Glires	ANCESTRAL SPECIES	9	ENSGT00940000155945	ENSGT00940000154374.a	ENSGT00620000088615	ENSGT00940000163762.b	ENSGT00390000000642	ENSGT00940000156611	ENSGT00940000154787	ENSGT00940000158763	ENSGT00550000074961 #15	ENSGT00390000009566 #16	ENSGT00940000153772.B #17	ENSGT00940000158501 #18	ENSGT00390000016384.f #19	ENSGT00940000162358 #20	ENSGT00940000157194 #21	ENSGT00940000157936 #22	ENSGT00940000153391.c.b.a #23	ENSGT00940000161534	ENSGT00940000157419 #24	ENSGT00940000159990 #25	ENSGT00940000158540 #26	ENSGT00940000156261 #27	ENSGT00950000183101.a.b.b #28	ENSGT00940000154687.B #29	ENSGT00940000163543	ENSGT00940000157216 #30	ENSGT00940000157920.a #31	ENSGT00940000161459 #32	ENSGT00940000157685 #33	ENSGT00940000159569 #34	ENSGT00940000153683.b
Rodentia	ANCESTRAL SPECIES	9	ENSGT00940000155945	ENSGT00940000154374.a	ENSGT00620000088615	ENSGT00940000163762.b	ENSGT00390000000642	ENSGT00940000156611	ENSGT00940000154787	ENSGT00940000158763	ENSGT00550000074961 #15	ENSGT00390000009566 #16	ENSGT00940000153772.B #17	ENSGT00940000158501 #18	ENSGT00390000016384.f.f #19	ENSGT00940000162358 #20	ENSGT00940000157194 #21	ENSGT00940000157936 #22	ENSGT00940000153391.c.b.a #23	ENSGT00940000161534	ENSGT00940000157419 #24	ENSGT00940000159990 #25	ENSGT00940000158540 #26	ENSGT00940000156261 #27	ENSGT00950000183101.a.b.b #28	ENSGT00940000154687.B #29	ENSGT00940000163543	ENSGT00940000157216 #30	ENSGT00940000157920.a #31	ENSGT00940000161459 #32	ENSGT00940000157685 #33	ENSGT00940000159569 #34	ENSGT00940000153683.b
Rodentia_B	ANCESTRAL SPECIES	6	ENSGT00940000160616	ENSGT00940000157955	ENSGT00940000155945	ENSGT00940000154374.a	ENSGT00390000000642	ENSGT00940000156611	ENSGT00940000154787	ENSGT00940000158763	ENSGT00550000074961 #15	ENSGT00390000009566 #16	ENSGT00940000153772.B #17	ENSGT00940000158501 #18	ENSGT00390000016384.f.f #19	ENSGT00940000162358 #20	ENSGT00940000157194 #21	ENSGT00940000157936 #22	ENSGT00940000153391.c.b.a #23	ENSGT00940000157419 #24	ENSGT00940000159990 #25	ENSGT00940000158540 #26	ENSGT00940000156261 #27	ENSGT00950000183101.a.b.b #28	ENSGT00940000154687.B #29	ENSGT00940000163543	ENSGT00940000157216 #30	ENSGT00940000157920.a #31	ENSGT00940000161459 #32	ENSGT00940000157685 #33	ENSGT00940000159569 #34	ENSGT01100000263572.a.a.b.a.b #35	ENSGT00940000163456 #36
Myomorpha	ANCESTRAL SPECIES	1	ENSGT00940000160616	ENSGT00940000157955	ENSGT00940000155945	ENSGT00940000154374.a	ENSGT00390000000642	ENSGT00940000156611	ENSGT00940000154787	ENSGT00940000158763	ENSGT00550000074961 #15	ENSGT00390000009566 #16	ENSGT00940000153772.B #17	ENSGT00940000158501 #18	ENSGT00390000016384.f.f #19	ENSGT00940000162358 #20	ENSGT00940000157194 #21	ENSGT00940000157936 #22	ENSGT00940000153391.c.b.a #23	ENSGT00940000157419 #24	ENSGT00940000159990 #25	ENSGT00940000158540 #26	ENSGT00940000156261 #27	ENSGT00950000183101.a.b.b #28	ENSGT00940000154687.B #29	ENSGT00940000163543	ENSGT00940000157216 #30	ENSGT00940000157920.a #31	ENSGT00940000161459 #32	ENSGT00940000157685 #33	ENSGT00940000159569 #34	ENSGT01100000263572.a.a.b.a.b #35	ENSGT00940000163456 #36
Muroidea	ANCESTRAL SPECIES	1	ENSGT00940000160616	ENSGT00940000157955	ENSGT00940000155945	ENSGT00940000154374.a	ENSGT00390000000642	ENSGT00940000156611	ENSGT00940000154787	ENSGT00940000158763	ENSGT00550000074961 #15	ENSGT00390000009566 #16	ENSGT00940000153772.B #17	ENSGT00940000158501 #18	ENSGT00390000016384.f.f #19	ENSGT00940000162358 #20	ENSGT00940000157194 #21	ENSGT00940000157936 #22	ENSGT00940000153391.c.b.a #23	ENSGT00940000157419 #24	ENSGT00940000159990 #25	ENSGT00940000158540 #26	ENSGT00940000156261 #27	ENSGT00950000183101.a.b.b #28	ENSGT00940000154687.B #29	ENSGT00940000163543	ENSGT00940000157216 #30	ENSGT00940000157920.a #31	ENSGT00940000161459 #32	ENSGT00940000157685 #33	ENSGT00940000159569 #34	ENSGT01100000263572.a.a.b.a.b #35	ENSGT00940000163456 #36
Muroidea_A	ANCESTRAL SPECIES	2									ENSGT00550000074961 #15	ENSGT00390000009566 #16	ENSGT00940000153772.B #17	ENSGT00940000158501 #18	ENSGT00390000016384.f.f.e.a #19	ENSGT00940000162358 #20	ENSGT00940000157194 #21	ENSGT00940000157936 #22	ENSGT00940000153391.c.b.a #23	ENSGT00940000157419 #24	ENSGT00940000159990 #25	ENSGT00940000158540 #26	ENSGT00940000156261 #27	ENSGT00950000183101.a.b.b #28	ENSGT00940000154687.B #29	ENSGT00940000163543	ENSGT00940000157216 #30	ENSGT00940000157920.a #31	ENSGT00940000161459 #32	ENSGT00940000157685 #33	ENSGT00940000159569 #34	ENSGT01100000263572.a.a.b.a.b #35	ENSGT00940000163456 #36
