Amniota	ANCESTRAL SPECIES	12	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544
Mammalia	ANCESTRAL SPECIES	22	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544
Theria	ANCESTRAL SPECIES	13	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00390000001858 #21	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544
Eutheria	ANCESTRAL SPECIES	2	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544.a
Boreoeutheria	ANCESTRAL SPECIES	15	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00910000147398	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37
Laurasiatheria	ANCESTRAL SPECIES	13	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000168989	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000155078.a.b.a.b	ENSGT00940000154556 #26	ENSGT00910000147398	ENSGT00940000156841 #27	ENSGT00390000003682	ENSGT00940000153876.B	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34
Laurasiatheria_a	ANCESTRAL SPECIES	17	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00390000001858 #21	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00910000147398	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37
Laurasiatheria_b	ANCESTRAL SPECIES	17	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00390000001858 #21	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00910000147398	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37
Carnivora	ANCESTRAL SPECIES	19	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00390000001858 #21	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00910000147398	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37
Caniformia	ANCESTRAL SPECIES	18	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00390000001858 #21	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00910000147398	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37
Caniformia_b	ANCESTRAL SPECIES	11	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00390000001858 #21	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544.a
Ursidae	ANCESTRAL SPECIES	9	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a.p #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00390000001858 #21	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c.x #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544.a
Ursus	ANCESTRAL SPECIES	20	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00390000009819.a.a.o #14	ENSGT00530000063410.a.p #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00390000001858 #21	ENSGT00940000154186.a #20	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c.x #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544.a
Polar bear	MODERN SPECIES	223	CCT4 (ENSUMAG00000019983) #7	COMMD1 (ENSUMAG00000020922) #8	B3GNT2 (ENSUMAG00000020928) #9	TMEM17 (ENSUMAG00000020931) #10	EHBP1 (ENSUMAG00000020940) #11	ENSUMAG00000020944 #12	WDPCP (ENSUMAG00000020957) #13	ENSUMAG00000020964 #14	MDH1 (ENSUMAG00000020965) #15	UGP2 (ENSUMAG00000020975) #16	VPS54 (ENSUMAG00000020982) #17	PELI1 (ENSUMAG00000021002) #18	LGALSL (ENSUMAG00000021007) #19	AFTPH (ENSUMAG00000021014) #20	ENSUMAG00000021019 #21	SLC1A4 (ENSUMAG00000021032) #22	CEP68 (ENSUMAG00000021035) #23	RAB1A (ENSUMAG00000021038) #24	ENSUMAG00000021041 #25	ACTR2 (ENSUMAG00000021042) #26	SPRED2 (ENSUMAG00000021053) #27	MEIS1 (ENSUMAG00000021098) #28	ETAA1 (ENSUMAG00000021106) #29	C1D (ENSUMAG00000021118) #30	DNAAF10 (ENSUMAG00000021123) #31	PNO1 (ENSUMAG00000021126) #32	PPP3R1 (ENSUMAG00000021129) #33	CNRIP1 (ENSUMAG00000021144) #34	PLEK (ENSUMAG00000021146) #35	FBXO48 (ENSUMAG00000021148) #36	APLF (ENSUMAG00000021151) #37
American black bear	MODERN SPECIES	6107																SLC1A4 (ENSUAMG00000014611) #22	CEP68 (ENSUAMG00000014614) #23	RAB1A (ENSUAMG00000014617) #24
Giant Panda	MODERN SPECIES	14	XPO1 (ENSAMEG00000003460)	FAM161A (ENSAMEG00000003523)	CCT4 (ENSAMEG00000003530) #7	COMMD1 (ENSAMEG00000008249) #8	B3GNT2 (ENSAMEG00000005508) #9	TMEM17 (ENSAMEG00000005503) #10	EHBP1 (ENSAMEG00000005488) #11	OTX1 (ENSAMEG00000026277) #12	WDPCP (ENSAMEG00000005449) #13	MDH1 (ENSAMEG00000005414) #15	ENSAMEG00000027202	PELI1 (ENSAMEG00000001167) #18	LGALSL (ENSAMEG00000027975) #19	AFTPH (ENSAMEG00000001080) #20	SERTAD2 (ENSAMEG00000028964)	SLC1A4 (ENSAMEG00000001092) #22	CEP68 (ENSAMEG00000001121) #23	RAB1A (ENSAMEG00000026261) #24	ENSAMEG00000031136	ENSAMEG00000024763	ENSAMEG00000015749 #26	ENSAMEG00000015767 #27	ENSAMEG00000029782	MEIS1 (ENSAMEG00000015779) #28	ETAA1 (ENSAMEG00000015785) #29	C1D (ENSAMEG00000004859) #30	DNAAF10 (ENSAMEG00000004868) #31	PNO1 (ENSAMEG00000004897) #32	PPP3R1 (ENSAMEG00000027372) #33	CNRIP1 (ENSAMEG00000004912) #34	PLEK (ENSAMEG00000004920) #35
Mustelinae	ANCESTRAL SPECIES	16	ENSGT00940000157824	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000010591 #37	ENSGT00940000154544.a	ENSGT00950000183015.A
American mink	MODERN SPECIES	321																SLC1A4 (ENSNVIG00000003358) #22	CEP68 (ENSNVIG00000003250) #23	ENSNVIG00000003092	ENSNVIG00000003012	ACTR2 (ENSNVIG00000002887) #26	SPRE2 (ENSNVIG00000002729) #27	MEIS1 (ENSNVIG00000002418) #28
Felidae	ANCESTRAL SPECIES	3	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00960000190724	ENSGT00940000156841 #27	ENSGT00390000004856.w.a.a.b.b.a.b.b.a	ENSGT00950000183164.E.c.b.b	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000016292.i.a.f	ENSGT00390000015405.o.a #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000166021	ENSGT00940000163647
Panthera_a	ANCESTRAL SPECIES	1	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337.f #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000164277	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00390000004856.w.a.a.b.b.a.b.b.a	ENSGT00950000183164.E.c.b.b	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000016292.i.a.f	ENSGT00390000015405.o.a #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000163647	ENSGT00940000156530.c #33
lion	MODERN SPECIES	3	CCT4 (ENSPLOG00000000744) #7	ENSPLOG00000000693	COMMD1 (ENSPLOG00000000685) #8	B3GNT2 (ENSPLOG00000000672) #9	TMEM17 (ENSPLOG00000000647) #10	EHBP1 (ENSPLOG00000000545) #11	OTX1 (ENSPLOG00000000484) #12	WDPCP (ENSPLOG00000000468) #13	MDH1 (ENSPLOG00000000419) #15	UGP2 (ENSPLOG00000000363) #16	VPS54 (ENSPLOG00000000305) #17	PELI1 (ENSPLOG00000000230) #18	LGALSL (ENSPLOG00000000160) #19	AFTPH (ENSPLOG00000000129) #20	SERTAD2 (ENSPLOG00000000111)	SLC1A4 (ENSPLOG00000015581) #22	CEP68 (ENSPLOG00000015547) #23	RAB1A (ENSPLOG00000015420) #24	ENSPLOG00000015344	ACTR2 (ENSPLOG00000015113) #26	SPRED2 (ENSPLOG00000015039) #27	ENSPLOG00000015010	MEIS1 (ENSPLOG00000014760) #28	ETAA1 (ENSPLOG00000014630) #29	ENSPLOG00000014602	C1D (ENSPLOG00000014545) #30	DNAAF10 (ENSPLOG00000014401) #31	PNO1 (ENSPLOG00000014368) #32	ENSPLOG00000014345	PPP3R1 (ENSPLOG00000014231) #33	CNRIP1 (ENSPLOG00000014131) #34
leopard	MODERN SPECIES		COMMD1 (ENSPPRG00000024784) #8	B3GNT2 (ENSPPRG00000020752) #9	ENSPPRG00000024813	TMEM17 (ENSPPRG00000024820) #10	EHBP1 (ENSPPRG00000024840) #11	OTX1 (ENSPPRG00000024867) #12	WDPCP (ENSPPRG00000024890) #13	ENSPPRG00000024948 #15	UGP2 (ENSPPRG00000024974) #16	VPS54 (ENSPPRG00000025012) #17	PELI1 (ENSPPRG00000025026) #18	ENSPPRG00000025036 #19	AFTPH (ENSPPRG00000025039) #20	ENSPPRG00000025068 #21	SERTAD2 (ENSPPRG00000020703)	SLC1A4 (ENSPPRG00000025070) #22	CEP68 (ENSPPRG00000025073) #23	RAB1A (ENSPPRG00000025077) #24	ENSPPRG00000021550	ACTR2 (ENSPPRG00000020870) #26	SPRED2 (ENSPPRG00000020675) #27	ENSPPRG00000020632	ENSPPRG00000020658	MEIS1 (ENSPPRG00000018537) #28	ETAA1 (ENSPPRG00000017171) #29	ENSPPRG00000020640	ENSPPRG00000017045 #30	DNAAF10 (ENSPPRG00000015515) #31	PNO1 (ENSPPRG00000015494) #32	PPP3R1 (ENSPPRG00000015164) #33	ENSPPRG00000015005
Cat	MODERN SPECIES	2	FAM161A (ENSFCAG00000011118)	CCT4 (ENSFCAG00000024322) #7	COMMD1 (ENSFCAG00000027737) #8	B3GNT2 (ENSFCAG00000009061) #9	TMEM17 (ENSFCAG00000046240) #10	EHBP1 (ENSFCAG00000026831) #11	OTX1 (ENSFCAG00000044742) #12	WDPCP (ENSFCAG00000006657) #13	MDH1 (ENSFCAG00000024183) #15	UGP2 (ENSFCAG00000018580) #16	VPS54 (ENSFCAG00000008259) #17	PELI1 (ENSFCAG00000030163) #18	ENSFCAG00000045546 #19	AFTPH (ENSFCAG00000028719) #20	SERTAD2 (ENSFCAG00000002492)	SLC1A4 (ENSFCAG00000001506) #22	CEP68 (ENSFCAG00000030849) #23	RAB1A (ENSFCAG00000002536) #24	ENSFCAG00000014868	ACTR2 (ENSFCAG00000004960) #26	ENSFCAG00000051060	SPRED2 (ENSFCAG00000004962) #27	ENSFCAG00000028286	ENSFCAG00000037094	MEIS1 (ENSFCAG00000036549) #28	ETAA1 (ENSFCAG00000026219) #29	ENSFCAG00000028962	C1D (ENSFCAG00000028933) #30	DNAAF10 (ENSFCAG00000027122) #31	PNO1 (ENSFCAG00000041028) #32	PPP3R1 (ENSFCAG00000033294) #33
Laurasiatheria_c	ANCESTRAL SPECIES	14	ENSGT00940000157824	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544.a
Equus	ANCESTRAL SPECIES	7	ENSGT00940000157824	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544.a
Horse	MODERN SPECIES	6	ENSECAG00000060047	COMMD1 (ENSECAG00000016963) #8	B3GNT2 (ENSECAG00000016959) #9	ENSECAG00000032544	TMEM17 (ENSECAG00000015697) #10	EHBP1 (ENSECAG00000009318) #11	OTX1 (ENSECAG00000024462) #12	MDH1 (ENSECAG00000010849) #15	WDPCP (ENSECAG00000019956) #13	UGP2 (ENSECAG00000016705) #16	VPS54 (ENSECAG00000022920) #17	PELI1 (ENSECAG00000021804) #18	LGALSL (ENSECAG00000018099) #19	AFTPH (ENSECAG00000012175) #20	SERTAD2 (ENSECAG00000040555)	SLC1A4 (ENSECAG00000011229) #22	CEP68 (ENSECAG00000009985) #23	RAB1A (ENSECAG00000009926) #24	ACTR2 (ENSECAG00000009219) #26	SPRED2 (ENSECAG00000005881) #27	MEIS1 (ENSECAG00000009387) #28	ETAA1 (ENSECAG00000006358) #29	C1D (ENSECAG00000002187) #30	ENSECAG00000057082	PNO1 (ENSECAG00000011263) #32	PPP3R1 (ENSECAG00000009627) #33	PLEK (ENSECAG00000018996) #35	FBXO48 (ENSECAG00000018966) #36	APLF (ENSECAG00000013246) #37	ENSECAG00000028191	PROKR1 (ENSECAG00000031648)
Donkey	MODERN SPECIES	26	ENSEASG00005007233	ENSEASG00005007234	B3GNT2 (ENSEASG00005032411) #9	TMEM17 (ENSEASG00005031233) #10	EHBP1 (ENSEASG00005007241) #11	OTX1 (ENSEASG00005007243) #12	WDPCP (ENSEASG00005007245) #13	MDH1 (ENSEASG00005007262) #15	UGP2 (ENSEASG00005007264) #16	VPS54 (ENSEASG00005007268) #17	PELI1 (ENSEASG00005007279) #18	LGALSL (ENSEASG00005007283) #19	AFTPH (ENSEASG00005007290) #20	SERTAD2 (ENSEASG00005026993)	ENSEASG00005035148	SLC1A4 (ENSEASG00005007296) #22	CEP68 (ENSEASG00005007297) #23	RAB1A (ENSEASG00005034669) #24	ACTR2 (ENSEASG00005007299) #26	SPRED2 (ENSEASG00005027956) #27	MEIS1 (ENSEASG00005007304) #28	ETAA1 (ENSEASG00005007305) #29	C1D (ENSEASG00005033257) #30	DNAAF10 (ENSEASG00005007308) #31	PNO1 (ENSEASG00005007309) #32	ENSEASG00005007310 #33	CNRIP1 (ENSEASG00005030124) #34	PLEK (ENSEASG00005007312) #35	FBXO48 (ENSEASG00005007313) #36	APLF (ENSEASG00005007314) #37	PROKR1 (ENSEASG00005028856)
Chiroptera	ANCESTRAL SPECIES	10	ENSGT00940000157824	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544.a
Megabat	MODERN SPECIES	7272																SLC1A4 (ENSPVAG00000017084) #22
Microchiroptera	ANCESTRAL SPECIES	14	ENSGT00940000157824	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544.a
Microbat	MODERN SPECIES	943	CCT4 (ENSMLUG00000016138) #7	ENSMLUG00000022697 #8	B3GNT2 (ENSMLUG00000009924) #9	ENSMLUG00000027762	EHBP1 (ENSMLUG00000002314) #11	OTX1 (ENSMLUG00000002330) #12	WDPCP (ENSMLUG00000002336) #13	MDH1 (ENSMLUG00000002352) #15	UGP2 (ENSMLUG00000003123) #16	VPS54 (ENSMLUG00000003130) #17	PELI1 (ENSMLUG00000003152) #18	ENSMLUG00000015944	LGALSL (ENSMLUG00000008001) #19	AFTPH (ENSMLUG00000008012) #20	SERTAD2 (ENSMLUG00000013854)	SLC1A4 (ENSMLUG00000002430) #22	CEP68 (ENSMLUG00000002435) #23	RAB1A (ENSMLUG00000009489) #24	ACTR2 (ENSMLUG00000005227) #26	SPRED2 (ENSMLUG00000005236) #27
Greater horseshoe bat	MODERN SPECIES	4	B3GNT2 (ENSRFEG00010009289) #9	ENSRFEG00010009258	ENSRFEG00010009225	ENSRFEG00010009180	TMEM17 (ENSRFEG00010009150) #10	EHBP1 (ENSRFEG00010008993) #11	OTX1 (ENSRFEG00010008915) #12	WDPCP (ENSRFEG00010008801) #13	MDH1 (ENSRFEG00010008617) #15	UGP2 (ENSRFEG00010008438) #16	VPS54 (ENSRFEG00010008048) #17	PELI1 (ENSRFEG00010008007) #18	LGALSL (ENSRFEG00010007948) #19	AFTPH (ENSRFEG00010007890) #20	SERTAD2 (ENSRFEG00010007864)	SLC1A4 (ENSRFEG00010007793) #22	CEP68 (ENSRFEG00010007746) #23	RAB1A (ENSRFEG00010007659) #24	ENSRFEG00010007617	ACTR2 (ENSRFEG00010007536) #26	SPRED2 (ENSRFEG00010007454) #27	ENSRFEG00010007383	MEIS1 (ENSRFEG00010007165) #28	ETAA1 (ENSRFEG00010007107) #29	ENSRFEG00010007018 #30	DNAAF10 (ENSRFEG00010006949) #31	PNO1 (ENSRFEG00010006896) #32	PPP3R1 (ENSRFEG00010006792) #33	CNRIP1 (ENSRFEG00010006735) #34	PLEK (ENSRFEG00010006661) #35	FBXO48 (ENSRFEG00010006636) #36
Artiodactyla	ANCESTRAL SPECIES	16	ENSGT01000000221758	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00910000147214	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37
Suina	ANCESTRAL SPECIES	13	ENSGT00940000157824	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00910000147398	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37
Pig	MODERN SPECIES	11	COMMD1 (ENSSSCG00000008376) #8	B3GNT2 (ENSSSCG00000008374) #9	ENSSSCG00000028518	TMEM17 (ENSSSCG00000026713) #10	EHBP1 (ENSSSCG00000008372) #11	OTX1 (ENSSSCG00000037564) #12	ENSSSCG00000030195	WDPCP (ENSSSCG00000057114) #13	MDH1 (ENSSSCG00000025751) #15	UGP2 (ENSSSCG00000008368) #16	VPS54 (ENSSSCG00000027509) #17	PELI1 (ENSSSCG00000028947) #18	LGALSL (ENSSSCG00000030005) #19	AFTPH (ENSSSCG00000008363) #20	SERTAD2 (ENSSSCG00000037002)	SLC1A4 (ENSSSCG00000028282) #22	CEP68 (ENSSSCG00000008360) #23	RAB1A (ENSSSCG00000008359) #24	ACTR2 (ENSSSCG00000008358) #26	SPRED2 (ENSSSCG00000008357) #27	ENSSSCG00000044348	MEIS1 (ENSSSCG00000039161) #28	ETAA1 (ENSSSCG00000023908) #29	C1D (ENSSSCG00000039331) #30	DNAAF10 (ENSSSCG00000008353) #31	PNO1 (ENSSSCG00000008352) #32	PPP3R1 (ENSSSCG00000036115) #33	CNRIP1 (ENSSSCG00000008349) #34	PLEK (ENSSSCG00000008348) #35	FBXO48 (ENSSSCG00000008347) #36	APLF (ENSSSCG00000008346) #37
