Rodentia_A	ANCESTRAL SPECIES	14	ENSGT00940000158687	ENSGT00940000158427	ENSGT00940000155605 #7	ENSGT00390000004700.b #8	ENSGT00940000153417.B #9	ENSGT00390000004923.B #10	ENSGT00390000005345 #11	ENSGT00700000104587 #12	ENSGT00940000158595 #13	ENSGT00950000183172.C	ENSGT00390000005572 #16	ENSGT00910000148728 #17	ENSGT00940000155320 #18	ENSGT00390000010130 #20	ENSGT00390000005743 #21	ENSGT00390000004208 #22	ENSGT00940000158876 #23	ENSGT00530000063883 #24	ENSGT00940000154644.n #25	ENSGT00940000154524.b #26	ENSGT00940000154239.b #27	ENSGT00390000004254 #28	ENSGT00940000156217 #29	ENSGT00390000002768 #30	ENSGT00940000157706 #31	ENSGT00940000159280 #32	ENSGT00940000154800.ab #33	ENSGT00390000009189 #34	ENSGT00860000135288 #35	ENSGT00950000182836.a #36	ENSGT00940000160921 #37
Sciuridae	ANCESTRAL SPECIES	16	ENSGT00940000158427	ENSGT00940000155605 #7	ENSGT00390000004700.b #8	ENSGT00940000153417.B #9	ENSGT00390000004923.B #10	ENSGT00390000005345 #11	ENSGT00700000104587 #12	ENSGT00940000158595 #13	ENSGT01000000214622 #14	ENSGT00950000183172.C	ENSGT00390000005572 #16	ENSGT00910000148728 #17	ENSGT00940000155320 #18	ENSGT00390000010130 #20	ENSGT00390000005743 #21	ENSGT00390000004208 #22	ENSGT00940000158876 #23	ENSGT00530000063883 #24	ENSGT00940000154644.n #25	ENSGT00940000154524.b #26	ENSGT00940000154239.b #27	ENSGT00390000004254 #28	ENSGT00940000156217 #29	ENSGT00390000002768 #30	ENSGT00940000157706 #31	ENSGT00940000159280 #32	ENSGT00940000154800.ab #33	ENSGT00390000009189 #34	ENSGT00860000135288 #35	ENSGT00950000182836.a #36	ENSGT00940000160921 #37
Marmotini	ANCESTRAL SPECIES	14	ENSGT00940000158427	ENSGT00940000155605 #7	ENSGT00390000004700.b #8	ENSGT00940000153417.B #9	ENSGT00390000004923.B #10	ENSGT00390000005345 #11	ENSGT00700000104587 #12	ENSGT00940000158595 #13	ENSGT01000000214622 #14	ENSGT00950000183172.C.j.a	ENSGT00390000005572 #16	ENSGT00910000148728 #17	ENSGT00940000155320 #18	ENSGT00390000010130 #20	ENSGT00390000005743 #21	ENSGT00390000004208 #22	ENSGT00940000158876 #23	ENSGT00530000063883 #24	ENSGT00940000154644.n.g.a #25	ENSGT00940000154524.b #26	ENSGT00940000154239.b #27	ENSGT00390000004254 #28	ENSGT00940000156217 #29	ENSGT00390000002768 #30	ENSGT00940000157706 #31	ENSGT00940000159280 #32	ENSGT00940000154800.ab.a.a #33	ENSGT00390000009189 #34	ENSGT00860000135288 #35	ENSGT00950000182836.a #36	ENSGT00940000160921.a #37
