Bovidae ANCESTRAL SPECIES 30 ENSGT00940000161817 #8 ENSGT00950000182815.a.a.b #9 ENSGT00940000158107 #10 ENSGT00940000159152.d #11 ENSGT00390000003878 #12 ENSGT00390000012859 #13 ENSGT00940000160287 #14 ENSGT00940000157326.h #15 ENSGT00940000157326.g.a ##15 ENSGT00940000159168 ENSGT00950000183162.b #16 ENSGT00390000006260 #17 ENSGT00550000074618.a.b #18 ENSGT00390000018326 #19 ENSGT00940000156986 #20 ENSGT00390000011749 #22 ENSGT00410000029064 #21 ENSGT00940000159617 #23 ENSGT00390000017890 #24 ENSGT01030000234564.a.a.b.b #25 ENSGT00390000006503.b #26 ENSGT00390000013419 #27 ENSGT00940000159066 #28 ENSGT00940000160485.d ENSGT00940000156161.B #29 ENSGT00940000159475 #30 ENSGT00530000063205.B #31 ENSGT00940000158928 #33 ENSGT00940000162544 ENSGT00390000006975 #32 ENSGT00940000157066 Caprinae ANCESTRAL SPECIES 31 ENSGT00940000161817 #8 ENSGT00950000182815.a.a.b #9 ENSGT00940000158107 #10 ENSGT00940000159152.d #11 ENSGT00390000003878 #12 ENSGT00390000012859.c #13 ENSGT00940000160287 #14 ENSGT00940000157326.h #15 ENSGT00940000159168 ENSGT00950000183162.b #16 ENSGT00390000006260 #17 ENSGT00550000074618.a.b.cb.a #18 ENSGT00390000018326 #19 ENSGT00940000156986 #20 ENSGT00410000029064 #21 ENSGT00390000011749 #22 ENSGT00940000159617 #23 ENSGT00390000017890 #24 ENSGT01030000234564.a.a.b.b #25 ENSGT00390000006503.b #26 ENSGT00390000013419 #27 ENSGT00940000159066 #28 ENSGT00940000160485.d ENSGT00940000156161.B #29 ENSGT00940000159475 #30 ENSGT00530000063205.B #31 ENSGT00390000006975 #32 ENSGT00940000158928 #33 ENSGT00940000162544 ENSGT00940000157066 ENSGT00440000033329.a.a.b #36 Rambouillet Sheep MODERN SPECIES 18 ZNF703 (ENSOARG00020019326) #7 KCNU1 (ENSOARG00020014695) #8 UNC5D (ENSOARG00020011472) #9 DUSP26 (ENSOARG00020011341) #10 RNF122 (ENSOARG00020011268) #11 TTI2 (ENSOARG00020010997) #12 MAK16 (ENSOARG00020010915) #13 FUT10 (ENSOARG00020010547) #14 NRG1 (ENSOARG00020007228) #15 PURG (ENSOARG00020006924) #16 TEX15 (ENSOARG00020006861) #17 ENSOARG00020006789 #18 UBXN8 (ENSOARG00020006469) #19 ENSOARG00020024560 #20 SMIM18 (ENSOARG00020024548) #21 GTF2E2 (ENSOARG00020024521) #22 RBPMS (ENSOARG00020024472) #23 DCTN6 (ENSOARG00020024447) #24 MBOAT4 (ENSOARG00020024438) #25 LEPROTL1 (ENSOARG00020024432) #26 SARAF (ENSOARG00020024418) #27 DUSP4 (ENSOARG00020024395) #28 TNKS (ENSOARG00020024333) #29 PPP1R3B (ENSOARG00020024278) #30 ERI1 (ENSOARG00020024255) #31 ENSOARG00020024244 #32 MFHAS1 (ENSOARG00020024215) #33 ENSOARG00020024190 #34 ENSOARG00020024166 #35 LONRF1 (ENSOARG00020024079) #36 TRMT9B (ENSOARG00020024043) #37 Goat DUPLICATION Goat DUPLICATION Goat MODERN SPECIES 29 FGD1 (ENSCHIG00000006298) ENSCHIG00000017837 ENSCHIG00000011389 ENSCHIG00000016672 SMC1A (ENSCHIG00000008648) ENSCHIG00000025979 RIBC1 (ENSCHIG00000014380) HSD17B10 (ENSCHIG00000017468) HUWE1 (ENSCHIG00000020699) ENSCHIG00000019840 FAM120C (ENSCHIG00000014638) WNK3 (ENSCHIG00000001939) ENSCHIG00000007597 ENSCHIG00000011936 NBDY (ENSCHIG00000012160) ENSCHIG00000009409 #22 KLF8 (ENSCHIG00000011453) RRAGB (ENSCHIG00000018786) ALAS2 (ENSCHIG00000011854) APEX2 (ENSCHIG00000019916) PFKFB1 (ENSCHIG00000023388) ENSCHIG00000015519 ENSCHIG00000021372 ENSCHIG00000011583 ENSCHIG00000015092 KDM6A (ENSCHIG00000026240) DIPK2B (ENSCHIG00000014928) ENSCHIG00000011225 FUNDC1 (ENSCHIG00000019943) EFHC2 (ENSCHIG00000005059) ENSCHIG00000025084 Goat MODERN SPECIES 298 ENSCHIG00000000363 #22 Goat MODERN SPECIES 19 ENSCHIG00000015679 UNC5D (ENSCHIG00000023904) #9 ENSCHIG00000021604 ENSCHIG00000010271 DUSP26 (ENSCHIG00000019000) #10 RNF122 (ENSCHIG00000007153) #11 TTI2 (ENSCHIG00000027034) #12 ENSCHIG00000017057 #13 FUT10 (ENSCHIG00000025805) #14 NRG1 (ENSCHIG00000002290) #15 WRN (ENSCHIG00000014991) PURG (ENSCHIG00000024210) #16 ENSCHIG00000008011 #18 UBXN8 (ENSCHIG00000022025) #19 GSR (ENSCHIG00000016848) #20 ENSCHIG00000021273 #22 SMIM18 (ENSCHIG00000006114) #21 ENSCHIG00000022177 RBPMS (ENSCHIG00000027156) #23 DCTN6 (ENSCHIG00000020652) #24 MBOAT4 (ENSCHIG00000001062) #25 LEPROTL1 (ENSCHIG00000021192) #26 SARAF (ENSCHIG00000012032) #27 ENSCHIG00000026850 DUSP4 (ENSCHIG00000011289) #28 ENSCHIG00000025550 TNKS (ENSCHIG00000007929) #29 ENSCHIG00000024143 PPP1R3B (ENSCHIG00000006614) #30 ERI1 (ENSCHIG00000011907) #31 MFHAS1 (ENSCHIG00000017108) #33 Bovinae ANCESTRAL SPECIES 36 ENSGT00940000158107 #10 ENSGT00940000159152.d #11 ENSGT00390000003878 #12 ENSGT00390000012859 #13 ENSGT00940000160287 #14 ENSGT00940000157326.g.b ##15 ENSGT00950000185250.a ENSGT00940000157326.h #15 ENSGT00940000157326.g.a ##15 ENSGT00940000159168 ENSGT00950000183162.b #16 ENSGT00390000006260 #17 ENSGT00550000074618.a.b.ab #18 ENSGT00390000018326 #19 ENSGT00940000156986.e #20 ENSGT00390000011749 #22 ENSGT00410000029064 #21 ENSGT00940000159617 #23 ENSGT00390000017890 #24 ENSGT01030000234564.a.a.b.b #25 ENSGT00390000006503.b #26 ENSGT00390000013419 #27 ENSGT00940000159066 #28 ENSGT00940000160485.d ENSGT00940000156161.B #29 ENSGT00940000159475 #30 ENSGT00530000063205.B #31 ENSGT00940000158928 #33 ENSGT00940000162544 ENSGT00390000006975 #32 ENSGT00940000157066 American bison MODERN SPECIES 3033 UNC5D (ENSBBBG00000022009) #9 DUSP26 (ENSBBBG00000021760) #10 RNF122 (ENSBBBG00000021747) #11 ENSBBBG00000006919 TTI2 (ENSBBBG00000021704) #12 MAK16 (ENSBBBG00000005754) #13 FUT10 (ENSBBBG00000021641) #14 ENSBBBG00000021620 NRG1 (ENSBBBG00000021603) #15 WRN (ENSBBBG00000021421) PURG (ENSBBBG00000021368) #16 ENSBBBG00000021357 #17 ENSBBBG00000005700 #18 UBXN8 (ENSBBBG00000021318) #19 ENSBBBG00000021281 #20 GTF2E2 (ENSBBBG00000021159) #22 SMIM18 (ENSBBBG00000021149) #21 RBPMS (ENSBBBG00000021143) #23 DCTN6 (ENSBBBG00000021119) #24 MBOAT4 (ENSBBBG00000021108) #25 LEPROTL1 (ENSBBBG00000021104) #26 SARAF (ENSBBBG00000021094) #27 DUSP4 (ENSBBBG00000007057) #28 ENSBBBG00000021064 TNKS (ENSBBBG00000021042) #29 PPP1R3B (ENSBBBG00000005637) #30 ERI1 (ENSBBBG00000020969) #31 MFHAS1 (ENSBBBG00000005630) #33 CLDN23 (ENSBBBG00000005627) #32 PRAG1 (ENSBBBG00000020917) LONRF1 (ENSBBBG00000020902) #36 Bos ANCESTRAL SPECIES 33 ENSGT00940000159152.d #11 ENSGT00390000003878 #12 ENSGT00390000012859 #13 ENSGT00940000160287 #14 ENSGT00940000157326.g.b ##15 ENSGT00950000185250.a ENSGT00940000157326.h #15 ENSGT00940000157326.g.a ##15 ENSGT00940000159168 ENSGT00950000183162.b #16 ENSGT00390000006260 #17 ENSGT00550000074618.a.b.ab.b #18 ENSGT00390000018326 #19 ENSGT00940000156986.e #20 ENSGT00410000029064 #21 ENSGT00390000011749 #22 ENSGT00940000159617 #23 ENSGT00390000017890 #24 ENSGT01030000234564.a.a.b.b #25 ENSGT00390000006503.b #26 ENSGT00390000013419 #27 ENSGT00940000159066 #28 ENSGT00940000160485.d ENSGT00940000156161.B #29 ENSGT00940000159475 #30 ENSGT00530000063205.B.a #31 ENSGT00940000158928 #33 ENSGT00940000162544 ENSGT00390000006975 #32 ENSGT00940000157066 ENSGT00440000033329.a.a.b #36 Bos_a ANCESTRAL SPECIES 31 ENSGT00390000015655.a.h ENSGT00940000161817 #8 ENSGT00950000182815.a.a.b #9 ENSGT00940000158107 #10 ENSGT00940000159152.d #11 ENSGT00390000003878 #12 ENSGT00390000012859 #13 ENSGT00940000160287 #14 ENSGT00940000157326.h #15 ENSGT00940000159168 ENSGT00950000183162.b #16 ENSGT00390000006260 #17 ENSGT00550000074618.a.b.ab.a.a.b #18 ENSGT00390000018326 #19 ENSGT00940000156986.e #20 ENSGT00390000011749 #22 ENSGT00410000029064 #21 ENSGT00940000159617 #23 ENSGT00390000017890 #24 ENSGT01030000234564.a.a.b.b #25 ENSGT00390000006503.b #26 ENSGT00390000013419 #27 ENSGT00940000159066 #28 ENSGT00940000160485.d ENSGT00940000156161.B #29 ENSGT00940000159475 #30 ENSGT00530000063205.B.a #31 ENSGT00940000158928 #33 ENSGT00940000157521.a.b ENSGT00940000162544 ENSGT00390000006975 #32 Domestic yak MODERN SPECIES 20 ENSBGRG00000020449 KCNU1 (ENSBGRG00000020595) #8 UNC5D (ENSBGRG00000021584) #9 DUSP26 (ENSBGRG00000023452) #10 RNF122 (ENSBGRG00000023501) #11 TTI2 (ENSBGRG00000023566) #12 MAK16 (ENSBGRG00000023705) #13 FUT10 (ENSBGRG00000023882) #14 NRG1 (ENSBGRG00000024055) #15 WRN (ENSBGRG00000024851) PURG (ENSBGRG00000024954) #16 TEX15 (ENSBGRG00000024980) #17 ENSBGRG00000025021 #18 UBXN8 (ENSBGRG00000025073) #19 ENSBGRG00000025167 #20 GTF2E2 (ENSBGRG00000025414) #22 SMIM18 (ENSBGRG00000025437) #21 RBPMS (ENSBGRG00000025458) #23 DCTN6 (ENSBGRG00000025501) #24 MBOAT4 (ENSBGRG00000025516) #25 LEPROTL1 (ENSBGRG00000025525) #26 SARAF (ENSBGRG00000025546) #27 ENSBGRG00000025563 ENSBGRG00000025569 ENSBGRG00000025583 DUSP4 (ENSBGRG00000025603) #28 ENSBGRG00000025645 TNKS (ENSBGRG00000025654) #29 PPP1R3B (ENSBGRG00000025712) #30 ENSBGRG00000007106 