Hystricomorpha_a	ANCESTRAL SPECIES	5	ENSGT00940000159944 #7	ENSGT00940000160616 #8	ENSGT00940000157955 #9	ENSGT00940000155945 #10	ENSGT00940000154374.a #11	ENSGT00390000000642 #12	ENSGT00940000156611 #13	ENSGT00940000154787 #14	ENSGT00940000158763 #15	ENSGT00550000074961 #16	ENSGT00390000009566 #17	ENSGT00940000153772.B #18	ENSGT00940000158501 #19	ENSGT00390000016384.f.e.a #20	ENSGT00940000157194 #21	ENSGT00940000157936 #22	ENSGT00940000153391.c.b.a #23	ENSGT00940000161534	ENSGT00940000157419 #24	ENSGT00940000159990 #25	ENSGT00940000158540 #26	ENSGT00940000156261 #27	ENSGT00950000183101.a.b.b #28	ENSGT00940000154687.B.c #29	ENSGT00940000157216 #30	ENSGT00940000157920.a #31	ENSGT00940000161459 #32	ENSGT00940000157685 #33	ENSGT00940000159569 #34	ENSGT01100000263572.a.a.b.a.b	ENSGT00940000163456
Hystricomorpha_b	ANCESTRAL SPECIES	11	ENSGT00940000159944 #7	ENSGT00940000160616 #8	ENSGT00940000157955 #9	ENSGT00940000155945 #10	ENSGT00940000154374.a #11	ENSGT00390000000642 #12	ENSGT00940000156611 #13	ENSGT00940000154787 #14	ENSGT00940000158763 #15	ENSGT00550000074961 #16	ENSGT00390000009566 #17	ENSGT00940000153772.B #18	ENSGT00940000158501 #19	ENSGT00390000016384.f.e.a #20	ENSGT00940000157194 #21	ENSGT00940000157936 #22	ENSGT00940000153391.c.b.a #23	ENSGT00940000157419 #24	ENSGT00940000159990 #25	ENSGT00940000158540 #26	ENSGT00940000156261 #27	ENSGT00950000183101.a.b.b #28	ENSGT00940000154687.B.c #29	ENSGT00940000157216 #30	ENSGT00940000157920.a #31	ENSGT00940000161459 #32	ENSGT00940000157685 #33	ENSGT00940000159569 #34	ENSGT00940000163938 #35	ENSGT00940000161916 #37	ENSGT00940000163223
Long-tailed chinchilla	MODERN SPECIES	126	ZBTB34 (ENSCLAG00000012109) #7	ZBTB43 (ENSCLAG00000017099) #8	LMX1B (ENSCLAG00000012490) #9	MVB12B (ENSCLAG00000010176) #10	PBX3 (ENSCLAG00000009335) #11	MAPKAP1 (ENSCLAG00000011818) #12	GAPVD1 (ENSCLAG00000010577) #13	HSPA5 (ENSCLAG00000009815) #14	RABEPK (ENSCLAG00000011734) #15	PPP6C (ENSCLAG00000013734) #16	SCAI (ENSCLAG00000013682) #17	GOLGA1 (ENSCLAG00000011649) #18	ARPC5L (ENSCLAG00000009936) #19	RPL35 (ENSCLAG00000013142) #20	OLFML2A (ENSCLAG00000014121) #21	NR6A1 (ENSCLAG00000012774) #22	NR5A1 (ENSCLAG00000012090) #23	PSMB7 (ENSCLAG00000013548) #24	NEK6 (ENSCLAG00000009797) #25	LHX2 (ENSCLAG00000010277) #26	DENND1A (ENSCLAG00000010455) #27	CRB2 (ENSCLAG00000015580) #28	STRBP (ENSCLAG00000010826) #29	RABGAP1 (ENSCLAG00000010301) #30	ZBTB26 (ENSCLAG00000016744) #31	ZBTB6 (ENSCLAG00000016422) #32	RC3H2 (ENSCLAG00000013261) #33	PDCL (ENSCLAG00000014566) #34	ENSCLAG00000017880 #35	ENSCLAG00000018047 #36	ENSCLAG00000017871 #37
Degu	MODERN SPECIES	179	PBX3 (ENSODEG00000003566) #11	ENSODEG00000003600	ENSODEG00000019075	MAPKAP1 (ENSODEG00000003644) #12	ENSODEG00000018962	GAPVD1 (ENSODEG00000003684) #13	HSPA5 (ENSODEG00000003702) #14	RABEPK (ENSODEG00000003723) #15	ENSODEG00000003752	ENSODEG00000003771 #16	SCAI (ENSODEG00000003843) #17	GOLGA1 (ENSODEG00000003980) #18	ENSODEG00000004095 #19	ENSODEG00000004120 #20	OLFML2A (ENSODEG00000004138) #21	NR6A1 (ENSODEG00000004183) #22	ENSODEG00000004234	NR5A1 (ENSODEG00000004244) #23	ENSODEG00000004257 #24	ENSODEG00000019019	NEK6 (ENSODEG00000004126) #25	ENSODEG00000004179	LHX2 (ENSODEG00000004212) #26	DENND1A (ENSODEG00000004310) #27	CRB2 (ENSODEG00000004481) #28	ENSODEG00000019097	ENSODEG00000004632 #29	RABGAP1 (ENSODEG00000004811) #30	ENSODEG00000019246	ENSODEG00000019228	ZBTB26 (ENSODEG00000005887) #31
Guinea pig	MODERN SPECIES	27	ZBTB34 (ENSCPOG00000003791) #7	ZBTB43 (ENSCPOG00000038507) #8	LMX1B (ENSCPOG00000023429) #9	MVB12B (ENSCPOG00000036809) #10	PBX3 (ENSCPOG00000004530) #11	MAPKAP1 (ENSCPOG00000004526) #12	GAPVD1 (ENSCPOG00000004285) #13	ENSCPOG00000012520 #14	RABEPK (ENSCPOG00000026070) #15	PPP6C (ENSCPOG00000004898) #16	SCAI (ENSCPOG00000001406) #17	GOLGA1 (ENSCPOG00000014706) #18	ARPC5L (ENSCPOG00000036902) #19	RPL35 (ENSCPOG00000022811) #20	OLFML2A (ENSCPOG00000003516) #21	NR6A1 (ENSCPOG00000005970) #22	NR5A1 (ENSCPOG00000022305) #23	ADGRD2 (ENSCPOG00000027184)	PSMB7 (ENSCPOG00000007839) #24	NEK6 (ENSCPOG00000007827) #25	LHX2 (ENSCPOG00000022927) #26	DENND1A (ENSCPOG00000014548) #27	CRB2 (ENSCPOG00000010074) #28	STRBP (ENSCPOG00000009817) #29	RABGAP1 (ENSCPOG00000009811) #30	ZBTB26 (ENSCPOG00000032601) #31	ZBTB6 (ENSCPOG00000039487) #32	RC3H2 (ENSCPOG00000008511) #33	PDCL (ENSCPOG00000009509) #34	OR5C1 (ENSCPOG00000001175)	ENSCPOG00000024385