Cricetidae	ANCESTRAL SPECIES	12									ENSGT00550000074961 #15	ENSGT00390000009566 #16	ENSGT00940000153772.B #17	ENSGT00940000158501 #18	ENSGT00390000016384.f.f.e.a #19	ENSGT00940000162358 #20	ENSGT00940000157194 #21	ENSGT00940000157936 #22	ENSGT00940000153391.c.b.a #23	ENSGT00940000157419 #24	ENSGT00940000159990 #25	ENSGT00940000158540 #26	ENSGT00940000156261 #27	ENSGT00950000183101.a.b.b #28	ENSGT00940000154687.B #29	ENSGT00940000163543	ENSGT00940000157216 #30	ENSGT00940000157920.a #31	ENSGT00940000161459 #32	ENSGT00940000157685 #33	ENSGT00940000159569 #34	ENSGT01100000263572.a.a.b.a.b #35	ENSGT00940000163456 #36
Cricetidae_B	ANCESTRAL SPECIES	7									ENSGT00550000074961 #15	ENSGT00390000009566 #16	ENSGT00940000153772.B #17	ENSGT00940000158501 #18	ENSGT00390000016384.f.f.e.a #19	ENSGT00940000162358 #20	ENSGT00940000157194 #21	ENSGT00940000157936 #22	ENSGT00940000153391.c.b.a #23	ENSGT00940000157419 #24	ENSGT00940000159990 #25	ENSGT00940000158540 #26	ENSGT00940000156261 #27	ENSGT00950000183101.a.b.b #28	ENSGT00940000154687.B #29	ENSGT00940000163543	ENSGT00940000157216 #30	ENSGT00940000157920.a #31	ENSGT00940000161459 #32	ENSGT00940000157685 #33	ENSGT00940000159569 #34	ENSGT01100000263572.a.a.b.a.b #35	ENSGT00940000163456 #36
Northern American deer mouse	MODERN SPECIES	17									Ppp6c (ENSPEMG00000013119) #15	Scai (ENSPEMG00000017936) #16	Golga1 (ENSPEMG00000014526) #17	Arpc5l (ENSPEMG00000022681) #18	ENSPEMG00000021500 #19	Wdr38 (ENSPEMG00000010623) #20	Olfml2a (ENSPEMG00000029944) #21	Nr6a1 (ENSPEMG00000021698) #22	Nr5a1 (ENSPEMG00000018185) #23	Psmb7 (ENSPEMG00000011436) #24	Nek6 (ENSPEMG00000023305) #25	Lhx2 (ENSPEMG00000023994) #26	Dennd1a (ENSPEMG00000001409) #27	Crb2 (ENSPEMG00000023678) #28	Strbp (ENSPEMG00000022984) #29	Rabgap1 (ENSPEMG00000022679) #30	ENSPEMG00000029320 #31	Zbtb6 (ENSPEMG00000031005) #32	Rc3h2 (ENSPEMG00000023441) #33	Pdcl (ENSPEMG00000031426) #34	Or5c1 (ENSPEMG00000009385) #35	ENSPEMG00000024732 #36	Or1af1 (ENSPEMG00000024284) #37
Prairie vole	MODERN SPECIES	12	ENSMOCG00000009975	ENSMOCG00000010474	ENSMOCG00000022412	ENSMOCG00000021040	Or1j21 (ENSMOCG00000001660)	Or1j1 (ENSMOCG00000010522)	Or1n1b (ENSMOCG00000006950)	Or1n2 (ENSMOCG00000001876)	Ppp6c (ENSMOCG00000002091) #15	Scai (ENSMOCG00000021543) #16	Golga1 (ENSMOCG00000001056) #17	Arpc5l (ENSMOCG00000012044) #18	ENSMOCG00000010619 #19	Wdr38 (ENSMOCG00000016384) #20	Olfml2a (ENSMOCG00000006167) #21	Nr6a1 (ENSMOCG00000013647) #22	ENSMOCG00000000723	Nr5a1 (ENSMOCG00000022516) #23	ENSMOCG00000019583 #24	Nek6 (ENSMOCG00000020840) #25	Lhx2 (ENSMOCG00000018166) #26	ENSMOCG00000005120 #27	ENSMOCG00000020847 #27	Crb2 (ENSMOCG00000017592) #28	Strbp (ENSMOCG00000022231) #29	Gpr21 (ENSMOCG00000019492)	Rabgap1 (ENSMOCG00000015881) #30	Zbtb26 (ENSMOCG00000005785) #31	Zbtb6 (ENSMOCG00000003885) #32	Rc3h2 (ENSMOCG00000009592) #33	Pdcl (ENSMOCG00000005925) #34
Cricetinae	ANCESTRAL SPECIES	57									ENSGT00550000074961 #15	ENSGT00390000009566 #16	ENSGT00940000153772.B #17	ENSGT00940000158501 #18	ENSGT00390000016384.f.f.e.b ##19	ENSGT00940000162358 #20	ENSGT00940000157194 #21	ENSGT00940000157936 #22	ENSGT00940000153391.c.b.a #23	ENSGT00940000157419 #24	ENSGT00940000159990 #25	ENSGT00940000158540 #26	ENSGT00940000156261 #27	ENSGT00950000183101.a.b.b #28	ENSGT00940000154687.B #29	ENSGT00940000157216 #30	ENSGT00940000157920.a #31	ENSGT00940000161459 #32	ENSGT00940000157685 #33	ENSGT00940000159569 #34	ENSGT01100000263572.a.a.b.a.b #35	ENSGT00940000163456 #36	ENSGT00940000163938 #37
Chinese hamster chok1gshd	MODERN SPECIES	318	ENSCGRG00001013960	ENSCGRG00001005684	Ptgs1 (ENSCGRG00001012828)	Mrrf (ENSCGRG00001014100)	Rbm18 (ENSCGRG00001014593)	Lhx6 (ENSCGRG00001015355)	Morn5 (ENSCGRG00001017200)	Ndufa8 (ENSCGRG00001010433)	Ttll11 (ENSCGRG00001010972)	Scai (ENSCGRG00001011822) #16	Golga1 (ENSCGRG00001013164) #17	Arpc5l (ENSCGRG00001015810) #18	ENSCGRG00001016006 ##19	Wdr38 (ENSCGRG00001016663) #20	Olfml2a (ENSCGRG00001016979) #21	Nr6a1 (ENSCGRG00001017242) #22	Nr5a1 (ENSCGRG00001017535) #23	Psmb7 (ENSCGRG00001020058) #24	Nek6 (ENSCGRG00001000656) #25	Lhx2 (ENSCGRG00001001336) #26	Dennd1a (ENSCGRG00001003432) #27	ENSCGRG00001013652	ENSCGRG00001004172	Crb2 (ENSCGRG00001004582) #28	Strbp (ENSCGRG00001006354) #29	Rabgap1 (ENSCGRG00001008620) #30	Zbtb26 (ENSCGRG00001009545) #31	ENSCGRG00001013848 #32	Rc3h2 (ENSCGRG00001010006) #33	Pdcl (ENSCGRG00001010795) #34	Or5c1 (ENSCGRG00001013818) #35
