Bovidae	ANCESTRAL SPECIES	28	ENSGT00940000155402.a.b	ENSGT01030000234626.D #7	ENSGT00940000159394 #8	ENSGT00950000183010.a.b.a.b.b.b #9	ENSGT00390000018741 #10	ENSGT00390000008772 #12	ENSGT00940000159872 #13	ENSGT00940000153432.A.b #14	ENSGT00940000159814 #15	ENSGT00940000153499.a #16	ENSGT00940000160474 #17	ENSGT00510000047648 #18	ENSGT00940000155805 #19	ENSGT00390000002428.a.g.b #20	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846.ab #28	ENSGT00940000158788 #29	ENSGT00950000183198.c.b.a.u #30	ENSGT00390000007354 #31	ENSGT01080000257333.E.o.a #32	ENSGT00390000018729.a.a #33	ENSGT00390000018729.a.b #34	ENSGT00940000158784 #35	ENSGT01030000234510.a.a.b #37	ENSGT01030000234510.a.a.a.a.a.a ##37
Caprinae	DUPLICATION
Caprinae	ANCESTRAL SPECIES	25	ENSGT00940000155402.a.b	ENSGT01030000234626.D #7	ENSGT00940000159394 #8	ENSGT00950000183010.a.b.a.b.b.b #9	ENSGT00390000018741 #10	ENSGT00390000008772 #12	ENSGT00940000159872 #13	ENSGT00940000153432.A.b #14	ENSGT00940000159814 #15	ENSGT00940000153499.a #16	ENSGT00940000160474 #17	ENSGT00510000047648 #18	ENSGT00940000155805 #19	ENSGT00390000002428.a.g.b #20	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b.m #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846.ab.a #28	ENSGT00940000158788 #29	ENSGT00950000183198.c.b.a.u #30	ENSGT00390000007354 #31	ENSGT01080000257333.E.o.a #32	ENSGT00390000018729.a.a #33	ENSGT00390000018729.a.b #34	ENSGT00940000158784 #35	ENSGT01030000234510.a.a.b #37	ENSGT01030000234510.a.a.a.a.a.a ##37
Rambouillet Sheep	MODERN SPECIES	15	ACAA2 (ENSOARG00020011796) #7	LIPG (ENSOARG00020011622) #8	RPL17 (ENSOARG00020011339) #9	C18orf32 (ENSOARG00020011289) #10	ENSOARG00020011257 #11	DYM (ENSOARG00020011069) #12	SMAD7 (ENSOARG00020010974) #13	CTIF (ENSOARG00020010822) #14	ZBTB7C (ENSOARG00020010706) #15	SMAD2 (ENSOARG00020010458) #16	SKOR2 (ENSOARG00020010308) #17	IER3IP1 (ENSOARG00020010237) #18	HDHD2 (ENSOARG00020010165) #19	ENSOARG00020010055 #20	KATNAL2 (ENSOARG00020009912) #21	PIAS2 (ENSOARG00020009642) #22	ST8SIA5 (ENSOARG00020009312) #23	LOXHD1 (ENSOARG00020006581) #24	RNF165 (ENSOARG00020006346) #25	C18orf25 (ENSOARG00020025062) #26	HAUS1 (ENSOARG00020025030) #27	ATP5F1A (ENSOARG00020025008) #28	PSTPIP2 (ENSOARG00020024936) #29	ENSOARG00020024920 #30	EPG5 (ENSOARG00020024844) #31	SIGLEC15 (ENSOARG00020024818) #32	SLC14A1 (ENSOARG00020024788) #33	SLC14A2 (ENSOARG00020024734) #34	SETBP1 (ENSOARG00020024713) #35	ENSOARG00020024696 #36	MC2R (ENSOARG00020024677) #37
