Laurasiatheria	ANCESTRAL SPECIES	15	ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b #11	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000164486	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00940000163125	ENSGT00950000182993.A.a #34	ENSGT00550000075134 #35
Laurasiatheria_a	ANCESTRAL SPECIES	19	ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b #11	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000164486	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00940000163389	ENSGT00950000182993.A.a #34	ENSGT00940000163125
Artiodactyla	ANCESTRAL SPECIES	23	ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b #11	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000164486	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00940000163389	ENSGT00950000182993.A.a #34	ENSGT00940000163125	ENSGT00550000075134 #35
Artiodactyla_a	ANCESTRAL SPECIES	24	ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b #11	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000164486	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00940000163389	ENSGT00950000182993.A.a #34	ENSGT00940000163125	ENSGT00550000075134 #35
Artiodactyla_b	ANCESTRAL SPECIES	25	ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b #11	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000164486	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00940000163125	ENSGT00950000182993.A.a #34	ENSGT00550000075134 #35	ENSGT00390000016128
Cetacea	ANCESTRAL SPECIES	1	ENSGT00940000159125 #7	ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b #11	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00940000163389	ENSGT00950000182993.A.a #34	ENSGT00550000075134 #35	ENSGT00390000016128
Blue whale	MODERN SPECIES	14	VAV1 (ENSBMSG00010002016) #7	SH2D3A (ENSBMSG00010002526) #8	TRIP10 (ENSBMSG00010002548) #9	GPR108 (ENSBMSG00010002591) #10	C3 (ENSBMSG00010002651) #11	TNFSF14 (ENSBMSG00010002703) #12	CD70 (ENSBMSG00010002710) #13	TNFSF9 (ENSBMSG00010002721) #14	TUBB4A (ENSBMSG00010002735) #15	DENND1C (ENSBMSG00010002755) #16	CRB3 (ENSBMSG00010002780) #17	SLC25A23 (ENSBMSG00010002792) #18	SLC25A41 (ENSBMSG00010002804) #19	KHSRP (ENSBMSG00010002829) #20	ENSBMSG00010002906 #21	GTF2F1 (ENSBMSG00010002943) #22	PSPN (ENSBMSG00010002965) #23	ALKBH7 (ENSBMSG00010002973) #24	CLPP (ENSBMSG00010002982) #25	ACER1 (ENSBMSG00010002999) #26	MLLT1 (ENSBMSG00010003015) #27	ACSBG2 (ENSBMSG00010003047) #28	RFX2 (ENSBMSG00010003099) #29	RANBP3 (ENSBMSG00010003161) #30	CAPS (ENSBMSG00010003225) #31	VMAC (ENSBMSG00010003235) #32	NDUFA11 (ENSBMSG00010003243) #33	NRTN (ENSBMSG00010003262) #34	DUS3L (ENSBMSG00010003289) #35	CATSPERD (ENSBMSG00010003335) #36	LONP1 (ENSBMSG00010003368) #37
