Murinae	ANCESTRAL SPECIES	2	ENSGT00940000157630.a.a.a.a	ENSGT00940000158724	ENSGT00950000183083.b	ENSGT00940000161800	ENSGT00510000049215	ENSGT00940000161688.f.b.a.b	ENSGT00940000154712.c.a.b.b	ENSGT00940000154469.a.a.a.a.a.b #14	ENSGT00390000003768 #15	ENSGT00390000013727.c #16	ENSGT01030000234558.A.a.a.b #17	ENSGT00390000007643 #18	ENSGT00940000154513.A #19	ENSGT00940000154513.B #20	ENSGT00940000159291 #21	ENSGT00390000012490 #22	ENSGT00390000017402 #23	ENSGT00390000013828 #25	ENSGT00940000153395.b #26	ENSGT00940000159980	ENSGT00940000159408 #27	ENSGT00940000160929 #28	ENSGT00940000157931 #29	ENSGT00390000012439 #30	ENSGT00930000151037 #31	ENSGT00940000157064.a.a #32	ENSGT00390000015408 #33	ENSGT00870000136521 #34	ENSGT00950000183084.b.a.b #35	ENSGT00940000154343 #36	ENSGT00390000003592 #37
Mus	ANCESTRAL SPECIES	3	ENSGT00940000157630.a.a.a.a	ENSGT00940000158724	ENSGT00950000183083.b	ENSGT00940000161800	ENSGT00510000049215	ENSGT00940000161688.f.b.a.b	ENSGT00940000154712.c.a.b.b	ENSGT00940000154469.a.a.a.a.a.b #14	ENSGT00390000003768 #15	ENSGT00390000013727.c #16	ENSGT01030000234558.A.a.a.b #17	ENSGT00390000007643 #18	ENSGT00940000154513.A #19	ENSGT00940000154513.B #20	ENSGT00940000159291 #21	ENSGT00390000012490 #22	ENSGT00390000017402 #23	ENSGT00390000013828 #25	ENSGT00940000153395.b #26	ENSGT00940000159980	ENSGT00940000159408 #27	ENSGT00940000160929 #28	ENSGT00940000157931 #29	ENSGT00390000012439 #30	ENSGT00930000151037 #31	ENSGT00940000157064.a.a #32	ENSGT00390000015408 #33	ENSGT00870000136521 #34	ENSGT00950000183084.b.a.b #35	ENSGT00940000154343 #36	ENSGT00390000003592 #37
Mus_A	ANCESTRAL SPECIES	3	ENSGT00940000157630.a.a.a.a	ENSGT00940000158724	ENSGT00950000183083.b	ENSGT00940000161800	ENSGT00510000049215	ENSGT00940000161688.f.b.a.b	ENSGT00940000154712.c.a.b.b	ENSGT00940000154469.a.a.a.a.a.b #14	ENSGT00390000003768 #15	ENSGT00390000013727.c #16	ENSGT01030000234558.A.a.a.b #17	ENSGT00390000007643 #18	ENSGT00940000154513.A #19	ENSGT00940000154513.B #20	ENSGT00940000159291 #21	ENSGT00390000012490 #22	ENSGT00390000017402 #23	ENSGT00390000013828 #25	ENSGT00940000153395.b #26	ENSGT00940000159980	ENSGT00940000159408 #27	ENSGT00940000160929 #28	ENSGT00940000157931 #29	ENSGT00390000012439 #30	ENSGT00930000151037 #31	ENSGT00940000157064.a.a #32	ENSGT00390000015408 #33	ENSGT00870000136521 #34	ENSGT00950000183084.b.a.b #35	ENSGT00940000154343 #36	ENSGT00390000003592 #37