Goat	MODERN SPECIES	16	ACAA2 (ENSCHIG00000024466) #7	ENSCHIG00000003894	LIPG (ENSCHIG00000015994) #8	ENSCHIG00000011677 ##9	C18orf32 (ENSCHIG00000021354) #10	ENSCHIG00000004940	DYM (ENSCHIG00000001838) #12	SMAD7 (ENSCHIG00000019461) #13	CTIF (ENSCHIG00000014455) #14	ZBTB7C (ENSCHIG00000001635) #15	SMAD2 (ENSCHIG00000020206) #16	SKOR2 (ENSCHIG00000011642) #17	IER3IP1 (ENSCHIG00000020552) #18	HDHD2 (ENSCHIG00000015973) #19	KATNAL2 (ENSCHIG00000021217) #21	ENSCHIG00000014561 #22	ST8SIA5 (ENSCHIG00000021775) #23	LOXHD1 (ENSCHIG00000019780) #24	RNF165 (ENSCHIG00000009622) #25	C18orf25 (ENSCHIG00000014294) #26	HAUS1 (ENSCHIG00000027208) #27	ENSCHIG00000014708 #28	PSTPIP2 (ENSCHIG00000019291) #29	EPG5 (ENSCHIG00000003358) #31	SIGLEC15 (ENSCHIG00000008764) #32	SLC14A1 (ENSCHIG00000006085) #33	SLC14A2 (ENSCHIG00000023270) #34	SETBP1 (ENSCHIG00000014366) #35	MC2R (ENSCHIG00000006175) #37	MC5R (ENSCHIG00000019609) ##37	RNMT (ENSCHIG00000000428)
Caprinae	ANCESTRAL SPECIES																	ENSGT01030000234539.a.a.b.b.n ##22
Goat	MODERN SPECIES	13	LCMT2 (ENSCHIG00000004003)	TGM7 (ENSCHIG00000018370)	TGM5 (ENSCHIG00000015160)	MIS18BP1 (ENSCHIG00000023697)	FANCM (ENSCHIG00000015176)	FKBP3 (ENSCHIG00000018893)	PRPF39 (ENSCHIG00000010118)	TOGARAM1 (ENSCHIG00000015767)	KLHL28 (ENSCHIG00000023507)	C14orf28 (ENSCHIG00000008954)	ENSCHIG00000012257	ENSCHIG00000017232	ENSCHIG00000016320	ENSCHIG00000014697	ENSCHIG00000007447	ENSCHIG00000025383 ##22	LRFN5 (ENSCHIG00000008107)	ENSCHIG00000016309	ENSCHIG00000018649	FBXO33 (ENSCHIG00000018083)	ENSCHIG00000010530	PNN (ENSCHIG00000016458)	TRAPPC6B (ENSCHIG00000009203)	GEMIN2 (ENSCHIG00000009881)	SEC23A (ENSCHIG00000026578)	CLEC14A (ENSCHIG00000008637)	SSTR1 (ENSCHIG00000006157)	ENSCHIG00000013240	FOXA1 (ENSCHIG00000023519)	MIPOL1 (ENSCHIG00000011846)	SLC25A21 (ENSCHIG00000017403)
Bovinae	ANCESTRAL SPECIES	28	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D #7	ENSGT00940000159394 #8	ENSGT00950000183010.a.b.a.b.b.b #9	ENSGT00390000018741.i.b #10	ENSGT00390000008772 #12	ENSGT00940000159872 #13	ENSGT00940000153432.A.b #14	ENSGT00940000159814 #15	ENSGT00940000153499.a #16	ENSGT00940000160474 #17	ENSGT00510000047648 #18	ENSGT00940000155805 #19	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846.ab #28	ENSGT00940000158788 #29	ENSGT00950000183198.c.b.a.u #30	ENSGT00390000007354 #31	ENSGT01080000257333.E.o.a #32	ENSGT00390000018729.a.a #33	ENSGT00390000018729.a.b #34	ENSGT00940000158784 #35	ENSGT01030000235502	ENSGT01030000234510.a.a.b #37
