Bovidae	ANCESTRAL SPECIES	5	ENSGT00940000158687 #9	ENSGT00940000158427 #10	ENSGT00940000155605 #11	ENSGT00390000004700.b #12	ENSGT00940000153417.B #13	ENSGT00390000004923.B #14	ENSGT00700000104587 #15	ENSGT00940000158595 #16	ENSGT01050000245042 #17	ENSGT00950000183172.C #18	ENSGT00390000005572 #19	ENSGT00940000155320 #20	ENSGT00390000010130.e.a.b #21	ENSGT00390000010130.e.a.a ##21	ENSGT00390000005743 #23	ENSGT00390000004208 #22	ENSGT00940000158876 #24	ENSGT00530000063883 #25	ENSGT00940000154644 #26	ENSGT00940000154524.b #27	ENSGT00940000154239.b #28	ENSGT00390000004254 #29	ENSGT00940000156217 #30	ENSGT00390000002768 #31	ENSGT00940000157706 #32	ENSGT00940000159280 #33	ENSGT00940000154800.cb #35	ENSGT00390000009189 #36	ENSGT00950000182836.a #37	ENSGT00940000160921	ENSGT00940000158182
Caprinae	ANCESTRAL SPECIES	9	ENSGT00940000158687 #9	ENSGT00940000158427 #10	ENSGT00940000155605 #11	ENSGT00390000004700.b #12	ENSGT00940000153417.B #13	ENSGT00390000004923.B #14	ENSGT00700000104587 #15	ENSGT00940000158595 #16	ENSGT01050000245042 #17	ENSGT00950000183172.C #18	ENSGT00390000005572 #19	ENSGT00940000155320 #20	ENSGT01060000248694	ENSGT00390000005743 #23	ENSGT00390000010130.e.a.b #21	ENSGT00390000004208 #22	ENSGT00940000158876 #24	ENSGT00530000063883 #25	ENSGT00940000154644 #26	ENSGT00940000154524.b #27	ENSGT00940000154239.b #28	ENSGT00390000004254 #29	ENSGT00940000156217 #30	ENSGT00390000002768 #31	ENSGT00940000157706 #32	ENSGT00940000159280 #33	ENSGT00940000154800.cb #35	ENSGT00390000009189 #36	ENSGT00950000182836.a #37	ENSGT00940000160921	ENSGT00940000158182
Rambouillet Sheep	MODERN SPECIES	19	EIF2B4 (ENSOARG00020001974) #7	SNX17 (ENSOARG00020002085) #8	ZNF513 (ENSOARG00020002140) #9	PPM1G (ENSOARG00020002166) #10	NRBP1 (ENSOARG00020002193) #11	KRTCAP3 (ENSOARG00020002219) #12	IFT172 (ENSOARG00020002253) #13	FNDC4 (ENSOARG00020002344) #14	ENSOARG00020002363 #15	ZNF512 (ENSOARG00020002439) #16	ENSOARG00020003689 #17	GPN1 (ENSOARG00020003745) #18	SUPT7L (ENSOARG00020004068) #19	SLC4A1AP (ENSOARG00020004159) #20	MRPL33 (ENSOARG00020004233) #21	BABAM2 (ENSOARG00020004260) #22	RBKS (ENSOARG00020004294) #23	FOSL2 (ENSOARG00020004345) #24	PLB1 (ENSOARG00020004381) #25	PPP1CB (ENSOARG00020004810) #26	SPDYA (ENSOARG00020004844) #27	TRMT61B (ENSOARG00020004873) #28	WDR43 (ENSOARG00020004922) #29	TOGARAM2 (ENSOARG00020005046) #30	PCARE (ENSOARG00020005115) #31	CLIP4 (ENSOARG00020005146) #32	ALK (ENSOARG00020005205) #33	ENSOARG00020005335 #34	ENSOARG00020005347 #35	LBH (ENSOARG00020005366) #36	LCLAT1 (ENSOARG00020005419) #37