Marmotini_b	ANCESTRAL SPECIES	17	ENSGT00940000158427	ENSGT00940000155605 #7	ENSGT00390000004700.b #8	ENSGT00940000153417.B #9	ENSGT00390000004923.B #10	ENSGT00390000005345 #11	ENSGT00700000104587 #12	ENSGT00940000158595 #13	ENSGT01000000214622 #14	ENSGT00950000183172.C.j.a	ENSGT00390000005572 #16	ENSGT00910000148728 #17	ENSGT00940000155320 #18	ENSGT00390000010130 #20	ENSGT00390000005743 #21	ENSGT00390000004208 #22	ENSGT00940000158876 #23	ENSGT00530000063883 #24	ENSGT00940000154644.n.g.a #25	ENSGT00940000154524.b #26	ENSGT00940000154239.b #27	ENSGT00390000004254 #28	ENSGT00940000156217 #29	ENSGT00390000002768 #30	ENSGT00940000157706 #31	ENSGT00940000159280 #32	ENSGT00940000154800.ab.a.a #33	ENSGT00390000009189 #34	ENSGT00860000135288 #35	ENSGT00950000182836.a #36	ENSGT00940000160921.a #37
Arctic ground squirrel	MODERN SPECIES		NRBP1 (ENSUPAG00010006057) #7	KRTCAP3 (ENSUPAG00010006029) #8	IFT172 (ENSUPAG00010005967) #9	FNDC4 (ENSUPAG00010005951) #10	GCKR (ENSUPAG00010005928) #11	ENSUPAG00010005926 #12	ZNF512 (ENSUPAG00010005905) #13	ENSUPAG00010005900 #14	ENSUPAG00010005898 #15	SUPT7L (ENSUPAG00010005879) #16	ENSUPAG00010005877 #17	SLC4A1AP (ENSUPAG00010005811) #18	ENSUPAG00010005799 #19	MRPL33 (ENSUPAG00010005792) #20	RBKS (ENSUPAG00010005782) #21	BABAM2 (ENSUPAG00010005679) #22	FOSL2 (ENSUPAG00010005671) #23	PLB1 (ENSUPAG00010005539) #24	ENSUPAG00010005521 #25	SPDYA (ENSUPAG00010005503) #26	TRMT61B (ENSUPAG00010005499) #27	WDR43 (ENSUPAG00010005443) #28	TOGARAM2 (ENSUPAG00010005398) #29	PCARE (ENSUPAG00010005392) #30	CLIP4 (ENSUPAG00010005300) #31	ALK (ENSUPAG00010002138) #32	ENSUPAG00010002108 #33	LBH (ENSUPAG00010002100) #34	ENSUPAG00010002092 #35	LCLAT1 (ENSUPAG00010002080) #36	CAPN13 (ENSUPAG00010002040) #37
Squirrel	MODERN SPECIES	93	ZNF513 (ENSSTOG00000011385)	PPM1G (ENSSTOG00000011390)	NRBP1 (ENSSTOG00000011398) #7	KRTCAP3 (ENSSTOG00000011411) #8	IFT172 (ENSSTOG00000011418) #9	FNDC4 (ENSSTOG00000011443) #10	GCKR (ENSSTOG00000005043) #11	ENSSTOG00000025016	ZNF512 (ENSSTOG00000006337) #13	ENSSTOG00000022866 #14	ENSSTOG00000006379	SUPT7L (ENSSTOG00000025202) #16	SLC4A1AP (ENSSTOG00000023278) #18	MRPL33 (ENSSTOG00000032505) #20	RBKS (ENSSTOG00000012599) #21	BABAM2 (ENSSTOG00000012620) #22	FOSL2 (ENSSTOG00000022839) #23	PLB1 (ENSSTOG00000006327) #24	ENSSTOG00000029081 ##25	SPDYA (ENSSTOG00000026653) #26	TRMT61B (ENSSTOG00000014681) #27	WDR43 (ENSSTOG00000014687) #28	TOGARAM2 (ENSSTOG00000015741) #29	PCARE (ENSSTOG00000020236) #30	CLIP4 (ENSSTOG00000002788) #31	ALK (ENSSTOG00000002811) #32	ENSSTOG00000021506 #33	LBH (ENSSTOG00000032299) #34	LCLAT1 (ENSSTOG00000004703) #36	CAPN13 (ENSSTOG00000011438) #37	GALNT14 (ENSSTOG00000012135)
