a.e	ENSGT00390000012710.a.b.h
Tetraodontidae	ANCESTRAL SPECIES																	ENSGT01030000234539.a.a.b.b #22
Fugu	MODERN SPECIES	13	rad17 (ENSTRUG00000002152)	ccdc125 (ENSTRUG00000002108)	ENSTRUG00000032436	isl1a (ENSTRUG00000013818)	ENSTRUG00000024169	ENSTRUG00000027680	si:dkey-3h3.3 (ENSTRUG00000025167)	ENSTRUG00000013803	ENSTRUG00000031807	npr3 (ENSTRUG00000013730)	sub1 (ENSTRUG00000032045)	ENSTRUG00000013668	ENSTRUG00000020538	dph7 (ENSTRUG00000013649)	mrpl41 (ENSTRUG00000013645)	pias2 (ENSTRUG00000013569) #22	arid3c (ENSTRUG00000013561)	nelfb (ENSTRUG00000013482)	arrdc1a (ENSTRUG00000013423)	ENSTRUG00000013417	ENSTRUG00000001353	ENSTRUG00000025973	GCNT4 (ENSTRUG00000013353)	ENSTRUG00000028730	HMGCR (ENSTRUG00000013186)	fxn (ENSTRUG00000020980)	tjp2b (ENSTRUG00000012991)	ENTREP1 (ENSTRUG00000012960)	APBA1 (ENSTRUG00000012897)	ENSTRUG00000032065	rflna (ENSTRUG00000026001)
Tetraodon	MODERN SPECIES	26	atg4b (ENSTNIG00000003259)	boka (ENSTNIG00000003258)	FARP2 (ENSTNIG00000003257)	chac2 (ENSTNIG00000003255)	chac2 (ENSTNIG00000003256)	psme4b (ENSTNIG00000003254)	kdm2aa (ENSTNIG00000003239)	ENSTNIG00000003238	ENSTNIG00000003237	prkcda (ENSTNIG00000003227)	RFT1 (ENSTNIG00000003226)	eefsec (ENSTNIG00000003225)	TBCEL (ENSTNIG00000003224)	sc5d (ENSTNIG00000003223)	olfm1a (ENSTNIG00000003202)	pias2 (ENSTNIG00000003200) #22	gadd45gb.1 (ENSTNIG00000003192)	sema3ga (ENSTNIG00000003189)	ENSTNIG00000003187	H2AZ1 (ENSTNIG00000003186)	ENSTNIG00000003185	pepd (ENSTNIG00000003184)	ENSTNIG00000003183	ENSTNIG00000003180	plbd1a (ENSTNIG00000003179)	pick1 (ENSTNIG00000003178)	HNRNPLL (ENSTNIG00000003177)	cdk1 (ENSTNIG00000003176)	NEBL (ENSTNIG00000003175)	ssr1 (ENSTNIG00000003174)	BTBD3 (ENSTNIG00000003173)
Eupecaria_A	ANCESTRAL SPECIES	6	ENSGT00940000164721.a	ENSGT00390000000459.c	ENSGT01010000224027	ENSGT00940000159669.b	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000157749	ENSGT00390000007153.a.a.a	ENSGT00940000154578.B	ENSGT00940000153731.a.a	ENSGT00940000166823	ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000160028	ENSGT00940000156117.e.a	ENSGT00390000017892	ENSGT00940000156820.a.a.f	ENSGT00530000063335.B.a.b	ENSGT00940000158634.a.d	ENSGT00390000005811	ENSGT00940000155305.b.a	ENSGT00940000154742.b	ENSGT00940000159721.g	ENSGT00510000048902.a.e	ENSGT00390000012710.a.b.g.b	ENSGT00390000012710.a.b.g.a
Ballan wrasse	MODERN SPECIES	38			zfr (ENSLBEG00000010783)	ENSLBEG00000010756	sub1b (ENSLBEG00000010728)	npr3 (ENSLBEG00000010705)	ENSLBEG00000010664	golph3a (ENSLBEG00000010628)	ENSLBEG00000010590	isl1a (ENSLBEG00000010555)	ENSLBEG00000010507	rad17 (ENSLBEG00000010393)	zgc:86811 (ENSLBEG00000010348)	ydjc (ENSLBEG00000010204)	ube2l3b (ENSLBEG00000010180)	pias2 (ENSLBEG00000010054) #22	arid3c (ENSLBEG00000010015)	ENSLBEG00000009991	mamdc2a (ENSLBEG00000009948)	ptar1 (ENSLBEG00000009890)	APBA1 (ENSLBEG00000009816)	ENTREP1 (ENSLBEG00000009768)	npy8br (ENSLBEG00000009742)	KLHL22 (ENSLBEG00000009721)	tbx16 (ENSLBEG00000009638)	CABIN1 (ENSLBEG00000009513)	NEFL (ENSLBEG00000009487)	dock5 (ENSLBEG00000009368)	vsig8b (ENSLBEG00000009333)	LRRTM4 (ENSLBEG00000009282)	LRRTM4 (ENSLBEG00000009268)
Eupecaria_B	ANCESTRAL SPECIES	6	ENSGT00940000164721.a	ENSGT00390000000459.c	ENSGT01010000224027	ENSGT00940000159669.b	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000157749	ENSGT00390000007153.a.a.a	ENSGT00940000154578.B	ENSGT00940000153731.a.a	ENSGT00940000166823	ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000160028	ENSGT00940000156117.e.a	ENSGT00390000017892	ENSGT00940000156820.a.a.f	ENSGT00530000063335.B.a.b	ENSGT00940000158634.a.d	ENSGT00390000005811	ENSGT00940000155305.b.a	ENSGT00940000154742.b	ENSGT00940000159721.g	ENSGT00510000048902.a.e	ENSGT00390000012710.a.b.g.b	ENSGT00390000012710.a.b.g.a
Perciformes	ANCESTRAL SPECIES	51			ENSGT01030000234773	ENSGT00940000166509	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000157749	ENSGT00390000007153.a.a.a	ENSGT00940000154578.B	ENSGT00940000153731.a.a	ENSGT00940000166823	ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000160028	ENSGT00940000156117.e.a	ENSGT00390000017892	ENSGT00940000156820.a.a.f	ENSGT00530000063335.B.a.b	ENSGT00940000158634.a.d	ENSGT00390000005811	ENSGT00940000155305.b.a	ENSGT00940000159721.g	ENSGT00510000048902.a.e