Golden Hamster	MODERN SPECIES	739	Cutal (ENSMAUG00000012653)	Phf19 (ENSMAUG00000018644)	Traf1 (ENSMAUG00000018192)	Cwf19l2 (ENSMAUG00000013819)	Alkbh8 (ENSMAUG00000022157)	ENSMAUG00000011357	ENSMAUG00000022145	ENSMAUG00000021988	Ppp6c (ENSMAUG00000019280) #15	Scai (ENSMAUG00000016374) #16	Golga1 (ENSMAUG00000017375) #17	Arpc5l (ENSMAUG00000020262) #18	ENSMAUG00000001728 ##19	Wdr38 (ENSMAUG00000005054) #20	Olfml2a (ENSMAUG00000014419) #21	Nr6a1 (ENSMAUG00000020320) #22	Nr5a1 (ENSMAUG00000011097) #23	Psmb7 (ENSMAUG00000009541) #24	Nek6 (ENSMAUG00000014034) #25	Lhx2 (ENSMAUG00000000473) #26	ENSMAUG00000016980 #27	ENSMAUG00000015217 #27	Crb2 (ENSMAUG00000017538) #28	Strbp (ENSMAUG00000016102) #29	Rabgap1 (ENSMAUG00000014606) #30	Zbtb26 (ENSMAUG00000001114) #31	Zbtb6 (ENSMAUG00000000804) #32	Rc3h2 (ENSMAUG00000003117) #33	Pdcl (ENSMAUG00000002651) #34	Or5c1 (ENSMAUG00000006357) #35	Or1l8 (ENSMAUG00000006811)
Murinae	ANCESTRAL SPECIES	1	ENSGT00530000064137.a.b	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00550000074961 #15	ENSGT00390000009566 #16	ENSGT00940000153772.B #17	ENSGT00940000158501 #18	ENSGT00390000016384.f.f.e.a #19	ENSGT00940000162358 #20	ENSGT00940000157194 #21	ENSGT00940000157936 #22	ENSGT00940000153391.c.b.a #23	ENSGT00940000157419 #24	ENSGT00940000159990 #25	ENSGT00940000158540 #26	ENSGT00940000156261 #27	ENSGT00950000183101.a.b.b #28	ENSGT00940000154687.B #29	ENSGT00940000163543	ENSGT00940000157216 #30	ENSGT00940000157920.a #31	ENSGT00940000161459 #32	ENSGT00940000157685 #33	ENSGT00940000159569 #34	ENSGT01100000263572.a.a.b.a.b #35	ENSGT00940000163456 #36
Mus	ANCESTRAL SPECIES	1	ENSGT00530000064137.a.b	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00550000074961 #15	ENSGT00390000009566 #16	ENSGT00940000153772.B #17	ENSGT00940000158501 #18	ENSGT00390000016384.f.f.e.a #19	ENSGT00940000162358 #20	ENSGT00940000157194 #21	ENSGT00940000157936 #22	ENSGT00940000153391.c.b.a #23	ENSGT00940000157419 #24	ENSGT00940000159990 #25	ENSGT00940000158540 #26	ENSGT00940000156261 #27	ENSGT00950000183101.a.b.b #28	ENSGT00940000154687.B #29	ENSGT00940000163543	ENSGT00940000157216 #30	ENSGT00940000157920.a #31	ENSGT00940000161459 #32	ENSGT00940000157685 #33	ENSGT00940000159569 #34	ENSGT01100000263572.a.a.b.a.b #35	ENSGT00940000163938 #37
Mus_A	ANCESTRAL SPECIES		ENSGT00530000064137.a.b	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00550000074961 #15	ENSGT00390000009566 #16	ENSGT00940000153772.B #17	ENSGT00940000158501 #18	ENSGT00390000016384.f.f.e.a #19	ENSGT00940000162358 #20	ENSGT00940000157194 #21	ENSGT00940000157936 #22	ENSGT00940000153391.c.b.a #23	ENSGT00940000157419 #24	ENSGT00940000159990 #25	ENSGT00940000158540 #26	ENSGT00940000156261 #27	ENSGT00950000183101.a.b.b #28	ENSGT00940000154687.B #29	ENSGT00940000163543	ENSGT00940000157216 #30	ENSGT00940000157920.a #31	ENSGT00940000161459 #32	ENSGT00940000157685 #33	ENSGT00940000159569 #34	ENSGT01100000263572.a.a.b.a.b #35	ENSGT00940000163938 #37
Mus_B	ANCESTRAL SPECIES	1	ENSGT00530000064137.a.b	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00550000074961 #15	ENSGT00390000009566 #16	ENSGT00940000153772.B #17	ENSGT00940000158501 #18	ENSGT00390000016384.f.f.e.a #19	ENSGT00940000162358 #20	ENSGT00940000157194 #21	ENSGT00940000157936 #22	ENSGT00940000153391.c.b.a #23	ENSGT00940000157419 #24	ENSGT00940000159990 #25	ENSGT00940000158540 #26	ENSGT00940000156261 #27	ENSGT00950000183101.a.b.b #28	ENSGT00940000154687.B #29	ENSGT00940000163543	ENSGT00940000157216 #30	ENSGT00940000157920.a #31	ENSGT00940000161459 #32	ENSGT00940000157685 #33	ENSGT00940000159569 #34	ENSGT01100000263572.a.a.b.a.b #35	ENSGT00940000163938 #37
Mouse	MODERN SPECIES	11	Mbd5 (ENSMUSG00000036792)	Orc4 (ENSMUSG00000026761)	Acvr2a (ENSMUSG00000052155)	Zeb2 (ENSMUSG00000026872)	Gtdc1 (ENSMUSG00000036890)	Arhgap15 (ENSMUSG00000049744)	Kynu (ENSMUSG00000026866)	Lrp1b (ENSMUSG00000049252)	Ppp6c (ENSMUSG00000026753) #15	Scai (ENSMUSG00000035236) #16	Golga1 (ENSMUSG00000026754) #17	Arpc5l (ENSMUSG00000026755) #18	Rpl35 (ENSMUSG00000062997) #19	Wdr38 (ENSMUSG00000035295) #20	Olfml2a (ENSMUSG00000046618) #21	Nr6a1 (ENSMUSG00000063972) #22	Nr5a1 (ENSMUSG00000026751) #23	Psmb7 (ENSMUSG00000026750) #24	Nek6 (ENSMUSG00000026749) #25	Lhx2 (ENSMUSG00000000247) #26	Dennd1a (ENSMUSG00000035392) #27	Crb2 (ENSMUSG00000035403) #28	Gpr21 (ENSMUSG00000053164)	Strbp (ENSMUSG00000026915) #29	Rabgap1 (ENSMUSG00000035437) #30	Zbtb26 (ENSMUSG00000050714) #31	Zbtb6 (ENSMUSG00000066798) #32	Rc3h2 (ENSMUSG00000075376) #33	Pdcl (ENSMUSG00000009030) #34	Or5c1 (ENSMUSG00000049018) #35	Or1af1 (ENSMUSG00000068947) #37