ENSBGRG00000007141 #31 Wild yak MODERN SPECIES 2204 GTF2E2 (ENSBMUG00000014607) #22 SMIM18 (ENSBMUG00000014616) #21 RBPMS (ENSBMUG00000014680) #23 DCTN6 (ENSBMUG00000014725) #24 Bos_b ANCESTRAL SPECIES 35 ENSGT00940000158107 #10 ENSGT00940000159152.d #11 ENSGT00390000003878 #12 ENSGT00390000012859 #13 ENSGT00940000160287 #14 ENSGT00950000185250.a ENSGT00940000157326.h #15 ENSGT00940000157326.g.a ##15 ENSGT00940000159168 ENSGT00950000183162.b #16 ENSGT00390000006260 #17 ENSGT00550000074618.a.b.ab.b #18 ENSGT00390000018326 #19 ENSGT00940000156986.e #20 ENSGT00410000029064 #21 ENSGT00390000011749 #22 ENSGT00940000159617 #23 ENSGT00390000017890 #24 ENSGT01030000234564.a.a.b.b #25 ENSGT00390000006503.b #26 ENSGT01100000263481.n.a.a.a.b.a.b.b.b.a.b ENSGT00390000013419 #27 ENSGT00940000159066 #28 ENSGT00940000160485.d ENSGT00940000156161.B #29 ENSGT00940000159475 #30 ENSGT00530000063205.B.a #31 ENSGT00940000158928 #33 ENSGT00940000162544 ENSGT00390000006975 #32 ENSGT00940000157066 Cow MODERN SPECIES 19 DUSP26 (ENSBTAG00000016413) #10 RNF122 (ENSBTAG00000016411) #11 TTI2 (ENSBTAG00000015463) #12 MAK16 (ENSBTAG00000033504) #13 FUT10 (ENSBTAG00000005454) #14 ENSBTAG00000008325 NRG1 (ENSBTAG00000004150) #15 NRG1 (ENSBTAG00000054057) ##15 WRN (ENSBTAG00000021592) PURG (ENSBTAG00000039328) #16 TEX15 (ENSBTAG00000017083) #17 PPP2CB (ENSBTAG00000009245) #18 UBXN8 (ENSBTAG00000004173) #19 GSR (ENSBTAG00000007115) #20 SMIM18 (ENSBTAG00000051612) #21 GTF2E2 (ENSBTAG00000012691) #22 RBPMS (ENSBTAG00000033727) #23 DCTN6 (ENSBTAG00000000744) #24 MBOAT4 (ENSBTAG00000000743) #25 LEPROTL1 (ENSBTAG00000013581) #26 ENSBTAG00000053762 SARAF (ENSBTAG00000013579) #27 DUSP4 (ENSBTAG00000044208) #28 ENSBTAG00000006562 TNKS (ENSBTAG00000001463) #29 PPP1R3B (ENSBTAG00000010606) #30 ERI1 (ENSBTAG00000009685) #31 MFHAS1 (ENSBTAG00000015913) #33 ENSBTAG00000053191 CLDN23 (ENSBTAG00000007051) #32 PRAG1 (ENSBTAG00000000357) Hybrid Bos Indicus MODERN SPECIES 19 RNF122 (ENSBIXG00005000855) #11 TTI2 (ENSBIXG00005000873) #12 MAK16 (ENSBIXG00005010420) #13 FUT10 (ENSBIXG00005000890) #14 ENSBIXG00005010504 NRG1 (ENSBIXG00005010916) #15 WRN (ENSBIXG00005007468) PURG (ENSBIXG00005011064) #16 TEX15 (ENSBIXG00005006421) #17 ENSBIXG00005011125 #18 UBXN8 (ENSBIXG00005001033) #19 ENSBIXG00005011202 ENSBIXG00005001037 GSR (ENSBIXG00005011265) #20 SMIM18 (ENSBIXG00005011292) #21 GTF2E2 (ENSBIXG00005006917) #22 ENSBIXG00005001104 #23 DCTN6 (ENSBIXG00005011479) #24 MBOAT4 (ENSBIXG00005011503) #25 LEPROTL1 (ENSBIXG00005011548) #26 ENSBIXG00005011558 SARAF (ENSBIXG00005001131) #27 DUSP4 (ENSBIXG00005011666) #28 TNKS (ENSBIXG00005011776) #29 PPP1R3B (ENSBIXG00005011848) #30 ENSBIXG00005001190 #31 MFHAS1 (ENSBIXG00005011912) #33 ENSBIXG00005012017 CLDN23 (ENSBIXG00005012050) #32 PRAG1 (ENSBIXG00005012100) LONRF1 (ENSBIXG00005005822) #36