Perciformes_a	ANCESTRAL SPECIES	31	ENSGT00940000156763.b.b	ENSGT00940000159669.a	ENSGT00940000159633	ENSGT01030000234773	ENSGT00940000166509	ENSGT00440000033872	ENSGT00940000157749	ENSGT00390000007153.a.a.a	ENSGT00940000154578.B	ENSGT00940000153731.a.a	ENSGT00940000166823	ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000160028	ENSGT00940000156117.e.a	ENSGT00390000017892	ENSGT00940000156820.a.a.f	ENSGT00530000063335.B.a.b	ENSGT00940000158634.a.d	ENSGT00390000005811	ENSGT00940000155305.b.a	ENSGT00940000159721.g	ENSGT00510000048902.a.e	ENSGT00940000155290.C	ENSGT00940000153231.A	ENSGT00390000016002.o.a	ENSGT00940000156621.e.a	ENSGT00940000155188.B.b.d
Pike perch	MODERN SPECIES	16	araf (ENSSLUG00000005839)	ENSSLUG00000005816	ENSSLUG00000005811	npr3 (ENSSLUG00000005754)	ENSSLUG00000005744	PDZD2 (ENSSLUG00000005714)	golph3a (ENSSLUG00000005705)	ENSSLUG00000005689	isl1a (ENSSLUG00000005671)	ENSSLUG00000005659	ccdc125 (ENSSLUG00000005626)	rad17 (ENSSLUG00000005519)	zgc:86811 (ENSSLUG00000005487)	ydjc (ENSSLUG00000005480)	ube2l3b (ENSSLUG00000005450)	pias2 (ENSSLUG00000005430) #22	arid3c (ENSSLUG00000005404)	ENSSLUG00000005391	mamdc2a (ENSSLUG00000005339)	ptar1 (ENSSLUG00000005312)	APBA1 (ENSSLUG00000005183)	ENTREP1 (ENSSLUG00000005165)	tjp2b (ENSSLUG00000025742)	fxn (ENSSLUG00000025711)	HMGCR (ENSSLUG00000025708)	gcnt4a (ENSSLUG00000025702)	fam169aa (ENSSLUG00000025701)	zfr (ENSSLUG00000025645)	imp4 (ENSSLUG00000025616)	RABL6 (ENSSLUG00000025610)	TRAF2 (ENSSLUG00000025591)
Cottioidei	ANCESTRAL SPECIES	58					ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000157749	ENSGT00390000007153.a.a.a	ENSGT00940000154578.B	ENSGT00940000153731.a.a	ENSGT00940000166823	ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000160028	ENSGT00940000156117.e.a	ENSGT00390000017892	ENSGT00940000156820.a.a.f	ENSGT00940000156716	ENSGT00940000166302	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a	ENSGT00940000153231.A	ENSGT00390000016002.o.a	ENSGT00940000156621.e.a	ENSGT00940000155188.B.b.d	ENSGT00940000164876.a	ENSGT00940000164721.a	ENSGT00390000000459.c
Lumpfish	MODERN SPECIES	24	ENSCLMG00005005017	ENSCLMG00005005016	sub1b (ENSCLMG00005005014)	npr3 (ENSCLMG00005005011)	ENSCLMG00005005008	ENSCLMG00005005006	ENSCLMG00005005004	golph3a (ENSCLMG00005005003)	ENSCLMG00005005001	isl1a (ENSCLMG00005004999)	ccdc125 (ENSCLMG00005004994)	rad17 (ENSCLMG00005004987)	zgc:86811 (ENSCLMG00005004985)	ydjc (ENSCLMG00005004982)	ube2l3b (ENSCLMG00005004980)	pias2 (ENSCLMG00005004977) #22	ENSCLMG00005004973	arid3c (ENSCLMG00005004972)	mamdc2a (ENSCLMG00005004971)	ENSCLMG00005004970	ptar1 (ENSCLMG00005004969)	APBA1 (ENSCLMG00005004967)	adam28 (ENSCLMG00005004964)	ppp3cca (ENSCLMG00005004235)	vps37ba (ENSCLMG00005004228)	abcb9 (ENSCLMG00005004226)	RABL6 (ENSCLMG00005004221)	TRAF2 (ENSCLMG00005004208)	tncb (ENSCLMG00005002270)	ENSCLMG00005002251	ENSCLMG00005002246
Eupecaria_C	ANCESTRAL SPECIES	3	ENSGT00940000164721.a	ENSGT00390000000459.c	ENSGT01010000224027	ENSGT00940000159669.b	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000157749	ENSGT00390000007153.a.a.a	ENSGT00940000154578.B	ENSGT00940000153731.a.a	ENSGT00940000166823	ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000160028
Gilthead seabream	MODERN SPECIES	19	rflna (ENSSAUG00010000202)	ENSSAUG00010025407	ccdc92 (ENSSAUG00010025403)	chmp7 (ENSSAUG00010025398)	ENSSAUG00010025397	lgi3 (ENSSAUG00010025393)	fgfr1a (ENSSAUG00010011744)	tm2d2 (ENSSAUG00010011528)	ENSSAUG00010011507	ENSSAUG00010011505	ENSSAUG00010011501	zfr (ENSSAUG00010011074)	ENSSAUG00010011052	UQCC3 (ENSSAUG00010011050)	ube2l3b (ENSSAUG00010011048)	pias2 (ENSSAUG00010011038) #22	ENSSAUG00010011034	arid3c (ENSSAUG00010011032)	perf1 (ENSSAUG00010011031)	ENSSAUG00010011030	gtf2h2 (ENSSAUG00010011026)	oclnb (ENSSAUG00010011023)	sdf2l1 (ENSSAUG00010011020)	marveld2b (ENSSAUG00010011017)	ENSSAUG00010011013	TOP3B (ENSSAUG00010011010)	ppm1f (ENSSAUG00010011006)	ENSSAUG00010011004	gcnt4a (ENSSAUG00010011003)	ENSSAUG00010011000	ENSSAUG00010010998