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00940000161354	ENSGT00940000159125 #7	ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b #11	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00940000163389	ENSGT00950000182993.A.a #34	ENSGT00550000075134 #35	ENSGT00390000016128
Sperm whale	MODERN SPECIES	632																GTF2F1 (ENSPCTG00005020118) #22	PSPN (ENSPCTG00005020148) #23	ALKBH7 (ENSPCTG00005020172) #24
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00940000161354	ENSGT00940000159125 #7	ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b #11	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00940000163389	ENSGT00950000182993.A.a #34	ENSGT00550000075134 #35	ENSGT00390000016128
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00940000159125 #7	ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b #11	ENSGT00940000157061.b	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00940000163389	ENSGT00950000182993.A.a #34	ENSGT00550000075134 #35	ENSGT00390000016128
Monodontidae	ANCESTRAL SPECIES	17	ENSGT00940000159125 #7	ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b #11	ENSGT00940000157061.b	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00940000163389	ENSGT00950000182993.A.a #34	ENSGT00550000075134 #35	ENSGT00390000016128
Narwhal	MODERN SPECIES	298	VAV1 (ENSMMNG00015016847) #7	SH2D3A (ENSMMNG00015016722) #8	TRIP10 (ENSMMNG00015016642) #9	GPR108 (ENSMMNG00015016574) #10	C3 (ENSMMNG00015016478) #11	ENSMMNG00015016434	TNFSF14 (ENSMMNG00015016417) #12	CD70 (ENSMMNG00015016394) #13	TNFSF9 (ENSMMNG00015016367) #14	TUBB4A (ENSMMNG00015016340) #15	DENND1C (ENSMMNG00015016214) #16	CRB3 (ENSMMNG00015016166) #17	SLC25A23 (ENSMMNG00015016105) #18	KHSRP (ENSMMNG00015015884) #20	ENSMMNG00015015791 #21	GTF2F1 (ENSMMNG00015015754) #22	PSPN (ENSMMNG00015015733) #23	ALKBH7 (ENSMMNG00015015715) #24	CLPP (ENSMMNG00015015685) #25	ACER1 (ENSMMNG00015015665) #26	MLLT1 (ENSMMNG00015015635) #27	ACSBG2 (ENSMMNG00015004690) #28	RFX2 (ENSMMNG00015004665) #29	RANBP3 (ENSMMNG00015004623) #30	CAPS (ENSMMNG00015004589) #31	VMAC (ENSMMNG00015004582) #32	NDUFA11 (ENSMMNG00015004575) #33	ENSMMNG00015004569	NRTN (ENSMMNG00015004563) #34	DUS3L (ENSMMNG00015004546) #35	PRR22 (ENSMMNG00015004516)
Beluga whale	MODERN SPECIES	62	SH2D3A (ENSDLEG00000013440) #8	TRIP10 (ENSDLEG00000013465) #9	GPR108 (ENSDLEG00000013487) #10	C3 (ENSDLEG00000013524) #11	TNFSF14 (ENSDLEG00000013733) #12	CD70 (ENSDLEG00000013745) #13	ENSDLEG00000013797	ENSDLEG00000013807 #14	TUBB4A (ENSDLEG00000013810) #15	ENSDLEG00000013828 #16	ENSDLEG00000013892 #16	CRB3 (ENSDLEG00000013951) #17	SLC25A23 (ENSDLEG00000013960) #18	KHSRP (ENSDLEG00000013980) #20	ENSDLEG00000014038 #21	GTF2F1 (ENSDLEG00000014057) #22	PSPN (ENSDLEG00000014081) #23	ALKBH7 (ENSDLEG00000014092) #24	CLPP (ENSDLEG00000014104) #25	ACER1 (ENSDLEG00000014123) #26	MLLT1 (ENSDLEG00000014165) #27	ACSBG2 (ENSDLEG00000014214) #28	RFX2 (ENSDLEG00000014418) #29	RANBP3 (ENSDLEG00000014487) #30	CAPS (ENSDLEG00000014540) #31	VMAC (ENSDLEG00000014555) #32	NDUFA11 (ENSDLEG00000014563) #33	NRTN (ENSDLEG00000014575) #34	DUS3L (ENSDLEG00000014609) #35	CATSPERD (ENSDLEG00000014692) #36	LONP1 (ENSDLEG00000014745) #37