Alpin marmot	MODERN SPECIES	6	ZNF513 (ENSMMMG00000020516)	PPM1G (ENSMMMG00000020497)	NRBP1 (ENSMMMG00000020456) #7	KRTCAP3 (ENSMMMG00000020449) #8	IFT172 (ENSMMMG00000020426) #9	FNDC4 (ENSMMMG00000020411) #10	GCKR (ENSMMMG00000020379) #11	ENSMMMG00000020371 #12	ZNF512 (ENSMMMG00000020342) #13	ENSMMMG00000020337 #14	GPN1 (ENSMMMG00000020319)	SUPT7L (ENSMMMG00000020300) #16	SLC4A1AP (ENSMMMG00000020229) #18	MRPL33 (ENSMMMG00000020220) #20	RBKS (ENSMMMG00000020211) #21	BABAM2 (ENSMMMG00000020170) #22	ENSMMMG00000020162	PLB1 (ENSMMMG00000020073) #24	ENSMMMG00000020071	PPP1CB (ENSMMMG00000020061) #25	SPDYA (ENSMMMG00000020045) #26	TRMT61B (ENSMMMG00000020024) #27	WDR43 (ENSMMMG00000019990) #28	TOGARAM2 (ENSMMMG00000019973) #29	PCARE (ENSMMMG00000019967) #30	CLIP4 (ENSMMMG00000019892) #31	ENSMMMG00000019887	ALK (ENSMMMG00000019224) #32	YPEL5 (ENSMMMG00000019115) #33	LBH (ENSMMMG00000019111) #34	ENSMMMG00000019108 #35
Eurasian red squirrel	MODERN SPECIES	5	ENSSVLG00005025791	NRBP1 (ENSSVLG00005025787) #7	KRTCAP3 (ENSSVLG00005025779) #8	IFT172 (ENSSVLG00005025773) #9	FNDC4 (ENSSVLG00005025764) #10	GCKR (ENSSVLG00005025756) #11	ENSSVLG00005025747	ENSSVLG00005025740 #12	ENSSVLG00005025711 #13	ENSSVLG00005025695 #14	ENSSVLG00005025673	SUPT7L (ENSSVLG00005025640) #16	SLC4A1AP (ENSSVLG00005025630) #18	MRPL33 (ENSSVLG00005025615) #20	RBKS (ENSSVLG00005025606) #21	BABAM2 (ENSSVLG00005025587) #22	FOSL2 (ENSSVLG00005025575) #23	PLB1 (ENSSVLG00005025523) #24	PPP1CB (ENSSVLG00005025485) #25	SPDYA (ENSSVLG00005025476) #26	TRMT61B (ENSSVLG00005025465) #27	ENSSVLG00005025441	WDR43 (ENSSVLG00005025421) #28	TOGARAM2 (ENSSVLG00005025386) #29	PCARE (ENSSVLG00005025371) #30	ENSSVLG00005025359	CLIP4 (ENSSVLG00005025337) #31	ALK (ENSSVLG00005025217) #32	YPEL5 (ENSSVLG00005025180) #33	ENSSVLG00005025165 #35	LBH (ENSSVLG00005025129) #34
Hystricomorpha	ANCESTRAL SPECIES	8	ENSGT00950000183212.B	ENSGT00940000158687	ENSGT00940000158427	ENSGT00940000155605 #7	ENSGT00390000004700.b #8	ENSGT00940000153417.B #9	ENSGT00390000004923.B #10	ENSGT00390000005345 #11	ENSGT00940000166441	ENSGT00940000158595 #13	ENSGT00950000183172.C	ENSGT00390000005572 #16	ENSGT00940000155320 #18	ENSGT00390000010130 #20	ENSGT00390000005743 #21	ENSGT00390000004208 #22	ENSGT00940000158876 #23	ENSGT00530000063883 #24	ENSGT00940000154644.n #25	ENSGT00940000154524.b #26	ENSGT00940000154239.b #27	ENSGT00390000004254 #28	ENSGT00940000156217 #29	ENSGT00390000002768 #30	ENSGT00940000157706 #31	ENSGT00940000159280 #32	ENSGT00940000154800.ab #33	ENSGT00390000009189 #34	ENSGT00950000182836.a #36	ENSGT00940000160921 #37	ENSGT00940000158182