Mus_C	ANCESTRAL SPECIES		ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00390000012037.x	ENSGT00550000074961 #15	ENSGT00390000009566 #16	ENSGT00940000153772.B #17	ENSGT00940000158501 #18	ENSGT00390000016384.f.f.e.a #19	ENSGT00940000162358 #20	ENSGT00940000157194 #21	ENSGT00940000157936 #22	ENSGT00940000153391.c.b.a #23	ENSGT00940000157419 #24	ENSGT00940000159990 #25	ENSGT00940000158540 #26	ENSGT00940000156261 #27	ENSGT00950000183101.a.b.b #28	ENSGT00940000154687.B #29	ENSGT00940000163543	ENSGT00940000157216 #30	ENSGT00940000157920.a #31	ENSGT00940000161459 #32	ENSGT00940000157685 #33	ENSGT00940000159569 #34	ENSGT01100000263572.a.a.b.a.b #35	ENSGT00940000163938 #37
Steppe mouse	MODERN SPECIES	3157									Ppp6c (ENSMSIG00000026363) #15	Scai (ENSMSIG00000026395) #16	Golga1 (ENSMSIG00000026434) #17	Arpc5l (ENSMSIG00000026537) #18	ENSMSIG00000026549 #19	Wdr38 (ENSMSIG00000026555) #20	Olfml2a (ENSMSIG00000026578) #21	Nr6a1 (ENSMSIG00000000135) #22	Nr5a1 (ENSMSIG00000000273) #23	Psmb7 (ENSMSIG00000000365) #24	Nek6 (ENSMSIG00000000470) #25	Lhx2 (ENSMSIG00000000576) #26	Dennd1a (ENSMSIG00000000638) #27	Crb2 (ENSMSIG00000000810) #28	Strbp (ENSMSIG00000000857) #29	Rabgap1 (ENSMSIG00000000948) #30	Zbtb26 (ENSMSIG00000001038) #31	Zbtb6 (ENSMSIG00000001048) #32	Rc3h2 (ENSMSIG00000001099) #33	Pdcl (ENSMSIG00000001175) #34	Or5c1 (ENSMSIG00000001203) #35	Or1af1 (ENSMSIG00000001213) #37	ENSMSIG00000001220
spretus	MODERN SPECIES	11	Orc4 (MGP_SPRETEiJ_G0024463)	Acvr2a (MGP_SPRETEiJ_G0024462)	Zeb2 (MGP_SPRETEiJ_G0024461)	Gtdc1 (MGP_SPRETEiJ_G0024460)	Arhgap15 (MGP_SPRETEiJ_G0024459)	Kynu (MGP_SPRETEiJ_G0024458)	Lrp1b (MGP_SPRETEiJ_G0024457)	MGP_SPRETEiJ_G0024456	Ppp6c (MGP_SPRETEiJ_G0024455) #15	Scai (MGP_SPRETEiJ_G0024454) #16	Golga1 (MGP_SPRETEiJ_G0024453) #17	Arpc5l (MGP_SPRETEiJ_G0024452) #18	MGP_SPRETEiJ_G0024451 #19	Wdr38 (MGP_SPRETEiJ_G0024450) #20	Olfml2a (MGP_SPRETEiJ_G0024449) #21	Nr6a1 (MGP_SPRETEiJ_G0024448) #22	Nr5a1 (MGP_SPRETEiJ_G0024447) #23	Psmb7 (MGP_SPRETEiJ_G0024446) #24	Nek6 (MGP_SPRETEiJ_G0024445) #25	Lhx2 (MGP_SPRETEiJ_G0024444) #26	Dennd1a (MGP_SPRETEiJ_G0024443) #27	Crb2 (MGP_SPRETEiJ_G0024442) #28	Gpr21 (MGP_SPRETEiJ_G0024441)	MGP_SPRETEiJ_G0024440 #29	Rabgap1 (MGP_SPRETEiJ_G0024439) #30	Zbtb26 (MGP_SPRETEiJ_G0024438) #31	Zbtb6 (MGP_SPRETEiJ_G0024437) #32	Rc3h2 (MGP_SPRETEiJ_G0024436) #33	Pdcl (MGP_SPRETEiJ_G0024435) #34	Or5c1 (MGP_SPRETEiJ_G0024434) #35	Or1af1 (MGP_SPRETEiJ_G0024433) #37
Ryukyu mouse	MODERN SPECIES	11	Orc4 (MGP_CAROLIEiJ_G0023543)	Acvr2a (MGP_CAROLIEiJ_G0023542)	Zeb2 (MGP_CAROLIEiJ_G0023541)	Gtdc1 (MGP_CAROLIEiJ_G0023540)	Arhgap15 (MGP_CAROLIEiJ_G0023539)	MGP_CAROLIEiJ_G0023538	Lrp1b (MGP_CAROLIEiJ_G0023537)	MGP_CAROLIEiJ_G0023536	Ppp6c (MGP_CAROLIEiJ_G0023535) #15	Scai (MGP_CAROLIEiJ_G0023534) #16	Golga1 (MGP_CAROLIEiJ_G0023533) #17	Arpc5l (MGP_CAROLIEiJ_G0023532) #18	MGP_CAROLIEiJ_G0023531 #19	Wdr38 (MGP_CAROLIEiJ_G0023530) #20	Olfml2a (MGP_CAROLIEiJ_G0023529) #21	Nr6a1 (MGP_CAROLIEiJ_G0023528) #22	Nr5a1 (MGP_CAROLIEiJ_G0023527) #23	Psmb7 (MGP_CAROLIEiJ_G0023526) #24	Nek6 (MGP_CAROLIEiJ_G0023525) #25	Lhx2 (MGP_CAROLIEiJ_G0023524) #26	Dennd1a (MGP_CAROLIEiJ_G0023523) #27	Crb2 (MGP_CAROLIEiJ_G0023522) #28	Gpr21 (MGP_CAROLIEiJ_G0023521)	Strbp (MGP_CAROLIEiJ_G0023520) #29	Rabgap1 (MGP_CAROLIEiJ_G0023519) #30	Zbtb26 (MGP_CAROLIEiJ_G0023518) #31	Zbtb6 (MGP_CAROLIEiJ_G0023517) #32	Rc3h2 (MGP_CAROLIEiJ_G0023516) #33	Pdcl (MGP_CAROLIEiJ_G0023515) #34	Or5c1 (MGP_CAROLIEiJ_G0023514) #35	Or1af1 (MGP_CAROLIEiJ_G0023513) #37
Shrew mouse	MODERN SPECIES	16	Epc2 (MGP_PahariEiJ_G0024996)	Mbd5 (MGP_PahariEiJ_G0024995)	Orc4 (MGP_PahariEiJ_G0024994)	Acvr2a (MGP_PahariEiJ_G0024993)	Zeb2 (MGP_PahariEiJ_G0024992)	Gtdc1 (MGP_PahariEiJ_G0024991)	Arhgap15 (MGP_PahariEiJ_G0024990)	Kynu (MGP_PahariEiJ_G0024989)	Lrp1b (MGP_PahariEiJ_G0024988)	Ppp6c (MGP_PahariEiJ_G0024987) #15	Scai (MGP_PahariEiJ_G0024986) #16	Golga1 (MGP_PahariEiJ_G0024985) #17	Arpc5l (MGP_PahariEiJ_G0024984) #18	MGP_PahariEiJ_G0024983 #19	Olfml2a (MGP_PahariEiJ_G0024982) #21	Nr6a1 (MGP_PahariEiJ_G0024981) #22	Nr5a1 (MGP_PahariEiJ_G0024980) #23	Psmb7 (MGP_PahariEiJ_G0024979) #24	Nek6 (MGP_PahariEiJ_G0024978) #25	Lhx2 (MGP_PahariEiJ_G0024977) #26	Dennd1a (MGP_PahariEiJ_G0024976) #27	Crb2 (MGP_PahariEiJ_G0024975) #28	Gpr21 (MGP_PahariEiJ_G0024974)	Strbp (MGP_PahariEiJ_G0024973) #29	Rabgap1 (MGP_PahariEiJ_G0024972) #30	Zbtb26 (MGP_PahariEiJ_G0024971) #31	Zbtb6 (MGP_PahariEiJ_G0024970) #32	Rc3h2 (MGP_PahariEiJ_G0024969) #33	Pdcl (MGP_PahariEiJ_G0024968) #34	Or5c1 (MGP_PahariEiJ_G0024967) #35	Or1af1 (MGP_PahariEiJ_G0024966) #37