Vaquita	MODERN SPECIES	14	VAV1 (ENSPSNG00000006761) #7	SH2D3A (ENSPSNG00000006525) #8	TRIP10 (ENSPSNG00000006457) #9	GPR108 (ENSPSNG00000006373) #10	C3 (ENSPSNG00000006189) #11	ENSPSNG00000006157	TNFSF14 (ENSPSNG00000006140) #12	ENSPSNG00000006109 #13	ENSPSNG00000006095 #14	TUBB4A (ENSPSNG00000005996) #15	DENND1C (ENSPSNG00000019480) #16	CRB3 (ENSPSNG00000019435) #17	SLC25A23 (ENSPSNG00000019375) #18	KHSRP (ENSPSNG00000019110) #20	ENSPSNG00000019013 #21	GTF2F1 (ENSPSNG00000018932) #22	ALKBH7 (ENSPSNG00000018862) #24	CLPP (ENSPSNG00000018810) #25	ACER1 (ENSPSNG00000018752) #26	MLLT1 (ENSPSNG00000018623) #27	ACSBG2 (ENSPSNG00000018336) #28	RFX2 (ENSPSNG00000018253) #29	RANBP3 (ENSPSNG00000018114) #30	CAPS (ENSPSNG00000018005) #31	VMAC (ENSPSNG00000017974) #32	NDUFA11 (ENSPSNG00000017931) #33	NRTN (ENSPSNG00000017905) #34	DUS3L (ENSPSNG00000017805) #35	PRR22 (ENSPSNG00000017752)	CATSPERD (ENSPSNG00000017551) #36	LONP1 (ENSPSNG00000017242) #37
Dolphin	MODERN SPECIES	1801													SLC25A41 (ENSTTRG00000010398) #19	KHSRP (ENSTTRG00000010390) #20	ENSTTRG00000010383 #21	GTF2F1 (ENSTTRG00000010373) #22	PSPN (ENSTTRG00000010346) #23	ALKBH7 (ENSTTRG00000010344) #24	CLPP (ENSTTRG00000010335) #25
Pecora	ANCESTRAL SPECIES		ENSGT00940000159125 #7	ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b #11	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000164486	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00940000163125	ENSGT00950000182993.A.a #34	ENSGT00550000075134 #35	ENSGT00390000016128
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	32	ADGRE1 (ENSCHYG00000013389)	VAV1 (ENSCHYG00000013476) #7	SH2D3A (ENSCHYG00000014306) #8	TRIP10 (ENSCHYG00000014436) #9	GPR108 (ENSCHYG00000014861) #10	C3 (ENSCHYG00000015491) #11	TNFSF14 (ENSCHYG00000016323) #12	CD70 (ENSCHYG00000016394) #13	ENSCHYG00000016453 #14	ENSCHYG00000016483	TUBB4A (ENSCHYG00000016548) #15	DENND1C (ENSCHYG00000016610) #16	CRB3 (ENSCHYG00000016801) #17	SLC25A23 (ENSCHYG00000016841) #18	KHSRP (ENSCHYG00000017189) #20	ENSCHYG00000019841 #22	PSPN (ENSCHYG00000019928) #23	ALKBH7 (ENSCHYG00000019961) #24	CLPP (ENSCHYG00000020020) #25	ACER1 (ENSCHYG00000020198) #26	MLLT1 (ENSCHYG00000020253) #27	ACSBG2 (ENSCHYG00000020499) #28	ENSCHYG00000020848 #22	RFX2 (ENSCHYG00000020941) #29	RANBP3 (ENSCHYG00000021150) #30	CAPS (ENSCHYG00000021783) #31	VMAC (ENSCHYG00000021843) #32	NDUFA11 (ENSCHYG00000021871) #33	ENSCHYG00000021955	NRTN (ENSCHYG00000021980) #34	DUS3L (ENSCHYG00000000481) #35