Bos	ANCESTRAL SPECIES	29	ENSGT01030000234626.D #7	ENSGT00940000159394 #8	ENSGT00950000183010.a.b.a.b.b.b #9	ENSGT00390000018741.j #10	ENSGT00950000183010.a.b.a.b.a ##9	ENSGT00390000018741.i.b #10	ENSGT00390000008772 #12	ENSGT00940000159872 #13	ENSGT00940000153432.A.b #14	ENSGT00940000159814 #15	ENSGT00940000153499.a #16	ENSGT00940000160474 #17	ENSGT00510000047648 #18	ENSGT00940000155805 #19	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846.ab #28	ENSGT00940000158788 #29	ENSGT00950000183198.c.b.a.u #30	ENSGT00390000007354 #31	ENSGT01080000257333.E.o.a #32	ENSGT00390000018729.a.a #33	ENSGT00390000018729.a.b #34	ENSGT00940000158784 #35	ENSGT00390000010047.b.kb	ENSGT01030000235502
Bos_a	ANCESTRAL SPECIES	28	ENSGT00950000183005.a.a	ENSGT00940000155402.a.b	ENSGT01030000234626.D #7	ENSGT00940000159394 #8	ENSGT00950000183010.a.b.a.b.b.b #9	ENSGT00390000018741.j #10	ENSGT00390000008772 #12	ENSGT00940000159872 #13	ENSGT00940000153432.A.b #14	ENSGT00940000159814 #15	ENSGT00940000153499.a #16	ENSGT00940000160474 #17	ENSGT00510000047648 #18	ENSGT00940000155805 #19	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846.ab #28	ENSGT00940000158788 #29	ENSGT00950000183198.c.b.a.u #30	ENSGT00390000007354 #31	ENSGT01080000257333.E.o.a #32	ENSGT00390000018729.a.a #33	ENSGT00390000018729.a.b #34	ENSGT00940000158784 #35	ENSGT00390000010047.b.kb	ENSGT01030000235502
Domestic yak	MODERN SPECIES	13	ACAA2 (ENSBGRG00000023212) #7	LIPG (ENSBGRG00000023098) #8	ENSBGRG00000022965 #9	ENSBGRG00000022927 #10	DYM (ENSBGRG00000022704) #12	SMAD7 (ENSBGRG00000022643) #13	ENSBGRG00000022591	CTIF (ENSBGRG00000022473) #14	ZBTB7C (ENSBGRG00000022372) #15	SMAD2 (ENSBGRG00000022238) #16	ENSBGRG00000022203 #17	IER3IP1 (ENSBGRG00000022154) #18	HDHD2 (ENSBGRG00000022037) #19	KATNAL2 (ENSBGRG00000021942) #21	ENSBGRG00000021911	PIAS2 (ENSBGRG00000021507) #22	ST8SIA5 (ENSBGRG00000021274) #23	LOXHD1 (ENSBGRG00000019547) #24	RNF165 (ENSBGRG00000019400) #25	C18orf25 (ENSBGRG00000019304) #26	HAUS1 (ENSBGRG00000019042) #27	ATP5F1A (ENSBGRG00000018791) #28	PSTPIP2 (ENSBGRG00000018564) #29	EPG5 (ENSBGRG00000018124) #31	SIGLEC15 (ENSBGRG00000018017) #32	SLC14A1 (ENSBGRG00000017647) #33	SLC14A2 (ENSBGRG00000017535) #34	SETBP1 (ENSBGRG00000017294) #35	ENSBGRG00000017233 #35	ENSBGRG00000017170	MC2R (ENSBGRG00000017129) #37
Wild yak	MODERN SPECIES	2191												ENSBMUG00000012703 #17	IER3IP1 (ENSBMUG00000012714) #18	HDHD2 (ENSBMUG00000012729) #19	KATNAL2 (ENSBMUG00000012760) #21	PIAS2 (ENSBMUG00000012834) #22	ST8SIA5 (ENSBMUG00000012907) #23
Bos_b	ANCESTRAL SPECIES	34	ENSGT00950000183005.a.a	ENSGT00940000155402.a.b	ENSGT01030000234626.D #7	ENSGT00940000159394 #8	ENSGT00950000183010.a.b.a.b.a ##9	ENSGT00390000018741.i.b #10	ENSGT00390000008772 #12	ENSGT00940000159872 #13	ENSGT00940000153432.A.b #14	ENSGT00940000159814 #15	ENSGT00940000153499.a #16	ENSGT00940000160474 #17	ENSGT00510000047648 #18	ENSGT00940000155805 #19	ENSGT00940000157302 #21	ENSGT01030000234539.a.a.b.b #22	ENSGT01030000234535.C #23	ENSGT00390000018830 #24	ENSGT00940000156997 #25	ENSGT00390000016167 #26	ENSGT00390000006029 #27	ENSGT00550000074846.ab #28	ENSGT00940000158788 #29	ENSGT00390000007354 #31	ENSGT01080000257333.E.o.a #32	ENSGT00390000018729.a.a #33	ENSGT00390000018729.a.b #34	ENSGT00940000158784 #35	ENSGT00390000010047.b.kb	ENSGT01030000235502	ENSGT01030000234510.a.a.b #37