Rat	MODERN SPECIES	13	ENSRNOG00000067798	Zeb2 (ENSRNOG00000004677)	Gtdc1 (ENSRNOG00000031038)	Arhgap15 (ENSRNOG00000031168)	Kynu (ENSRNOG00000029993)	Lrp1b (ENSRNOG00000030243)	LOC100362366 (ENSRNOG00000028690)	AABR07051831.1 (ENSRNOG00000015854)	Ppp6c (ENSRNOG00000015145) #15	Scai (ENSRNOG00000025278) #16	Golga1 (ENSRNOG00000014493) #17	Arpc5l (ENSRNOG00000014317) #18	Rpl35 (ENSRNOG00000014272) ##19	Wdr38 (ENSRNOG00000014102) #20	Olfml2a (ENSRNOG00000014034) #21	Nr6a1 (ENSRNOG00000013232) #22	Nr5a1 (ENSRNOG00000012682) #23	Rps20 (ENSRNOG00000029627)	ENSRNOG00000066446	Psmb7 (ENSRNOG00000011732) #24	Nek6 (ENSRNOG00000010897) #25	Lhx2 (ENSRNOG00000010551) #26	Dennd1a (ENSRNOG00000010526) #27	Crb2 (ENSRNOG00000025498) #28	RGD1561137 (ENSRNOG00000030143)	Strbp (ENSRNOG00000010150) #29	Gpr21 (ENSRNOG00000042269)	Rabgap1 (ENSRNOG00000009402) #30	Zbtb26 (ENSRNOG00000009346) #31	Zbtb6 (ENSRNOG00000009340) #32	Rc3h2 (ENSRNOG00000009196) #33
Upper Galilee mountains blind mole rat	MODERN SPECIES	513	Zbtb43 (ENSNGAG00000009744)	Lmx1b (ENSNGAG00000013286)	Mvb12b (ENSNGAG00000012640)	Pbx3 (ENSNGAG00000020873)	Mapkap1 (ENSNGAG00000002676)	Gapvd1 (ENSNGAG00000016173)	Hspa5 (ENSNGAG00000016525)	Rabepk (ENSNGAG00000009850)	ENSNGAG00000000167 #15	Scai (ENSNGAG00000009532) #16	Golga1 (ENSNGAG00000017928) #17	Arpc5l (ENSNGAG00000004816) #18	ENSNGAG00000012132 #19	ENSNGAG00000016210	Olfml2a (ENSNGAG00000006763) #21	Nr6a1 (ENSNGAG00000019760) #22	Nr5a1 (ENSNGAG00000018329) #23	Psmb7 (ENSNGAG00000016549) #24	Nek6 (ENSNGAG00000017493) #25	Lhx2 (ENSNGAG00000013721) #26	ENSNGAG00000003822 #27	ENSNGAG00000011495 #27	Crb2 (ENSNGAG00000004692) #28	Strbp (ENSNGAG00000014638) #29	Gpr21 (ENSNGAG00000009678)	Rabgap1 (ENSNGAG00000017183) #30	Zbtb26 (ENSNGAG00000001562) #31	Zbtb6 (ENSNGAG00000021046) #32	ENSNGAG00000009763 #33	Pdcl (ENSNGAG00000005582) #34	Or5c1 (ENSNGAG00000015367) #35
Lesser Egyptian jerboa	MODERN SPECIES	94			ENSJJAG00000023751	Mapkap1 (ENSJJAG00000014299)	Gapvd1 (ENSJJAG00000010351)	Hspa5 (ENSJJAG00000023256)	Rabepk (ENSJJAG00000023084)	ENSJJAG00000011633	ENSJJAG00000000698	Scai (ENSJJAG00000020518) #16	Golga1 (ENSJJAG00000024183) #17	Arpc5l (ENSJJAG00000013733) #18	ENSJJAG00000014897 #19	Wdr38 (ENSJJAG00000008331) #20	Olfml2a (ENSJJAG00000017354) #21	Nr6a1 (ENSJJAG00000016130) #22	Nr5a1 (ENSJJAG00000023318) #23	ENSJJAG00000020212 #24	Nek6 (ENSJJAG00000015974) #25	Lhx2 (ENSJJAG00000015440) #26	ENSJJAG00000018640 #27	Crb2 (ENSJJAG00000019604) #28	Strbp (ENSJJAG00000008449) #29	Gpr21 (ENSJJAG00000010982)	Rabgap1 (ENSJJAG00000014056) #30	ENSJJAG00000002859 #31	Zbtb6 (ENSJJAG00000007276) #32	Rc3h2 (ENSJJAG00000022376) #33	Pdcl (ENSJJAG00000011208) #34	ENSJJAG00000024210	ENSJJAG00000011225
Kangaroo rat	MODERN SPECIES	374	Zbtb43 (ENSDORG00000028519)	Lmx1b (ENSDORG00000002371)	Mvb12b (ENSDORG00000027922)	ENSDORG00000024134	Mapkap1 (ENSDORG00000013292)	Gapvd1 (ENSDORG00000013673)	Hspa5 (ENSDORG00000014419)	Rabepk (ENSDORG00000014417)	ENSDORG00000028487	Scai (ENSDORG00000012138) #16	Golga1 (ENSDORG00000012132) #17	Arpc5l (ENSDORG00000027899) #18	ENSDORG00000012125 #19	Wdr38 (ENSDORG00000012116) #20	Olfml2a (ENSDORG00000013607) #21	Nr6a1 (ENSDORG00000013606) #22	Nr5a1 (ENSDORG00000028222) #23	Psmb7 (ENSDORG00000014519) #24	Nek6 (ENSDORG00000014518) #25	ENSDORG00000025549	Lhx2 (ENSDORG00000025403) #26	Dennd1a (ENSDORG00000002817) #27	Crb2 (ENSDORG00000002814) #28	ENSDORG00000012137 #29	Gpr21 (ENSDORG00000012136)	Rabgap1 (ENSDORG00000012123) #30	Zbtb26 (ENSDORG00000006402) #31	Zbtb6 (ENSDORG00000025398) #32	Rc3h2 (ENSDORG00000006398) #33	Pdcl (ENSDORG00000029509) #34	Or5c1 (ENSDORG00000025218) #35
Rodentia_A	ANCESTRAL SPECIES	11	ENSGT00940000157955	ENSGT00940000155945	ENSGT00940000154374.a	ENSGT00620000088615	ENSGT00390000000642	ENSGT00940000156611	ENSGT00940000154787	ENSGT00940000158763	ENSGT00550000074961 #15	ENSGT00390000009566 #16	ENSGT00940000153772.B #17	ENSGT00940000158501 #18	ENSGT00390000016384.f.f #19	ENSGT00940000162358 #20	ENSGT00940000157194 #21	ENSGT00940000157936 #22	ENSGT00940000153391.c.b.a #23	ENSGT00940000161534	ENSGT00940000157419 #24	ENSGT00940000159990 #25	ENSGT00940000158540 #26	ENSGT00940000156261 #27	ENSGT00950000183101.a.b.b #28	ENSGT00940000154687.B #29	ENSGT00940000163543	ENSGT00940000157216 #30	ENSGT00940000157920.a #31	ENSGT00940000161459 #32	ENSGT00940000157685 #33	ENSGT00940000159569 #34	ENSGT00940000153683.b