Yarkand deer	MODERN SPECIES	32	TINCR (ENSCHYG00000000759)	SAFB2 (ENSCHYG00000000733)	ENSCHYG00000000705	MICOS13 (ENSCHYG00000000687)	HSD11B1L (ENSCHYG00000000636)	LONP1 (ENSCHYG00000000595) #37	PRR22 (ENSCHYG00000000509)	DUS3L (ENSCHYG00000000481) #35	NRTN (ENSCHYG00000021980) #34	ENSCHYG00000021955	NDUFA11 (ENSCHYG00000021871) #33	VMAC (ENSCHYG00000021843) #32	CAPS (ENSCHYG00000021783) #31	RANBP3 (ENSCHYG00000021150) #30	RFX2 (ENSCHYG00000020941) #29	ENSCHYG00000020848 #22	ACSBG2 (ENSCHYG00000020499) #28	MLLT1 (ENSCHYG00000020253) #27	ACER1 (ENSCHYG00000020198) #26	CLPP (ENSCHYG00000020020) #25	ALKBH7 (ENSCHYG00000019961) #24	PSPN (ENSCHYG00000019928) #23	ENSCHYG00000019841 #22	KHSRP (ENSCHYG00000017189) #20	SLC25A23 (ENSCHYG00000016841) #18	CRB3 (ENSCHYG00000016801) #17	DENND1C (ENSCHYG00000016610) #16	TUBB4A (ENSCHYG00000016548) #15	ENSCHYG00000016483	ENSCHYG00000016453 #14	CD70 (ENSCHYG00000016394) #13
Percora_a	ANCESTRAL SPECIES		ENSGT00940000159125 #7	ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b #11	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000164486	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00940000163125	ENSGT00950000182993.A.a #34	ENSGT00550000075134 #35	ENSGT00390000016128
Siberian musk deer	MODERN SPECIES	99	TRIP10 (ENSMMSG00000007373) #9	GPR108 (ENSMMSG00000007474) #10	C3 (ENSMMSG00000007580) #11	TNFSF14 (ENSMMSG00000007629) #12	CD70 (ENSMMSG00000007672) #13	ENSMMSG00000007708	ENSMMSG00000007741	TNFSF9 (ENSMMSG00000007760) #14	ENSMMSG00000007773	TUBB4A (ENSMMSG00000007812) #15	DENND1C (ENSMMSG00000007861) #16	ENSMMSG00000008095 #17	SLC25A23 (ENSMMSG00000008146) #18	SLC25A41 (ENSMMSG00000008181) #19	KHSRP (ENSMMSG00000008232) #20	GTF2F1 (ENSMMSG00000008317) #22	PSPN (ENSMMSG00000008350) #23	ALKBH7 (ENSMMSG00000008382) #24	CLPP (ENSMMSG00000008431) #25	ACER1 (ENSMMSG00000008449) #26	MLLT1 (ENSMMSG00000008480) #27	ACSBG2 (ENSMMSG00000008549) #28	RFX2 (ENSMMSG00000008753) #29	ENSMMSG00000008883	RANBP3 (ENSMMSG00000008928) #30	CAPS (ENSMMSG00000009082) #31	VMAC (ENSMMSG00000009134) #32	NDUFA11 (ENSMMSG00000009156) #33	NRTN (ENSMMSG00000009181) #34	ENSMMSG00000009212	DUS3L (ENSMMSG00000009249) #35
Bovidae	ANCESTRAL SPECIES		ENSGT00940000159125 #7	ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b #11	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000164486	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00940000163125	ENSGT00950000182993.A.a #34	ENSGT00550000075134 #35	ENSGT00390000016128
Bovinae	ANCESTRAL SPECIES	2	ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b #11	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000164486	ENSGT00940000161972 #15	ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.b	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00940000163125	ENSGT00950000182993.A.a #34	ENSGT00550000075134 #35	ENSGT00390000016128