Cow	MODERN SPECIES	16	MYO5B (ENSBTAG00000019455)	ACAA2 (ENSBTAG00000002863) #7	LIPG (ENSBTAG00000048916) #8	RPL17 (ENSBTAG00000022902) ##9	C24H18orf32 (ENSBTAG00000021334) #10	DYM (ENSBTAG00000000024) #12	SMAD7 (ENSBTAG00000012441) #13	CTIF (ENSBTAG00000018901) #14	ZBTB7C (ENSBTAG00000013306) #15	SMAD2 (ENSBTAG00000039916) #16	SKOR2 (ENSBTAG00000032962) #17	IER3IP1 (ENSBTAG00000032961) #18	HDHD2 (ENSBTAG00000011893) #19	KATNAL2 (ENSBTAG00000019331) #21	ENSBTAG00000047547	PIAS2 (ENSBTAG00000007833) #22	ST8SIA5 (ENSBTAG00000001770) #23	LOXHD1 (ENSBTAG00000015210) #24	ENSBTAG00000048422	RNF165 (ENSBTAG00000001128) #25	C24H18orf25 (ENSBTAG00000032964) #26	HAUS1 (ENSBTAG00000002512) #27	ATP5F1A (ENSBTAG00000002507) #28	PSTPIP2 (ENSBTAG00000002624) #29	EPG5 (ENSBTAG00000012067) #31	SIGLEC15 (ENSBTAG00000016620) #32	SLC14A1 (ENSBTAG00000019870) #33	SLC14A2 (ENSBTAG00000002099) #34	SETBP1 (ENSBTAG00000018088) #35	ENSBTAG00000046153	ENSBTAG00000048673
Hybrid Bos Indicus	MODERN SPECIES	16	ACAA2 (ENSBIXG00005026872) #7	LIPG (ENSBIXG00005004622) #8	ENSBIXG00005007771 ##9	ENSBIXG00005027155 #10	DYM (ENSBIXG00005027220) #12	SMAD7 (ENSBIXG00005004711) #13	CTIF (ENSBIXG00005007777) #14	ZBTB7C (ENSBIXG00005027504) #15	SMAD2 (ENSBIXG00005027591) #16	SKOR2 (ENSBIXG00005004756) #17	IER3IP1 (ENSBIXG00005027693) #18	ENSBIXG00005027700	HDHD2 (ENSBIXG00005027742) #19	KATNAL2 (ENSBIXG00005004778) #21	ENSBIXG00005006537	PIAS2 (ENSBIXG00005027955) #22	ST8SIA5 (ENSBIXG00005028065) #23	LOXHD1 (ENSBIXG00005028849) #24	ENSBIXG00005005062	RNF165 (ENSBIXG00005002180) #25	C18orf25 (ENSBIXG00005002109) #26	ENSBIXG00005005126 #27	ATP5F1A (ENSBIXG00005002010) #28	PSTPIP2 (ENSBIXG00005029098) #29	EPG5 (ENSBIXG00005005178) #31	SIGLEC15 (ENSBIXG00005029135) #32	SLC14A1 (ENSBIXG00005001781) #33	SLC14A2 (ENSBIXG00005029181) #34	SETBP1 (ENSBIXG00005029205) #35	ENSBIXG00005029232	MC2R (ENSBIXG00005006098) #37
American bison	MODERN SPECIES	3076						DYM (ENSBBBG00000010404) #12	SMAD7 (ENSBBBG00000010410) #13	CTIF (ENSBBBG00000010421) #14	ENSBBBG00000010424	ZBTB7C (ENSBBBG00000010443) #15	SMAD2 (ENSBBBG00000010465) #16	SKOR2 (ENSBBBG00000010476) #17	IER3IP1 (ENSBBBG00000010485) #18	HDHD2 (ENSBBBG00000010488) #19	KATNAL2 (ENSBBBG00000010508) #21	PIAS2 (ENSBBBG00000010545) #22