Goat	MODERN SPECIES	2	SNX17 (ENSCHIG00000012311) #8	ZNF513 (ENSCHIG00000017988) #9	PPM1G (ENSCHIG00000003759) #10	NRBP1 (ENSCHIG00000025757) #11	KRTCAP3 (ENSCHIG00000026266) #12	IFT172 (ENSCHIG00000013288) #13	FNDC4 (ENSCHIG00000010827) #14	ENSCHIG00000007406 #16	ENSCHIG00000023039 #17	ENSCHIG00000024231 #18	SUPT7L (ENSCHIG00000009667) #19	SLC4A1AP (ENSCHIG00000013579) #20	ENSCHIG00000019202	RBKS (ENSCHIG00000013719) #23	ENSCHIG00000022079	BABAM2 (ENSCHIG00000003249) #22	FOSL2 (ENSCHIG00000010332) #24	PLB1 (ENSCHIG00000021817) #25	PPP1CB (ENSCHIG00000013802) #26	SPDYA (ENSCHIG00000023911) #27	TRMT61B (ENSCHIG00000009342) #28	ENSCHIG00000019801	WDR43 (ENSCHIG00000006001) #29	TOGARAM2 (ENSCHIG00000022894) #30	PCARE (ENSCHIG00000011537) #31	CLIP4 (ENSCHIG00000023265) #32	ALK (ENSCHIG00000008213) #33	ENSCHIG00000025063 #35	LBH (ENSCHIG00000013245) #36	LCLAT1 (ENSCHIG00000022812) #37	ENSCHIG00000023098
Bovinae	ANCESTRAL SPECIES	4	ENSGT00940000158687 #9	ENSGT00940000158427 #10	ENSGT00940000155605 #11	ENSGT00390000004700.b #12	ENSGT00940000153417.B #13	ENSGT00390000004923.B #14	ENSGT00700000104587 #15	ENSGT00940000158595 #16	ENSGT01050000245042 #17	ENSGT00950000183172.C #18	ENSGT00390000005572 #19	ENSGT00940000155320.p.a #20	ENSGT00390000010130.e.a.b #21	ENSGT00390000010130.e.a.a ##21	ENSGT00390000005743 #23	ENSGT00390000004208 #22	ENSGT00940000158876 #24	ENSGT00530000063883 #25	ENSGT00940000154644 #26	ENSGT00940000154524.b #27	ENSGT00940000154239.b #28	ENSGT00390000004254 #29	ENSGT00940000156217 #30	ENSGT00390000002768 #31	ENSGT00940000157706 #32	ENSGT00940000159280 #33	ENSGT00940000154800.cb #35	ENSGT00390000009189 #36	ENSGT00950000182836.a #37	ENSGT00940000160921	ENSGT00940000158182
Bos	ANCESTRAL SPECIES	5	ENSGT00940000158687 #9	ENSGT00940000158427 #10	ENSGT00940000155605 #11	ENSGT00390000004700.b #12	ENSGT00940000153417.B #13	ENSGT00390000004923.B #14	ENSGT00700000104587 #15	ENSGT01100000263480.a.a.b.b.b.a.b.b.b.a.b.b.b.a.b	ENSGT00940000158595 #16	ENSGT01050000245042 #17	ENSGT00950000183172.C #18	ENSGT00390000005572 #19	ENSGT00940000155320.p.a #20	ENSGT00390000010130.e.a.b #21	ENSGT00390000005743 #23	ENSGT00390000004208 #22	ENSGT00940000158876 #24	ENSGT01100000263481.n.a.a.a.b.a.a.a.a.a.a.b.a.b.a	ENSGT00530000063883 #25	ENSGT00940000154644 #26	ENSGT00940000154524.b #27	ENSGT00940000154239.b #28	ENSGT00390000004254 #29	ENSGT00940000156217 #30	ENSGT00390000002768 #31	ENSGT00940000157706 #32	ENSGT00940000159280 #33	ENSGT00940000154800.cb #35	ENSGT00390000009189 #36	ENSGT00950000182836.a #37	ENSGT00940000160921