Hystricomorpha_a	ANCESTRAL SPECIES	31	ENSGT00950000183212.B	ENSGT00940000158687	ENSGT00940000158427	ENSGT00940000155605 #7	ENSGT00390000004700.b #8	ENSGT00940000153417.B #9	ENSGT00390000004923.B #10	ENSGT00390000005345 #11	ENSGT00940000166441	ENSGT00940000158595 #13	ENSGT00950000183172.C	ENSGT00390000005572 #16	ENSGT00940000155320 #18	ENSGT00390000010130 #20	ENSGT00390000005743 #21	ENSGT00390000004208 #22	ENSGT00940000158876 #23	ENSGT00530000063883 #24	ENSGT00940000154644.n #25	ENSGT00940000154524.b #26	ENSGT00940000154239.b #27	ENSGT00390000004254 #28	ENSGT00940000156217 #29	ENSGT00390000002768 #30	ENSGT00940000157706 #31	ENSGT00940000159280 #32	ENSGT00940000154800.ab #33	ENSGT00390000009189 #34	ENSGT00950000182836.a #36	ENSGT00940000160921 #37	ENSGT00940000158182
Guinea pig	MODERN SPECIES	18	SNX17 (ENSCPOG00000007749)	ZNF513 (ENSCPOG00000002437)	PPM1G (ENSCPOG00000003843)	NRBP1 (ENSCPOG00000008173) #7	KRTCAP3 (ENSCPOG00000008179) #8	IFT172 (ENSCPOG00000008180) #9	FNDC4 (ENSCPOG00000021283) #10	GCKR (ENSCPOG00000008207) #11	ENSCPOG00000031561	ZNF512 (ENSCPOG00000004356) #13	GPN1 (ENSCPOG00000004359)	SUPT7L (ENSCPOG00000004365) #16	SLC4A1AP (ENSCPOG00000004368) #18	MRPL33 (ENSCPOG00000030574) #20	RBKS (ENSCPOG00000001350) #21	BABAM2 (ENSCPOG00000012744) #22	FOSL2 (ENSCPOG00000035768) #23	PLB1 (ENSCPOG00000010817) #24	PPP1CB (ENSCPOG00000007824) #25	SPDYA (ENSCPOG00000025578) #26	TRMT61B (ENSCPOG00000010849) #27	WDR43 (ENSCPOG00000010854) #28	ENSCPOG00000032155 #29	PCARE (ENSCPOG00000004688) #30	CLIP4 (ENSCPOG00000008221) #31	ALK (ENSCPOG00000008234) #32	YPEL5 (ENSCPOG00000033007) #33	LBH (ENSCPOG00000037436) #34	LCLAT1 (ENSCPOG00000035779) #36	CAPN13 (ENSCPOG00000004800) #37	GALNT14 (ENSCPOG00000004020)
Hystricomorpha_b	ANCESTRAL SPECIES	26	ENSGT00950000183212.B	ENSGT00940000158687	ENSGT00940000158427	ENSGT00940000155605 #7	ENSGT00390000004700.b #8	ENSGT00940000153417.B #9	ENSGT00390000004923.B #10	ENSGT00390000005345 #11	ENSGT00940000166441	ENSGT00940000158595 #13	ENSGT00950000183172.C	ENSGT00390000005572 #16	ENSGT00940000155320 #18	ENSGT00390000010130 #20	ENSGT00390000005743 #21	ENSGT00390000004208 #22	ENSGT00940000158876 #23	ENSGT00530000063883 #24	ENSGT00940000154644.n #25	ENSGT00940000154524.b #26	ENSGT00940000154239.b #27	ENSGT00390000004254 #28	ENSGT00940000156217 #29	ENSGT00390000002768 #30	ENSGT00940000157706 #31	ENSGT00940000159280 #32	ENSGT00940000154800.ab #33	ENSGT00390000009189 #34	ENSGT00950000182836.a #36	ENSGT00940000160921 #37	ENSGT00940000158182