Chacoan peccary	MODERN SPECIES	777	CCT4 (ENSCWAG00000014318) #7	ENSCWAG00000014428 #8	B3GNT2 (ENSCWAG00000014453) #9	ENSCWAG00000014470	TMEM17 (ENSCWAG00000014499) #10	EHBP1 (ENSCWAG00000014544) #11	OTX1 (ENSCWAG00000014783) #12	ENSCWAG00000014828 #13	MDH1 (ENSCWAG00000014856) #15	UGP2 (ENSCWAG00000014887) #16	VPS54 (ENSCWAG00000015086) #17	PELI1 (ENSCWAG00000015638) #18	LGALSL (ENSCWAG00000015689) #19	AFTPH (ENSCWAG00000015787) #20	SERTAD2 (ENSCWAG00000015818)	SLC1A4 (ENSCWAG00000015836) #22	CEP68 (ENSCWAG00000015895) #23	RAB1A (ENSCWAG00000016000) #24	ENSCWAG00000016093	ACTR2 (ENSCWAG00000016124) #26	ENSCWAG00000016192	SPRED2 (ENSCWAG00000016216) #27	MEIS1 (ENSCWAG00000016382) #28	ETAA1 (ENSCWAG00000017059) #29	C1D (ENSCWAG00000017088) #30	DNAAF10 (ENSCWAG00000017128) #31	PNO1 (ENSCWAG00000017164) #32	PPP3R1 (ENSCWAG00000017182) #33	CNRIP1 (ENSCWAG00000017220) #34	PLEK (ENSCWAG00000017263) #35	FBXO48 (ENSCWAG00000017325) #36
Artiodactyla_a	ANCESTRAL SPECIES	15	ENSGT01000000221758	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00910000147214	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37
Artiodactyla_b	ANCESTRAL SPECIES	14	ENSGT01000000221758	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00910000147214	ENSGT00940000156841 #27	ENSGT00390000003682.gb.b	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36
Cetacea	ANCESTRAL SPECIES	16	ENSGT00940000157824	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B.i #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544.a
Odontoceti	ANCESTRAL SPECIES	15	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000168989	ENSGT00390000002738.a.e.a	ENSGT00940000153464.B.i #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00390000003682.gb.a.a.b	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37
Odontoceti_a	ANCESTRAL SPECIES	12	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a.l #15	ENSGT00940000168989	ENSGT00390000002738.a.e.a	ENSGT00940000153464.B.i #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00390000003682.gb.a.a.b	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37
Dolphin	MODERN SPECIES	3564																SLC1A4 (ENSTTRG00000008269) #22	CEP68 (ENSTTRG00000008277) #23	RAB1A (ENSTTRG00000008285) #24	ACTR2 (ENSTTRG00000008291) #26
Odontoceti_b	ANCESTRAL SPECIES	15	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a.l #15	ENSGT00940000168989	ENSGT00390000002738.a.e.a	ENSGT00940000153464.B.i #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00390000003682.gb.a.a.b.b	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37
Vaquita	MODERN SPECIES	4	ENSPSNG00000014227	B3GNT2 (ENSPSNG00000014249) #9	TMEM17 (ENSPSNG00000014288) #10	ENSPSNG00000014346	EHBP1 (ENSPSNG00000014468) #11	OTX1 (ENSPSNG00000014688) #12	WDPCP (ENSPSNG00000014770) #13	ENSPSNG00000015180	MDH1 (ENSPSNG00000015270) #15	ENSPSNG00000015479	VPS54 (ENSPSNG00000015574) #17	PELI1 (ENSPSNG00000016122) #18	LGALSL (ENSPSNG00000016184) #19	AFTPH (ENSPSNG00000016250) #20	SERTAD2 (ENSPSNG00000016327)	SLC1A4 (ENSPSNG00000016415) #22	CEP68 (ENSPSNG00000016545) #23	RAB1A (ENSPSNG00000016689) #24	ACTR2 (ENSPSNG00000016825) #26	SPRED2 (ENSPSNG00000016931) #27	ENSPSNG00000017076	MEIS1 (ENSPSNG00000017177) #28	ETAA1 (ENSPSNG00000017386) #29	C1D (ENSPSNG00000017424) #30	DNAAF10 (ENSPSNG00000017470) #31	PNO1 (ENSPSNG00000017552) #32	PPP3R1 (ENSPSNG00000017608) #33	CNRIP1 (ENSPSNG00000017800) #34	PLEK (ENSPSNG00000017885) #35	FBXO48 (ENSPSNG00000017972) #36	APLF (ENSPSNG00000018014) #37
Monodontidae	ANCESTRAL SPECIES	13	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00950000182802.A.ab.a.a.a.a.b.b.a	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a.l #15	ENSGT00390000002738.a.e.a	ENSGT00940000153464.B.i #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00390000003682.gb.a.a.b.b	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37
Beluga whale	MODERN SPECIES	42	B3GNT2 (ENSDLEG00000014023) #9	TMEM17 (ENSDLEG00000014013) #10	ENSDLEG00000014005	EHBP1 (ENSDLEG00000013833) #11	OTX1 (ENSDLEG00000013795) #12	WDPCP (ENSDLEG00000013723) #13	MDH1 (ENSDLEG00000013685) #15	ENSDLEG00000013659	UGP2 (ENSDLEG00000013637) #16	ENSDLEG00000013630	VPS54 (ENSDLEG00000013588) #17	PELI1 (ENSDLEG00000013564) #18	LGALSL (ENSDLEG00000013531) #19	AFTPH (ENSDLEG00000013504) #20	SERTAD2 (ENSDLEG00000013497)	SLC1A4 (ENSDLEG00000013482) #22	CEP68 (ENSDLEG00000013462) #23	RAB1A (ENSDLEG00000013451) #24	ACTR2 (ENSDLEG00000013424) #26	SPRED2 (ENSDLEG00000013406) #27	MEIS1 (ENSDLEG00000013356) #28	ETAA1 (ENSDLEG00000013344) #29	C1D (ENSDLEG00000013334) #30	WDR92 (ENSDLEG00000005842) #31	PNO1 (ENSDLEG00000005835) #32	PPP3R1 (ENSDLEG00000005831) #33	CNRIP1 (ENSDLEG00000005826) #34	PLEK (ENSDLEG00000005814) #35	FBXO48 (ENSDLEG00000005798) #36	APLF (ENSDLEG00000005776) #37	PROKR1 (ENSDLEG00000005769)
Narwhal	MODERN SPECIES	305	COMMD1 (ENSMMNG00015009232) #8	B3GNT2 (ENSMMNG00015009227) #9	TMEM17 (ENSMMNG00015009216) #10	ENSMMNG00015009209	EHBP1 (ENSMMNG00015009174) #11	OTX1 (ENSMMNG00015009119) #12	WDPCP (ENSMMNG00015009094) #13	ENSMMNG00015009066 #15	PHPT1 (ENSMMNG00015009040)	ENSMMNG00015009005 #16	VPS54 (ENSMMNG00015016195) #17	PELI1 (ENSMMNG00015016144) #18	LGALSL (ENSMMNG00015016100) #19	AFTPH (ENSMMNG00015016029) #20	SERTAD2 (ENSMMNG00015016005)	SLC1A4 (ENSMMNG00015015960) #22	CEP68 (ENSMMNG00015015909) #23	RAB1A (ENSMMNG00015015848) #24	ACTR2 (ENSMMNG00015015753) #26	SPRED2 (ENSMMNG00015015689) #27	ENSMMNG00015015655	MEIS1 (ENSMMNG00015015523) #28	ETAA1 (ENSMMNG00015015495) #29	C1D (ENSMMNG00015015470) #30	DNAAF10 (ENSMMNG00015015443) #31	PNO1 (ENSMMNG00015015433) #32	PPP3R1 (ENSMMNG00015015405) #33	CNRIP1 (ENSMMNG00015015380) #34	PLEK (ENSMMNG00015015351) #35	FBXO48 (ENSMMNG00015015325) #36	APLF (ENSMMNG00015015298) #37
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	3	COMMD1 (ENSPCTG00005006502) #8	B3GNT2 (ENSPCTG00005006518) #9	TMEM17 (ENSPCTG00005006531) #10	EHBP1 (ENSPCTG00005006603) #11	OTX1 (ENSPCTG00005006769) #12	WDPCP (ENSPCTG00005006829) #13	MDH1 (ENSPCTG00005007119) #15	ENSPCTG00005007304	UGP2 (ENSPCTG00005007338) #16	VPS54 (ENSPCTG00005007443) #17	PELI1 (ENSPCTG00005007650) #18	ENSPCTG00005007660	LGALSL (ENSPCTG00005007670) #19	AFTPH (ENSPCTG00005007713) #20	SERTAD2 (ENSPCTG00005007784)	ENSPCTG00005007798 #22	CEP68 (ENSPCTG00005007824) #23	RAB1A (ENSPCTG00005007858) #24	ACTR2 (ENSPCTG00005007920) #26	SPRED2 (ENSPCTG00005008031) #27	ENSPCTG00005008120	ENSPCTG00005008130	MEIS1 (ENSPCTG00005008167) #28	ETAA1 (ENSPCTG00005008337) #29	C1D (ENSPCTG00005008403) #30	ENSPCTG00005008480	WDR92 (ENSPCTG00005008494) #31	PNO1 (ENSPCTG00005008568) #32	PPP3R1 (ENSPCTG00005008639) #33	CNRIP1 (ENSPCTG00005008746) #34	PLEK (ENSPCTG00005008806) #35
Sperm whale	MODERN SPECIES	659																ENSPCTG00005013406 #22
Blue whale	MODERN SPECIES	4	COMMD1 (ENSBMSG00010017362) #8	ENSBMSG00010017350	B3GNT2 (ENSBMSG00010017335) #9	TMEM17 (ENSBMSG00010017316) #10	EHBP1 (ENSBMSG00010016917) #11	OTX1 (ENSBMSG00010016810) #12	WDPCP (ENSBMSG00010016471) #13	MDH1 (ENSBMSG00010016335) #15	ENSBMSG00010016142 #16	VPS54 (ENSBMSG00010015929) #17	PELI1 (ENSBMSG00010015886) #18	LGALSL (ENSBMSG00010015854) #19	ENSBMSG00010015828	AFTPH (ENSBMSG00010015789) #20	SERTAD2 (ENSBMSG00010015761)	ENSBMSG00010015739 #22	CEP68 (ENSBMSG00010015630) #23	RAB1A (ENSBMSG00010015536) #24	ACTR2 (ENSBMSG00010015452) #26	ENSBMSG00010015420	SPRED2 (ENSBMSG00010015313) #27	MEIS1 (ENSBMSG00010014951) #28	ETAA1 (ENSBMSG00010014898) #29	C1D (ENSBMSG00010014843) #30	DNAAF10 (ENSBMSG00010014807) #31	PNO1 (ENSBMSG00010014773) #32	PPP3R1 (ENSBMSG00010014702) #33	CNRIP1 (ENSBMSG00010014640) #34	PLEK (ENSBMSG00010014580) #35	FBXO48 (ENSBMSG00010014557) #36	APLF (ENSBMSG00010014533) #37
Pecora	ANCESTRAL SPECIES	5	ENSGT01000000221758	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00910000147214	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37
Yarkand deer	MODERN SPECIES	2	OTX1 (ENSCHYG00000006734) #12	WDPCP (ENSCHYG00000006760) #13	ENSCHYG00000006867	MDH1 (ENSCHYG00000006887) #15	ENSCHYG00000007056	UGP2 (ENSCHYG00000007083) #16	VPS54 (ENSCHYG00000007200) #17	ENSCHYG00000007473	PELI1 (ENSCHYG00000007493) #18	ENSCHYG00000007544	LGALSL (ENSCHYG00000007576) #19	AFTPH (ENSCHYG00000007630) #20	ENSCHYG00000007734	SERTAD2 (ENSCHYG00000007769)	ENSCHYG00000007790	SLC1A4 (ENSCHYG00000007819) #22	CEP68 (ENSCHYG00000007916) #23	RAB1A (ENSCHYG00000007988) #24	ACTR2 (ENSCHYG00000008112) #26	SPRED2 (ENSCHYG00000008346) #27	ENSCHYG00000008453	MEIS1 (ENSCHYG00000008476) #28	ETAA1 (ENSCHYG00000008673) #29	C1D (ENSCHYG00000008709) #30	ENSCHYG00000008783 #31	PNO1 (ENSCHYG00000009166) #32	CNRIP1 (ENSCHYG00000009217) #34	PLEK (ENSCHYG00000009350) #35	FBXO48 (ENSCHYG00000009420) #36	ENSCHYG00000009477 #37	PROKR1 (ENSCHYG00000009894)
Percora_a	ANCESTRAL SPECIES	13	ENSGT01000000221758	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00910000147214	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37
Siberian musk deer	MODERN SPECIES	240	COMMD1 (ENSMMSG00000008325) #8	B3GNT2 (ENSMMSG00000008312) #9	ENSMMSG00000008292	TMEM17 (ENSMMSG00000008258) #10	EHBP1 (ENSMMSG00000008127) #11	OTX1 (ENSMMSG00000008093) #12	WDPCP (ENSMMSG00000008007) #13	MDH1 (ENSMMSG00000007784) #15	UGP2 (ENSMMSG00000007620) #16	VPS54 (ENSMMSG00000007345) #17	PELI1 (ENSMMSG00000007255) #18	LGALSL (ENSMMSG00000007219) #19	AFTPH (ENSMMSG00000007162) #20	SERTAD2 (ENSMMSG00000007146)	ENSMMSG00000007124	SLC1A4 (ENSMMSG00000007010) #22	CEP68 (ENSMMSG00000006928) #23	RAB1A (ENSMMSG00000006809) #24	ENSMMSG00000006773	ACTR2 (ENSMMSG00000006727) #26	SPRED2 (ENSMMSG00000006652) #27	MEIS1 (ENSMMSG00000006369) #28	ETAA1 (ENSMMSG00000006322) #29	ENSMMSG00000006311	ENSMMSG00000006279	C1D (ENSMMSG00000011514) #30	DNAAF10 (ENSMMSG00000011471) #31	PNO1 (ENSMMSG00000011455) #32	ENSMMSG00000011434	ENSMMSG00000011356 #33	CNRIP1 (ENSMMSG00000011305) #34
Bovidae	ANCESTRAL SPECIES	5	ENSGT01000000221758	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00910000147214	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37
Caprinae	ANCESTRAL SPECIES	9	ENSGT00960000190232	ENSGT00940000157824	ENSGT00550000074956.w #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a.i #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337.h #19	ENSGT00940000154186.a #20	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00910000147214	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37
Rambouillet Sheep	MODERN SPECIES	19	ENSOARG00020001479 #7	COMMD1 (ENSOARG00020001461) #8	B3GNT2 (ENSOARG00020001451) #9	TMEM17 (ENSOARG00020001441) #10	EHBP1 (ENSOARG00020001291) #11	OTX1 (ENSOARG00020001249) #12	WDPCP (ENSOARG00020001233) #13	MDH1 (ENSOARG00020001156) #15	UGP2 (ENSOARG00020001100) #16	VPS54 (ENSOARG00020000984) #17	ENSOARG00020000952	PELI1 (ENSOARG00020000937) #18	LGALSL (ENSOARG00020000922) #19	SERTAD2 (ENSOARG00020000894)	ENSOARG00020000886	SLC1A4 (ENSOARG00020000870) #22	RAB1A (ENSOARG00020000781) #24	ENSOARG00020000747	ACTR2 (ENSOARG00020000701) #26	SPRED2 (ENSOARG00020000634) #27	ENSOARG00020000610	MEIS1 (ENSOARG00020000528) #28	ETAA1 (ENSOARG00020000471) #29	C1D (ENSOARG00020000448) #30	DNAAF10 (ENSOARG00020000424) #31	PNO1 (ENSOARG00020000405) #32	PPP3R1 (ENSOARG00020000338) #33	CNRIP1 (ENSOARG00020000300) #34	PLEK (ENSOARG00020000213) #35	FBXO48 (ENSOARG00020007981) #36	PROKR1 (ENSOARG00020007957)
Goat	MODERN SPECIES	2	ENSCHIG00000014125 #7	COMMD1 (ENSCHIG00000017790) #8	B3GNT2 (ENSCHIG00000009561) #9	TMEM17 (ENSCHIG00000012499) #10	EHBP1 (ENSCHIG00000013762) #11	OTX1 (ENSCHIG00000017955) #12	WDPCP (ENSCHIG00000018963) #13	ENSCHIG00000015525 #15	UGP2 (ENSCHIG00000021810) #16	VPS54 (ENSCHIG00000010990) #17	ENSCHIG00000003100	PELI1 (ENSCHIG00000022027) #18	LGALSL (ENSCHIG00000026638) #19	AFTPH (ENSCHIG00000009404) #20	ENSCHIG00000007620	SLC1A4 (ENSCHIG00000025336) #22	CEP68 (ENSCHIG00000025433) #23	RAB1A (ENSCHIG00000014060) #24	ACTR2 (ENSCHIG00000014272) #26	ENSCHIG00000027162	SPRED2 (ENSCHIG00000013086) #27	MEIS1 (ENSCHIG00000027207) #28	ETAA1 (ENSCHIG00000027011) #29	C1D (ENSCHIG00000025729) #30	DNAAF10 (ENSCHIG00000022762) #31	PNO1 (ENSCHIG00000012839) #32	PPP3R1 (ENSCHIG00000004688) #33	CNRIP1 (ENSCHIG00000017116) #34	PLEK (ENSCHIG00000017674) #35	FBXO48 (ENSCHIG00000018110) #36	APLF (ENSCHIG00000015145) #37
Bovinae	ANCESTRAL SPECIES	4	ENSGT01000000221758	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544.a
Bos	ANCESTRAL SPECIES	5	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00390000011179.o.a	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556.ib #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544.a
Bos_a	ANCESTRAL SPECIES	6	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00390000011179.o.a	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556.ib #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544.a
Wild yak	MODERN SPECIES	577																SLC1A4 (ENSBMUG00000019988) #22	CEP68 (ENSBMUG00000020034) #23	RAB1A (ENSBMUG00000020049) #24	ENSBMUG00000020074 #26	SPRED2 (ENSBMUG00000020108) #27	MEIS1 (ENSBMUG00000020154) #28	ETAA1 (ENSBMUG00000020179) #29	C1D (ENSBMUG00000020190) #30	DNAAF10 (ENSBMUG00000020199) #31