Bos	ANCESTRAL SPECIES	3	ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b #11	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000164486	ENSGT00940000161972 #15	ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.b	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00940000163125	ENSGT00950000182993.A.a #34	ENSGT00550000075134 #35	ENSGT00390000016128
Bos_a	ANCESTRAL SPECIES	2	ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b #11	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000164486	ENSGT00940000161972 #15	ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.b	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00940000163125	ENSGT00950000182993.A.a #34	ENSGT00550000075134 #35	ENSGT00390000016128
Wild yak	MODERN SPECIES	1315					TNFSF14 (ENSBMUG00000000453) #12	CD70 (ENSBMUG00000000433) #13	ENSBMUG00000000418 #14	ENSBMUG00000000397	ENSBMUG00000000375	TUBB4A (ENSBMUG00000000367) #15	DENND1C (ENSBMUG00000000321) #16	CRB3 (ENSBMUG00000000168) #17	SLC25A23 (ENSBMUG00000000133) #18	SLC25A41 (ENSBMUG00000026037) #19	KHSRP (ENSBMUG00000026034) #20	GTF2F1 (ENSBMUG00000026031) #22	PSPN (ENSBMUG00000026028) #23	ALKBH7 (ENSBMUG00000026025) #24	CLPP (ENSBMUG00000026023) #25	ACER1 (ENSBMUG00000026018) #26
Domestic yak	MODERN SPECIES	27	SH2D3A (ENSBGRG00000025904) #8	TRIP10 (ENSBGRG00000025920) #9	GPR108 (ENSBGRG00000025958) #10	C3 (ENSBGRG00000025983) #11	TNFSF14 (ENSBGRG00000025997) #12	CD70 (ENSBGRG00000026005) #13	ENSBGRG00000026014 #14	ENSBGRG00000026022	TUBB4A (ENSBGRG00000026030) #15	ENSBGRG00000000364	DENND1C (ENSBGRG00000000393) #16	CRB3 (ENSBGRG00000000409) #17	SLC25A23 (ENSBGRG00000000430) #18	SLC25A41 (ENSBGRG00000000480) #19	KHSRP (ENSBGRG00000000517) #20	GTF2F1 (ENSBGRG00000000661) #22	PSPN (ENSBGRG00000000694) #23	ALKBH7 (ENSBGRG00000000719) #24	CLPP (ENSBGRG00000000753) #25	ACER1 (ENSBGRG00000000765) #26	MLLT1 (ENSBGRG00000000789) #27	ENSBGRG00000000819	ACSBG2 (ENSBGRG00000000844) #28	RFX2 (ENSBGRG00000000923) #29	ENSBGRG00000000938	RANBP3 (ENSBGRG00000000978) #30	CAPS (ENSBGRG00000001193) #31	VMAC (ENSBGRG00000001217) #32	NDUFA11 (ENSBGRG00000001226) #33	ENSBGRG00000001243	ENSBGRG00000001255
Bos_b	ANCESTRAL SPECIES	2	ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b #11	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000164486	ENSGT00940000161972 #15	ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.b	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00940000163125	ENSGT00950000182993.A.a #34	ENSGT00550000075134 #35	ENSGT00390000016128