Mus_B	ANCESTRAL SPECIES	5	ENSGT00940000158724	ENSGT00950000183083.b	ENSGT00940000161800	ENSGT00510000049215	ENSGT00940000154712.c.a.b.b.d.a.a.a.a	ENSGT00940000154712.c.a.b.b.d.a.a.a.b	ENSGT00940000154469.a.a.a.a.a.b #14	ENSGT00390000003768 #15	ENSGT00940000168197	ENSGT00390000013727.c #16	ENSGT01030000234558.A.a.a.b #17	ENSGT00390000007643 #18	ENSGT00940000154513.A #19	ENSGT00940000154513.B #20	ENSGT00940000159291 #21	ENSGT00390000012490 #22	ENSGT00390000017402 #23	ENSGT00390000013828 #25	ENSGT00940000153395.b #26	ENSGT00940000159980	ENSGT00940000159408 #27	ENSGT00940000160929 #28	ENSGT00940000157931 #29	ENSGT00390000012439 #30	ENSGT00930000151037 #31	ENSGT00940000157064.a.a #32	ENSGT00390000015408 #33	ENSGT00870000136521 #34	ENSGT00950000183084.b.a.b #35	ENSGT00940000154343 #36	ENSGT00390000003592 #37
Mus_C	ANCESTRAL SPECIES	2	ENSGT00940000157630.a.a.a.b	ENSGT00940000157630.a.a.a.a	ENSGT00940000158724	ENSGT00950000183083.b	ENSGT00940000161800	ENSGT00510000049215	ENSGT00940000154469.a.a.a.a.a.b #14	ENSGT00390000003768 #15	ENSGT00940000168197	ENSGT00390000013727.c #16	ENSGT01030000234558.A.a.a.b #17	ENSGT00390000007643 #18	ENSGT00940000154513.A #19	ENSGT00940000154513.B #20	ENSGT00940000159291 #21	ENSGT00390000012490 #22	ENSGT00390000017402 #23	ENSGT00390000013828 #25	ENSGT00940000153395.b #26	ENSGT00940000159980	ENSGT00940000159408 #27	ENSGT00940000160929 #28	ENSGT00940000157931 #29	ENSGT00390000012439 #30	ENSGT00930000151037 #31	ENSGT00940000157064.a.a #32	ENSGT00390000015408 #33	ENSGT00870000136521 #34	ENSGT00950000183084.b.a.b #35	ENSGT00940000154343 #36	ENSGT00390000003592 #37
Steppe mouse	MODERN SPECIES	3147								Zfp933 (ENSMSIG00000010977) #14	Miip (ENSMSIG00000011005) #15	Mfn2 (ENSMSIG00000011070) #16	Plod1 (ENSMSIG00000011130) #17	2510039O18Rik (ENSMSIG00000011176) #18	Nppb (ENSMSIG00000011201) #19	Nppa (ENSMSIG00000011213) #20	Clcn6 (ENSMSIG00000011225) #21	Mthfr (ENSMSIG00000011288) #22	Agtrap (ENSMSIG00000011355) #23	ENSMSIG00000011372 #24	Draxin (ENSMSIG00000011398) #25	Mad2l2 (ENSMSIG00000011418) #26	ENSMSIG00000011464 #27	Fbxo2 (ENSMSIG00000011541) #28	Disp3 (ENSMSIG00000011555) #29	Ubiad1 (ENSMSIG00000011575) #30	Mtor (ENSMSIG00000011592) #31	Angptl7 (ENSMSIG00000011805) #32	Exosc10 (ENSMSIG00000011825) #33	Srm (ENSMSIG00000011893) #34	Masp2 (ENSMSIG00000011900) #35	Tardbp (ENSMSIG00000011917) #36	Gm572 (ENSMSIG00000012030) #37