Domestic yak	MODERN SPECIES	28	B3GNT2 (ENSBGRG00000009630) #9	EHBP1 (ENSBGRG00000009676) #11	TMEM17 (ENSBGRG00000009894) #10	ENSBGRG00000009929	OTX1 (ENSBGRG00000009943) #12	WDPCP (ENSBGRG00000009982) #13	MRPS24 (ENSBGRG00000010129)	MDH1 (ENSBGRG00000010198) #15	ENSBGRG00000010353	UGP2 (ENSBGRG00000010367) #16	VPS54 (ENSBGRG00000010687) #17	PELI1 (ENSBGRG00000011236) #18	ENSBGRG00000011374 #19	AFTPH (ENSBGRG00000011500) #20	SERTAD2 (ENSBGRG00000011678)	SLC1A4 (ENSBGRG00000011713) #22	CEP68 (ENSBGRG00000011823) #23	RAB1A (ENSBGRG00000012081) #24	ACTR2 (ENSBGRG00000012280) #26	SPRED2 (ENSBGRG00000012585) #27	MEIS1 (ENSBGRG00000012913) #28	ENSBGRG00000013128	ETAA1 (ENSBGRG00000013146) #29	ENSBGRG00000013266	C1D (ENSBGRG00000013288) #30	DNAAF10 (ENSBGRG00000013337) #31	PNO1 (ENSBGRG00000003558) #32	CNRIP1 (ENSBGRG00000003591) #34	PLEK (ENSBGRG00000003648) #35	FBXO48 (ENSBGRG00000003679) #36	APLF (ENSBGRG00000003735) #37
Bos_b	ANCESTRAL SPECIES	16	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00390000011179.o.a	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556.ib #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544.a
Cow	MODERN SPECIES	2	B3GNT2 (ENSBTAG00000018046) #9	TMEM17 (ENSBTAG00000000899) #10	EHBP1 (ENSBTAG00000044173) #11	OTX1 (ENSBTAG00000006760) #12	WDPCP (ENSBTAG00000005151) #13	ENSBTAG00000023318	MDH1 (ENSBTAG00000019295) #15	UGP2 (ENSBTAG00000000111) #16	VPS54 (ENSBTAG00000000115) #17	PELI1 (ENSBTAG00000020865) #18	ENSBTAG00000053585	LGALSL (ENSBTAG00000055296) #19	AFTPH (ENSBTAG00000009299) #20	SERTAD2 (ENSBTAG00000049341)	ENSBTAG00000050435	SLC1A4 (ENSBTAG00000007763) #22	CEP68 (ENSBTAG00000016717) #23	RAB1A (ENSBTAG00000016720) #24	ACTR2 (ENSBTAG00000009761) #26	SPRED2 (ENSBTAG00000019456) #27	MEIS1 (ENSBTAG00000008448) #28	ETAA1 (ENSBTAG00000011727) #29	C1D (ENSBTAG00000049002) #30	DNAAF10 (ENSBTAG00000010595) #31	PNO1 (ENSBTAG00000010604) #32	PPP3R1 (ENSBTAG00000010619) #33	CNRIP1 (ENSBTAG00000001408) #34	PLEK (ENSBTAG00000009658) #35	FBXO48 (ENSBTAG00000047772) #36	APLF (ENSBTAG00000018401) #37	PROKR1 (ENSBTAG00000050333)
Hybrid Bos Indicus	MODERN SPECIES	2	TMEM17 (ENSBIXG00005000490) #10	EHBP1 (ENSBIXG00005000484) #11	ENSBIXG00005005799	OTX1 (ENSBIXG00005009282) #12	WDPCP (ENSBIXG00005009244) #13	MRPS24 (ENSBIXG00005000425)	MDH1 (ENSBIXG00005009206) #15	UGP2 (ENSBIXG00005009159) #16	VPS54 (ENSBIXG00005009062) #17	PELI1 (ENSBIXG00005008978) #18	ENSBIXG00005008944 #19	AFTPH (ENSBIXG00005008912) #20	SERTAD2 (ENSBIXG00005008870)	RAB1A (ENSBIXG00005000282) #24	ENSBIXG00005008797	SLC1A4 (ENSBIXG00005008778) #22	CEP68 (ENSBIXG00005006085) #23	ACTR2 (ENSBIXG00005008678) #26	SPRED2 (ENSBIXG00005000234) #27	MEIS1 (ENSBIXG00005000216) #28	ETAA1 (ENSBIXG00005008485) #29	C1D (ENSBIXG00005000197) #30	DNAAF10 (ENSBIXG00005008434) #31	PNO1 (ENSBIXG00005000175) #32	ENSBIXG00005000174 #34	ENSBIXG00005008358	PLEK (ENSBIXG00005008346) #35	FBXO48 (ENSBIXG00005008327) #36	APLF (ENSBIXG00005008315) #37	ENSBIXG00005008303	PROKR1 (ENSBIXG00005008293)
American bison	MODERN SPECIES	3346	FAM161A (ENSBBBG00000016265)	CCT4 (ENSBBBG00000016241) #7	COMMD1 (ENSBBBG00000016189) #8	B3GNT2 (ENSBBBG00000000770) #9	ENSBBBG00000016179	TMEM17 (ENSBBBG00000016175) #10	EHBP1 (ENSBBBG00000016143) #11	OTX1 (ENSBBBG00000015949) #12	WDPCP (ENSBBBG00000015935) #13	MDH1 (ENSBBBG00000015910) #15	UGP2 (ENSBBBG00000015846) #16	VPS54 (ENSBBBG00000015810) #17	PELI1 (ENSBBBG00000015700) #18	LGALSL (ENSBBBG00000003917) #19	AFTPH (ENSBBBG00000015672) #20	SLC1A4 (ENSBBBG00000003906) #22	CEP68 (ENSBBBG00000015639) #23	RAB1A (ENSBBBG00000015620) #24	ENSBBBG00000003899 #26	SPRED2 (ENSBBBG00000003896) #27	MEIS1 (ENSBBBG00000000788) #28
Camelidae	ANCESTRAL SPECIES	12	ENSGT00940000157824	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544.a
Alpaca	MODERN SPECIES	3693																SLC1A4 (ENSVPAG00000005637) #22	ENSVPAG00000005638 #23	RAB1A (ENSVPAG00000005640) #24
Arabian camel	MODERN SPECIES	6	FAM161A (ENSCDRG00005004663)	CCT4 (ENSCDRG00005004760) #7	COMMD1 (ENSCDRG00005004907) #8	B3GNT2 (ENSCDRG00005004917) #9	TMEM17 (ENSCDRG00005004930) #10	ENSCDRG00005004963	EHBP1 (ENSCDRG00005004989) #11	OTX1 (ENSCDRG00005005204) #12	WDPCP (ENSCDRG00005005228) #13	MDH1 (ENSCDRG00005005489) #15	UGP2 (ENSCDRG00005005735) #16	VPS54 (ENSCDRG00005005842) #17	PELI1 (ENSCDRG00005006069) #18	LGALSL (ENSCDRG00005006106) #19	AFTPH (ENSCDRG00005006174) #20	SLC1A4 (ENSCDRG00005006273) #22	CEP68 (ENSCDRG00005006344) #23	RAB1A (ENSCDRG00005006403) #24	ACTR2 (ENSCDRG00005006571) #26	SPRED2 (ENSCDRG00005006696) #27	MEIS1 (ENSCDRG00005006803) #28	ENSCDRG00005007509	ETAA1 (ENSCDRG00005007526) #29	C1D (ENSCDRG00005007559) #30	DNAAF10 (ENSCDRG00005007600) #31	PNO1 (ENSCDRG00005007641) #32	PPP3R1 (ENSCDRG00005007714) #33	CNRIP1 (ENSCDRG00005007885) #34	PLEK (ENSCDRG00005007914) #35	FBXO48 (ENSCDRG00005007956) #36	APLF (ENSCDRG00005007995) #37
Eulipotyphla	ANCESTRAL SPECIES	548																ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24
Common shrew	MODERN SPECIES	1220																SLC1A4 (ENSSARG00000009161) #22
Hedgehog	MODERN SPECIES	823																SLC1A4 (ENSEEUG00000011445) #22	CEP68 (ENSEEUG00000011547) #23	RAB1A (ENSEEUG00000011721) #24
Euarchontoglires	ANCESTRAL SPECIES	15	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00910000147398	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37
Primates	ANCESTRAL SPECIES	14	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a.h #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00390000001858 #21	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00910000147398	ENSGT00940000156841 #27	ENSGT00390000003682.ib.a	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36
Haplorrhini	ANCESTRAL SPECIES	15	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a.h #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00390000001858 #21	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00910000147398	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37
Simiiformes	ANCESTRAL SPECIES	14	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a.h #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00390000001858 #21	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958.lb.a #24	ENSGT00940000154556 #26	ENSGT00910000147214	ENSGT00940000156841 #27	ENSGT00390000003682.ib.a.a.b	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405.s #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052.l #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36
Catarrhini	ANCESTRAL SPECIES	17	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a.h #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958.lb.a #24	ENSGT00940000154556.tb.a #26	ENSGT00910000147214	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405.s #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052.l #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37
Hominoidea	ANCESTRAL SPECIES	18	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a.h #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00950000182901.a.a.a.b.b	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958.lb.a #24	ENSGT00940000154556.tb.a #26	ENSGT00910000147214	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405.s #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052.l #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37
Hominidae	ANCESTRAL SPECIES	19	ENSGT00950000183099.u.a.d.b.c.a.b.b	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a.h #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00950000182901.a.a.a.b.b	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958.lb.a #24	ENSGT00940000154556.tb.a #26	ENSGT00910000147214	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405.s #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052.l #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37
Orangutan	MODERN SPECIES	14	ENSPPYG00000019018	B3GNT2 (ENSPPYG00000012379) #9	TMEM17 (ENSPPYG00000012378) #10	EHBP1 (ENSPPYG00000012377) #11	ENSPPYG00000030010	OTX1 (ENSPPYG00000012376) #12	WDPCP (ENSPPYG00000012374) #13	MDH1 (ENSPPYG00000012373) #15	UGP2 (ENSPPYG00000012371) #16	VPS54 (ENSPPYG00000012370) #17	PELI1 (ENSPPYG00000012369) #18	LGALSL (ENSPPYG00000012366) #19	ENSPPYG00000012365 #21	AFTPH (ENSPPYG00000012364) #20	SERTAD2 (ENSPPYG00000035823)	SLC1A4 (ENSPPYG00000041756) #22	CEP68 (ENSPPYG00000012361) #23	RAB1A (ENSPPYG00000012360) #24	ACTR2 (ENSPPYG00000012359) #26	SPRED2 (ENSPPYG00000012358) #27	ENSPPYG00000012356 #28	ETAA1 (ENSPPYG00000012355) #29	C1D (ENSPPYG00000012354) #30	DNAAF10 (ENSPPYG00000012352) #31	PNO1 (ENSPPYG00000033861) #32	PPP3R1 (ENSPPYG00000031425) #33	CNRIP1 (ENSPPYG00000012351) #34	PLEK (ENSPPYG00000040535) #35	FBXO48 (ENSPPYG00000012736) #36	APLF (ENSPPYG00000012348) #37	PROKR1 (ENSPPYG00000012347)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	18	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a.h #15	ENSGT00390000010721.a.a.a.b	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00950000182901.a.a.a.b.b	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958.lb.a #24	ENSGT00940000154556.tb.a.a.a #26	ENSGT00910000147214	ENSGT00940000154556.tb.a.b #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405.s.a #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052.l #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885.k #35	ENSGT00390000012248 #36
Gorilla	MODERN SPECIES	14	RPSA (ENSGGOG00000026707)	B3GNT2 (ENSGGOG00000025266) #9	ENSGGOG00000038261	EHBP1 (ENSGGOG00000034917) #11	OTX1 (ENSGGOG00000015410) #12	WDPCP (ENSGGOG00000011930) #13	MDH1 (ENSGGOG00000007085) #15	ENSGGOG00000036456	UGP2 (ENSGGOG00000006283) #16	VPS54 (ENSGGOG00000006294) #17	PELI1 (ENSGGOG00000013460) #18	ENSGGOG00000022216	LGALSL (ENSGGOG00000006386) #19	ENSGGOG00000023155 #21	AFTPH (ENSGGOG00000008449) #20	SLC1A4 (ENSGGOG00000011211) #22	CEP68 (ENSGGOG00000005826) #23	RAB1A (ENSGGOG00000026603) #24	ENSGGOG00000008505 #26	ENSGGOG00000041600	SPRED2 (ENSGGOG00000007267) #27	ENSGGOG00000005446 #28	ETAA1 (ENSGGOG00000014411) #29	ENSGGOG00000025982 #30	ENSGGOG00000023297	DNAAF10 (ENSGGOG00000010285) #31	PNO1 (ENSGGOG00000009158) #32	PPP3R1 (ENSGGOG00000039766) #33	CNRIP1 (ENSGGOG00000022874) #34	ENSGGOG00000005831 #35	PLEK (ENSGGOG00000026840) #35
Homo/Pan group	ANCESTRAL SPECIES	14	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a.h #15	ENSGT00390000010721.a.a.a.b	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958.lb.a #24	ENSGT00940000154556.tb.a.a.a #26	ENSGT00910000147214	ENSGT00940000154556.tb.a.b #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405.s.a #30	ENSGT00950000183091.A.b #31	ENSGT00390000004284 #34	ENSGT00940000157885.k #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000164467.d.b.b.b
Human	MODERN SPECIES	11	FAM161A (ENSG00000170264)	CCT4 (ENSG00000115484) #7	COMMD1 (ENSG00000173163) #8	B3GNT2 (ENSG00000170340) #9	TMEM17 (ENSG00000186889) #10	EHBP1 (ENSG00000115504) #11	OTX1 (ENSG00000115507) #12	WDPCP (ENSG00000143951) #13	MDH1 (ENSG00000014641) #15	UGP2 (ENSG00000169764) #16	VPS54 (ENSG00000143952) #17	PELI1 (ENSG00000197329) #18	LGALSL (ENSG00000119862) #19	AFTPH (ENSG00000119844) #20	SERTAD2 (ENSG00000179833)	SLC1A4 (ENSG00000115902) #22	CEP68 (ENSG00000011523) #23	RAB1A (ENSG00000138069) #24	ACTR2 (ENSG00000138071) #26	SPRED2 (ENSG00000198369) #27	MEIS1 (ENSG00000143995) #28	ETAA1 (ENSG00000143971) #29	C1D (ENSG00000197223) #30	DNAAF10 (ENSG00000243667) #31	PNO1 (ENSG00000115946) #32	PPP3R1 (ENSG00000221823) #33	CNRIP1 (ENSG00000119865) #34	PLEK (ENSG00000115956) #35	FBXO48 (ENSG00000204923) #36	APLF (ENSG00000169621) #37	PROKR1 (ENSG00000169618)
Pan	ANCESTRAL SPECIES	17	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a.h #15	ENSGT00390000010721.a.a.a.b	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958.lb.a #24	ENSGT00940000154556.tb.a.a.a #26	ENSGT00910000147214	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405.s.a #30	ENSGT00390000015405.s.b #30	ENSGT00390000018052.l #32	ENSGT00950000183091.A.b #31	ENSGT00390000004284 #34	ENSGT00940000157885.k #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37
Chimpanzee	MODERN SPECIES	14	B3GNT2 (ENSPTRG00000051560) #9	TMEM17 (ENSPTRG00000011968) #10	EHBP1 (ENSPTRG00000011969) #11	OTX1 (ENSPTRG00000011972) #12	WDPCP (ENSPTRG00000024270) #13	MDH1 (ENSPTRG00000011974) #15	ENSPTRG00000046466	ENSPTRG00000048626	UGP2 (ENSPTRG00000011976) #16	VPS54 (ENSPTRG00000011978) #17	PELI1 (ENSPTRG00000023869) #18	LGALSL (ENSPTRG00000047293) #19	AFTPH (ENSPTRG00000011983) #20	ENSPTRG00000045952 #21	SERTAD2 (ENSPTRG00000030469)	SLC1A4 (ENSPTRG00000011985) #22	CEP68 (ENSPTRG00000011988) #23	RAB1A (ENSPTRG00000011989) #24	ENSPTRG00000011990 #26	ENSPTRG00000047998	SPRED2 (ENSPTRG00000011992) #27	MEIS1 (ENSPTRG00000011994) #28	ETAA1 (ENSPTRG00000011996) #29	C1D (ENSPTRG00000023558) #30	ENSPTRG00000041941 #31	PNO1 (ENSPTRG00000011999) #32	CNRIP1 (ENSPTRG00000012002) #34	PLEK (ENSPTRG00000012003) #35	FBXO48 (ENSPTRG00000030457) #36	APLF (ENSPTRG00000012004) #37	ENSPTRG00000047822
Gibbon	MODERN SPECIES	4	TMEM17 (ENSNLEG00000009759) #10	EHBP1 (ENSNLEG00000009764) #11	ENSNLEG00000027460	OTX1 (ENSNLEG00000009808) #12	WDPCP (ENSNLEG00000009810) #13	MDH1 (ENSNLEG00000009823) #15	ENSNLEG00000035245	UGP2 (ENSNLEG00000031494) #16	VPS54 (ENSNLEG00000009859) #17	PELI1 (ENSNLEG00000009891) #18	ENSNLEG00000028443	LGALSL (ENSNLEG00000031680) #19	AFTPH (ENSNLEG00000009902) #20	ENSNLEG00000009923 #21	SERTAD2 (ENSNLEG00000029151)	SLC1A4 (ENSNLEG00000009927) #22	ENSNLEG00000009939 #23	RAB1A (ENSNLEG00000009944) #24	ACTR2 (ENSNLEG00000009948) #26	SPRED2 (ENSNLEG00000009959) #27	ENSNLEG00000027615	ENSNLEG00000009963 #28	ETAA1 (ENSNLEG00000009972) #29	ENSNLEG00000032919 #30	DNAAF10 (ENSNLEG00000030882) #31	PNO1 (ENSNLEG00000034233) #32	PPP3R1 (ENSNLEG00000026538) #33	CNRIP1 (ENSNLEG00000009999) #34	PLEK (ENSNLEG00000010002) #35	FBXO48 (ENSNLEG00000010016) #36	APLF (ENSNLEG00000010019) #37