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	9	ENSGT00940000164721.a	ENSGT00390000000459.c	ENSGT01010000224027	ENSGT00940000159669.b	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000157749	ENSGT00390000007153.a.a.a	ENSGT00940000154578.B	ENSGT00940000153731.a.a	ENSGT00940000166823	ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000160028
European seabass	MODERN SPECIES	13	nsmfb (ENSDLAG00005023611)	ENSDLAG00005035021	ENSDLAG00005023686	ENSDLAG00005023683	ENSDLAG00005028282	ENSDLAG00005023659	golph3a (ENSDLAG00005030253)	ENSDLAG00005023652	isl1a (ENSDLAG00005032430)	ENSDLAG00005032012	ccdc125 (ENSDLAG00005023648)	ENSDLAG00005023637	zgc:86811 (ENSDLAG00005027040)	ENSDLAG00005031400	ENSDLAG00005029674	ENSDLAG00005003596 #22	ENSDLAG00005033609	ENSDLAG00005026872	ENSDLAG00005006439	ENSDLAG00005033500	ENSDLAG00005031704	ENSDLAG00005003557	ENSDLAG00005028963	ENSDLAG00005013040	ENSDLAG00005011971	ENSDLAG00005006360	ENSDLAG00005034241	ENSDLAG00005030778	ENSDLAG00005026911	ENSDLAG00005016933	ENSDLAG00005034780
Large yellow croaker	MODERN SPECIES	2			ENSLCRG00005001952	HIVEP1 (ENSLCRG00005001957)	ENSLCRG00005001966	golph3a (ENSLCRG00005001970)	ENSLCRG00005001973	isl1a (ENSLCRG00005001976)	ENSLCRG00005001982	ccdc125 (ENSLCRG00005001984)	rad17 (ENSLCRG00005001995)	ENSLCRG00005002020	zgc:86811 (ENSLCRG00005002027)	ydjc (ENSLCRG00005002069)	ube2l3b (ENSLCRG00005002078)	pias2 (ENSLCRG00005002095) #22	arid3c (ENSLCRG00005002152)	stxbp1b (ENSLCRG00005002181)	niban2b (ENSLCRG00005005491)	ENSLCRG00005005539	FUT7 (ENSLCRG00005005542)	ABCA2 (ENSLCRG00005005551)	ENSLCRG00005005570	ENSLCRG00005005572	pop5 (ENSLCRG00005005573)	unc119.1 (ENSLCRG00005005575)	ENSLCRG00005005577	ENSLCRG00005005578	rbp4l (ENSLCRG00005005581)	IDUA (ENSLCRG00005005588)	tnksb (ENSLCRG00005005703)
Ovalentaria	ANCESTRAL SPECIES	4	ENSGT00390000012710.a.b.g.b	ENSGT00940000155290.C	ENSGT01030000234773	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000157749	ENSGT00910000144505	ENSGT00390000007153.a.a.a	ENSGT00940000154578.B	ENSGT00940000153731.a.a	ENSGT00940000166823	ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000160028	ENSGT00940000156117.e.a	ENSGT00390000017892	ENSGT00940000156820.a.a.f	ENSGT00530000063335.B.a.b	ENSGT00940000158634.a.d	ENSGT00390000005811	ENSGT00940000155305.b.a	ENSGT00940000154742.b	ENSGT00940000159721.g	ENSGT00510000048902.a.e	ENSGT00390000000543	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604.j
Ovalentaria_B	ANCESTRAL SPECIES	34	ENSGT00390000012710.a.b.g.b	ENSGT00940000155290.C	ENSGT01030000234773	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000157749	ENSGT00910000144505	ENSGT00390000007153.a.a.a	ENSGT00940000154578.B	ENSGT00940000153731.a.a	ENSGT00940000166823	ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000160028	ENSGT00940000156117.e.a	ENSGT00390000017892	ENSGT00940000156820.a.a.f	ENSGT00530000063335.B.a.b	ENSGT00940000158634.a.d	ENSGT00390000005811	ENSGT00940000155305.b.a	ENSGT00940000154742.b	ENSGT00940000159721.g	ENSGT00510000048902.a.e	ENSGT00390000000543	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604.j
Pomacentridae	ANCESTRAL SPECIES	98	ENSGT00390000012710.a.b.g.b	ENSGT00940000155290.C	ENSGT01030000234773	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000157749	ENSGT00910000144505	ENSGT00390000007153.a.a.a	ENSGT00940000154578.B	ENSGT00940000153731.a.a	ENSGT00940000166823	ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000160028	ENSGT00940000156117.e.a	ENSGT00390000017892	ENSGT00940000156820.a.a.f	ENSGT00510000048902.a.e	ENSGT00940000159721.g	ENSGT00940000154742.b	ENSGT00940000155305.b.a	ENSGT00390000005811	ENSGT00940000158634.a.d	ENSGT00530000063335.B.a.b	ENSGT00950000183002.B.a.a	ENSGT00530000063843.a	ENSGT00940000159838	ENSGT00940000155422.bb