Hybrid Bos Indicus	MODERN SPECIES	26	SH2D3A (ENSBIXG00005011216) #8	TRIP10 (ENSBIXG00005001055) #9	GPR108 (ENSBIXG00005011263) #10	C3 (ENSBIXG00005001069) #11	TNFSF14 (ENSBIXG00005011303) #12	CD70 (ENSBIXG00005011321) #13	TNFSF9 (ENSBIXG00005001080) #14	ENSBIXG00005001088	ENSBIXG00005011344	TUBB4A (ENSBIXG00005001091) #15	DENND1C (ENSBIXG00005011411) #16	CRB3 (ENSBIXG00005000466) #17	SLC25A23 (ENSBIXG00005011521) #18	SLC25A41 (ENSBIXG00005011565) #19	KHSRP (ENSBIXG00005011664) #20	GTF2F1 (ENSBIXG00005001151) #22	PSPN (ENSBIXG00005011696) #23	ALKBH7 (ENSBIXG00005011712) #24	CLPP (ENSBIXG00005011763) #25	ACER1 (ENSBIXG00005005477) #26	MLLT1 (ENSBIXG00005001179) #27	ACSBG2 (ENSBIXG00005001189) #28	ENSBIXG00005011901	RFX2 (ENSBIXG00005012097) #29	ENSBIXG00005000272 #31	NDUFA11 (ENSBIXG00005012200) #33	ENSBIXG00005001267	NRTN (ENSBIXG00005012230) #34	DUS3L (ENSBIXG00005012323) #35	CATSPERD (ENSBIXG00005012388) #36	LONP1 (ENSBIXG00005001346) #37
Cow	MODERN SPECIES	26	SH2D3A (ENSBTAG00000013857) #8	TRIP10 (ENSBTAG00000047424) #9	GPR108 (ENSBTAG00000017291) #10	C3 (ENSBTAG00000017280) #11	TNFSF14 (ENSBTAG00000012223) #12	CD70 (ENSBTAG00000009752) #13	TNFSF9 (ENSBTAG00000046266) #14	ENSBTAG00000054505	TUBB4A (ENSBTAG00000021013) #15	ENSBTAG00000051810	DENND1C (ENSBTAG00000031809) #16	CRB3 (ENSBTAG00000051530) #17	SLC25A23 (ENSBTAG00000003491) #18	SLC25A41 (ENSBTAG00000020017) #19	KHSRP (ENSBTAG00000021018) #20	GTF2F1 (ENSBTAG00000021016) #22	PSPN (ENSBTAG00000031794) #23	ALKBH7 (ENSBTAG00000025540) #24	CLPP (ENSBTAG00000014712) #25	ACER1 (ENSBTAG00000008095) #26	MLLT1 (ENSBTAG00000002277) #27	ENSBTAG00000049278 #28	ACSBG2 (ENSBTAG00000009105) #28	RFX2 (ENSBTAG00000017661) #29	RANBP3 (ENSBTAG00000006070) #30	CAPS (ENSBTAG00000006069) #31	VMAC (ENSBTAG00000006067) #32	NDUFA11 (ENSBTAG00000019025) #33	FUT6 (ENSBTAG00000000414)	NRTN (ENSBTAG00000000413) #34	DUS3L (ENSBTAG00000011842) #35
American bison	MODERN SPECIES	3349	VAV1 (ENSBBBG00000020126) #7	SH2D3A (ENSBBBG00000020159) #8	TRIP10 (ENSBBBG00000005456) #9	ENSBBBG00000005466 #10	C3 (ENSBBBG00000008781) #11	TNFSF14 (ENSBBBG00000007961) #12	CD70 (ENSBBBG00000020534) #13	ENSBBBG00000007050	TUBB4A (ENSBBBG00000000506) #15	ENSBBBG00000020590	DENND1C (ENSBBBG00000007187) #16	CRB3 (ENSBBBG00000020657) #17	SLC25A23 (ENSBBBG00000020672) #18	SLC25A41 (ENSBBBG00000020681) #19	KHSRP (ENSBBBG00000008202) #20	GTF2F1 (ENSBBBG00000020826) #22	ALKBH7 (ENSBBBG00000020847) #24	ENSBBBG00000008371 #23	CLPP (ENSBBBG00000020882) #25	ENSBBBG00000005623 #26	MLLT1 (ENSBBBG00000020959) #27	ACSBG2 (ENSBBBG00000021028) #28	RFX2 (ENSBBBG00000007387) #29	RANBP3 (ENSBBBG00000021259) #30	CAPS (ENSBBBG00000008402) #31	ENSBBBG00000021299 #32	NDUFA11 (ENSBBBG00000021309) #33	ENSBBBG00000021316	NRTN (ENSBBBG00000021324) #34	DUS3L (ENSBBBG00000021385) #35	CATSPERD (ENSBBBG00000005716) #36
Caprinae	ANCESTRAL SPECIES	3	ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b #11	ENSGT01060000248544.a.a.b.a.a.d #12	ENSGT01060000248544.a.a.b.a.a.c #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000164486	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00550000075134 #35	ENSGT00390000016128	ENSGT00940000162714 #36	ENSGT00530000063553.b.a #37