Cercopithecidae	ANCESTRAL SPECIES	18	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a.h #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958.lb.a #24	ENSGT00940000154958.mb #24	ENSGT00940000154556.tb.a #26	ENSGT00910000147398	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405.s #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052.l #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36
Rhinopithecus	ANCESTRAL SPECIES	395											ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00390000001858 #21	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958.mb #24	ENSGT00940000155078.a.b.a.b	ENSGT00940000154556.tb.a #26	ENSGT00910000147398	ENSGT00940000156841 #27	ENSGT00940000156327 #28
Golden snub-nosed monkey	MODERN SPECIES	3026													ENSRROG00000038317 #20	SERTAD2 (ENSRROG00000026882)	ENSRROG00000042327	SLC1A4 (ENSRROG00000032007) #22	CEP68 (ENSRROG00000030391) #23	ENSRROG00000044448 #24	ACTR2 (ENSRROG00000043956) #26	ENSRROG00000040495	SPRED2 (ENSRROG00000031997) #27	MEIS1 (ENSRROG00000036544) #28
Cercopithecinae	ANCESTRAL SPECIES	17	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00950000182995.e.a.a.a.bb.b	ENSGT00390000016551 #13	ENSGT00530000063410.a.h #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958.lb.a #24	ENSGT00940000154958.mb #24	ENSGT00940000154556.tb.a #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405.s #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052.l.b #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37
Cercopithecinae_a	ANCESTRAL SPECIES	17	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00950000182995.e.a.a.a.bb.b	ENSGT00390000016551 #13	ENSGT00530000063410.a.h #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958.lb.a #24	ENSGT00940000154556.tb.a #26	ENSGT00940000156841 #27	ENSGT00910000147398	ENSGT00940000155590.g.b	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000010283.ab.a	ENSGT00390000015405.s #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052.l.b #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35
Macaca_a	ANCESTRAL SPECIES	15	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00950000182995.e.a.a.a.bb.b	ENSGT00390000016551 #13	ENSGT00530000063410.a.h #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00390000001858 #21	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958.lb.a.a #24	ENSGT00940000154556.tb.a #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405.s.c #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052.l.b #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544.a
Crab-eating macaque	MODERN SPECIES	4	MDH1 (ENSMFAG00000042090) #15	ENSMFAG00000059450	ENSMFAG00000056658	UGP2 (ENSMFAG00000035944) #16	VPS54 (ENSMFAG00000042525) #17	PELI1 (ENSMFAG00000045683) #18	ENSMFAG00000054126	ENSMFAG00000031922 #19	ENSMFAG00000035379 #21	AFTPH (ENSMFAG00000041331) #20	ENSMFAG00000002213	ENSMFAG00000061518	SERTAD2 (ENSMFAG00000037664)	ENSMFAG00000062833	ENSMFAG00000053049	SLC1A4 (ENSMFAG00000003847) #22	CEP68 (ENSMFAG00000041409) #23	ENSMFAG00000049291	ENSMFAG00000064674	ENSMFAG00000046246 #24	ENSMFAG00000061807	ACTR2 (ENSMFAG00000044097) #26	SPRED2 (ENSMFAG00000031151) #27	MEIS1 (ENSMFAG00000042877) #28	ETAA1 (ENSMFAG00000039723) #29	ENSMFAG00000056299	ENSMFAG00000034261 #30	DNAAF10 (ENSMFAG00000042360) #31	ENSMFAG00000064848	PNO1 (ENSMFAG00000043544) #32	PPP3R1 (ENSMFAG00000031560) #33
Rhesus	MODERN SPECIES	4	TMEM17 (ENSMMUG00000057986) #10	EHBP1 (ENSMMUG00000016668) #11	OTX1 (ENSMMUG00000051405) #12	ENSMMUG00000030822	WDPCP (ENSMMUG00000003979) #13	MDH1 (ENSMMUG00000006163) #15	ENSMMUG00000060943	UGP2 (ENSMMUG00000008770) #16	VPS54 (ENSMMUG00000008772) #17	PELI1 (ENSMMUG00000059267) #18	LGALSL (ENSMMUG00000064711) #19	ENSMMUG00000006504 #21	AFTPH (ENSMMUG00000006503) #20	ENSMMUG00000014862	SERTAD2 (ENSMMUG00000047067)	SLC1A4 (ENSMMUG00000010279) #22	CEP68 (ENSMMUG00000017019) #23	RAB1A (ENSMMUG00000021721) #24	ACTR2 (ENSMMUG00000002263) #26	SPRED2 (ENSMMUG00000044784) #27	MEIS1 (ENSMMUG00000011216) #28	ENSMMUG00000049443	ETAA1 (ENSMMUG00000062156) #29	C1D (ENSMMUG00000017209) #30	DNAAF10 (ENSMMUG00000017460) #31	PNO1 (ENSMMUG00000017461) #32	PPP3R1 (ENSMMUG00000046264) #33	CNRIP1 (ENSMMUG00000046992) #34	PLEK (ENSMMUG00000009195) #35	FBXO48 (ENSMMUG00000060845) #36	APLF (ENSMMUG00000007552) #37
Pig-tailed macaque	MODERN SPECIES	341	B3GNT2 (ENSMNEG00000025770) #9	TMEM17 (ENSMNEG00000040952) #10	ENSMNEG00000038346	EHBP1 (ENSMNEG00000043070) #11	OTX1 (ENSMNEG00000044308) #12	WDPCP (ENSMNEG00000030809) #13	MDH1 (ENSMNEG00000039034) #15	UGP2 (ENSMNEG00000038452) #16	VPS54 (ENSMNEG00000031281) #17	PELI1 (ENSMNEG00000030553) #18	LGALSL (ENSMNEG00000029755) #19	AFTPH (ENSMNEG00000040816) #20	ENSMNEG00000025227 #21	SERTAD2 (ENSMNEG00000008861)	ENSMNEG00000006388	SLC1A4 (ENSMNEG00000004689) #22	CEP68 (ENSMNEG00000032212) #23	ENSMNEG00000042121 #24	ACTR2 (ENSMNEG00000044163) #26	SPRED2 (ENSMNEG00000028343) #27	ENSMNEG00000004414	ENSMNEG00000023818	MEIS1 (ENSMNEG00000037352) #28	ETAA1 (ENSMNEG00000043227) #29	ENSMNEG00000038737	C1D (ENSMNEG00000040612) #30	DNAAF10 (ENSMNEG00000027774) #31	ENSMNEG00000031066 #32	PPP3R1 (ENSMNEG00000043603) #33	CNRIP1 (ENSMNEG00000028096) #34	PLEK (ENSMNEG00000029803) #35
Cercopithecinae_b	ANCESTRAL SPECIES	15	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a.h #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958.lb.a #24	ENSGT00940000154556.tb.a #26	ENSGT00940000156841 #27	ENSGT00910000147398	ENSGT00940000155590.g.b	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000010283.ab.a	ENSGT00390000015405.s #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052.l.b #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35
Cercopithecinae_d	ANCESTRAL SPECIES	32	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.a	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a.h #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958.lb.a #24	ENSGT00940000154556.tb.a #26	ENSGT00940000156841 #27	ENSGT00910000147398	ENSGT00940000155590.g.b	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000010283.ab.a	ENSGT00390000015405.s #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052.l.b #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35
Drill	MODERN SPECIES	924											LGALSL (ENSMLEG00000042260) #19	AFTPH (ENSMLEG00000030266) #20	ENSMLEG00000028092 #21	SERTAD2 (ENSMLEG00000023036)	ENSMLEG00000029653	SLC1A4 (ENSMLEG00000036589) #22	CEP68 (ENSMLEG00000035123) #23	RAB1A (ENSMLEG00000042535) #24	ACTR2 (ENSMLEG00000038155) #26	SPRED2 (ENSMLEG00000038726) #27	ENSMLEG00000042632	MEIS1 (ENSMLEG00000034716) #28	ETAA1 (ENSMLEG00000044155) #29	ENSMLEG00000040103
Platyrrhini	ANCESTRAL SPECIES	13	ENSGT00390000012029.h #8	ENSGT00940000155345.m #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a.h.a.b #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a.a.a #18	ENSGT00950000183050.b.b.a.a.b #18	ENSGT00940000155337 #19	ENSGT00390000001858 #21	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958.lb.a #24	ENSGT00940000154277.a.b.a.b	ENSGT00940000154556 #26	ENSGT00910000147214	ENSGT00940000156841 #27	ENSGT00390000003682.ib.a.a.b.a	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405.t #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052.l.c #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35
Cebidae	ANCESTRAL SPECIES	15	ENSGT00550000074956 #7	ENSGT00390000012029.h #8	ENSGT00940000155345.m #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a.h.a.b #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a.a.b #18	ENSGT00940000155337 #19	ENSGT00390000001858 #21	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958.lb.a #24	ENSGT00940000154277.a.b.a.b	ENSGT00940000154556 #26	ENSGT00910000147214	ENSGT00940000156841 #27	ENSGT00390000003682.ib.a.a.b.a	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405.t #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052.l.c #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35
Marmoset	MODERN SPECIES	5	EHBP1 (ENSCJAG00000008586) #11	OTX1 (ENSCJAG00000083222) #12	ENSCJAG00000075756	WDPCP (ENSCJAG00000007061) #13	ENSCJAG00000007018 #15	UGP2 (ENSCJAG00000006960) #16	VPS54 (ENSCJAG00000006914) #17	PELI1 (ENSCJAG00000006889) #18	ENSCJAG00000070703	ENSCJAG00000006878 #19	ENSCJAG00000046867 #21	AFTPH (ENSCJAG00000006819) #20	SERTAD2 (ENSCJAG00000006818)	ENSCJAG00000074553	ENSCJAG00000074052	SLC1A4 (ENSCJAG00000006795) #22	CEP68 (ENSCJAG00000006788) #23	ENSCJAG00000072263	ENSCJAG00000074307	ENSCJAG00000046275 #24	ACTR2 (ENSCJAG00000006722) #26	SPRED2 (ENSCJAG00000006693) #27	ENSCJAG00000080598	ENSCJAG00000079193	ENSCJAG00000067866	ENSCJAG00000073899	MEIS1 (ENSCJAG00000006613) #28	ETAA1 (ENSCJAG00000006604) #29	ENSCJAG00000083243	ENSCJAG00000006589 #30	DNAAF10 (ENSCJAG00000044589) #31
Cebidae_a	ANCESTRAL SPECIES	30	ENSGT00940000157824	ENSGT00550000074956 #7	ENSGT00390000012029.h #8	ENSGT00940000155345.m #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a.h.a.b.b #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a.a.b #18	ENSGT00940000155337 #19	ENSGT00390000001858 #21	ENSGT00940000154186.a #20	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958.lb.a #24	ENSGT00940000154277.a.b.a.b	ENSGT00940000154556 #26	ENSGT00910000147214	ENSGT00940000156841 #27	ENSGT00390000003682.ib.a.a.b.a	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405.t #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052.l.c #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35
Capuchin	MODERN SPECIES	23	ENSCCAG00000014874	COMMD1 (ENSCCAG00000021063) #8	B3GNT2 (ENSCCAG00000004376) #9	TMEM17 (ENSCCAG00000033287) #10	EHBP1 (ENSCCAG00000022934) #11	OTX1 (ENSCCAG00000037783) #12	WDPCP (ENSCCAG00000026603) #13	ENSCCAG00000032985 #15	UGP2 (ENSCCAG00000038081) #16	VPS54 (ENSCCAG00000037148) #17	ENSCCAG00000033895 #18	LGALSL (ENSCCAG00000035879) #19	ENSCCAG00000030319 #21	AFTPH (ENSCCAG00000022631) #20	ENSCCAG00000032655	SLC1A4 (ENSCCAG00000022825) #22	ENSCCAG00000037790	CEP68 (ENSCCAG00000022595) #23	RAB1A (ENSCCAG00000021869) #24	ENSCCAG00000038117	ENSCCAG00000021773	ACTR2 (ENSCCAG00000030047) #26	SPRED2 (ENSCCAG00000035702) #27	MEIS1 (ENSCCAG00000020640) #28	ENSCCAG00000023051	ETAA1 (ENSCCAG00000027189) #29	ENSCCAG00000030405 #30	DNAAF10 (ENSCCAG00000018459) #31	ENSCCAG00000030366 #32	ENSCCAG00000017887	PPP3R1 (ENSCCAG00000029751) #33
Bolivian squirrel monkey	MODERN SPECIES	48	FAM161A (ENSSBOG00000034089)	CCT4 (ENSSBOG00000026025) #7	COMMD1 (ENSSBOG00000032499) #8	ENSSBOG00000019927 #9	TMEM17 (ENSSBOG00000026954) #10	EHBP1 (ENSSBOG00000027993) #11	OTX1 (ENSSBOG00000030274) #12	WDPCP (ENSSBOG00000020988) #13	ENSSBOG00000035941 #15	UGP2 (ENSSBOG00000035973) #16	VPS54 (ENSSBOG00000034598) #17	PELI1 (ENSSBOG00000001340) #18	LGALSL (ENSSBOG00000029775) #19	ENSSBOG00000019039 #21	AFTPH (ENSSBOG00000027803) #20	SLC1A4 (ENSSBOG00000023405) #22	CEP68 (ENSSBOG00000033296) #23	RAB1A (ENSSBOG00000023732) #24	ENSSBOG00000031295	ENSSBOG00000018757	ENSSBOG00000024339	ACTR2 (ENSSBOG00000028028) #26	SPRED2 (ENSSBOG00000000156) #27	ENSSBOG00000018908	MEIS1 (ENSSBOG00000000062) #28	ETAA1 (ENSSBOG00000020086) #29	ENSSBOG00000025275 #30	DNAAF10 (ENSSBOG00000035020) #31	ENSSBOG00000026710 #32	PPP3R1 (ENSSBOG00000021442) #33	CNRIP1 (ENSSBOG00000020258) #34
Tarsier	MODERN SPECIES	5725																SLC1A4 (ENSTSYG00000001925) #22
Strepsirrhini	ANCESTRAL SPECIES	13	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a.g.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00390000001858 #21	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00910000147398	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37
Coquerels sifaka	MODERN SPECIES	157	XPO1 (ENSPCOG00000023123)	FAM161A (ENSPCOG00000025568)	CCT4 (ENSPCOG00000024760) #7	COMMD1 (ENSPCOG00000002593) #8	TMEM17 (ENSPCOG00000003689) #10	EHBP1 (ENSPCOG00000013807) #11	OTX1 (ENSPCOG00000007128) #12	WDPCP (ENSPCOG00000021207) #13	ENSPCOG00000022476 #15	UGP2 (ENSPCOG00000021592) #16	VPS54 (ENSPCOG00000021532) #17	PELI1 (ENSPCOG00000016939) #18	LGALSL (ENSPCOG00000024215) #19	AFTPH (ENSPCOG00000015597) #20	ENSPCOG00000014082 #21	SLC1A4 (ENSPCOG00000008394) #22	CEP68 (ENSPCOG00000017947) #23	RAB1A (ENSPCOG00000017244) #24	ACTR2 (ENSPCOG00000025808) #26	SPRED2 (ENSPCOG00000021475) #27	ENSPCOG00000003824	ENSPCOG00000017120	MEIS1 (ENSPCOG00000026417) #28
Greater bamboo lemur	MODERN SPECIES	617													LGALSL (ENSPSMG00000023973) #19	AFTPH (ENSPSMG00000024022) #20	SERTAD2 (ENSPSMG00000024045)	SLC1A4 (ENSPSMG00000000139) #22	CEP68 (ENSPSMG00000000219) #23	RAB1A (ENSPSMG00000000273) #24	ENSPSMG00000000286	ACTR2 (ENSPSMG00000000347) #26	SPRED2 (ENSPSMG00000000404) #27	MEIS1 (ENSPSMG00000000482) #28	ETAA1 (ENSPSMG00000000519) #29	C1D (ENSPSMG00000000528) #30	DNAAF10 (ENSPSMG00000000572) #31	PNO1 (ENSPSMG00000000616) #32	PPP3R1 (ENSPSMG00000000675) #33	CNRIP1 (ENSPSMG00000000727) #34	PLEK (ENSPSMG00000000754) #35	ENSPSMG00000000764 #36	APLF (ENSPSMG00000000808) #37
Rodentia	ANCESTRAL SPECIES	15	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00390000001858 #21	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00960000190724	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37
Rodentia_B	ANCESTRAL SPECIES	14	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00390000001858 #21	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544.a