Pomacentridae_A	ANCESTRAL SPECIES	88	ENSGT00390000012710.a.b.g.b	ENSGT00940000155290.C	ENSGT01030000234773	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000157749	ENSGT00910000144505	ENSGT00390000007153.a.a.a	ENSGT00940000154578.B	ENSGT00940000153731.a.a	ENSGT00940000166823	ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000160028	ENSGT00940000156117.e.a	ENSGT00390000017892	ENSGT00940000156820.a.a.f	ENSGT00510000048902.a.e	ENSGT00940000159721.g	ENSGT00940000154742.b	ENSGT00940000155305.b.a	ENSGT00390000005811	ENSGT00940000158634.a.d.a	ENSGT00940000158634.a.d.b	ENSGT00530000063335.B.a.b	ENSGT00950000183002.B.a.a	ENSGT00530000063843.a	ENSGT00940000159838
Amphiprion	ANCESTRAL SPECIES	149									ENSGT00940000153731.a.a	ENSGT00940000166823	ENSGT00940000179758	ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000160028	ENSGT00940000156117.e.a	ENSGT00390000017892	ENSGT00940000156820.a.a.f	ENSGT00510000048902.a.e	ENSGT00940000159721.g	ENSGT00940000154742.b	ENSGT00940000155305.b.a	ENSGT00390000005811	ENSGT00940000158634.a.d.a	ENSGT00530000063335.B.a.b	ENSGT00950000183002.B.a.a	ENSGT00530000063843.a	ENSGT00940000159838	ENSGT00940000155422.bb
Clown anemonefish	MODERN SPECIES	1819															ube2l3b (ENSAOCG00000016507)	pias2 (ENSAOCG00000016487) #22	ENSAOCG00000016339	arid3c (ENSAOCG00000016324)	mamdc2a (ENSAOCG00000016286)	ptar1 (ENSAOCG00000001116)	APBA1 (ENSAOCG00000016219)	fam169aa (ENSAOCG00000016138)	gcnt4a (ENSAOCG00000016111)	HMGCR (ENSAOCG00000016096)	fxn (ENSAOCG00000016015)	ENSAOCG00000001100
Orange clownfish	MODERN SPECIES	19									isl1a (ENSAPEG00000012376)	ccdc125 (ENSAPEG00000012439)	ENSAPEG00000012447	rad17 (ENSAPEG00000012452)	zgc:86811 (ENSAPEG00000012479)	ydjc (ENSAPEG00000012513)	ube2l3b (ENSAPEG00000012533)	pias2 (ENSAPEG00000012550) #22	arid3c (ENSAPEG00000012743)	mamdc2a (ENSAPEG00000012829)	ptar1 (ENSAPEG00000012867)	APBA1 (ENSAPEG00000012903)	ENSAPEG00000012941	ENSAPEG00000013011	HMGCR (ENSAPEG00000013032)	fxn (ENSAPEG00000013094)	ENSAPEG00000013114	tjp2b (ENSAPEG00000013132)	ENTREP1 (ENSAPEG00000013159)	ENSAPEG00000013277	ENSAPEG00000013288	noxa1 (ENSAPEG00000013318)	dpp7 (ENSAPEG00000013335)
Spiny chromis	MODERN SPECIES	873									gps1 (ENSAPOG00000002418)	slc25a23b (ENSAPOG00000000917)	pdxdc1 (ENSAPOG00000002479)	gspt1l (ENSAPOG00000002524)	ENSAPOG00000002535	RRN3 (ENSAPOG00000002550)	ENSAPOG00000002612	pias2 (ENSAPOG00000002631) #22
Bicolor damselfish	MODERN SPECIES	591											ccdc125 (ENSSPAG00000011864)	rad17 (ENSSPAG00000011897)	zgc:86811 (ENSSPAG00000011919)	ydjc (ENSSPAG00000011940)	ube2l3b (ENSSPAG00000011950)	pias2 (ENSSPAG00000011965) #22	arid3c (ENSSPAG00000011996)	mamdc2a (ENSSPAG00000012012)	ptar1 (ENSSPAG00000012054)	APBA1 (ENSSPAG00000012091)	fam169aa (ENSSPAG00000012121)	ENSSPAG00000012141	gcnt4a (ENSSPAG00000012157)
Cichlidae	ANCESTRAL SPECIES	55	ENSGT00390000012710.a.b.g.a	ENSGT00940000155290.C	ENSGT01030000234773	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000157749	ENSGT00910000144505	ENSGT00390000007153.a.a.a	ENSGT00940000154578.B	ENSGT00940000153731.a.a	ENSGT00940000166823	ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000160028	ENSGT00940000156117.e.a	ENSGT00390000017892	ENSGT00940000156820.a.a.f	ENSGT00390000005811	ENSGT00940000155305.b.a	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604.j	ENSGT00940000154149.a.b	ENSGT00940000155127.a.b	ENSGT00950000183002.B.a.a	ENSGT00530000063843.a	ENSGT00940000159838	ENSGT00940000155422.bb
Midas cichlid	MODERN SPECIES	1278															ube2l3b (ENSACIG00000001265)	pias2 (ENSACIG00000001110) #22	arid3c (ENSACIG00000001080)	mamdc2a (ENSACIG00000001039)	ptar1 (ENSACIG00000001010)	man1b1b (ENSACIG00000000934)	dpp7 (ENSACIG00000000824)	noxa1 (ENSACIG00000000773)	ENSACIG00000000755
Pseudocrenilabrinae	ANCESTRAL SPECIES	37	ENSGT00530000063681.b.a	ENSGT00940000155290.C	ENSGT01030000234773	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000157749	ENSGT00910000144505	ENSGT00390000007153.a.a.a	ENSGT00940000154578.B	ENSGT00940000153731.a.a	ENSGT00940000166823	ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000160028	ENSGT00390000017892	ENSGT00940000156820.a.a.f	ENSGT00390000005811	ENSGT00940000155305.b.a	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604.j	ENSGT00940000154149.a.b	ENSGT00940000155127.a.b	ENSGT00950000183002.B.a.a	ENSGT00530000063843.a	ENSGT00940000159838	ENSGT00550000074961.a	ENSGT00940000153772.B