Sciuridae	ANCESTRAL SPECIES	6	ENSGT00940000157955	ENSGT00940000155945	ENSGT00940000154374.a	ENSGT00620000088615	ENSGT00390000000642	ENSGT00940000156611	ENSGT00940000154787	ENSGT00940000158763	ENSGT00550000074961 #15	ENSGT00390000009566 #16	ENSGT00940000153772.B #17	ENSGT00940000158501 #18	ENSGT00390000016384.f.f #19	ENSGT00940000162358 #20	ENSGT00940000157194 #21	ENSGT00940000157936 #22	ENSGT00940000153391.c.b.a #23	ENSGT00940000161534	ENSGT00940000157419 #24	ENSGT00940000159990.j #25	ENSGT00940000158540 #26	ENSGT00940000156261 #27	ENSGT00950000183101.a.b.b #28	ENSGT00940000154687.B #29	ENSGT00940000163543	ENSGT00940000157216 #30	ENSGT00940000157920.a #31	ENSGT00940000161459 #32	ENSGT00940000157685 #33	ENSGT00940000159569 #34	ENSGT00940000153683.b
Marmotini	ANCESTRAL SPECIES	1	ENSGT00940000157955	ENSGT00940000155945	ENSGT00940000154374.a	ENSGT00620000088615	ENSGT00390000000642	ENSGT00940000156611	ENSGT00940000154787	ENSGT00940000158763	ENSGT00550000074961 #15	ENSGT00390000009566 #16	ENSGT00940000153772.B #17	ENSGT00940000158501 #18	ENSGT00390000016384.f.f #19	ENSGT00940000162358 #20	ENSGT00940000157194 #21	ENSGT00940000157936 #22	ENSGT00940000153391.c.b.a #23	ENSGT00940000161534	ENSGT00940000157419 #24	ENSGT00940000159990.j #25	ENSGT00940000158540 #26	ENSGT00940000156261 #27	ENSGT00950000183101.a.b.b #28	ENSGT00940000154687.B #29	ENSGT00940000163543	ENSGT00940000157216 #30	ENSGT00940000157920.a #31	ENSGT00940000161459 #32	ENSGT00940000157685 #33	ENSGT00940000159569 #34	ENSGT00940000153683.b
Marmotini_b	ANCESTRAL SPECIES	2	ENSGT00940000160616	ENSGT00940000157955	ENSGT00940000155945	ENSGT00940000154374.a	ENSGT00390000000642	ENSGT00940000156611	ENSGT00940000154787	ENSGT00940000158763	ENSGT00550000074961 #15	ENSGT00390000009566 #16	ENSGT00940000153772.B #17	ENSGT00940000158501 #18	ENSGT00390000016384.f.f #19	ENSGT00940000162358 #20	ENSGT00940000157194 #21	ENSGT00940000157936 #22	ENSGT00940000153391.c.b.a #23	ENSGT00940000161534	ENSGT00940000157419 #24	ENSGT00940000159990.j #25	ENSGT00940000158540 #26	ENSGT00940000156261 #27	ENSGT00950000183101.a.b.b #28	ENSGT00940000154687.B #29	ENSGT00940000163543	ENSGT00940000157216 #30	ENSGT00940000157920.a #31	ENSGT00940000161459 #32	ENSGT00940000157685 #33	ENSGT00940000159569 #34	ENSGT00940000153683.b
Arctic ground squirrel	MODERN SPECIES	44	ENSUPAG00010013827	LMX1B (ENSUPAG00010013815)	MVB12B (ENSUPAG00010013802)	PBX3 (ENSUPAG00010013778)	MAPKAP1 (ENSUPAG00010013693)	GAPVD1 (ENSUPAG00010013640)	HSPA5 (ENSUPAG00010013632)	RABEPK (ENSUPAG00010013628)	PPP6C (ENSUPAG00010013600) #15	SCAI (ENSUPAG00010013570) #16	GOLGA1 (ENSUPAG00010013479) #17	ARPC5L (ENSUPAG00010013460) #18	WDR38 (ENSUPAG00010013438) #20	RPL35 (ENSUPAG00010013420) #19	OLFML2A (ENSUPAG00010013389) #21	NR6A1 (ENSUPAG00010013329) #22	NR5A1 (ENSUPAG00010013310) #23	ADGRD2 (ENSUPAG00010013284)	PSMB7 (ENSUPAG00010013273) #24	NEK6 (ENSUPAG00010013255) #25	LHX2 (ENSUPAG00010013245) #26	DENND1A (ENSUPAG00010013123) #27	CRB2 (ENSUPAG00010013102) #28	STRBP (ENSUPAG00010012985) #29	RABGAP1 (ENSUPAG00010012857) #30	ZBTB26 (ENSUPAG00010012848) #31	ZBTB6 (ENSUPAG00010012844) #32	RC3H2 (ENSUPAG00010012762) #33	PDCL (ENSUPAG00010012754) #34	OR1K1 (ENSUPAG00010012753)	OR5C1 (ENSUPAG00010012749) #35
Squirrel	MODERN SPECIES	87	ZBTB43 (ENSSTOG00000007435)	LMX1B (ENSSTOG00000026973)	MVB12B (ENSSTOG00000021458)	PBX3 (ENSSTOG00000013679)	MAPKAP1 (ENSSTOG00000011275)	GAPVD1 (ENSSTOG00000011260)	Hspa5 (ENSSTOG00000011243)	RABEPK (ENSSTOG00000011234)	PPP6C (ENSSTOG00000007971) #15	SCAI (ENSSTOG00000007948) #16	GOLGA1 (ENSSTOG00000007917) #17	ARPC5L (ENSSTOG00000007907) #18	RPL35 (ENSSTOG00000007901) #19	WDR38 (ENSSTOG00000007867) #20	OLFML2A (ENSSTOG00000007852) #21	NR6A1 (ENSSTOG00000022764) #22	NR5A1 (ENSSTOG00000000396) #23	PSMB7 (ENSSTOG00000013826) #24	NEK6 (ENSSTOG00000013817) #25	LHX2 (ENSSTOG00000000794) #26	DENND1A (ENSSTOG00000023765) #27	CRB2 (ENSSTOG00000021477) #28	STRBP (ENSSTOG00000004790) #29	GPR21 (ENSSTOG00000030817)	RABGAP1 (ENSSTOG00000004750) #30	ZBTB26 (ENSSTOG00000004739) #31	RC3H2 (ENSSTOG00000010655) #33	PDCL (ENSSTOG00000010651) #34	OR1K1 (ENSSTOG00000010649)	ENSSTOG00000012187	ENSSTOG00000020056 #36
Alpin marmot	MODERN SPECIES	47	PBX3 (ENSMMMG00000017764)	ENSMMMG00000017816	ENSMMMG00000017820	MAPKAP1 (ENSMMMG00000017830)	GAPVD1 (ENSMMMG00000017880)	HSPA5 (ENSMMMG00000017949)	ENSMMMG00000017965	PPP6C (ENSMMMG00000017971) #15	SCAI (ENSMMMG00000017999) #16	ENSMMMG00000018021	GOLGA1 (ENSMMMG00000018029) #17	ARPC5L (ENSMMMG00000018071) #18	RPL35 (ENSMMMG00000018074) #19	WDR38 (ENSMMMG00000018077) #20	OLFML2A (ENSMMMG00000018107) #21	NR6A1 (ENSMMMG00000018148) #22	NR5A1 (ENSMMMG00000018155) #23	PSMB7 (ENSMMMG00000018175) #24	NEK6 (ENSMMMG00000018189) #25	ENSMMMG00000018209 #26	DENND1A (ENSMMMG00000018266) #27	ENSMMMG00000018296	CRB2 (ENSMMMG00000018308) #28	STRBP (ENSMMMG00000018353) #29	RABGAP1 (ENSMMMG00000018398) #30	ZBTB26 (ENSMMMG00000018454) #31	ZBTB6 (ENSMMMG00000018466) #32	RC3H2 (ENSMMMG00000018470) #33	PDCL (ENSMMMG00000018517) #34	OR1K1 (ENSMMMG00000018530)	OR5C1 (ENSMMMG00000018535) #35