Muroidea_A	ANCESTRAL SPECIES	13	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00390000001858 #21	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00940000155450	ENSGT00390000001319
Cricetidae	ANCESTRAL SPECIES	14	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00390000001858 #21	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00940000155450	ENSGT00390000001319
Prairie vole	MODERN SPECIES	92	Cct4 (ENSMOCG00000011789) #7	Commd1 (ENSMOCG00000006391) #8	B3gnt2 (ENSMOCG00000000086) #9	Tmem17 (ENSMOCG00000015494) #10	Ehbp1 (ENSMOCG00000007287) #11	Otx1 (ENSMOCG00000014191) #12	Wdpcp (ENSMOCG00000003579) #13	Mdh1 (ENSMOCG00000015448) #15	Ugp2 (ENSMOCG00000009715) #16	Vps54 (ENSMOCG00000009563) #17	Peli1 (ENSMOCG00000016437) #18	Gm5065 (ENSMOCG00000014300) #19	ENSMOCG00000003932 #21	Aftph (ENSMOCG00000015081) #20	Sertad2 (ENSMOCG00000002173)	Slc1a4 (ENSMOCG00000001173) #22	Cep68 (ENSMOCG00000003444) #23	Rab1a (ENSMOCG00000017022) #24	Actr2 (ENSMOCG00000008248) #26	Spred2 (ENSMOCG00000014005) #27	Meis1 (ENSMOCG00000016359) #28	Etaa1 (ENSMOCG00000018537) #29	C1d (ENSMOCG00000010860) #30	Dnaaf10 (ENSMOCG00000000313) #31	Pno1 (ENSMOCG00000017268) #32	Ppp3r1 (ENSMOCG00000012867) #33	Cnrip1 (ENSMOCG00000004432) #34	Plek (ENSMOCG00000018168) #35	Fbxo48 (ENSMOCG00000015915) #36	Egfr (ENSMOCG00000000900)	ENSMOCG00000004092
Chinese hamster chok1gshd	MODERN SPECIES	121	ENSCGRG00001025059	Tmem17 (ENSCGRG00001024384) #10	Ehbp1 (ENSCGRG00001022633) #11	Otx1 (ENSCGRG00001017328) #12	Wdpcp (ENSCGRG00001012886) #13	ENSCGRG00001023990	Mdh1 (ENSCGRG00001021102) #15	UGP2 (ENSCGRG00001012845) #16	Vps54 (ENSCGRG00001009286) #17	Peli1 (ENSCGRG00001021958) #18	Gm5065 (ENSCGRG00001013868) #19	ENSCGRG00001009126 #21	Aftph (ENSCGRG00001016162) #20	Sertad2 (ENSCGRG00001009657)	ENSCGRG00001005474	Slc1a4 (ENSCGRG00001017715) #22	Cep68 (ENSCGRG00001014327) #23	ENSCGRG00001012691 #24	ENSCGRG00001017243 #26	Spred2 (ENSCGRG00001015924) #27	Meis1 (ENSCGRG00001009447) #28	Etaa1 (ENSCGRG00001020354) #29	C1d (ENSCGRG00001023376) #30	ENSCGRG00001017610 #31	ENSCGRG00001007472 #32	Ppp3r1 (ENSCGRG00001020769) #33	Cnrip1 (ENSCGRG00001014944) #34	Plek (ENSCGRG00001023663) #35	Fbxo48 (ENSCGRG00001017787) #36	Egfr (ENSCGRG00001020721)	ENSCGRG00001010828
Golden Hamster	MODERN SPECIES	639	Cct4 (ENSMAUG00000000518) #7	Commd1 (ENSMAUG00000010569) #8	B3gnt2 (ENSMAUG00000002963) #9	Tmem17 (ENSMAUG00000003448) #10	Ehbp1 (ENSMAUG00000000935) #11	Otx1 (ENSMAUG00000019114) #12	Wdpcp (ENSMAUG00000011349) #13	ENSMAUG00000012018	Mdh1 (ENSMAUG00000018086) #15	ENSMAUG00000012689 #16	Vps54 (ENSMAUG00000010788) #17	Peli1 (ENSMAUG00000012937) #18	ENSMAUG00000015033 #19	Aftph (ENSMAUG00000016557) #20	Sertad2 (ENSMAUG00000004242)	Slc1a4 (ENSMAUG00000019775) #22	Cep68 (ENSMAUG00000014820) #23	Rab1a (ENSMAUG00000012156) #24	Actr2 (ENSMAUG00000008458) #26	Spred2 (ENSMAUG00000013657) #27	Meis1 (ENSMAUG00000001130) #28	Etaa1 (ENSMAUG00000010594) #29	C1d (ENSMAUG00000008974) #30	Dnaaf10 (ENSMAUG00000011603) #31	Pno1 (ENSMAUG00000014995) #32	Ppp3r1 (ENSMAUG00000014614) #33	Cnrip1 (ENSMAUG00000019592) #34	Plek (ENSMAUG00000011299) #35	Fbxo48 (ENSMAUG00000020533) #36	Egfr (ENSMAUG00000000581)	Sim1 (ENSMAUG00000021356)
Murinae	ANCESTRAL SPECIES	12	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00950000183152.A	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052.s #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00940000155450	ENSGT00390000001319
Mus	ANCESTRAL SPECIES	14	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00950000183152.A	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052.s #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00940000155450	ENSGT00390000001319
Mus_A	ANCESTRAL SPECIES	2	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00950000183152.A	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052.s #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00940000155450	ENSGT00390000001319.cb
Mus_B	ANCESTRAL SPECIES	2	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00950000183152.A	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052.s #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00940000155450	ENSGT00390000001319.cb
Mouse	MODERN SPECIES	2	Cct4 (ENSMUSG00000007739) #7	Commd1 (ENSMUSG00000051355) #8	Commd1b (ENSMUSG00000098650)	B3gnt2 (ENSMUSG00000051650) #9	Tmem17 (ENSMUSG00000049904) #10	Ehbp1 (ENSMUSG00000042302) #11	Otx1 (ENSMUSG00000005917) #12	Wdpcp (ENSMUSG00000020319) #13	Mdh1 (ENSMUSG00000020321) #15	Ugp2 (ENSMUSG00000001891) #16	Vps54 (ENSMUSG00000020128) #17	Peli1 (ENSMUSG00000020134) #18	Lgalsl (ENSMUSG00000042363) #19	Aftph (ENSMUSG00000049659) #20	Sertad2 (ENSMUSG00000049800)	Slc1a4 (ENSMUSG00000020142) #22	Cep68 (ENSMUSG00000044066) #23	Rab1a (ENSMUSG00000020149) #24	Actr2 (ENSMUSG00000020152) #26	Spred2 (ENSMUSG00000045671) #27	Meis1 (ENSMUSG00000020160) #28	Etaa1 (ENSMUSG00000016984) #29	C1d (ENSMUSG00000000581) #30	Pno1 (ENSMUSG00000020116) #32	Dnaaf10 (ENSMUSG00000078970) #31	Ppp3r1 (ENSMUSG00000033953) #33	Cnrip1 (ENSMUSG00000044629) #34	Plek (ENSMUSG00000020120) #35	Fbxo48 (ENSMUSG00000044966) #36	Egfr (ENSMUSG00000020122)	Sec61g (ENSMUSG00000078974)
Mus_C	ANCESTRAL SPECIES	3	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00950000183152.A	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052.s #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00940000155450	ENSGT00390000001319.cb
spretus	MODERN SPECIES	2	Commd1 (MGP_SPRETEiJ_G0016975) #8	MGP_SPRETEiJ_G0016974 #8	B3gnt2 (MGP_SPRETEiJ_G0016973) #9	MGP_SPRETEiJ_G0016972	Tmem17 (MGP_SPRETEiJ_G0016971) #10	Ehbp1 (MGP_SPRETEiJ_G0016970) #11	Otx1 (MGP_SPRETEiJ_G0016969) #12	Wdpcp (MGP_SPRETEiJ_G0016968) #13	Mdh1 (MGP_SPRETEiJ_G0016967) #15	Ugp2 (MGP_SPRETEiJ_G0016966) #16	Vps54 (MGP_SPRETEiJ_G0016965) #17	Peli1 (MGP_SPRETEiJ_G0016964) #18	Lgalsl (MGP_SPRETEiJ_G0016963) #19	Aftph (MGP_SPRETEiJ_G0016962) #20	Sertad2 (MGP_SPRETEiJ_G0016961)	Slc1a4 (MGP_SPRETEiJ_G0016960) #22	Cep68 (MGP_SPRETEiJ_G0016959) #23	Rab1a (MGP_SPRETEiJ_G0016958) #24	Actr2 (MGP_SPRETEiJ_G0016957) #26	Spred2 (MGP_SPRETEiJ_G0016956) #27	Asb12 (MGP_SPRETEiJ_G0016955)	Meis1 (MGP_SPRETEiJ_G0016954) #28	Etaa1 (MGP_SPRETEiJ_G0016953) #29	C1d (MGP_SPRETEiJ_G0016952) #30	Pno1 (MGP_SPRETEiJ_G0016951) #32	Dnaaf10 (MGP_SPRETEiJ_G0016950) #31	Ppp3r1 (MGP_SPRETEiJ_G0016949) #33	MGP_SPRETEiJ_G0016948 #34	Plek (MGP_SPRETEiJ_G0016947) #35	Fbxo48 (MGP_SPRETEiJ_G0016946) #36	Egfr (MGP_SPRETEiJ_G0016945)
Shrew mouse	MODERN SPECIES	4	MGP_PahariEiJ_G0016759	B3gnt2 (MGP_PahariEiJ_G0016760) #9	MGP_PahariEiJ_G0016761	Tmem17 (MGP_PahariEiJ_G0016762) #10	Ehbp1 (MGP_PahariEiJ_G0016763) #11	Otx1 (MGP_PahariEiJ_G0016764) #12	MGP_PahariEiJ_G0016765 #13	Mdh1 (MGP_PahariEiJ_G0016766) #15	Ugp2 (MGP_PahariEiJ_G0016767) #16	Vps54 (MGP_PahariEiJ_G0016768) #17	Peli1 (MGP_PahariEiJ_G0016769) #18	MGP_PahariEiJ_G0016770 #19	Lgalsl (MGP_PahariEiJ_G0016771) #19	Aftph (MGP_PahariEiJ_G0016772) #20	Sertad2 (MGP_PahariEiJ_G0016773)	Slc1a4 (MGP_PahariEiJ_G0016774) #22	Cep68 (MGP_PahariEiJ_G0016775) #23	Rab1a (MGP_PahariEiJ_G0016776) #24	Actr2 (MGP_PahariEiJ_G0016777) #26	Spred2 (MGP_PahariEiJ_G0016778) #27	Meis1 (MGP_PahariEiJ_G0016779) #28	Etaa1 (MGP_PahariEiJ_G0016780) #29	C1d (MGP_PahariEiJ_G0016781) #30	Dnaaf10 (MGP_PahariEiJ_G0016782) #31	Pno1 (MGP_PahariEiJ_G0016783) #32	Ppp3r1 (MGP_PahariEiJ_G0016784) #33	MGP_PahariEiJ_G0016785 #34	Plek (MGP_PahariEiJ_G0016786) #35	Fbxo48 (MGP_PahariEiJ_G0016787) #36	Egfr (MGP_PahariEiJ_G0016788)	Sec61g (MGP_PahariEiJ_G0016789)
Rat	MODERN SPECIES	5	AABR07016623.1 (ENSRNOG00000009240)	Tmem17 (ENSRNOG00000009220) #10	Ehbp1 (ENSRNOG00000008917) #11	Otx1 (ENSRNOG00000065081) #12	ENSRNOG00000065408	Wdpcp (ENSRNOG00000054331) #13	Mdh1 (ENSRNOG00000008103) #15	Ugp2 (ENSRNOG00000008079) #16	Vps54 (ENSRNOG00000007125) #17	Peli1 (ENSRNOG00000006329) #18	LOC108352809 (ENSRNOG00000042277)	Lgalsl (ENSRNOG00000005464) #19	LOC108352861 (ENSRNOG00000029052)	Aftph (ENSRNOG00000005411) #20	Sertad2 (ENSRNOG00000005393)	Slc1a4 (ENSRNOG00000005248) #22	Cep68 (ENSRNOG00000027282) #23	Rab1a (ENSRNOG00000004992) #24	Rpl38 (ENSRNOG00000033686)	ENSRNOG00000070133	AABR07016566.1 (ENSRNOG00000051648)	Actr2 (ENSRNOG00000004959) #26	Spred2 (ENSRNOG00000004888) #27	Meis1 (ENSRNOG00000004606) #28	Etaa1l1 (ENSRNOG00000006185) #29	Hnrnpk-ps1 (ENSRNOG00000063529)	C1d (ENSRNOG00000005982) #30	Pno1 (ENSRNOG00000005524) #32	Cnrip1 (ENSRNOG00000005326) #34	Plek (ENSRNOG00000005214) #35	Fbxo48 (ENSRNOG00000023026) #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	1542				Ehbp1 (ENSNGAG00000022543) #11	Otx1 (ENSNGAG00000023167) #12	Wdpcp (ENSNGAG00000022039) #13	ENSNGAG00000016412	Mdh1 (ENSNGAG00000022959) #15	Ugp2 (ENSNGAG00000014716) #16	Vps54 (ENSNGAG00000019724) #17	Peli1 (ENSNGAG00000014256) #18	ENSNGAG00000017298 #19	Aftph (ENSNGAG00000022259) #20	ENSNGAG00000010686 #21	Sertad2 (ENSNGAG00000019290)	Slc1a4 (ENSNGAG00000022015) #22	Cep68 (ENSNGAG00000024137) #23	Rab1a (ENSNGAG00000005838) #24
Lesser Egyptian jerboa	MODERN SPECIES	74	ENSJJAG00000003107 #7	Commd1 (ENSJJAG00000006007) #8	B3gnt2 (ENSJJAG00000007561) #9	Tmem17 (ENSJJAG00000007029) #10	Ehbp1 (ENSJJAG00000023917) #11	Otx1 (ENSJJAG00000011287) #12	ENSJJAG00000015148 #13	ENSJJAG00000014833 #13	Mdh1 (ENSJJAG00000024369) #15	Ugp2 (ENSJJAG00000014432) #16	Vps54 (ENSJJAG00000012401) #17	Peli1 (ENSJJAG00000000296) #18	Gm5065 (ENSJJAG00000016772) #19	ENSJJAG00000020384 #20	Sertad2 (ENSJJAG00000015989)	Slc1a4 (ENSJJAG00000002418) #22	Cep68 (ENSJJAG00000016421) #23	Rab1a (ENSJJAG00000014396) #24	Actr2 (ENSJJAG00000008642) #26	Spred2 (ENSJJAG00000020977) #27	Meis1 (ENSJJAG00000015459) #28	ENSJJAG00000011226 #29	ENSJJAG00000021064	ENSJJAG00000023186 #30	Dnaaf10 (ENSJJAG00000019935) #31	Pno1 (ENSJJAG00000022862) #32	Ppp3r1 (ENSJJAG00000016869) #33	Cnrip1 (ENSJJAG00000016204) #34	Plek (ENSJJAG00000005757) #35	ENSJJAG00000011210 #36	Ywhaq (ENSJJAG00000008194)
Kangaroo rat	MODERN SPECIES	382	Tmem17 (ENSDORG00000024954) #10	Ehbp1 (ENSDORG00000002628) #11	ENSDORG00000023858	Otx1 (ENSDORG00000024553) #12	Wdpcp (ENSDORG00000003329) #13	ENSDORG00000009021	Mdh1 (ENSDORG00000000099) #15	Rasl2-9 (ENSDORG00000027038)	Ugp2 (ENSDORG00000013164) #16	Vps54 (ENSDORG00000009782) #17	Peli1 (ENSDORG00000025404) #18	ENSDORG00000027919 #19	ENSDORG00000004159 #20	ENSDORG00000027058 #21	Sertad2 (ENSDORG00000025954)	Slc1a4 (ENSDORG00000002394) #22	Cep68 (ENSDORG00000002111) #23	ENSDORG00000028628 #24	Actr2 (ENSDORG00000001487) #26	Spred2 (ENSDORG00000012174) #27	Meis1 (ENSDORG00000008334) #28	C1d (ENSDORG00000003300) #30	Dnaaf10 (ENSDORG00000006862) #31	ENSDORG00000006867 #32	Ppp3r1 (ENSDORG00000024931) #33	Cnrip1 (ENSDORG00000025749) #34	Plek (ENSDORG00000029923) #35	Fbxo48 (ENSDORG00000011239) #36	Aplf (ENSDORG00000011241) #37	ENSDORG00000012853	Arhgap25 (ENSDORG00000012856)
Rodentia_A	ANCESTRAL SPECIES	14	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00960000190724	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37
Sciuridae	ANCESTRAL SPECIES	16	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00960000190724	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37
Marmotini	ANCESTRAL SPECIES	14	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00960000190724	ENSGT00940000156841 #27	ENSGT00940000154431.e.a.f	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36
Marmotini_b	ANCESTRAL SPECIES	44	ENSGT00550000074956 #7	ENSGT00390000012029.m #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00960000190724	ENSGT00940000156841 #27	ENSGT00940000154431.e.a.f	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36
Arctic ground squirrel	MODERN SPECIES	47	CCT4 (ENSUPAG00010011275) #7	ENSUPAG00010011263 #8	B3GNT2 (ENSUPAG00010011255) #9	TMEM17 (ENSUPAG00010011243) #10	EHBP1 (ENSUPAG00010011097) #11	OTX1 (ENSUPAG00010011094) #12	WDPCP (ENSUPAG00010011061) #13	MDH1 (ENSUPAG00010011052) #15	UGP2 (ENSUPAG00010011000) #16	VPS54 (ENSUPAG00010010962) #17	PELI1 (ENSUPAG00010010945) #18	LGALSL (ENSUPAG00010010929) #19	AFTPH (ENSUPAG00010010843) #20	SERTAD2 (ENSUPAG00010010839)	ENSUPAG00010010837	SLC1A4 (ENSUPAG00010010829) #22	CEP68 (ENSUPAG00010010822) #23	RAB1A (ENSUPAG00010010773) #24	ACTR2 (ENSUPAG00010010750) #26	ENSUPAG00010010742	SPRED2 (ENSUPAG00010010724) #27	ENSUPAG00010010722	ENSUPAG00010010713	MEIS1 (ENSUPAG00010010695) #28	ENSUPAG00010010694	ETAA1 (ENSUPAG00010010688) #29	ENSUPAG00010010674 #30	DNAAF10 (ENSUPAG00010010668) #31	PNO1 (ENSUPAG00010010658) #32	PPP3R1 (ENSUPAG00010010653) #33	CNRIP1 (ENSUPAG00010010645) #34
Squirrel	MODERN SPECIES	91	COMMD1 (ENSSTOG00000015062) #8	B3GNT2 (ENSSTOG00000015068) #9	TMEM17 (ENSSTOG00000009462) #10	EHBP1 (ENSSTOG00000020225) #11	OTX1 (ENSSTOG00000025219) #12	WDPCP (ENSSTOG00000014213) #13	MDH1 (ENSSTOG00000014227) #15	ENSSTOG00000023912	UGP2 (ENSSTOG00000000789) #16	VPS54 (ENSSTOG00000023517) #17	PELI1 (ENSSTOG00000026315) #18	LGALSL (ENSSTOG00000024204) #19	AFTPH (ENSSTOG00000020828) #20	ENSSTOG00000030042 #21	SERTAD2 (ENSSTOG00000008454)	SLC1A4 (ENSSTOG00000025160) #22	CEP68 (ENSSTOG00000011479) #23	ENSSTOG00000020693 #24	ACTR2 (ENSSTOG00000012608) #26	SPRED2 (ENSSTOG00000022318) #27	ENSSTOG00000024155	MEIS1 (ENSSTOG00000009914) #28	ETAA1 (ENSSTOG00000027144) #29	C1D (ENSSTOG00000012346) #30	DNAAF10 (ENSSTOG00000024192) #31	PNO1 (ENSSTOG00000026989) #32	PPP3R1 (ENSSTOG00000025985) #33	CNRIP1 (ENSSTOG00000004875) #34	PLEK (ENSSTOG00000014667) #35	FBXO48 (ENSSTOG00000014675) #36	APLF (ENSSTOG00000014677) #37