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	28	ENSGT00530000063681.b.a	ENSGT00940000155290.C	ENSGT01030000234773	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000157749	ENSGT00910000144505	ENSGT00390000007153.a.a.a	ENSGT00940000154578.B	ENSGT00940000153731.a.a	ENSGT00940000166823	ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000160028	ENSGT00390000017892	ENSGT00940000156820.a.a.f	ENSGT00390000005811	ENSGT00940000155305.b.a	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604.j	ENSGT00940000154149.a.b	ENSGT00940000155127.a.b	ENSGT00950000183002.B.a.a	ENSGT00530000063843.a	ENSGT00940000159838	ENSGT00550000074961.a	ENSGT00940000153772.B
Haplochromini	DUPLICATION
Haplochromini	ANCESTRAL SPECIES	30	ENSGT00530000063681.b.a	ENSGT00940000155290.C	ENSGT01030000234773	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000157749	ENSGT00910000144505	ENSGT00390000007153.a.a.a	ENSGT00940000154578.B	ENSGT00940000153731.a.a	ENSGT00940000166823	ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b.g #22	ENSGT00940000160028	ENSGT00390000017892	ENSGT00940000156820.a.a.f	ENSGT00390000005811	ENSGT00940000155305.b.a	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604.j	ENSGT00940000154149.a.b	ENSGT00940000155127.a.b	ENSGT00950000183002.B.a.a	ENSGT00530000063843.a	ENSGT00940000159838	ENSGT00550000074961.a	ENSGT00940000153772.B
Haplochromini_A	ANCESTRAL SPECIES	32	ENSGT00530000063681.b.a	ENSGT00940000155290.C	ENSGT01030000234773	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000157749	ENSGT00910000144505	ENSGT00390000007153.a.a.a	ENSGT00940000154578.B	ENSGT00940000153731.a.a	ENSGT00940000166823	ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b.g #22	ENSGT00940000160028	ENSGT00390000017892	ENSGT00940000156820.a.a.f	ENSGT00390000005811	ENSGT00940000155305.b.a	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604.j	ENSGT00940000154149.a.b	ENSGT00940000155127.a.b	ENSGT00950000183002.B.a.a	ENSGT00530000063843.a	ENSGT00940000159838	ENSGT00550000074961.a	ENSGT00940000153772.B
Haplochromini_B	ANCESTRAL SPECIES	44	ENSGT00530000063681.b.a	ENSGT00940000155290.C	ENSGT01030000234773	ENSGT00390000008802.a.a	ENSGT00440000033872	ENSGT00940000157749	ENSGT00910000144505	ENSGT00390000007153.a.a.a	ENSGT00940000154578.B	ENSGT00940000153731.a.a	ENSGT00940000181527	ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b.g #22	ENSGT00940000160028	ENSGT00390000017892	ENSGT00940000156820.a.a.f	ENSGT00390000005811	ENSGT00940000155305.b.a	ENSGT00940000158560	ENSGT00940000161618	ENSGT00440000038604.j	ENSGT00940000154149.a.b	ENSGT00940000155127.a.b	ENSGT00940000180886	ENSGT00950000183002.B.a.a	ENSGT00530000063843.a	ENSGT00940000159838	ENSGT00550000074961.a
Eastern happy	MODERN SPECIES	3	sub1b (ENSACLG00000016875)	npr3 (ENSACLG00000016943)	ENSACLG00000017002	ENSACLG00000017014	ENSACLG00000017207	golph3a (ENSACLG00000017212)	ENSACLG00000017230	isl1a (ENSACLG00000017272)	ENSACLG00000017295	ccdc125 (ENSACLG00000017333)	rad17 (ENSACLG00000017343)	zgc:86811 (ENSACLG00000017375)	ydjc (ENSACLG00000017403)	ENSACLG00000017448	ube2l3b (ENSACLG00000017455)	pias2 (ENSACLG00000017476) #22	arid3c (ENSACLG00000017567)	ptar1 (ENSACLG00000017605)	APBA1 (ENSACLG00000017620)	fxn (ENSACLG00000017696)	HMGCR (ENSACLG00000017730)	ABCA2 (ENSACLG00000017831)	FUT7 (ENSACLG00000018010)	ENSACLG00000018056	niban2b (ENSACLG00000018067)	stxbp1b (ENSACLG00000018134)	ENSACLG00000018224	ENSACLG00000018240	ENSACLG00000018251	noxa1 (ENSACLG00000018256)	dpp7 (ENSACLG00000018297)