Degu	MODERN SPECIES	60	SNX17 (ENSODEG00000006172)	ZNF513 (ENSODEG00000007011)	ENSODEG00000006334	ENSODEG00000007274 #7	KRTCAP3 (ENSODEG00000007281) #8	IFT172 (ENSODEG00000007166) #9	FNDC4 (ENSODEG00000006552) #10	GCKR (ENSODEG00000009954) #11	ENSODEG00000008582 #13	GPN1 (ENSODEG00000007092)	SUPT7L (ENSODEG00000006721) #16	SLC4A1AP (ENSODEG00000007242) #18	ENSODEG00000006137	RBKS (ENSODEG00000008056) #21	ENSODEG00000007370	BABAM2 (ENSODEG00000006164) #22	FOSL2 (ENSODEG00000005866) #23	PLB1 (ENSODEG00000006922) #24	ENSODEG00000009530 #25	WDR43 (ENSODEG00000006870) #28	ENSODEG00000006279	TOGARAM2 (ENSODEG00000006280) #29	PCARE (ENSODEG00000007034) #30	ENSODEG00000006576	CLIP4 (ENSODEG00000006913) #31	ALK (ENSODEG00000006085) #32	ENSODEG00000006344 #33	LBH (ENSODEG00000005823) #34	LCLAT1 (ENSODEG00000009140) #36	CAPN13 (ENSODEG00000007148) #37	GALNT14 (ENSODEG00000006969)
Long-tailed chinchilla	MODERN SPECIES	176	SNX17 (ENSCLAG00000011730)	ZNF513 (ENSCLAG00000011940)	PPM1G (ENSCLAG00000013329)	NRBP1 (ENSCLAG00000007740) #7	KRTCAP3 (ENSCLAG00000006886) #8	IFT172 (ENSCLAG00000007963) #9	FNDC4 (ENSCLAG00000012255) #10	GCKR (ENSCLAG00000008563) #11	ENSCLAG00000007909	ZNF512 (ENSCLAG00000006325) #13	GPN1 (ENSCLAG00000008226)	SUPT7L (ENSCLAG00000008528) #16	SLC4A1AP (ENSCLAG00000009564) #18	MRPL33 (ENSCLAG00000007340) #20	RBKS (ENSCLAG00000007827) #21	BABAM2 (ENSCLAG00000008621) #22	FOSL2 (ENSCLAG00000006395) #23	PLB1 (ENSCLAG00000007571) #24	PPP1CB (ENSCLAG00000015968) #25	SPDYA (ENSCLAG00000009265) #26	TRMT61B (ENSCLAG00000010411) #27	WDR43 (ENSCLAG00000011898) #28	TOGARAM2 (ENSCLAG00000014755) #29	PCARE (ENSCLAG00000009328) #30	CLIP4 (ENSCLAG00000010829) #31	ALK (ENSCLAG00000007813) #32	YPEL5 (ENSCLAG00000007933) #33	LBH (ENSCLAG00000008113) #34	ENSCLAG00000008624 #36	CAPN13 (ENSCLAG00000013138) #37	GALNT14 (ENSCLAG00000016568)
Naked mole-rat female	MODERN SPECIES	23	FAM228B (ENSHGLG00000006053)	ENSHGLG00000010370	ENSHGLG00000016470	ENSHGLG00000034088	ENSHGLG00000016565 #10	ENSHGLG00000016609 #9	ENSHGLG00000014981 #13	ENSHGLG00000020552	GPN1 (ENSHGLG00000037565)	SUPT7L (ENSHGLG00000005764) #16	ENSHGLG00000006239 #18	ENSHGLG00000008938 #20	ENSHGLG00000000452	RBKS (ENSHGLG00000005560) #21	ENSHGLG00000036737	BABAM2 (ENSHGLG00000005691) #22	ENSHGLG00000008460	ENSHGLG00000034177	FOSL2 (ENSHGLG00000046142) #23	PLB1 (ENSHGLG00000013913) #24	PPP1CB (ENSHGLG00000013887) #25	SPDYA (ENSHGLG00000014672) #26	TRMT61B (ENSHGLG00000006295) #27	WDR43 (ENSHGLG00000006912) #28	ENSHGLG00000009603 #29	PCARE (ENSHGLG00000018422) #30	CLIP4 (ENSHGLG00000005891) #31	ENSHGLG00000013620	ALK (ENSHGLG00000009536) #32	YPEL5 (ENSHGLG00000047773) #33	ENSHGLG00000047172 #34