Rambouillet Sheep	MODERN SPECIES	21	GPR108 (ENSOARG00020016672) #10	C3 (ENSOARG00020016763) #11	ENSOARG00020016803 #12	ENSOARG00020016859	ENSOARG00020017608	ENSOARG00020018946 #12	CD70 (ENSOARG00020019022) #13	ENSOARG00020019063 #14	ENSOARG00020019106	TUBB4A (ENSOARG00020019161) #15	DENND1C (ENSOARG00020019197) #16	CRB3 (ENSOARG00020019269) #17	SLC25A23 (ENSOARG00020019333) #18	SLC25A41 (ENSOARG00020019425) #19	KHSRP (ENSOARG00020019494) #20	GTF2F1 (ENSOARG00020019647) #22	PSPN (ENSOARG00020019711) #23	ALKBH7 (ENSOARG00020019744) #24	CLPP (ENSOARG00020019811) #25	ACER1 (ENSOARG00020019869) #26	MLLT1 (ENSOARG00020019921) #27	ENSOARG00020020028	ACSBG2 (ENSOARG00020020054) #28	RFX2 (ENSOARG00020020257) #29	RANBP3 (ENSOARG00020020564) #30	CAPS (ENSOARG00020020769) #31	VMAC (ENSOARG00020020817) #32	NDUFA11 (ENSOARG00020020850) #33	ENSOARG00020020891	NRTN (ENSOARG00020020907) #34	DUS3L (ENSOARG00020020943) #35
Goat	DUPLICATION
Goat	MODERN SPECIES	26	ADGRE1 (ENSCHIG00000021647)	VAV1 (ENSCHIG00000011155) #7	SH2D3A (ENSCHIG00000025393) #8	TRIP10 (ENSCHIG00000022584) #9	GPR108 (ENSCHIG00000009700) #10	C3 (ENSCHIG00000008320) #11	TNFSF14 (ENSCHIG00000020880) #12	ENSCHIG00000026611 #13	ENSCHIG00000004302 #14	TUBB4A (ENSCHIG00000020195) #15	DENND1C (ENSCHIG00000017569) #16	CRB3 (ENSCHIG00000023021) #17	SLC25A23 (ENSCHIG00000008013) #18	SLC25A41 (ENSCHIG00000017363) #19	KHSRP (ENSCHIG00000027053) #20	ENSCHIG00000011986 #22	PSPN (ENSCHIG00000018638) #23	ALKBH7 (ENSCHIG00000024761) #24	CLPP (ENSCHIG00000023189) #25	ACER1 (ENSCHIG00000008361) #26	ENSCHIG00000016868	MLLT1 (ENSCHIG00000022842) #27	ACSBG2 (ENSCHIG00000016276) #28	RFX2 (ENSCHIG00000023052) #29	RANBP3 (ENSCHIG00000021064) #30	CAPS (ENSCHIG00000022459) #31	VMAC (ENSCHIG00000004574) #32	NDUFA11 (ENSCHIG00000021213) #33	PRR22 (ENSCHIG00000022206)	DUS3L (ENSCHIG00000021327) #35	LONP1 (ENSCHIG00000003365) #37
Goat	MODERN SPECIES		EIF2B5 (ENSCHIG00000026144)	DVL3 (ENSCHIG00000013014)	AP2M1 (ENSCHIG00000018814)	ABCF3 (ENSCHIG00000018349)	VWA5B2 (ENSCHIG00000007439)	ALG3 (ENSCHIG00000015770)	CAMK2N2 (ENSCHIG00000018201)	ECE2 (ENSCHIG00000012826)	PSMD2 (ENSCHIG00000016997)	EIF4G1 (ENSCHIG00000009775)	FAM131A (ENSCHIG00000015881)	CLCN2 (ENSCHIG00000012282)	POLR2H (ENSCHIG00000006695)	THPO (ENSCHIG00000017758)	CHRD (ENSCHIG00000011375)	ENSCHIG00000020124 #22	ENSCHIG00000009628	EPHB3 (ENSCHIG00000005276)	MAGEF1 (ENSCHIG00000018285)	ENSCHIG00000010591	VPS8 (ENSCHIG00000011920)	C3orf70 (ENSCHIG00000017215)	ENSCHIG00000006056	EHHADH (ENSCHIG00000010352)	MAP3K13 (ENSCHIG00000015662)	ENSCHIG00000003347	LIPH (ENSCHIG00000014282)	ENSCHIG00000018521	IGF2BP2 (ENSCHIG00000015258)	ENSCHIG00000018541	ENSCHIG00000014097