Zebra mbuna	MODERN SPECIES	1094	ggt5a (ENSMZEG00005018640)	arrdc1a (ENSMZEG00005018638)	ENSMZEG00005018633	nelfb (ENSMZEG00005018628)	entpd2a.1 (ENSMZEG00005018626)	fgf17 (ENSMZEG00005018507)	FKBP15 (ENSMZEG00005018492)	ccn1l2 (ENSMZEG00005018490)	ENSMZEG00005018483	ENSMZEG00005018473	tubb2b (ENSMZEG00005018470)	ENSMZEG00005018466	ENSMZEG00005018462	ENSMZEG00005018459	ENSMZEG00005018456	pias2 (ENSMZEG00005018453) #22	arid3c (ENSMZEG00005018451)	ptar1 (ENSMZEG00005018445)	APBA1 (ENSMZEG00005018435)	FXN (ENSMZEG00005018430)	HMGCR (ENSMZEG00005018425)	ABCA2 (ENSMZEG00005018396)	ENSMZEG00005017846	ENSMZEG00005017826	FUT7 (ENSMZEG00005017821)	ENSMZEG00005017819	niban2b (ENSMZEG00005017814)	stxbp1b (ENSMZEG00005017808)	ENSMZEG00005017806	WHRN (ENSMZEG00005017800)	noxa1 (ENSMZEG00005017794)
P. nyererei	MODERN SPECIES	348							golph3a (ENSPNYG00000006691)	ENSPNYG00000006674	isl1a (ENSPNYG00000006651)	ccdc125 (ENSPNYG00000006639)	rad17 (ENSPNYG00000006615)	ENSPNYG00000006604	zgc:86811 (ENSPNYG00000006583)	ydjc (ENSPNYG00000006570)	ube2l3b (ENSPNYG00000006556)	pias2 (ENSPNYG00000006405) #22	arid3c (ENSPNYG00000006357)	ptar1 (ENSPNYG00000006345)	APBA1 (ENSPNYG00000006301)	fxn (ENSPNYG00000006288)	HMGCR (ENSPNYG00000006232)	ABCA2 (ENSPNYG00000006126)	FUT7 (ENSPNYG00000006099)	ENSPNYG00000006077	ENSPNYG00000005970	niban2b (ENSPNYG00000005900)	stxbp1b (ENSPNYG00000005853)	noxa1 (ENSPNYG00000005827)	dpp7 (ENSPNYG00000005776)	ENSPNYG00000005751	golga1 (ENSPNYG00000005715)
Burton s mouthbrooder	MODERN SPECIES	611						ENSHBUG00000022316	ENSHBUG00000022291	ENSHBUG00000022272	ENSHBUG00000022193	isl1a (ENSHBUG00000021312)	ccdc125 (ENSHBUG00000021285)	rad17 (ENSHBUG00000021268)	zgc:86811 (ENSHBUG00000021248)	ydjc (ENSHBUG00000021209)	ube2l3b (ENSHBUG00000021175)	pias2 (ENSHBUG00000021152) #22
Haplochromini	ANCESTRAL SPECIES																	ENSGT01030000234539.a.a.b.b.h #22
Haplochromini_A	ANCESTRAL SPECIES																	ENSGT01030000234539.a.a.b.b.h #22
Haplochromini_B	ANCESTRAL SPECIES																	ENSGT01030000234539.a.a.b.b.h #22
Zebra mbuna	MODERN SPECIES	14	fam151b (ENSMZEG00005021240)	zfr (ENSMZEG00005021243)	ENSMZEG00005021248	sub1b (ENSMZEG00005021252)	npr3 (ENSMZEG00005021256)	ENSMZEG00005021262	golph3a (ENSMZEG00005021273)	ENSMZEG00005021277	isl1a (ENSMZEG00005021281)	ENSMZEG00005021283	ENSMZEG00005021287	rad17 (ENSMZEG00005021292)	zgc:86811 (ENSMZEG00005021300)	ydjc (ENSMZEG00005021304)	ube2l3b (ENSMZEG00005021306)	pias2 (ENSMZEG00005021311) #22
Lyretail cichlid	MODERN SPECIES	382	ENSNBRG00000008434	sub1b (ENSNBRG00000008451)	npr3 (ENSNBRG00000008484)	ENSNBRG00000008493	ENSNBRG00000008516	ENSNBRG00000008560	golph3a (ENSNBRG00000008567)	si:dkey-3h3.3 (ENSNBRG00000008573)	isl1a (ENSNBRG00000008593)	ENSNBRG00000008638	ENSNBRG00000008649	rad17 (ENSNBRG00000008670)	zgc:86811 (ENSNBRG00000008702)	ydjc (ENSNBRG00000008734)	ube2l3b (ENSNBRG00000008744)	pias2 (ENSNBRG00000008761) #22	arid3c (ENSNBRG00000008813)	ptar1 (ENSNBRG00000008889)	APBA1 (ENSNBRG00000008905)	fxn (ENSNBRG00000008946)	HMGCR (ENSNBRG00000008965)	ENSNBRG00000009010	ENSNBRG00000009060	ENSNBRG00000009274	FUT7 (ENSNBRG00000010028)	ENSNBRG00000010085	niban2b (ENSNBRG00000010154)	stxbp1b (ENSNBRG00000010196)	ENSNBRG00000010303	ENSNBRG00000010330	noxa1 (ENSNBRG00000010365)
Nile tilapia	DUPLICATION
Nile tilapia	MODERN SPECIES	3	npr3 (ENSONIG00000013952)	ENSONIG00000030448	ENSONIG00000035127	ENSONIG00000037357	golph3a (ENSONIG00000013949)	ENSONIG00000013948	ENSONIG00000028197	isl1a (ENSONIG00000013945)	ccdc125 (ENSONIG00000013944)	rad17 (ENSONIG00000013936)	zgc:86811 (ENSONIG00000013935)	ydjc (ENSONIG00000013933)	ENSONIG00000033311	ENSONIG00000038225	ube2l3b (ENSONIG00000013931)	pias2 (ENSONIG00000013927) #22	arid3c (ENSONIG00000013925)	ptar1 (ENSONIG00000013924)	APBA1 (ENSONIG00000013918)	ENSONIG00000032671	ENSONIG00000034062	arrdc1a (ENSONIG00000020231)	ENSONIG00000020230	nelfb (ENSONIG00000020229)	fgf17 (ENSONIG00000020227)	FKBP15 (ENSONIG00000020226)	ccn1l2 (ENSONIG00000038451)	ENSONIG00000020224	ENSONIG00000037430	ENSONIG00000032695	ENSONIG00000029706
Nile tilapia	MODERN SPECIES	396														ENSONIG00000028588	ENSONIG00000035067	pias2 (ENSONIG00000027593) #22	ENSONIG00000028517	ENSONIG00000034946