Alpin marmot	MODERN SPECIES	6	ENSMMMG00000006529 #8	B3GNT2 (ENSMMMG00000006495) #9	TMEM17 (ENSMMMG00000006473) #10	EHBP1 (ENSMMMG00000006363) #11	OTX1 (ENSMMMG00000006353) #12	WDPCP (ENSMMMG00000006330) #13	MDH1 (ENSMMMG00000006303) #15	ENSMMMG00000006286	UGP2 (ENSMMMG00000006263) #16	VPS54 (ENSMMMG00000006188) #17	PELI1 (ENSMMMG00000006175) #18	LGALSL (ENSMMMG00000006152) #19	AFTPH (ENSMMMG00000006097) #20	ENSMMMG00000006048	ENSMMMG00000006042	SLC1A4 (ENSMMMG00000006026) #22	CEP68 (ENSMMMG00000005980) #23	RAB1A (ENSMMMG00000005929) #24	ACTR2 (ENSMMMG00000005910) #26	ENSMMMG00000005906	SPRED2 (ENSMMMG00000005882) #27	ENSMMMG00000005873	ENSMMMG00000005870	MEIS1 (ENSMMMG00000005763) #28	ENSMMMG00000005757	ENSMMMG00000005754	ETAA1 (ENSMMMG00000005704) #29	C1D (ENSMMMG00000005685) #30	DNAAF10 (ENSMMMG00000005668) #31	PNO1 (ENSMMMG00000005661) #32	PPP3R1 (ENSMMMG00000005651) #33
Eurasian red squirrel	MODERN SPECIES	5	ENSSVLG00005017714	ENSSVLG00005017804	ENSSVLG00005017931	CTNNA2 (ENSSVLG00005018168)	LRRTM1 (ENSSVLG00005018942)	ENSSVLG00005018963	ENSSVLG00005019021	ENSSVLG00005019059	SUCLG1 (ENSSVLG00005019152)	DNAH6 (ENSSVLG00005019791)	ENSSVLG00005021102	TMSB10 (ENSSVLG00005021149)	ENSSVLG00005021194	ENSSVLG00005021243	ENSSVLG00005021277	SLC1A4 (ENSSVLG00005021330) #22	SERTAD2 (ENSSVLG00005021387)	ENSSVLG00005021416 #20	LGALSL (ENSSVLG00005021478) #19	PELI1 (ENSSVLG00005021561) #18	VPS54 (ENSSVLG00005021631) #17	UGP2 (ENSSVLG00005021917) #16	MDH1 (ENSSVLG00005022103) #15	WDPCP (ENSSVLG00005022261) #13	OTX1 (ENSSVLG00005022587) #12	EHBP1 (ENSSVLG00005022645) #11	TMEM17 (ENSSVLG00005022771) #10	B3GNT2 (ENSSVLG00005022804) #9	ENSSVLG00005022821	ENSSVLG00005022859 #8	CRIPT (ENSSVLG00005022896)
Hystricomorpha	ANCESTRAL SPECIES	8	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A.f #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544.a
Hystricomorpha_a	ANCESTRAL SPECIES	35	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00390000001858 #21	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A.f #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544.a
Guinea pig	MODERN SPECIES	48	FAM161A (ENSCPOG00000002085)	CCT4 (ENSCPOG00000002086) #7	COMMD1 (ENSCPOG00000002088) #8	B3GNT2 (ENSCPOG00000034379) #9	TMEM17 (ENSCPOG00000035038) #10	EHBP1 (ENSCPOG00000002001) #11	OTX1 (ENSCPOG00000004881) #12	ENSCPOG00000030520 #13	ENSCPOG00000036317 #13	MDH1 (ENSCPOG00000010755) #15	UGP2 (ENSCPOG00000008459) #16	VPS54 (ENSCPOG00000037738) #17	PELI1 (ENSCPOG00000037199) #18	LGALSL (ENSCPOG00000039657) #19	ENSCPOG00000033401 #20	SLC1A4 (ENSCPOG00000008754) #22	CEP68 (ENSCPOG00000001592) #23	RAB1A (ENSCPOG00000015437) #24	ACTR2 (ENSCPOG00000025808) #26	SPRED2 (ENSCPOG00000037272) #27
Hystricomorpha_b	ANCESTRAL SPECIES	33	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00390000001858 #21	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A.f #23	ENSGT00940000154958.y #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544.a
Long-tailed chinchilla	MODERN SPECIES	131	CCT4 (ENSCLAG00000014321) #7	COMMD1 (ENSCLAG00000013262) #8	B3GNT2 (ENSCLAG00000013147) #9	TMEM17 (ENSCLAG00000013487) #10	EHBP1 (ENSCLAG00000007561) #11	OTX1 (ENSCLAG00000010265) #12	ENSCLAG00000008400 #13	MDH1 (ENSCLAG00000007815) #15	UGP2 (ENSCLAG00000010416) #16	VPS54 (ENSCLAG00000007366) #17	PELI1 (ENSCLAG00000006481) #18	LGALSL (ENSCLAG00000015114) #19	ENSCLAG00000012344 #21	AFTPH (ENSCLAG00000012032) #20	SERTAD2 (ENSCLAG00000008318)	SLC1A4 (ENSCLAG00000008207) #22	CEP68 (ENSCLAG00000012193) #23	RAB1A (ENSCLAG00000014766) #24	ACTR2 (ENSCLAG00000010920) #26	SPRED2 (ENSCLAG00000011449) #27	MEIS1 (ENSCLAG00000010420) #28	ETAA1 (ENSCLAG00000013575) #29	C1D (ENSCLAG00000011883) #30	DNAAF10 (ENSCLAG00000014702) #31	PNO1 (ENSCLAG00000015058) #32	PPP3R1 (ENSCLAG00000012159) #33	CNRIP1 (ENSCLAG00000012035) #34	PLEK (ENSCLAG00000010835) #35	FBXO48 (ENSCLAG00000010201) #36	APLF (ENSCLAG00000009519) #37	PROKR1 (ENSCLAG00000008825)
Degu	MODERN SPECIES	119	EHBP1 (ENSODEG00000012259) #11	OTX1 (ENSODEG00000012071) #12	ENSODEG00000011160	ENSODEG00000011103	ENSODEG00000019821	WDPCP (ENSODEG00000011330) #13	MDH1 (ENSODEG00000011582) #15	ENSODEG00000012736	ENSODEG00000011552 #16	VPS54 (ENSODEG00000012541) #17	PELI1 (ENSODEG00000011189) #18	ENSODEG00000011901	LGALSL (ENSODEG00000011485) #19	ENSODEG00000011805 #20	SERTAD2 (ENSODEG00000011523)	SLC1A4 (ENSODEG00000011406) #22	ENSODEG00000011248 #24	ENSODEG00000010956 #26	SPRED2 (ENSODEG00000012243) #27	ENSODEG00000012312	MEIS1 (ENSODEG00000012314) #28	ENSODEG00000011242 #30	ENSODEG00000019812	ENSODEG00000011043 #31	PNO1 (ENSODEG00000011769) #32	PPP3R1 (ENSODEG00000012397) #33	CNRIP1 (ENSODEG00000011175) #34	PLEK (ENSODEG00000011044) #35	FBXO48 (ENSODEG00000011400) #36	PROKR1 (ENSODEG00000011030)	ARHGAP25 (ENSODEG00000012290)
Naked mole-rat female	MODERN SPECIES	23	EHBP1 (ENSHGLG00000007334) #11	OTX1 (ENSHGLG00000007005) #12	ENSHGLG00000039651	WDPCP (ENSHGLG00000005902) #13	ENSHGLG00000034790	MDH1 (ENSHGLG00000033109) #15	UGP2 (ENSHGLG00000005211) #16	VPS54 (ENSHGLG00000004813) #17	ENSHGLG00000033380	PELI1 (ENSHGLG00000033688) #18	ENSHGLG00000035846 #19	ENSHGLG00000004286 #20	ENSHGLG00000004348 #21	ENSHGLG00000047996	ENSHGLG00000049432	SLC1A4 (ENSHGLG00000036619) #22	ENSHGLG00000048375 #23	CEP68 (ENSHGLG00000018361) #23	RAB1A (ENSHGLG00000045077) #24	ENSHGLG00000037092	ENSHGLG00000042711 #27	ENSHGLG00000034618	ENSHGLG00000041829	ENSHGLG00000013407	MEIS1 (ENSHGLG00000012586) #28	ENSHGLG00000020742	ETAA1 (ENSHGLG00000040625) #29	ENSHGLG00000012332 #30	DNAAF10 (ENSHGLG00000012153) #31	PNO1 (ENSHGLG00000045522) #32	PPP3R1 (ENSHGLG00000044041) #33
Lagomorpha	ANCESTRAL SPECIES	10	ENSGT00940000157824.c	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556.lb.a #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544.a
Pika	MODERN SPECIES	3798																SLC1A4 (ENSOPRG00000006584) #22	CEP68 (ENSOPRG00000006588) #23	RAB1A (ENSOPRG00000006595) #24
Rabbit	MODERN SPECIES	11	COMMD1 (ENSOCUG00000001093) #8	B3GNT2 (ENSOCUG00000017281) #9	TMEM17 (ENSOCUG00000010487) #10	ENSOCUG00000037865	EHBP1 (ENSOCUG00000013563) #11	OTX1 (ENSOCUG00000021773) #12	WDPCP (ENSOCUG00000006156) #13	MDH1 (ENSOCUG00000006166) #15	ENSOCUG00000002137 #16	VPS54 (ENSOCUG00000002143) #17	PELI1 (ENSOCUG00000027961) #18	ENSOCUG00000031191	LGALSL (ENSOCUG00000013957) #19	AFTPH (ENSOCUG00000006390) #20	SERTAD2 (ENSOCUG00000008192)	ENSOCUG00000010821 #22	CEP68 (ENSOCUG00000016996) #23	RAB1A (ENSOCUG00000017003) #24	ACTR2 (ENSOCUG00000004906) #26	SPRED2 (ENSOCUG00000004913) #27	ENSOCUG00000034052	MEIS1 (ENSOCUG00000001842) #28	ETAA1 (ENSOCUG00000001812) #29	ENSOCUG00000009771 #30	DNAAF10 (ENSOCUG00000006087) #31	ENSOCUG00000006100 #32	PPP3R1 (ENSOCUG00000027562) #33	CNRIP1 (ENSOCUG00000006109) #34	PLEK (ENSOCUG00000006113) #35	FBXO48 (ENSOCUG00000006116) #36	APLF (ENSOCUG00000006121) #37
Tree shrew	MODERN SPECIES	7167																SLC1A4 (ENSTBEG00000004901) #22
Atlantogenata	ANCESTRAL SPECIES	43						ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544.a
Xenarthra	ANCESTRAL SPECIES	586									ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22
Sloth	MODERN SPECIES	1491																SLC1A4 (ENSCHOG00000004272) #22
Armadillo	MODERN SPECIES	2205				WDPCP (ENSDNOG00000038652) #13	ENSDNOG00000047467	MDH1 (ENSDNOG00000013329) #15	UGP2 (ENSDNOG00000014882) #16	VPS54 (ENSDNOG00000010697) #17	PELI1 (ENSDNOG00000047280) #18	LGALSL (ENSDNOG00000036857) #19	ENSDNOG00000043010	ENSDNOG00000044856 #20	ENSDNOG00000047214	ENSDNOG00000040550	SERTAD2 (ENSDNOG00000005514)	SLC1A4 (ENSDNOG00000005164) #22
Afrotheria	ANCESTRAL SPECIES	46						ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544.a
Afrotheria_a	ANCESTRAL SPECIES	45						ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544.a
Marsupialia	ANCESTRAL SPECIES	19	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00390000001858 #21	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544
Marsupialia_b	ANCESTRAL SPECIES	9	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00390000001858 #21	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544
Diprotodontia	ANCESTRAL SPECIES	2	ENSGT00550000074956.n #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00390000001858 #21	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544
Diprotodontia_a	ANCESTRAL SPECIES	2	ENSGT00550000074956.n #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00390000001858 #21	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544
koala	MODERN SPECIES	20	ENSPCIG00000018941	B3GNT2 (ENSPCIG00000024925) #9	TMEM17 (ENSPCIG00000024919) #10	EHBP1 (ENSPCIG00000005257) #11	OTX1 (ENSPCIG00000024582) #12	ENSPCIG00000037374	WDPCP (ENSPCIG00000024581) #13	MDH1 (ENSPCIG00000024579) #15	UGP2 (ENSPCIG00000022314) #16	VPS54 (ENSPCIG00000022325) #17	PELI1 (ENSPCIG00000022340) #18	LGALSL (ENSPCIG00000020092) #19	ENSPCIG00000025803 #21	AFTPH (ENSPCIG00000025802) #20	SERTAD2 (ENSPCIG00000025805)	SLC1A4 (ENSPCIG00000023205) #22	ENSPCIG00000023208 #23	RAB1A (ENSPCIG00000023212) #24	ACTR2 (ENSPCIG00000023217) #26	SPRED2 (ENSPCIG00000035990) #27	MEIS1 (ENSPCIG00000006632) #28	ENSPCIG00000016961 #29	ENSPCIG00000018629 #30	DNAAF10 (ENSPCIG00000018627) #31	PNO1 (ENSPCIG00000018626) #32	PPP3R1 (ENSPCIG00000018625) #33	CNRIP1 (ENSPCIG00000037069) #34	PLEK (ENSPCIG00000018623) #35	FBXO48 (ENSPCIG00000018620) #36	ENSPCIG00000018618 #37	ENSPCIG00000018616
Common wonbat	MODERN SPECIES	1017	COMMD1 (ENSVURG00010013596) #8	B3GNT2 (ENSVURG00010013583) #9	TMEM17 (ENSVURG00010013563) #10	EHBP1 (ENSVURG00010013361) #11	OTX1 (ENSVURG00010013336) #12	ENSVURG00010013329	WDPCP (ENSVURG00010013315) #13	MDH1 (ENSVURG00010013259) #15	UGP2 (ENSVURG00010013228) #16	VPS54 (ENSVURG00010013192) #17	PELI1 (ENSVURG00010013173) #18	LGALSL (ENSVURG00010013162) #19	ENSVURG00010013145 #21	AFTPH (ENSVURG00010013132) #20	SERTAD2 (ENSVURG00010013124)	SLC1A4 (ENSVURG00010013104) #22	ENSVURG00010013094 #23	RAB1A (ENSVURG00010013043) #24	ACTR2 (ENSVURG00010013014) #26	SPRED2 (ENSVURG00010012998) #27	MEIS1 (ENSVURG00010012689) #28	ENSVURG00010012665	ENSVURG00010012656 #29	C1D (ENSVURG00010012637) #30	DNAAF10 (ENSVURG00010012624) #31	PNO1 (ENSVURG00010012614) #32	PPP3R1 (ENSVURG00010012603) #33	CNRIP1 (ENSVURG00010012599) #34	PLEK (ENSVURG00010012588) #35	FBXO48 (ENSVURG00010012574) #36	ENSVURG00010012569 #37
Wallaby	MODERN SPECIES	2483																ENSMEUG00000006285 #22
Tasmanian devil	MODERN SPECIES	1	CCT4 (ENSSHAG00000008579) #7	B3GNT2 (ENSSHAG00000027237) #9	COMMD1 (ENSSHAG00000005803) #8	TMEM17 (ENSSHAG00000014235) #10	EHBP1 (ENSSHAG00000011490) #11	OTX1 (ENSSHAG00000011389) #12	WDPCP (ENSSHAG00000009447) #13	MDH1 (ENSSHAG00000008365) #15	UGP2 (ENSSHAG00000003089) #16	VPS54 (ENSSHAG00000000961) #17	PELI1 (ENSSHAG00000024330) #18	LGALSL (ENSSHAG00000026611) #19	AFTPH (ENSSHAG00000010633) #20	ENSSHAG00000028826 #21	SERTAD2 (ENSSHAG00000022880)	SLC1A4 (ENSSHAG00000029893) #22	ENSSHAG00000004687 #23	RAB1A (ENSSHAG00000027574) #24	ACTR2 (ENSSHAG00000000220) #26	SPRED2 (ENSSHAG00000030799) #27	MEIS1 (ENSSHAG00000016546) #28	ENSSHAG00000013030 #29	ENSSHAG00000012254	C1D (ENSSHAG00000020536) #30	DNAAF10 (ENSSHAG00000007449) #31	PNO1 (ENSSHAG00000007326) #32	PPP3R1 (ENSSHAG00000006122) #33	CNRIP1 (ENSSHAG00000030089) #34	FBXO48 (ENSSHAG00000004078) #36	PLEK (ENSSHAG00000001830) #35	ENSSHAG00000002327 #37
Opossum	MODERN SPECIES		TMEM17 (ENSMODG00000002895) #10	ENSMODG00000046978	EHBP1 (ENSMODG00000002986) #11	OTX1 (ENSMODG00000037978) #12	ENSMODG00000038398	WDPCP (ENSMODG00000003049) #13	MDH1 (ENSMODG00000003073) #15	ENSMODG00000038904	ENSMODG00000003102 #16	VPS54 (ENSMODG00000003191) #17	PELI1 (ENSMODG00000003212) #18	ENSMODG00000003226 #19	ENSMODG00000047159 #21	AFTPH (ENSMODG00000003235) #20	SERTAD2 (ENSMODG00000023126)	SLC1A4 (ENSMODG00000003310) #22	ENSMODG00000003315 #23	RAB1A (ENSMODG00000003340) #24	ENSMODG00000047741	ACTR2 (ENSMODG00000003364) #26	SPRED2 (ENSMODG00000003380) #27	MEIS1 (ENSMODG00000003396) #28	ENSMODG00000003554 #29	C1D (ENSMODG00000003561) #30	DNAAF10 (ENSMODG00000003598) #31	PNO1 (ENSMODG00000003567) #32	ENSMODG00000003621	PPP3R1 (ENSMODG00000003614) #33	CNRIP1 (ENSMODG00000042412) #34	PLEK (ENSMODG00000003654) #35	FBXO48 (ENSMODG00000023128) #36
Platypus	MODERN SPECIES	20	CCT4 (ENSOANG00000012419) #7	COMMD1 (ENSOANG00000012420) #8	B3GNT2 (ENSOANG00000012421) #9	TMEM17 (ENSOANG00000012422) #10	EHBP1 (ENSOANG00000012423) #11	OTX1 (ENSOANG00000044489) #12	WDPCP (ENSOANG00000012425) #13	MDH1 (ENSOANG00000012426) #15	UGP2 (ENSOANG00000012427) #16	VPS54 (ENSOANG00000012428) #17	PELI1 (ENSOANG00000012431) #18	LGALSL (ENSOANG00000012432) #19	ENSOANG00000036481 #21	AFTPH (ENSOANG00000012433) #20	SERTAD2 (ENSOANG00000012435)	SLC1A4 (ENSOANG00000012436) #22	ENSOANG00000045432 #23	RAB1A (ENSOANG00000012438) #24	ACTR2 (ENSOANG00000039143) #26	SPRED2 (ENSOANG00000046721) #27	MEIS1 (ENSOANG00000012441) #28	ENSOANG00000012442 #29	DNAAF10 (ENSOANG00000008385) #31	PNO1 (ENSOANG00000045797) #32	ENSOANG00000008386 #33	CNRIP1 (ENSOANG00000037625) #34	PLEK (ENSOANG00000050161) #35	FBXO48 (ENSOANG00000008392) #36	ENSOANG00000008393 #37	ENSOANG00000008395	GPCPD1 (ENSOANG00000008396)
Sauria	ANCESTRAL SPECIES	1	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544
Lepidosauria	ANCESTRAL SPECIES	69	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A.h #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544
Episquamata	ANCESTRAL SPECIES		ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00390000001858 #21	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A.h #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544	ENSGT00390000016976