Eurasian red squirrel	MODERN SPECIES	6	PBX3 (ENSSVLG00005023289)	MAPKAP1 (ENSSVLG00005022966)	GAPVD1 (ENSSVLG00005022773)	HSPA5 (ENSSVLG00005022700)	RABEPK (ENSSVLG00005022664)	ENSSVLG00005022620 #15	ENSSVLG00005022574	ENSSVLG00005022544	SCAI (ENSSVLG00005022411) #16	GOLGA1 (ENSSVLG00005022372) #17	ARPC5L (ENSSVLG00005022345) #18	RPL35 (ENSSVLG00005022293) #19	WDR38 (ENSSVLG00005022161) #20	OLFML2A (ENSSVLG00005022068) #21	ENSSVLG00005022017	NR6A1 (ENSSVLG00005021745) #22	NR5A1 (ENSSVLG00005021643) #23	ADGRD2 (ENSSVLG00005021497)	PSMB7 (ENSSVLG00005021459) #24	NEK6 (ENSSVLG00005021363) #25	LHX2 (ENSSVLG00005021337) #26	ENSSVLG00005021279	DENND1A (ENSSVLG00005021227) #27	CRB2 (ENSSVLG00005021075) #28	STRBP (ENSSVLG00005021011) #29	RABGAP1 (ENSSVLG00005020789) #30	ZBTB26 (ENSSVLG00005020757) #31	ZBTB6 (ENSSVLG00005020741) #32	RC3H2 (ENSSVLG00005020372) #33	PDCL (ENSSVLG00005020286) #34	OR1K1 (ENSSVLG00005020263)
Hystricomorpha	ANCESTRAL SPECIES	7	ENSGT00940000159944	ENSGT00940000160616	ENSGT00940000157955	ENSGT00940000155945	ENSGT00940000154374.a	ENSGT00390000000642	ENSGT00940000156611	ENSGT00940000154787	ENSGT00940000158763	ENSGT00550000074961 #15	ENSGT00390000009566 #16	ENSGT00940000153772.B #17	ENSGT00940000158501 #18	ENSGT00390000016384.f.e.a ##19	ENSGT00940000157194 #21	ENSGT00940000157936 #22	ENSGT00940000153391.c.b.a #23	ENSGT00940000161534	ENSGT00940000157419 #24	ENSGT00940000159990 #25	ENSGT00940000158540 #26	ENSGT00940000156261 #27	ENSGT00950000183101.a.b.b #28	ENSGT00940000154687.B.c #29	ENSGT00940000157216 #30	ENSGT00940000163543	ENSGT00940000157920.a #31	ENSGT00940000161459 #32	ENSGT00940000157685 #33	ENSGT00940000159569 #34	ENSGT01100000263572.a.a.b.a.b #35
Hystricomorpha_a	ANCESTRAL SPECIES	5	ENSGT00940000159944	ENSGT00940000160616	ENSGT00940000157955	ENSGT00940000155945	ENSGT00940000154374.a	ENSGT00390000000642	ENSGT00940000156611	ENSGT00940000154787	ENSGT00940000158763	ENSGT00550000074961 #15	ENSGT00390000009566 #16	ENSGT00940000153772.B #17	ENSGT00940000158501 #18	ENSGT00390000016384.f.e.a ##19	ENSGT00940000157194 #21	ENSGT00940000157936 #22	ENSGT00940000153391.c.b.a #23	ENSGT00940000161534	ENSGT00940000157419 #24	ENSGT00940000159990 #25	ENSGT00940000158540 #26	ENSGT00940000156261 #27	ENSGT00950000183101.a.b.b #28	ENSGT00940000154687.B.c #29	ENSGT00940000157216 #30	ENSGT00940000157920.a #31	ENSGT00940000161459 #32	ENSGT00940000157685 #33	ENSGT00940000159569 #34	ENSGT01100000263572.a.a.b.a.b #35	ENSGT00940000163456 #36
Hystricomorpha_b	ANCESTRAL SPECIES	11	ENSGT00940000159944	ENSGT00940000160616	ENSGT00940000157955	ENSGT00940000155945	ENSGT00940000154374.a	ENSGT00390000000642	ENSGT00940000156611	ENSGT00940000154787	ENSGT00940000158763	ENSGT00550000074961 #15	ENSGT00390000009566 #16	ENSGT00940000153772.B #17	ENSGT00940000158501 #18	ENSGT00390000016384.f.e.a ##19	ENSGT00940000157194 #21	ENSGT00940000157936 #22	ENSGT00940000153391.c.b.a #23	ENSGT00940000157419 #24	ENSGT00940000159990 #25	ENSGT00940000158540 #26	ENSGT00940000156261 #27	ENSGT00950000183101.a.b.b #28	ENSGT00940000154687.B.c #29	ENSGT00940000157216 #30	ENSGT00940000157920.a #31	ENSGT00940000161459 #32	ENSGT00940000157685 #33	ENSGT00940000159569 #34	ENSGT00940000163938 #37	ENSGT00940000161916	ENSGT00940000163223
Long-tailed chinchilla	MODERN SPECIES	126	ZBTB34 (ENSCLAG00000012109)	ZBTB43 (ENSCLAG00000017099)	LMX1B (ENSCLAG00000012490)	MVB12B (ENSCLAG00000010176)	PBX3 (ENSCLAG00000009335)	MAPKAP1 (ENSCLAG00000011818)	GAPVD1 (ENSCLAG00000010577)	HSPA5 (ENSCLAG00000009815)	RABEPK (ENSCLAG00000011734)	PPP6C (ENSCLAG00000013734) #15	SCAI (ENSCLAG00000013682) #16	GOLGA1 (ENSCLAG00000011649) #17	ARPC5L (ENSCLAG00000009936) #18	RPL35 (ENSCLAG00000013142) ##19	OLFML2A (ENSCLAG00000014121) #21	NR6A1 (ENSCLAG00000012774) #22	NR5A1 (ENSCLAG00000012090) #23	PSMB7 (ENSCLAG00000013548) #24	NEK6 (ENSCLAG00000009797) #25	LHX2 (ENSCLAG00000010277) #26	DENND1A (ENSCLAG00000010455) #27	CRB2 (ENSCLAG00000015580) #28	STRBP (ENSCLAG00000010826) #29	RABGAP1 (ENSCLAG00000010301) #30	ZBTB26 (ENSCLAG00000016744) #31	ZBTB6 (ENSCLAG00000016422) #32	RC3H2 (ENSCLAG00000013261) #33	PDCL (ENSCLAG00000014566) #34	ENSCLAG00000017880 #37	ENSCLAG00000018047	ENSCLAG00000017871