Atherinomorphae	ANCESTRAL SPECIES	54												ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000160028	ENSGT00390000017892	ENSGT00940000156820.a.a.f	ENSGT00390000005811	ENSGT00940000155305.b.a	ENSGT01090000260180	ENSGT00940000158884	ENSGT00940000156516	ENSGT00740000116886	ENSGT00940000160018	ENSGT00940000155771.d	ENSGT00730000110989.c.b	ENSGT00490000043395	ENSGT00940000165661	ENSGT00390000012355.A.a.a.a
Oryzias	ANCESTRAL SPECIES	65	ENSGT00940000165661	ENSGT00490000043395	ENSGT00730000110989.c.b	ENSGT00940000155771.d	ENSGT00940000160018	ENSGT00740000116886	ENSGT00940000156516	ENSGT00940000158884	ENSGT01090000260180	ENSGT00940000155305.b.a	ENSGT00940000156820.a.a.f	ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000160028	ENSGT00390000017892	ENSGT00940000164100.A.c.b.b.e.b	ENSGT00950000182960.a.b
Oryzias_a	ANCESTRAL SPECIES	69	ENSGT00390000012355.A.a.a.a	ENSGT00940000165661	ENSGT00490000043395	ENSGT00730000110989.c.b	ENSGT00940000155771.d	ENSGT00940000160018	ENSGT00940000156516	ENSGT00940000158884	ENSGT01090000260180	ENSGT00940000155305.b.a	ENSGT00940000156820.a.a.f	ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000160028	ENSGT00390000017892	ENSGT00940000164100.A.c.b.b.e.b	ENSGT00950000182960.a.b.r
Japanese Medaka HdrR	MODERN SPECIES	23	gtf2h2 (ENSORLG00000028550)	oclnb (ENSORLG00000017272)	marveld2b (ENSORLG00000017278)	il-17n (ENSORLG00000029840)	sdf2l1 (ENSORLG00000024163)	TOP3B (ENSORLG00000017296)	ppm1f (ENSORLG00000017302)	ENSORLG00000026679	ENSORLG00000023660	HMGCR (ENSORLG00000017313)	ENSORLG00000017317	rad17 (ENSORLG00000017335)	AK6 (ENSORLG00000017342)	ydjc (ENSORLG00000017345)	ube2l3b (ENSORLG00000017349)	pias2 (ENSORLG00000017353) #22	ENSORLG00000023271	arid3c (ENSORLG00000017354)	ptar1 (ENSORLG00000020189)	ENSORLG00000024751	ENSORLG00000024673	ENSORLG00000024117	ENSORLG00000024578	ENSORLG00000022599	ENSORLG00000017168	ENSORLG00000022360	ENSORLG00000017381	ENSORLG00000024176	ENSORLG00000030268	ENSORLG00000022843	ENSORLG00000027319
Chinese medaka	MODERN SPECIES	730				zfr (ENSOSIG00000018290)	ENSOSIG00000018276	ENSOSIG00000018273	ENSOSIG00000018269	oclnb (ENSOSIG00000018268)	marveld2b (ENSOSIG00000018243)	TOP3B (ENSOSIG00000018211)	HMGCR (ENSOSIG00000018056)	ENSOSIG00000018008	rad17 (ENSOSIG00000017998)	ydjc (ENSOSIG00000017994)	ube2l3b (ENSOSIG00000017952)	pias2 (ENSOSIG00000017841) #22	arid3c (ENSOSIG00000017800)
Oryzias_b	ANCESTRAL SPECIES	56	ENSGT00940000165661	ENSGT00490000043395	ENSGT00730000110989.c.b	ENSGT00940000155771.d	ENSGT00940000160018	ENSGT00740000116886	ENSGT00940000156516	ENSGT00940000158884	ENSGT01090000260180	ENSGT00940000155305.b.a	ENSGT00940000156820.a.a.f	ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000160028	ENSGT00390000017892	ENSGT00530000063843.a	ENSGT00940000159838	ENSGT00940000155422.bb	ENSGT00940000155275.c.b.b	ENSGT00940000156811.a	ENSGT00940000159428.f	ENSGT00940000156902.a	ENSGT00940000177919	ENSGT00940000153877.a.b	ENSGT00530000065225	ENSGT00980000198897	ENSGT00940000155816.b	ENSGT00940000159393
Indian medaka	MODERN SPECIES	36	gtf2h2 (ENSOMEG00000003197)	oclnb (ENSOMEG00000003171)	marveld2b (ENSOMEG00000003160)	sdf2l1 (ENSOMEG00000003143)	ENSOMEG00000003138	TOP3B (ENSOMEG00000003122)	ppm1f (ENSOMEG00000003068)	ENSOMEG00000003038	ENSOMEG00000003022	HMGCR (ENSOMEG00000003003)	ENSOMEG00000023621	rad17 (ENSOMEG00000023608)	zgc:86811 (ENSOMEG00000023591)	ydjc (ENSOMEG00000023580)	ube2l3b (ENSOMEG00000023571)	pias2 (ENSOMEG00000023562) #22	arid3c (ENSOMEG00000023548)	ptar1 (ENSOMEG00000023532)	ENSOMEG00000023509	dpp7 (ENSOMEG00000023444)	man1b1b (ENSOMEG00000023320)	cacna1ba (ENSOMEG00000023284)	EEIG1 (ENSOMEG00000023233)	ENSOMEG00000023218	zdhhc12a (ENSOMEG00000023195)	ENSOMEG00000023185	SET (ENSOMEG00000023178)	si:ch211-51h9.7 (ENSOMEG00000023155)	rasgef1ba (ENSOMEG00000023143)	prkg2 (ENSOMEG00000023095)	bmp3 (ENSOMEG00000023080)