Toxicofera	ANCESTRAL SPECIES		ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT01100000263484.C.a.l	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A.h #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544	ENSGT00390000016976
Elapidae	ANCESTRAL SPECIES		ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT01100000263484.C.a.l	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A.h #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544	ENSGT00390000016976
Indian cobra	MODERN SPECIES		B3GNT2 (ENSNNAG00000014031) #9	TMEM17 (ENSNNAG00000014018) #10	EHBP1 (ENSNNAG00000013729) #11	OTX1 (ENSNNAG00000013651) #12	WDPCP (ENSNNAG00000013610) #13	MDH1 (ENSNNAG00000013583) #15	UGP2 (ENSNNAG00000013510) #16	VPS54 (ENSNNAG00000013453) #17	PELI1 (ENSNNAG00000013434) #18	ENSNNAG00000013415	LGALSL (ENSNNAG00000013404) #19	MLNR (ENSNNAG00000013400)	ENSNNAG00000013378 #21	ENSNNAG00000013342 #20	SERTAD2 (ENSNNAG00000013335)	SLC1A4 (ENSNNAG00000013270) #22	ENSNNAG00000013240 #23	RAB1A (ENSNNAG00000013227) #24	ACTR2 (ENSNNAG00000013219) #26	SPRED2 (ENSNNAG00000013140) #27	MEIS1 (ENSNNAG00000013019) #28	C1D (ENSNNAG00000012988) #30	DNAAF10 (ENSNNAG00000012936) #31	PNO1 (ENSNNAG00000012918) #32	PPP3R1 (ENSNNAG00000012886) #33	ENSNNAG00000012878	CNRIP1 (ENSNNAG00000012863) #34	PLEK (ENSNNAG00000012798) #35	FBXO48 (ENSNNAG00000012774) #36	ENSNNAG00000012745 #37	ENSNNAG00000012694
Elapidae_a	ANCESTRAL SPECIES	6	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT01100000263484.C.a.l	ENSGT00390000001858 #21	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A.h #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544	ENSGT00390000016976
Blue-lipped sea krait	MODERN SPECIES	4591																SLC1A4 (ENSLLTG00000015997) #22	ENSLLTG00000015994 #23	RAB1A (ENSLLTG00000015992) #24
Acanthophiinae	ANCESTRAL SPECIES	8	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT01100000263484.C.a.l	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A.h #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544	ENSGT00390000016976
Eastern brown snake	MODERN SPECIES	56	COMMD1 (ENSPTXG00000006517) #8	B3GNT2 (ENSPTXG00000006518) #9	TMEM17 (ENSPTXG00000006519) #10	EHBP1 (ENSPTXG00000006520) #11	OTX1 (ENSPTXG00000006521) #12	ENSPTXG00000006522 #13	MDH1 (ENSPTXG00000006523) #15	UGP2 (ENSPTXG00000006524) #16	VPS54 (ENSPTXG00000006525) #17	PELI1 (ENSPTXG00000006526) #18	LGALSL (ENSPTXG00000006527) #19	MLNR (ENSPTXG00000006528)	AFTPH (ENSPTXG00000006529) #20	ENSPTXG00000005770 #21	SERTAD2 (ENSPTXG00000005772)	SLC1A4 (ENSPTXG00000005773) #22	ENSPTXG00000005775 #23	RAB1A (ENSPTXG00000005777) #24	ACTR2 (ENSPTXG00000005779) #26	SPRED2 (ENSPTXG00000005781) #27	MEIS1 (ENSPTXG00000005783) #28	C1D (ENSPTXG00000005785) #30	DNAAF10 (ENSPTXG00000005787) #31	PNO1 (ENSPTXG00000005788) #32	PPP3R1 (ENSPTXG00000005790) #33	CNRIP1 (ENSPTXG00000005792) #34	PLEK (ENSPTXG00000005794) #35	FBXO48 (ENSPTXG00000005797) #36	ENSPTXG00000005799 #37	ENSPTXG00000005800	BFSP1 (ENSPTXG00000005802)
Mainland tiger snake	MODERN SPECIES	23	B3GNT2 (ENSNSUG00000019091) #9	TMEM17 (ENSNSUG00000019093) #10	EHBP1 (ENSNSUG00000019094) #11	OTX1 (ENSNSUG00000019118) #12	WDPCP (ENSNSUG00000019119) #13	MDH1 (ENSNSUG00000019120) #15	UGP2 (ENSNSUG00000019121) #16	VPS54 (ENSNSUG00000019122) #17	PELI1 (ENSNSUG00000019123) #18	LGALSL (ENSNSUG00000019124) #19	MLNR (ENSNSUG00000019125)	AFTPH (ENSNSUG00000019132) #20	ENSNSUG00000019134 #21	SERTAD2 (ENSNSUG00000019135)	ENSNSUG00000019136	SLC1A4 (ENSNSUG00000019138) #22	ENSNSUG00000019162 #23	RAB1A (ENSNSUG00000019164) #24	ACTR2 (ENSNSUG00000019165) #26	SPRED2 (ENSNSUG00000019166) #27	MEIS1 (ENSNSUG00000019167) #28	C1D (ENSNSUG00000019174) #30	DNAAF10 (ENSNSUG00000019175) #31	PNO1 (ENSNSUG00000019176) #32	PPP3R1 (ENSNSUG00000019177) #33	CNRIP1 (ENSNSUG00000019179) #34	PLEK (ENSNSUG00000019180) #35	FBXO48 (ENSNSUG00000019181) #36	ENSNSUG00000019182	ENSNSUG00000019184	BFSP1 (ENSNSUG00000019185)
Lizard	MODERN SPECIES		FTCD (ENSACAG00000004847)	COL6A2 (ENSACAG00000004843)	ENSACAG00000004735	ENSACAG00000036057	ENSACAG00000043473	ENSACAG00000004607	RAB17 (ENSACAG00000004554)	PRLH (ENSACAG00000020999)	MLPH (ENSACAG00000004551)	ENSACAG00000040968	COL6A3 (ENSACAG00000004231)	LGALSL (ENSACAG00000001605) #19	ENSACAG00000001649	AFTPH (ENSACAG00000001654) #20	SERTAD2 (ENSACAG00000001714)	SLC1A4 (ENSACAG00000001717) #22	ENSACAG00000001863 #23	RAB1A (ENSACAG00000042522) #24	ENSACAG00000001866	ACTR2 (ENSACAG00000001918) #26	SPRED2 (ENSACAG00000002009) #27	MEIS1 (ENSACAG00000002083) #28	ENSACAG00000038561	C1D (ENSACAG00000001337) #30	DNAAF10 (ENSACAG00000001044) #31	PNO1 (ENSACAG00000001218) #32	ENSACAG00000040514 #33	CNRIP1 (ENSACAG00000000999) #34	PLEK (ENSACAG00000000871) #35	FBXO48 (ENSACAG00000000867) #36	APLF (ENSACAG00000000856) #37
Laterata	ANCESTRAL SPECIES	13	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00390000001858 #21	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A.h #23	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544	ENSGT00390000016976	ENSGT00940000156965	ENSGT00950000182767.b.a.b.b.a
Common wall lizard	MODERN SPECIES	11	ENSPMRG00000002482	ENSPMRG00000002506	ENSPMRG00000002513	ENSPMRG00000002532	ENSPMRG00000002539	ENSPMRG00000002563	GLYATL3 (ENSPMRG00000002579)	MMUT (ENSPMRG00000002599)	MLNR (ENSPMRG00000002658)	AFTPH (ENSPMRG00000002667) #20	ENSPMRG00000002692	SERTAD2 (ENSPMRG00000002700)	ENSPMRG00000002706	ENSPMRG00000002707	ENSPMRG00000002716	SLC1A4 (ENSPMRG00000002725) #22	CEP68 (ENSPMRG00000002741) #23	RAB1A (ENSPMRG00000002764) #24	ENSPMRG00000002778	ACTR2 (ENSPMRG00000002797) #26	SPRED2 (ENSPMRG00000002817) #27	ENSPMRG00000002838	MEIS1 (ENSPMRG00000002862) #28	ENSPMRG00000002903	ENSPMRG00000002914	C1D (ENSPMRG00000002925) #30	DNAAF10 (ENSPMRG00000002932) #31	ENSPMRG00000002943 #32	PPP3R1 (ENSPMRG00000002950) #33	CNRIP1 (ENSPMRG00000002954) #34	PLEK (ENSPMRG00000002960) #35
Argentine black and white tegu	MODERN SPECIES	54	COMMD1 (ENSSMRG00000005611) #8	B3GNT2 (ENSSMRG00000005605) #9	ENSSMRG00000005599	TMEM17 (ENSSMRG00000005554) #10	EHBP1 (ENSSMRG00000005524) #11	OTX1 (ENSSMRG00000005510) #12	WDPCP (ENSSMRG00000005490) #13	MDH1 (ENSSMRG00000005439) #15	UGP2 (ENSSMRG00000005430) #16	VPS54 (ENSSMRG00000005426) #17	PELI1 (ENSSMRG00000005414) #18	LGALSL (ENSSMRG00000005386) #19	ENSSMRG00000005383 #21	AFTPH (ENSSMRG00000005377) #20	SERTAD2 (ENSSMRG00000005372)	SLC1A4 (ENSSMRG00000005324) #22	ENSSMRG00000005322 #23	RAB1A (ENSSMRG00000005319) #24	ENSSMRG00000005312	ACTR2 (ENSSMRG00000005307) #26	ENSSMRG00000005304	ENSSMRG00000005300	SPRED2 (ENSSMRG00000005297) #27	ENSSMRG00000005289	ENSSMRG00000005283	MEIS1 (ENSSMRG00000005267) #28	C1D (ENSSMRG00000005249) #30	DNAAF10 (ENSSMRG00000005245) #31	PNO1 (ENSSMRG00000005236) #32	PPP3R1 (ENSSMRG00000005229) #33	CNRIP1 (ENSSMRG00000005226) #34
tuatara	MODERN SPECIES	78	FAM161A (ENSSPUG00000013112)	CCT4 (ENSSPUG00000013058) #7	COMMD1 (ENSSPUG00000013049) #8	B3GNT2 (ENSSPUG00000013043) #9	TMEM17 (ENSSPUG00000013034) #10	EHBP1 (ENSSPUG00000013010) #11	OTX1 (ENSSPUG00000012988) #12	WDPCP (ENSSPUG00000012958) #13	MDH1 (ENSSPUG00000012931) #15	UGP2 (ENSSPUG00000012916) #16	VPS54 (ENSSPUG00000012900) #17	PELI1 (ENSSPUG00000012897) #18	LGALSL (ENSSPUG00000012885) #19	ENSSPUG00000012880 #21	AFTPH (ENSSPUG00000012864) #20	SLC1A4 (ENSSPUG00000012843) #22	ENSSPUG00000012834 #23	RAB1A (ENSSPUG00000012822) #24	ACTR2 (ENSSPUG00000012816) #26	SPRED2 (ENSSPUG00000012741) #27
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544
Archosauria	ANCESTRAL SPECIES	29	ENSGT00550000074956 #7	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544
Aves	ANCESTRAL SPECIES	35	ENSGT00390000001607	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544
Neognathae	ANCESTRAL SPECIES	32	ENSGT00390000001607	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT01040000241398.a
Galloanserae	ANCESTRAL SPECIES	29	ENSGT00390000001607	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00390000001858 #21	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT01040000241398.a
Phasianidae	ANCESTRAL SPECIES	29	ENSGT00390000006820	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00390000001858 #21	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT01040000241398.a
Phasianidae_b	ANCESTRAL SPECIES	28	ENSGT00390000006820	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT01040000241398.a
Chicken	MODERN SPECIES	22	PPP1R21 (ENSGALG00010017797)	COMMD1 (ENSGALG00010017876) #8	B3GNT2 (ENSGALG00010017838) #9	TMEM17 (ENSGALG00010018880) #10	EHBP1 (ENSGALG00010016584) #11	OTX1 (ENSGALG00010016593) #12	WDPCP (ENSGALG00010016605) #13	MDH1 (ENSGALG00010016624) #15	UGP2 (ENSGALG00010018904) #16	VPS54 (ENSGALG00010018923) #17	PELI3 (ENSGALG00010018958) #18	LGALSL (ENSGALG00010017115) #19	AFTPH (ENSGALG00010017141) #20	ENSGALG00010017151 #21	SERTAD2 (ENSGALG00010019243)	SLC1A4 (ENSGALG00010019257) #22	CEP68 (ENSGALG00010017594) #23	RAB1B (ENSGALG00010017622) #24	ENSGALG00010017627	ACTR2 (ENSGALG00010016276) #26	SPRED2 (ENSGALG00010017672) #27	MEIS1 (ENSGALG00010017708) #28	ENSGALG00010017722	ENSGALG00010017728	ETAA1 (ENSGALG00010017744) #29	C1D (ENSGALG00010017755) #30	DNAAF10 (ENSGALG00010017766) #31	PNO1 (ENSGALG00010017771) #32	PPP3R1 (ENSGALG00010017778) #33	CNRIP1 (ENSGALG00010017787) #34	PLEK (ENSGALG00010017831) #35
Turkey	MODERN SPECIES	11	FOXN2 (ENSMGAG00000005062)	PPP1R21 (ENSMGAG00000004979)	COMMD1 (ENSMGAG00000005060) #8	B3GNT2 (ENSMGAG00000015914) #9	TMEM17 (ENSMGAG00000004966) #10	EHBP1 (ENSMGAG00000004927) #11	WDPCP (ENSMGAG00000004854) #13	MDH1 (ENSMGAG00000004885) #15	UGP2 (ENSMGAG00000004824) #16	VPS54 (ENSMGAG00000004768) #17	PELI1 (ENSMGAG00000019753) #18	LGALSL (ENSMGAG00000004734) #19	ENSMGAG00000019014 #21	AFTPH (ENSMGAG00000004693) #20	SERTAD2 (ENSMGAG00000015908)	SLC1A4 (ENSMGAG00000004682) #22	CEP68 (ENSMGAG00000004667) #23	RAB1A (ENSMGAG00000004611) #24	ENSMGAG00000019067	ACTR2 (ENSMGAG00000004587) #26	SPRED2 (ENSMGAG00000004563) #27	MEIS1 (ENSMGAG00000021593) #28	ENSMGAG00000004531 #29	DNAAF10 (ENSMGAG00000004517) #31	PNO1 (ENSMGAG00000004514) #32	PPP3R1 (ENSMGAG00000004474) #33	CNRIP1 (ENSMGAG00000004456) #34	PLEK (ENSMGAG00000004436) #35	FBXO48 (ENSMGAG00000004427) #36	ENSMGAG00000004419 #37	ENSMGAG00000018645
Japanese quail	MODERN SPECIES	21	SNRPB2 (ENSCJPG00005011807)	OTOR (ENSCJPG00005011805)	TMEM17 (ENSCJPG00005011798) #10	EHBP1 (ENSCJPG00005011795) #11	OTX1 (ENSCJPG00005011794) #12	WDPCP (ENSCJPG00005011776) #13	MDH1 (ENSCJPG00005011775) #15	UGP2 (ENSCJPG00005011774) #16	VPS54 (ENSCJPG00005011596) #17	PELI1 (ENSCJPG00005011590) #18	ENSCJPG00005011569 #19	ENSCJPG00005011568 #19	ENSCJPG00005011566 #21	AFTPH (ENSCJPG00005011562) #20	SERTAD2 (ENSCJPG00005011560)	SLC1A4 (ENSCJPG00005011555) #22	CEP68 (ENSCJPG00005011547) #23	RAB1A (ENSCJPG00005011546) #24	ACTR2 (ENSCJPG00005011545) #26	SPRED2 (ENSCJPG00005011544) #27	MEIS1 (ENSCJPG00005011532) #28	ENSCJPG00005011513 #29	C1D (ENSCJPG00005011500) #30	DNAAF10 (ENSCJPG00005011497) #31	PNO1 (ENSCJPG00005011496) #32	PPP3R1 (ENSCJPG00005011495) #33	CNRIP1 (ENSCJPG00005011494) #34	PLEK (ENSCJPG00005011490) #35	ENSCJPG00005011484 #37	ENSCJPG00005011483	ENSCJPG00005011482
Anatidae	ANCESTRAL SPECIES	60	ENSGT00390000001607	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00390000001858 #21	ENSGT00940000154186.a #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37
Duck	MODERN SPECIES	21	CRLS1 (ENSAPLG00000007013)	COMMD1 (ENSAPLG00000006974) #8	B3GNT2 (ENSAPLG00000001464) #9	TMEM17 (ENSAPLG00000006949) #10	EHBP1 (ENSAPLG00000006773) #11	OTX1 (ENSAPLG00000024184) #12	WDPCP (ENSAPLG00000010025) #13	MDH1 (ENSAPLG00000009983) #15	UGP2 (ENSAPLG00000009870) #16	VPS54 (ENSAPLG00000009734) #17	PELI1 (ENSAPLG00000009701) #18	LGALSL (ENSAPLG00000022507) #19	ENSAPLG00000017313 #21	AFTPH (ENSAPLG00000009640) #20	SERTAD2 (ENSAPLG00000000672)	SLC1A4 (ENSAPLG00000009621) #22	CEP68 (ENSAPLG00000016942) #23	RAB1A (ENSAPLG00000018342) #24	ACTR2 (ENSAPLG00000009440) #26	SPRED2 (ENSAPLG00000009387) #27	MEIS1 (ENSAPLG00000009141) #28	ENSAPLG00000025999 #29	C1D (ENSAPLG00000009320) #30	DNAAF10 (ENSAPLG00000029023) #31	PNO1 (ENSAPLG00000029102) #32	PPP3R1 (ENSAPLG00000023228) #33	CNRIP1 (ENSAPLG00000022779) #34	PLEK (ENSAPLG00000009140) #35	APLF (ENSAPLG00000009117) #37	RIN2 (ENSAPLG00000014865)	ENSAPLG00000024100
Pink-footed goose	MODERN SPECIES	155												PELI1 (ENSABRG00000002957) #18	LGALSL (ENSABRG00000002936) #19	AFTPH (ENSABRG00000002918) #20	SERTAD2 (ENSABRG00000002908)	SLC1A4 (ENSABRG00000002879) #22	CEP68 (ENSABRG00000002866) #23	RAB1A (ENSABRG00000002833) #24	ACTR2 (ENSABRG00000002811) #26	SPRED2 (ENSABRG00000002801) #27	MEIS1 (ENSABRG00000002723) #28	ENSABRG00000002656	ENSABRG00000002632	ENSABRG00000002625 #29	C1D (ENSABRG00000002604) #30	DNAAF10 (ENSABRG00000002587) #31	PNO1 (ENSABRG00000002566) #32	PPP3R1 (ENSABRG00000002543) #33	CNRIP1 (ENSABRG00000002531) #34	PLEK (ENSABRG00000002514) #35	FBXO48 (ENSABRG00000002508) #36
Neognathae_b	ANCESTRAL SPECIES	32	ENSGT00390000001607	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544
Passeriformes	ANCESTRAL SPECIES	31	ENSGT00390000001607	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544
Great tit	MODERN SPECIES	22	CRLS1 (ENSPMJG00000002831)	COMMD1 (ENSPMJG00000002828) #8	B3GNT2 (ENSPMJG00000002825) #9	TMEM17 (ENSPMJG00000002814) #10	EHBP1 (ENSPMJG00000002565) #11	OTX1 (ENSPMJG00000002556) #12	WDPCP (ENSPMJG00000002462) #13	MDH1 (ENSPMJG00000002452) #15	UGP2 (ENSPMJG00000002442) #16	VPS54 (ENSPMJG00000002369) #17	PELI1 (ENSPMJG00000002305) #18	LGALSL (ENSPMJG00000002274) #19	ENSPMJG00000002259 #21	AFTPH (ENSPMJG00000002220) #20	SERTAD2 (ENSPMJG00000002211)	SLC1A4 (ENSPMJG00000002145) #22	CEP68 (ENSPMJG00000002124) #23	RAB1A (ENSPMJG00000002113) #24	ACTR2 (ENSPMJG00000002085) #26	SPRED2 (ENSPMJG00000002067) #27	MEIS1 (ENSPMJG00000001854) #28	ENSPMJG00000001774 #29	C1D (ENSPMJG00000001708) #30	DNAAF10 (ENSPMJG00000001703) #31	PNO1 (ENSPMJG00000001695) #32	PPP3R1 (ENSPMJG00000001689) #33	CNRIP1 (ENSPMJG00000001670) #34	PLEK (ENSPMJG00000001665) #35	FBXO48 (ENSPMJG00000001663) #36	ENSPMJG00000001662	APLF (ENSPMJG00000001658) #37