Bos_a	ANCESTRAL SPECIES	6	ENSGT00940000158687 #9	ENSGT00940000158427 #10	ENSGT00940000155605 #11	ENSGT00390000004700.b #12	ENSGT00940000153417.B #13	ENSGT00390000004923.B #14	ENSGT00700000104587 #15	ENSGT01100000263480.a.a.b.b.b.a.b.b.b.a.b.b.b.a.b	ENSGT00940000158595 #16	ENSGT01050000245042 #17	ENSGT00950000183172.C #18	ENSGT00390000005572 #19	ENSGT00940000155320.p.a #20	ENSGT00390000010130.e.a.b #21	ENSGT00390000005743 #23	ENSGT00390000004208 #22	ENSGT00940000158876 #24	ENSGT01100000263481.n.a.a.a.b.a.a.a.a.a.a.b.a.b.a	ENSGT00530000063883 #25	ENSGT00940000154644 #26	ENSGT00940000154524.b #27	ENSGT00940000154239.b #28	ENSGT00390000004254 #29	ENSGT00940000156217 #30	ENSGT00390000002768 #31	ENSGT00940000157706 #32	ENSGT00940000159280 #33	ENSGT00940000154800.cb #35	ENSGT00390000009189 #36	ENSGT00950000182836.a #37	ENSGT00940000160921
Wild yak	MODERN SPECIES	1575														ENSBMUG00000012959 ##21	RBKS (ENSBMUG00000012928) #23	BABAM2 (ENSBMUG00000012891) #22	FOSL2 (ENSBMUG00000012856) #24	PLB1 (ENSBMUG00000012838) #25	PPP1CB (ENSBMUG00000012745) #26	SPDYA (ENSBMUG00000012733) #27	TRMT61B (ENSBMUG00000012719) #28	WDR43 (ENSBMUG00000012665) #29	TOGARAM2 (ENSBMUG00000012613) #30	PCARE (ENSBMUG00000012593) #31	CLIP4 (ENSBMUG00000012577) #32	ENSBMUG00000012512 #33
Domestic yak	MODERN SPECIES	28	SNX17 (ENSBGRG00000009204) #8	ZNF513 (ENSBGRG00000009127) #9	PPM1G (ENSBGRG00000009087) #10	NRBP1 (ENSBGRG00000008864) #11	KRTCAP3 (ENSBGRG00000008816) #12	IFT172 (ENSBGRG00000008207) #13	FNDC4 (ENSBGRG00000008117) #14	ENSBGRG00000008078 #15	ENSBGRG00000008068	ZNF512 (ENSBGRG00000007504) #16	ENSBGRG00000007462 #17	GPN1 (ENSBGRG00000007243) #18	SUPT7L (ENSBGRG00000007114) #19	ENSBGRG00000006925 #20	RBKS (ENSBGRG00000006893) #23	BABAM2 (ENSBGRG00000006821) #22	FOSL2 (ENSBGRG00000006787) #24	ENSBGRG00000006764	PLB1 (ENSBGRG00000006662) #25	PPP1CB (ENSBGRG00000006570) #26	SPDYA (ENSBGRG00000006545) #27	TRMT61B (ENSBGRG00000006496) #28	WDR43 (ENSBGRG00000006425) #29	TOGARAM2 (ENSBGRG00000006395) #30	PCARE (ENSBGRG00000006348) #31	CLIP4 (ENSBGRG00000006303) #32	ENSBGRG00000006260 #33	YPEL5 (ENSBGRG00000006202) #35	ENSBGRG00000006190	LBH (ENSBGRG00000006136) #36	ENSBGRG00000006120
Bos_b	ANCESTRAL SPECIES	16	ENSGT00940000158687 #9	ENSGT00940000158427 #10	ENSGT00940000155605 #11	ENSGT00390000004700.b #12	ENSGT00940000153417.B #13	ENSGT00390000004923.B #14	ENSGT00700000104587 #15	ENSGT01100000263480.a.a.b.b.b.a.b.b.b.a.b.b.b.a.b	ENSGT00940000158595 #16	ENSGT01050000245042 #17	ENSGT00950000183172.C #18	ENSGT00390000005572 #19	ENSGT00940000155320.p.a #20	ENSGT00390000010130.e.a.b #21	ENSGT00390000005743 #23	ENSGT00390000004208 #22	ENSGT00940000158876 #24	ENSGT01100000263481.n.a.a.a.b.a.a.a.a.a.a.b.a.b.a	ENSGT00530000063883 #25	ENSGT00940000154644 #26	ENSGT00940000154524.b #27	ENSGT00940000154239.b #28	ENSGT00390000004254 #29	ENSGT00940000156217 #30	ENSGT00390000002768 #31	ENSGT00940000157706 #32	ENSGT00940000159280 #33	ENSGT00940000154800.cb #35	ENSGT00390000009189 #36	ENSGT00950000182836.a #37	ENSGT00940000160921