Javanese ricefish	MODERN SPECIES	23	SNX2 (ENSOJAG00000006276)	ENSOJAG00000006137	ENSOJAG00000006129	ENSOJAG00000005948	ENSOJAG00000005926	ENSOJAG00000005915	ENSOJAG00000005906	ENSOJAG00000005863	ppm1f (ENSOJAG00000005844)	ENSOJAG00000005817	HMGCR (ENSOJAG00000010070)	ENSOJAG00000009817	rad17 (ENSOJAG00000009794)	AK6 (ENSOJAG00000009779)	ydjc (ENSOJAG00000009772)	pias2 (ENSOJAG00000009574) #22	arid3c (ENSOJAG00000009467)	ptar1 (ENSOJAG00000009452)	ENSOJAG00000009443	ENSOJAG00000009426	ENSOJAG00000009351	ENSOJAG00000008957	ENSOJAG00000008866	ENSOJAG00000008843	ENSOJAG00000008731	ENSOJAG00000008683	ENSOJAG00000008671	TOP3B (ENSOJAG00000008174)	ENSOJAG00000008154	sdf2l1 (ENSOJAG00000008147)	marveld2b (ENSOJAG00000008136)
Cyprinodontiformes	ANCESTRAL SPECIES	59												ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000160028	ENSGT00390000017892	ENSGT00940000156820.a.a.f	ENSGT00390000005811	ENSGT00940000155305.b.a	ENSGT00940000160018	ENSGT00940000155771.d	ENSGT00730000110989.c.b	ENSGT00490000043395.m	ENSGT00940000165661	ENSGT00390000012355.A.a.a.a	ENSGT00530000063681.b.a	ENSGT00390000012710.a.b.h	ENSGT00940000155290.C.db	ENSGT01030000234773
Cyprinodontoidei	ANCESTRAL SPECIES																	ENSGT01030000234539.a.a.b.b #22
Poeciliinae	ANCESTRAL SPECIES	55	ENSGT00940000165661	ENSGT00490000043395.m	ENSGT00730000110989.c.b	ENSGT00940000155771.d	ENSGT00940000160018	ENSGT00940000155305.b.a	ENSGT00390000005811	ENSGT00940000156820.a.a.f	ENSGT00390000017892	ENSGT00940000160028	ENSGT00390000002575	ENSGT00440000038604.j	ENSGT00940000161618	ENSGT00940000158560	ENSGT00390000000543	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000153654.ve.a	ENSGT00440000039046	ENSGT00390000015930
Poecilia	ANCESTRAL SPECIES	117										ENSGT00940000160028	ENSGT00390000002575	ENSGT00440000038604.j	ENSGT00940000161618	ENSGT00940000158560	ENSGT00940000174976	ENSGT01030000234539.a.a.b.b #22	ENSGT00940000153654.ve.a	ENSGT00440000039046	ENSGT00390000015930
NAME_6	ANCESTRAL SPECIES	541																ENSGT01030000234539.a.a.b.b #22	ENSGT00940000153654.ve.a	ENSGT00440000039046	ENSGT00390000015930
Amazon molly	MODERN SPECIES	784														ABCA2 (ENSPFOG00000000292)	ENSPFOG00000000282	pias2 (ENSPFOG00000000261) #22	ube2l3b (ENSPFOG00000000239)	rad17 (ENSPFOG00000000209)	zgc:86811 (ENSPFOG00000000193)
Sailfin molly	MODERN SPECIES	3301																ENSPLAG00000002235 #22
Guppy	MODERN SPECIES	7										ENSPREG00000011153	ydjc (ENSPREG00000011121)	ENSPREG00000011096	FUT7 (ENSPREG00000011085)	ABCA2 (ENSPREG00000010988)	ENSPREG00000010952	pias2 (ENSPREG00000010891) #22	rad17 (ENSPREG00000010825)	ube2l3b (ENSPREG00000010788)	zgc:86811 (ENSPREG00000010775)
Platyfish	MODERN SPECIES	3	sdf2l1 (ENSXMAG00000004473)	ENSXMAG00000029422	HMGCR (ENSXMAG00000006482)	fxn (ENSXMAG00000026768)	ENSXMAG00000009438	ptar1 (ENSXMAG00000018186)	arid3c (ENSXMAG00000023890)	ENSXMAG00000024971	ydjc (ENSXMAG00000012792)	ENSXMAG00000023132	NPDC1 (ENSXMAG00000018967)	ENSXMAG00000000674	ENSXMAG00000014014	ENSXMAG00000013651	paxx (ENSXMAG00000003796)	pias2 (ENSXMAG00000026350) #22	ENSXMAG00000029927	ube2l3b (ENSXMAG00000029408)	rad17 (ENSXMAG00000030085)	zgc:86811 (ENSXMAG00000025350)
NAME_4	ANCESTRAL SPECIES																	ENSGT01030000234539.a.a.b.b #22
Mummichog	MODERN SPECIES	1279																ENSFHEG00000011671 #22	ENSFHEG00000011679
Sheepshead minnow	MODERN SPECIES	315														dpp7 (ENSCVAG00000017384)	man1b1b (ENSCVAG00000017341)	pias2 (ENSCVAG00000017308) #22	ube2l3b (ENSCVAG00000017252)	rad17 (ENSCVAG00000017237)	PNPLA7 (ENSCVAG00000017226)	mrpl41 (ENSCVAG00000017212)	dph7 (ENSCVAG00000017203)	sh3glb2a (ENSCVAG00000017184)	ENSCVAG00000017035	ENSCVAG00000017025	PPP6C (ENSCVAG00000017013)	golga1 (ENSCVAG00000016953)	rpl35 (ENSCVAG00000000427)	ENSCVAG00000016745	olfml2a (ENSCVAG00000016741)	nr6a1a (ENSCVAG00000016696)	nr5a1a (ENSCVAG00000016667)
Aplocheiloidei	ANCESTRAL SPECIES	309												ENSGT00440000039046	ENSGT00390000015930	ENSGT00390000002575	ENSGT00940000153654.ve.a	ENSGT01030000234539.a.a.b.b #22
Turquoise killifish	MODERN SPECIES	1011																ENSNFUG00015011959 #22
Mangrove rivulus	MODERN SPECIES	337											rad17 (ENSKMAG00000017010)	zgc:86811 (ENSKMAG00000016969)	ENSKMAG00000016948	ydjc (ENSKMAG00000016941)	ube2l3b (ENSKMAG00000016934)	pias2 (ENSKMAG00000016893) #22	ENSKMAG00000016878	arid3c (ENSKMAG00000016848)