spretus	MODERN SPECIES	13	AAdacl4fm3 (MGP_SPRETEiJ_G0027769)	Aadacl4fm5 (MGP_SPRETEiJ_G0027770)	Dhrs3 (MGP_SPRETEiJ_G0027771)	Vps13d (MGP_SPRETEiJ_G0027772)	Tnfrsf1b (MGP_SPRETEiJ_G0027773)	Tnfrsf8 (MGP_SPRETEiJ_G0027774)	Zfp933 (MGP_SPRETEiJ_G0027775) #14	Miip (MGP_SPRETEiJ_G0027776) #15	Fv1 (MGP_SPRETEiJ_G0027777)	Mfn2 (MGP_SPRETEiJ_G0027778) #16	Plod1 (MGP_SPRETEiJ_G0027779) #17	2510039O18Rik (MGP_SPRETEiJ_G0027780) #18	Nppb (MGP_SPRETEiJ_G0027781) #19	Nppa (MGP_SPRETEiJ_G0027782) #20	Clcn6 (MGP_SPRETEiJ_G0027783) #21	Mthfr (MGP_SPRETEiJ_G0027784) #22	Agtrap (MGP_SPRETEiJ_G0027785) #23	Draxin (MGP_SPRETEiJ_G0027786) #25	Mad2l2 (MGP_SPRETEiJ_G0027787) #26	Fbxo6 (MGP_SPRETEiJ_G0027788)	Fbxo44 (MGP_SPRETEiJ_G0027789) #27	Fbxo2 (MGP_SPRETEiJ_G0027790) #28	Disp3 (MGP_SPRETEiJ_G0027791) #29	Ubiad1 (MGP_SPRETEiJ_G0027792) #30	Mtor (MGP_SPRETEiJ_G0027793) #31	Angptl7 (MGP_SPRETEiJ_G0027794) #32	Exosc10 (MGP_SPRETEiJ_G0027795) #33	Srm (MGP_SPRETEiJ_G0027796) #34	Masp2 (MGP_SPRETEiJ_G0027797) #35	Tardbp (MGP_SPRETEiJ_G0027798) #36	Gm572 (MGP_SPRETEiJ_G0027799) #37
Mouse	MODERN SPECIES	13	Zfp978 (ENSMUSG00000078497)	Zfp982 (ENSMUSG00000078496)	Zfp985 (ENSMUSG00000065999)	Zfp979 (ENSMUSG00000066000)	Zfp534 (ENSMUSG00000062518)	Zfp984 (ENSMUSG00000078495)	Zfp933 (ENSMUSG00000059423) #14	Miip (ENSMUSG00000029022) #15	Fv1 (ENSMUSG00000070583)	Mfn2 (ENSMUSG00000029020) #16	Plod1 (ENSMUSG00000019055) #17	2510039O18Rik (ENSMUSG00000044496) #18	Nppb (ENSMUSG00000029019) #19	Nppa (ENSMUSG00000041616) #20	Clcn6 (ENSMUSG00000029016) #21	Mthfr (ENSMUSG00000029009) #22	Agtrap (ENSMUSG00000029007) #23	Draxin (ENSMUSG00000029005) #25	Mad2l2 (ENSMUSG00000029003) #26	Fbxo6 (ENSMUSG00000055401)	Fbxo44 (ENSMUSG00000029001) #27	Fbxo2 (ENSMUSG00000041556) #28	Disp3 (ENSMUSG00000041544) #29	Ubiad1 (ENSMUSG00000047719) #30	Mtor (ENSMUSG00000028991) #31	Angptl7 (ENSMUSG00000028989) #32	Exosc10 (ENSMUSG00000017264) #33	Srm (ENSMUSG00000006442) #34	Masp2 (ENSMUSG00000028979) #35	Tardbp (ENSMUSG00000041459) #36	Gm572 (ENSMUSG00000070577) #37
Ryukyu mouse	MODERN SPECIES	13	Aadacl4fm4 (MGP_CAROLIEiJ_G0026776)	AAdacl4fm3 (MGP_CAROLIEiJ_G0026777)	Aadacl4fm5 (MGP_CAROLIEiJ_G0026778)	Dhrs3 (MGP_CAROLIEiJ_G0026779)	Vps13d (MGP_CAROLIEiJ_G0026780)	Tnfrsf1b (MGP_CAROLIEiJ_G0026781)	Tnfrsf8 (MGP_CAROLIEiJ_G0026782)	MGP_CAROLIEiJ_G0026783 ##14	Miip (MGP_CAROLIEiJ_G0026784) #15	Mfn2 (MGP_CAROLIEiJ_G0026785) #16	Plod1 (MGP_CAROLIEiJ_G0026786) #17	2510039O18Rik (MGP_CAROLIEiJ_G0026787) #18	Nppb (MGP_CAROLIEiJ_G0026788) #19	Nppa (MGP_CAROLIEiJ_G0026789) #20	Clcn6 (MGP_CAROLIEiJ_G0026790) #21	Mthfr (MGP_CAROLIEiJ_G0026791) #22	Agtrap (MGP_CAROLIEiJ_G0026792) #23	Draxin (MGP_CAROLIEiJ_G0026793) #25	MGP_CAROLIEiJ_G0026794 #26	Fbxo6 (MGP_CAROLIEiJ_G0026795)	Fbxo44 (MGP_CAROLIEiJ_G0026796) #27	Fbxo2 (MGP_CAROLIEiJ_G0026797) #28	Disp3 (MGP_CAROLIEiJ_G0026798) #29	Ubiad1 (MGP_CAROLIEiJ_G0026799) #30	Mtor (MGP_CAROLIEiJ_G0026800) #31	Angptl7 (MGP_CAROLIEiJ_G0026801) #32	Exosc10 (MGP_CAROLIEiJ_G0026802) #33	Srm (MGP_CAROLIEiJ_G0026803) #34	Masp2 (MGP_CAROLIEiJ_G0026804) #35	Tardbp (MGP_CAROLIEiJ_G0026805) #36	Gm572 (MGP_CAROLIEiJ_G0026806) #37
Shrew mouse	MODERN SPECIES	19	Aadacl4fm4 (MGP_PahariEiJ_G0029124)	AAdacl4fm3 (MGP_PahariEiJ_G0029125)	Aadacl4fm5 (MGP_PahariEiJ_G0029126)	Dhrs3 (MGP_PahariEiJ_G0029127)	Vps13d (MGP_PahariEiJ_G0029128)	Tnfrsf1b (MGP_PahariEiJ_G0029129)	Tnfrsf8 (MGP_PahariEiJ_G0029130)	MGP_PahariEiJ_G0029131 ##14	Miip (MGP_PahariEiJ_G0029132) #15	Mfn2 (MGP_PahariEiJ_G0029133) #16	Plod1 (MGP_PahariEiJ_G0029134) #17	2510039O18Rik (MGP_PahariEiJ_G0029135) #18	Nppb (MGP_PahariEiJ_G0029136) #19	Nppa (MGP_PahariEiJ_G0029137) #20	Clcn6 (MGP_PahariEiJ_G0029138) #21	Mthfr (MGP_PahariEiJ_G0029139) #22	Agtrap (MGP_PahariEiJ_G0029140) #23	Draxin (MGP_PahariEiJ_G0029141) #25	Mad2l2 (MGP_PahariEiJ_G0029142) #26	Fbxo6 (MGP_PahariEiJ_G0029143)	MGP_PahariEiJ_G0029144 #27	Fbxo2 (MGP_PahariEiJ_G0029145) #28	Disp3 (MGP_PahariEiJ_G0029146) #29	Ubiad1 (MGP_PahariEiJ_G0029147) #30	Mtor (MGP_PahariEiJ_G0029148) #31	Angptl7 (MGP_PahariEiJ_G0029149) #32	Exosc10 (MGP_PahariEiJ_G0029150) #33	Srm (MGP_PahariEiJ_G0029151) #34	Masp2 (MGP_PahariEiJ_G0029152) #35	Tardbp (MGP_PahariEiJ_G0029153) #36	Gm572 (MGP_PahariEiJ_G0029154) #37
Rat	MODERN SPECIES	15	Rex2 (ENSRNOG00000062461)	ENSRNOG00000063649	ENSRNOG00000070045	ENSRNOG00000068633	RGD1565622 (ENSRNOG00000033792)	ENSRNOG00000068760	RGD1565622 (ENSRNOG00000062859)	Zfp933 (ENSRNOG00000056374) #14	Miip (ENSRNOG00000024139) #15	Mfn2 (ENSRNOG00000046424) #16	Plod1 (ENSRNOG00000007763) #17	Kiaa2013 (ENSRNOG00000007968) #18	Nppb (ENSRNOG00000008141) #19	Nppa (ENSRNOG00000008176) #20	Clcn6 (ENSRNOG00000008345) #21	Mthfr (ENSRNOG00000008553) #22	Agtrap (ENSRNOG00000008619) #23	Draxin (ENSRNOG00000008911) #25	Rpl35a (ENSRNOG00000031641)	Mad2l2 (ENSRNOG00000009134) #26	Fbxo6 (ENSRNOG00000009217)	Fbxo44 (ENSRNOG00000009298) #27	Fbxo2 (ENSRNOG00000009409) #28	Disp3 (ENSRNOG00000026447) #29	Ubiad1 (ENSRNOG00000009575) #30	Mtor (ENSRNOG00000009615) #31	Angptl7 (ENSRNOG00000009589) #32	Exosc10 (ENSRNOG00000010719) #33	Srm (ENSRNOG00000011078) #34	Masp2 (ENSRNOG00000011258) #35	Tardbp (ENSRNOG00000012455) #36