Hybrid Bos Indicus	MODERN SPECIES	2	ZNF513 (ENSBIXG00005001644) #9	PPM1G (ENSBIXG00005030161) #10	NRBP1 (ENSBIXG00005030132) #11	KRTCAP3 (ENSBIXG00005030111) #12	IFT172 (ENSBIXG00005030081) #13	FNDC4 (ENSBIXG00005030044) #14	ENSBIXG00005030025 #15	ENSBIXG00005030018	ZNF512 (ENSBIXG00005029986) #16	ENSBIXG00005029965 #17	GPN1 (ENSBIXG00005029929) #18	SUPT7L (ENSBIXG00005029908) #19	ENSBIXG00005029897 #20	ENSBIXG00005029888 #21	RBKS (ENSBIXG00005029878) #23	BABAM2 (ENSBIXG00005029855) #22	FOSL2 (ENSBIXG00005029836) #24	ENSBIXG00005029832	PLB1 (ENSBIXG00005029815) #25	PPP1CB (ENSBIXG00005029781) #26	SPDYA (ENSBIXG00005029771) #27	TRMT61B (ENSBIXG00005029755) #28	WDR43 (ENSBIXG00005029729) #29	TOGARAM2 (ENSBIXG00005029715) #30	PCARE (ENSBIXG00005029701) #31	CLIP4 (ENSBIXG00005029652) #32	ALK (ENSBIXG00005029592) #33	ENSBIXG00005029545 #35	LBH (ENSBIXG00005029529) #36	LCLAT1 (ENSBIXG00005029510) #37	CAPN13 (ENSBIXG00005029485)
Cow	MODERN SPECIES	2	ZNF513 (ENSBTAG00000019518) #9	PPM1G (ENSBTAG00000019522) #10	NRBP1 (ENSBTAG00000018153) #11	KRTCAP3 (ENSBTAG00000018156) #12	IFT172 (ENSBTAG00000018157) #13	ENSBTAG00000052307 #13	FNDC4 (ENSBTAG00000018164) #14	C11H2orf16 (ENSBTAG00000046280) #15	ZNF512 (ENSBTAG00000003902) #16	ENSBTAG00000049389 #17	GPN1 (ENSBTAG00000003904) #18	SUPT7L (ENSBTAG00000003906) #19	ENSBTAG00000018680 #20	MRPL33 (ENSBTAG00000055077) ##21	RBKS (ENSBTAG00000031332) #23	BABAM2 (ENSBTAG00000031335) #22	FOSL2 (ENSBTAG00000023929) #24	ENSBTAG00000048347	PLB1 (ENSBTAG00000018669) #25	PPP1CB (ENSBTAG00000012447) #26	SPDYA (ENSBTAG00000031347) #27	TRMT61B (ENSBTAG00000053233) #28	WDR43 (ENSBTAG00000018196) #29	TOGARAM2 (ENSBTAG00000044021) #30	PCARE (ENSBTAG00000016934) #31	CLIP4 (ENSBTAG00000007378) #32	ALK (ENSBTAG00000007379) #33	YPEL5 (ENSBTAG00000023744) #35	LBH (ENSBTAG00000026111) #36	LCLAT1 (ENSBTAG00000054158) #37	CAPN13 (ENSBTAG00000008946)
American bison	MODERN SPECIES	3068	SNX17 (ENSBBBG00000015622) #8	ZNF513 (ENSBBBG00000015617) #9	PPM1G (ENSBBBG00000015604) #10	NRBP1 (ENSBBBG00000015557) #11	KRTCAP3 (ENSBBBG00000015478) #12	IFT172 (ENSBBBG00000015451) #13	FNDC4 (ENSBBBG00000003837) #14	ENSBBBG00000015374 #15	ZNF512 (ENSBBBG00000015367) #16	ENSBBBG00000001272 #17	GPN1 (ENSBBBG00000001282) #18	SUPT7L (ENSBBBG00000015307) #19	ENSBBBG00000015270 #20	ENSBBBG00000015237 ##21	RBKS (ENSBBBG00000015224) #23	BABAM2 (ENSBBBG00000015209) #22	FOSL2 (ENSBBBG00000015167) #24	PLB1 (ENSBBBG00000002774) #25	PPP1CB (ENSBBBG00000003704) #26	SPDYA (ENSBBBG00000000877) #27	TRMT61B (ENSBBBG00000000888) #28	WDR43 (ENSBBBG00000000902) #29	TOGARAM2 (ENSBBBG00000000947) #30	PCARE (ENSBBBG00000000986) #31	CLIP4 (ENSBBBG00000000999) #32	ALK (ENSBBBG00000001065) #33