Passeriformes_d	ANCESTRAL SPECIES	32	ENSGT00390000001607	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544
Flycatcher	MODERN SPECIES	21	CRLS1 (ENSFALG00000013583)	COMMD1 (ENSFALG00000013585) #8	ENSFALG00000014145 #9	TMEM17 (ENSFALG00000013589) #10	EHBP1 (ENSFALG00000013591) #11	OTX1 (ENSFALG00000013593) #12	WDPCP (ENSFALG00000013596) #13	MDH1 (ENSFALG00000013597) #15	UGP2 (ENSFALG00000013598) #16	VPS54 (ENSFALG00000013599) #17	PELI1 (ENSFALG00000013605) #18	LGALSL (ENSFALG00000013611) #19	AFTPH (ENSFALG00000013616) #20	ENSFALG00000028308 #21	SERTAD2 (ENSFALG00000014149)	SLC1A4 (ENSFALG00000013619) #22	CEP68 (ENSFALG00000013621) #23	RAB1A (ENSFALG00000023532) #24	ENSFALG00000027263	ACTR2 (ENSFALG00000026727) #26	SPRED2 (ENSFALG00000028802) #27	MEIS1 (ENSFALG00000013636) #28	ENSFALG00000013638 #29	C1D (ENSFALG00000024869) #30	PNO1 (ENSFALG00000029069) #32	WDR92 (ENSFALG00000028071) #31	PPP3R1 (ENSFALG00000013648) #33	CNRIP1 (ENSFALG00000027124) #34	PLEK (ENSFALG00000013650) #35	ENSFALG00000028459 #36	APLF (ENSFALG00000013652) #37
Passeriformes_g	ANCESTRAL SPECIES	42	ENSGT00390000001607	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544
Medium ground finch	MODERN SPECIES	99				TMEM17 (ENSGFOG00000011060) #10	EHBP1 (ENSGFOG00000011082) #11	OTX1 (ENSGFOG00000011126) #12	WDPCP (ENSGFOG00000011130) #13	MDH1 (ENSGFOG00000011139) #15	UGP2 (ENSGFOG00000011150) #16	VPS54 (ENSGFOG00000011155) #17	PELI1 (ENSGFOG00000007371) #18	LGALSL (ENSGFOG00000007383) #19	AFTPH (ENSGFOG00000007395) #20	ENSGFOG00000007408 #21	SERTAD2 (ENSGFOG00000007413)	SLC1A4 (ENSGFOG00000007417) #22	CEP68 (ENSGFOG00000007430) #23	RAB1A (ENSGFOG00000007437) #24	ACTR2 (ENSGFOG00000007444) #26	SPRED2 (ENSGFOG00000007456) #27	MEIS1 (ENSGFOG00000007474) #28	ENSGFOG00000007544 #29	C1D (ENSGFOG00000007555) #30	DNAAF10 (ENSGFOG00000007564) #31	PNO1 (ENSGFOG00000007572) #32	PPP3R1 (ENSGFOG00000007577) #33	CNRIP1 (ENSGFOG00000007585) #34	PLEK (ENSGFOG00000007591) #35	FBXO48 (ENSGFOG00000007610) #36	APLF (ENSGFOG00000007622) #37	ENSGFOG00000007636
Passeroidea	ANCESTRAL SPECIES	41	ENSGT00390000001607	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544
Zebra finch	MODERN SPECIES	23	CRLS1 (ENSTGUG00000002210)	COMMD1 (ENSTGUG00000002215) #8	B3GNT2 (ENSTGUG00000002218) #9	TMEM17 (ENSTGUG00000002226) #10	EHBP1 (ENSTGUG00000002228) #11	OTX1 (ENSTGUG00000019683) #12	WDPCP (ENSTGUG00000002232) #13	MDH1 (ENSTGUG00000002244) #15	UGP2 (ENSTGUG00000002252) #16	VPS54 (ENSTGUG00000002268) #17	PELI1 (ENSTGUG00000002289) #18	LGALSL (ENSTGUG00000025180) #19	ENSTGUG00000025533 #21	AFTPH (ENSTGUG00000002302) #20	SERTAD2 (ENSTGUG00000024469)	SLC1A4 (ENSTGUG00000002315) #22	CEP68 (ENSTGUG00000029210) #23	RAB1A (ENSTGUG00000002328) #24	ACTR2 (ENSTGUG00000002335) #26	SPRED2 (ENSTGUG00000025635) #27	MEIS1 (ENSTGUG00000002353) #28	ENSTGUG00000002363 #29	C1D (ENSTGUG00000029046) #30	DNAAF10 (ENSTGUG00000018213) #31	PNO1 (ENSTGUG00000002369) #32	PPP3R1 (ENSTGUG00000018231) #33	CNRIP1 (ENSTGUG00000021224) #34	PLEK (ENSTGUG00000002380) #35	FBXO48 (ENSTGUG00000026746) #36	APLF (ENSTGUG00000028592) #37	ENSTGUG00000028491
Common canary	MODERN SPECIES	38	TRMT6 (ENSSCAG00000000543)	MCM8 (ENSSCAG00000000614)	CRLS1 (ENSSCAG00000000633)	TMEM17 (ENSSCAG00000000656) #10	EHBP1 (ENSSCAG00000000669) #11	OTX1 (ENSSCAG00000000714) #12	WDPCP (ENSSCAG00000000727) #13	MDH1 (ENSSCAG00000000782) #15	UGP2 (ENSSCAG00000000799) #16	VPS54 (ENSSCAG00000000820) #17	PELI1 (ENSSCAG00000000846) #18	LGALSL (ENSSCAG00000000875) #19	AFTPH (ENSSCAG00000000895) #20	ENSSCAG00000000909 #21	SERTAD2 (ENSSCAG00000000919)	SLC1A4 (ENSSCAG00000000927) #22	CEP68 (ENSSCAG00000000934) #23	RAB1A (ENSSCAG00000000941) #24	ACTR2 (ENSSCAG00000000959) #26	SPRED2 (ENSSCAG00000000973) #27	MEIS1 (ENSSCAG00000000987) #28	ENSSCAG00000001007 #29	ENSSCAG00000001019 #29	C1D (ENSSCAG00000001030) #30	DNAAF10 (ENSSCAG00000001039) #31	PNO1 (ENSSCAG00000001058) #32	PPP3R1 (ENSSCAG00000001078) #33	CNRIP1 (ENSSCAG00000001087) #34	PLEK (ENSSCAG00000001096) #35	FBXO48 (ENSSCAG00000001107) #36
Neognathae_c	ANCESTRAL SPECIES	35	ENSGT00390000001607	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544
Kakapo	MODERN SPECIES	23	COMMD1 (ENSSHBG00005014933) #8	B3GNT2 (ENSSHBG00005014942) #9	TMEM17 (ENSSHBG00005014948) #10	EHBP1 (ENSSHBG00005014965) #11	OTX1 (ENSSHBG00005014991) #12	WDPCP (ENSSHBG00005015001) #13	MDH1 (ENSSHBG00005015017) #15	UGP2 (ENSSHBG00005015028) #16	VPS54 (ENSSHBG00005015051) #17	ENSSHBG00005015079	PELI1 (ENSSHBG00005015086) #18	LGALSL (ENSSHBG00005015090) #19	AFTPH (ENSSHBG00005015097) #20	ENSSHBG00005015104 #21	SERTAD2 (ENSSHBG00005015121)	SLC1A4 (ENSSHBG00005015130) #22	CEP68 (ENSSHBG00005015142) #23	RAB1A (ENSSHBG00005015159) #24	ACTR2 (ENSSHBG00005015166) #26	SPRED2 (ENSSHBG00005015173) #27	ENSSHBG00005015181	MEIS1 (ENSSHBG00005015189) #28	ENSSHBG00005015207 #29	C1D (ENSSHBG00005015222) #30	DNAAF10 (ENSSHBG00005015235) #31	PNO1 (ENSSHBG00005015242) #32	PPP3R1 (ENSSHBG00005015250) #33	CNRIP1 (ENSSHBG00005015258) #34	PLEK (ENSSHBG00005015261) #35	FBXO48 (ENSSHBG00005015269) #36	APLF (ENSSHBG00005015272) #37
Golden eagle	MODERN SPECIES	24	CRLS1 (ENSACCG00020005476)	COMMD1 (ENSACCG00020005501) #8	B3GNT2 (ENSACCG00020005515) #9	TMEM17 (ENSACCG00020005527) #10	EHBP1 (ENSACCG00020005580) #11	OTX1 (ENSACCG00020005656) #12	WDPCP (ENSACCG00020005678) #13	MDH1 (ENSACCG00020005699) #15	UGP2 (ENSACCG00020005728) #16	VPS54 (ENSACCG00020005801) #17	PELI1 (ENSACCG00020005906) #18	LGALSL (ENSACCG00020005930) #19	AFTPH (ENSACCG00020005956) #20	ENSACCG00020005980 #21	SERTAD2 (ENSACCG00020005994)	SLC1A4 (ENSACCG00020006005) #22	CEP68 (ENSACCG00020006029) #23	RAB1A (ENSACCG00020006051) #24	ACTR2 (ENSACCG00020006080) #26	SPRED2 (ENSACCG00020006109) #27	MEIS1 (ENSACCG00020006130) #28	ENSACCG00020006175 #29	C1D (ENSACCG00020006189) #30	DNAAF10 (ENSACCG00020006200) #31	PNO1 (ENSACCG00020006212) #32	PPP3R1 (ENSACCG00020006223) #33	CNRIP1 (ENSACCG00020006234) #34	PLEK (ENSACCG00020006245) #35	FBXO48 (ENSACCG00020006254) #36	APLF (ENSACCG00020006257) #37	ENSACCG00020006272
African ostrich	MODERN SPECIES	1035	TRMT6 (ENSSCUG00000016663)	MCM8 (ENSSCUG00000016665)	COMMD1 (ENSSCUG00000016672) #8	B3GNT2 (ENSSCUG00000016675) #9	TMEM17 (ENSSCUG00000016683) #10	EHBP1 (ENSSCUG00000016694) #11	WDPCP (ENSSCUG00000016705) #13	MDH1 (ENSSCUG00000016711) #15	UGP2 (ENSSCUG00000016718) #16	VPS54 (ENSSCUG00000016720) #17	PELI1 (ENSSCUG00000016725) #18	LGALSL (ENSSCUG00000016734) #19	AFTPH (ENSSCUG00000016739) #20	ENSSCUG00000016745 #21	SERTAD2 (ENSSCUG00000016748)	SLC1A4 (ENSSCUG00000016756) #22	ENSSCUG00000016764 #23	RAB1A (ENSSCUG00000016768) #24	ACTR2 (ENSSCUG00000016771) #26	SPRED2 (ENSSCUG00000016776) #27	ENSSCUG00000016785 #28	ENSSCUG00000016796 #29	C1D (ENSSCUG00000016803) #30	DNAAF10 (ENSSCUG00000016805) #31	PNO1 (ENSSCUG00000016819) #32	PPP3R1 (ENSSCUG00000016836) #33	CNRIP1 (ENSSCUG00000016838) #34	PLEK (ENSSCUG00000016840) #35	FBXO48 (ENSSCUG00000016842) #36	APLF (ENSSCUG00000016843) #37	ENSSCUG00000016844
Australian saltwater crocodile	MODERN SPECIES	60	CCT4 (ENSCPRG00005013168) #7	COMMD1 (ENSCPRG00005013164) #8	TMEM17 (ENSCPRG00005013145) #10	EHBP1 (ENSCPRG00005013126) #11	ENSCPRG00005013108	WDPCP (ENSCPRG00005013098) #13	MDH1 (ENSCPRG00005013087) #15	UGP2 (ENSCPRG00005013070) #16	VPS54 (ENSCPRG00005013060) #17	PELI1 (ENSCPRG00005013051) #18	ENSCPRG00005013039	LGALSL (ENSCPRG00005013037) #19	ENSCPRG00005013030 #21	AFTPH (ENSCPRG00005013021) #20	SERTAD2 (ENSCPRG00005013016)	SLC1A4 (ENSCPRG00005013000) #22	CEP68 (ENSCPRG00005012992) #23	RAB1A (ENSCPRG00005012987) #24	ENSCPRG00005012975	ACTR2 (ENSCPRG00005012952) #26	SPRED2 (ENSCPRG00005012941) #27	ENSCPRG00005012911	MEIS1 (ENSCPRG00005012878) #28	ENSCPRG00005012839 #29	C1D (ENSCPRG00005012813) #30	DNAAF10 (ENSCPRG00005012802) #31	PNO1 (ENSCPRG00005012776) #32	PPP3R1 (ENSCPRG00005012773) #33	CNRIP1 (ENSCPRG00005012769) #34	PLEK (ENSCPRG00005012755) #35	FBXO48 (ENSCPRG00005012746) #36
Cryptodira	ANCESTRAL SPECIES	49		ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544
Testudinoidea	ANCESTRAL SPECIES		ENSGT00940000162977	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544
Emydidae	ANCESTRAL SPECIES	41	ENSGT00940000162977	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a #20	ENSGT00390000001858 #21	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00950000183210.d.b	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	62	COMMD1 (ENSTMTG00000011699) #8	B3GNT2 (ENSTMTG00000011706) #9	TMEM17 (ENSTMTG00000011710) #10	EHBP1 (ENSTMTG00000011723) #11	OTX1 (ENSTMTG00000011768) #12	ENSTMTG00000011785 #13	ENSTMTG00000011798	MDH1 (ENSTMTG00000011807) #15	UGP2 (ENSTMTG00000011829) #16	VPS54 (ENSTMTG00000011848) #17	PELI1 (ENSTMTG00000011887) #18	LGALSL (ENSTMTG00000011905) #19	AFTPH (ENSTMTG00000011932) #20	ENSTMTG00000011985 #21	SERTAD2 (ENSTMTG00000012002)	ENSTMTG00000012010 #22	CEP68 (ENSTMTG00000012027) #23	RAB1A (ENSTMTG00000012038) #24	ACTR2 (ENSTMTG00000012053) #26	SPRED2 (ENSTMTG00000012084) #27	ENSTMTG00000012102	MEIS1 (ENSTMTG00000012126) #28	ENSTMTG00000012173	ENSTMTG00000012186 #29	ENSTMTG00000012204	C1D (ENSTMTG00000012215) #30	DNAAF10 (ENSTMTG00000012232) #31	PNO1 (ENSTMTG00000012253) #32	PPP3R1 (ENSTMTG00000012270) #33	CNRIP1 (ENSTMTG00000012284) #34	PLEK (ENSTMTG00000012307) #35
Three-toed box turtle	MODERN SPECIES	1017																ENSTMTG00000009257 #22
painted turtle	MODERN SPECIES	798	B3GNT2 (ENSCPBG00000009448) #9	TMEM17 (ENSCPBG00000009468) #10	ENSCPBG00000009473	EHBP1 (ENSCPBG00000009627) #11	OTX1 (ENSCPBG00000013188) #12	WDPCP (ENSCPBG00000013191) #13	MDH1 (ENSCPBG00000013198) #15	UGP2 (ENSCPBG00000013202) #16	VPS54 (ENSCPBG00000013204) #17	ENSCPBG00000013207	PELI1 (ENSCPBG00000013208) #18	LGALSL (ENSCPBG00000013218) #19	AFTPH (ENSCPBG00000013222) #20	ENSCPBG00000013228 #21	SERTAD2 (ENSCPBG00000013231)	SLC1A4 (ENSCPBG00000013236) #22	CEP68 (ENSCPBG00000013240) #23	RAB1A (ENSCPBG00000013243) #24	ACTR2 (ENSCPBG00000013248) #26	SPRED2 (ENSCPBG00000013250) #27	ENSCPBG00000013254	MEIS1 (ENSCPBG00000013258) #28
Testudinidae	ANCESTRAL SPECIES	6	ENSGT00390000012029 #8	ENSGT00940000155345 #9	ENSGT00940000153899.b.b #10	ENSGT00940000157597 #11	ENSGT00940000161234 #12	ENSGT00390000016551 #13	ENSGT00530000063410.a #15	ENSGT00940000153464.B #16	ENSGT00390000000583 #17	ENSGT00950000183050.b.b.a #18	ENSGT00940000155337 #19	ENSGT00940000154186.a.c #20	ENSGT00390000001858 #21	ENSGT00940000154186.a.d #20	ENSGT00530000063867.b	ENSGT00940000157081 #22	ENSGT00810000125473.A #23	ENSGT00940000154958 #24	ENSGT00940000154556 #26	ENSGT00940000156841 #27	ENSGT00940000156327 #28	ENSGT00390000009597 #29	ENSGT00390000015405 #30	ENSGT00950000183091.A.b #31	ENSGT00390000018052 #32	ENSGT00940000156530.c #33	ENSGT00390000004284 #34	ENSGT00940000157885 #35	ENSGT00390000012248 #36	ENSGT00390000010591 #37	ENSGT00940000154544
Abingdon island giant tortoise	MODERN SPECIES	2362															ENSCABG00000002163	SLC1A4 (ENSCABG00000002166) #22	ENSCABG00000002170	RAB1A (ENSCABG00000002171) #24	ACTR2 (ENSCABG00000002179) #26	SPRED2 (ENSCABG00000002328) #27	MEIS1 (ENSCABG00000002390) #28	ENSCABG00000002495 #28	ENSCABG00000002496 #29	C1D (ENSCABG00000002499) #30	DNAAF10 (ENSCABG00000002500) #31	ENSCABG00000002501 #32	PPP3R1 (ENSCABG00000002502) #33
Goode s thornscrub tortoise	MODERN SPECIES	17	COMMD1 (ENSGEVG00005009544) #8	B3GNT2 (ENSGEVG00005009523) #9	TMEM17 (ENSGEVG00005009491) #10	EHBP1 (ENSGEVG00005009124) #11	OTX1 (ENSGEVG00005009002) #12	ENSGEVG00005008975 #13	MDH1 (ENSGEVG00005004454) #15	UGP2 (ENSGEVG00005004320) #16	VPS54 (ENSGEVG00005004270) #17	PELI1 (ENSGEVG00005004247) #18	LGALSL (ENSGEVG00005004215) #19	ENSGEVG00005004188	ENSGEVG00005004165 #20	ENSGEVG00005004141 #20	SERTAD2 (ENSGEVG00005004127)	SLC1A4 (ENSGEVG00005004113) #22	CEP68 (ENSGEVG00005003967) #23	RAB1A (ENSGEVG00005003898) #24	ACTR2 (ENSGEVG00005003844) #26	SPRED2 (ENSGEVG00005003835) #27	MEIS1 (ENSGEVG00005003813) #28	ENSGEVG00005003795 #29	C1D (ENSGEVG00005003784) #30	DNAAF10 (ENSGEVG00005003777) #31	PNO1 (ENSGEVG00005003766) #32	PPP3R1 (ENSGEVG00005003753) #33	CNRIP1 (ENSGEVG00005003746) #34	PLEK (ENSGEVG00005003733) #35	FBXO48 (ENSGEVG00005003719) #36	APLF (ENSGEVG00005003695) #37	ENSGEVG00005003685
Chinese turtle	MODERN SPECIES	375		KIF16B (ENSPSIG00000009336)	COMMD1 (ENSPSIG00000013161) #8	B3GNT2 (ENSPSIG00000001211) #9	TMEM17 (ENSPSIG00000013175) #10	EHBP1 (ENSPSIG00000013180) #11	WDPCP (ENSPSIG00000013662) #13	MDH1 (ENSPSIG00000014797) #15	UGP2 (ENSPSIG00000015139) #16	VPS54 (ENSPSIG00000016091) #17	PELI1 (ENSPSIG00000017442) #18	ENSPSIG00000017632	LGALSL (ENSPSIG00000017748) #19	AFTPH (ENSPSIG00000017890) #20	SERTAD2 (ENSPSIG00000017893)	SLC1A4 (ENSPSIG00000017947) #22	CEP68 (ENSPSIG00000007957) #23	RAB1A (ENSPSIG00000008028) #24	ACTR2 (ENSPSIG00000008124) #26	SPRED2 (ENSPSIG00000008800) #27	MEIS1 (ENSPSIG00000009187) #28	ENSPSIG00000001224	ENSPSIG00000009822 #29	ENSPSIG00000001231	C1D (ENSPSIG00000010015) #30	DNAAF10 (ENSPSIG00000010344) #31	PNO1 (ENSPSIG00000010533) #32	PPP3R1 (ENSPSIG00000010550) #33	CNRIP1 (ENSPSIG00000010556) #34	PLEK (ENSPSIG00000010697) #35	FBXO48 (ENSPSIG00000011431) #36