Degu	MODERN SPECIES	179	PBX3 (ENSODEG00000003566)	ENSODEG00000003600	ENSODEG00000019075	MAPKAP1 (ENSODEG00000003644)	ENSODEG00000018962	GAPVD1 (ENSODEG00000003684)	HSPA5 (ENSODEG00000003702)	RABEPK (ENSODEG00000003723)	ENSODEG00000003752	ENSODEG00000003771 #15	SCAI (ENSODEG00000003843) #16	GOLGA1 (ENSODEG00000003980) #17	ENSODEG00000004095 #18	ENSODEG00000004120 ##19	OLFML2A (ENSODEG00000004138) #21	NR6A1 (ENSODEG00000004183) #22	ENSODEG00000004234	NR5A1 (ENSODEG00000004244) #23	ENSODEG00000004257 #24	ENSODEG00000019019	NEK6 (ENSODEG00000004126) #25	ENSODEG00000004179	LHX2 (ENSODEG00000004212) #26	DENND1A (ENSODEG00000004310) #27	CRB2 (ENSODEG00000004481) #28	ENSODEG00000019097	ENSODEG00000004632 #29	RABGAP1 (ENSODEG00000004811) #30	ENSODEG00000019246	ENSODEG00000019228	ZBTB26 (ENSODEG00000005887) #31
Guinea pig	MODERN SPECIES	27	ZBTB34 (ENSCPOG00000003791)	ZBTB43 (ENSCPOG00000038507)	LMX1B (ENSCPOG00000023429)	MVB12B (ENSCPOG00000036809)	PBX3 (ENSCPOG00000004530)	MAPKAP1 (ENSCPOG00000004526)	GAPVD1 (ENSCPOG00000004285)	ENSCPOG00000012520	RABEPK (ENSCPOG00000026070)	PPP6C (ENSCPOG00000004898) #15	SCAI (ENSCPOG00000001406) #16	GOLGA1 (ENSCPOG00000014706) #17	ARPC5L (ENSCPOG00000036902) #18	RPL35 (ENSCPOG00000022811) ##19	OLFML2A (ENSCPOG00000003516) #21	NR6A1 (ENSCPOG00000005970) #22	NR5A1 (ENSCPOG00000022305) #23	ADGRD2 (ENSCPOG00000027184)	PSMB7 (ENSCPOG00000007839) #24	NEK6 (ENSCPOG00000007827) #25	LHX2 (ENSCPOG00000022927) #26	DENND1A (ENSCPOG00000014548) #27	CRB2 (ENSCPOG00000010074) #28	STRBP (ENSCPOG00000009817) #29	RABGAP1 (ENSCPOG00000009811) #30	ZBTB26 (ENSCPOG00000032601) #31	ZBTB6 (ENSCPOG00000039487) #32	RC3H2 (ENSCPOG00000008511) #33	PDCL (ENSCPOG00000009509) #34	OR5C1 (ENSCPOG00000001175) #35	ENSCPOG00000024385 #36
Naked mole-rat female	MODERN SPECIES	3	LMX1B (ENSHGLG00000035542)	MVB12B (ENSHGLG00000011104)	ENSHGLG00000043708	PBX3 (ENSHGLG00000011457)	MAPKAP1 (ENSHGLG00000011921)	ENSHGLG00000012167	GAPVD1 (ENSHGLG00000012368)	HSPA5 (ENSHGLG00000045279)	RABEPK (ENSHGLG00000010878)	PPP6C (ENSHGLG00000037108) #15	SCAI (ENSHGLG00000011703) #16	GOLGA1 (ENSHGLG00000012081) #17	ARPC5L (ENSHGLG00000012246) #18	ENSHGLG00000035609 #19	OLFML2A (ENSHGLG00000012516) #21	NR6A1 (ENSHGLG00000012869) #22	NR5A1 (ENSHGLG00000042870) #23	PSMB7 (ENSHGLG00000013424) #24	NEK6 (ENSHGLG00000013776) #25	LHX2 (ENSHGLG00000014024) #26	DENND1A (ENSHGLG00000014439) #27	CRB2 (ENSHGLG00000014737) #28	ENSHGLG00000014962 #29	RABGAP1 (ENSHGLG00000010853) #30	GPR21 (ENSHGLG00000033657)	ZBTB26 (ENSHGLG00000011691) #31	ZBTB6 (ENSHGLG00000011851) #32	RC3H2 (ENSHGLG00000012014) #33	ENSHGLG00000020904	PDCL (ENSHGLG00000038582) #34	OR5C1 (ENSHGLG00000018024) #35
Lagomorpha	ANCESTRAL SPECIES	16	ENSGT00940000160616	ENSGT00940000157955	ENSGT00940000155945	ENSGT00940000154374.a	ENSGT00390000000642	ENSGT00940000156611	ENSGT00940000154787	ENSGT00940000158763	ENSGT00550000074961 #15	ENSGT00390000009566 #16	ENSGT00940000153772.B #17	ENSGT00940000158501 #18	ENSGT00390000016384.f #19	ENSGT00940000162358 #20	ENSGT00940000157194 #21	ENSGT00940000157936 #22	ENSGT00940000153391.c.b.a #23	ENSGT00940000161534	ENSGT00940000157419 #24	ENSGT00940000159990 #25	ENSGT00940000158540 #26	ENSGT00940000156261 #27	ENSGT00950000183101.a.b.b #28	ENSGT00940000154687.B #29	ENSGT00940000157216 #30	ENSGT00940000157920.a #31	ENSGT00940000157685 #33	ENSGT00940000159569 #34	ENSGT01100000263572.a.a.b.a.b #35	ENSGT00940000163456 #36	ENSGT00940000163938 #37
Rabbit	MODERN SPECIES	432	ENSOCUG00000023786	MVB12B (ENSOCUG00000014336)	PBX3 (ENSOCUG00000012302)	MAPKAP1 (ENSOCUG00000001574)	GAPVD1 (ENSOCUG00000003136)	HSPA5 (ENSOCUG00000011636)	RABEPK (ENSOCUG00000016229)	PPP6C (ENSOCUG00000009375) #15	SCAI (ENSOCUG00000012963) #16	GOLGA1 (ENSOCUG00000003976) #17	ARPC5L (ENSOCUG00000002997) #18	ENSOCUG00000002996 #19	WDR38 (ENSOCUG00000002992) #20	OLFML2A (ENSOCUG00000002473) #21	ENSOCUG00000036292	NR6A1 (ENSOCUG00000007599) #22	NR5A1 (ENSOCUG00000007848) #23	ADGRD2 (ENSOCUG00000006271)	PSMB7 (ENSOCUG00000009114) #24	ENSOCUG00000009108 #25	LHX2 (ENSOCUG00000007757) #26	DENND1A (ENSOCUG00000005351) #27	ENSOCUG00000037812	ENSOCUG00000031599	STRBP (ENSOCUG00000009397) #29	RABGAP1 (ENSOCUG00000009382) #30	ZBTB26 (ENSOCUG00000008815) #31	RC3H2 (ENSOCUG00000008804) #33	PDCL (ENSOCUG00000008799) #34	OR5C1 (ENSOCUG00000017249) #35	ENSOCUG00000010448 #36
Pika	MODERN SPECIES	1448																NR6A1 (ENSOPRG00000016686) #22	NR5A1 (ENSOPRG00000016678) #23	ENSOPRG00000016654	PSMB7 (ENSOPRG00000016646) #24