Camelidae	ANCESTRAL SPECIES	36																ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00940000163125	ENSGT00950000182993.A.a #34	ENSGT00550000075134 #35	ENSGT00390000016128
Arabian camel	MODERN SPECIES	14	ADGRE1 (ENSCDRG00005017351)	VAV1 (ENSCDRG00005017664) #7	SH2D3A (ENSCDRG00005017906) #8	TRIP10 (ENSCDRG00005017930) #9	GPR108 (ENSCDRG00005017978) #10	C3 (ENSCDRG00005018821) #11	TNFSF14 (ENSCDRG00005021938) #12	CD70 (ENSCDRG00005021939) #13	TUBB4A (ENSCDRG00005021940) #15	DENND1C (ENSCDRG00005021941) #16	CRB3 (ENSCDRG00005021942) #17	SLC25A23 (ENSCDRG00005021943) #18	SLC25A41 (ENSCDRG00005021944) #19	KHSRP (ENSCDRG00005021945) #20	ENSCDRG00005021946 #21	GTF2F1 (ENSCDRG00005021947) #22	PSPN (ENSCDRG00005021948) #23	ALKBH7 (ENSCDRG00005021949) #24	CLPP (ENSCDRG00005021950) #25	ACER1 (ENSCDRG00005021951) #26	MLLT1 (ENSCDRG00005021952) #27	ACSBG2 (ENSCDRG00005021953) #28	RFX2 (ENSCDRG00005021955) #29	RANBP3 (ENSCDRG00005021957) #30	CAPS (ENSCDRG00005021958) #31	VMAC (ENSCDRG00005021959) #32	NDUFA11 (ENSCDRG00005021961) #33	ENSCDRG00005021962	NRTN (ENSCDRG00005021964) #34	DUS3L (ENSCDRG00005021966) #35	PRR22 (ENSCDRG00005021969)
Suina	ANCESTRAL SPECIES	16	ENSGT00940000161354	ENSGT00940000159125 #7	ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b #11	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00940000163125	ENSGT00950000182993.A.a #34	ENSGT00550000075134 #35	ENSGT00390000016128
Chacoan peccary	MODERN SPECIES	770	ADGRE1 (ENSCWAG00000010899)	VAV1 (ENSCWAG00000009741) #7	SH2D3A (ENSCWAG00000009467) #8	TRIP10 (ENSCWAG00000009207) #9	GPR108 (ENSCWAG00000009134) #10	C3 (ENSCWAG00000008783) #11	TNFSF14 (ENSCWAG00000008731) #12	CD70 (ENSCWAG00000008679) #13	TNFSF9 (ENSCWAG00000008641) #14	TUBB4A (ENSCWAG00000008574) #15	DENND1C (ENSCWAG00000008209) #16	CRB3 (ENSCWAG00000008071) #17	SLC25A23 (ENSCWAG00000007971) #18	SLC25A41 (ENSCWAG00000007889) #19	KHSRP (ENSCWAG00000017455) #20	GTF2F1 (ENSCWAG00000017421) #22	PSPN (ENSCWAG00000017389) #23	ALKBH7 (ENSCWAG00000017346) #24	CLPP (ENSCWAG00000017303) #25	ACER1 (ENSCWAG00000017254) #26	MLLT1 (ENSCWAG00000017206) #27	ACSBG2 (ENSCWAG00000016992) #28	RFX2 (ENSCWAG00000016768) #29	RANBP3 (ENSCWAG00000016644) #30	CAPS (ENSCWAG00000016575) #31	VMAC (ENSCWAG00000016538) #32	NDUFA11 (ENSCWAG00000016483) #33	ENSCWAG00000016466	NRTN (ENSCWAG00000016434) #34	DUS3L (ENSCWAG00000016362) #35	PRR22 (ENSCWAG00000016306)
Pig	MODERN SPECIES	10	SH2D3A (ENSSSCG00000022380) #8	TRIP10 (ENSSSCG00000013554) #9	GPR108 (ENSSSCG00000013552) #10	C3 (ENSSSCG00000013551) #11	TNFSF14 (ENSSSCG00000026695) #12	ENSSSCG00000024275	ENSSSCG00000060067	CD70 (ENSSSCG00000031115) #13	TNFSF9 (ENSSSCG00000022370) #14	TUBB4A (ENSSSCG00000013545) #15	DENND1C (ENSSSCG00000013546) #16	CRB3 (ENSSSCG00000051897) #17	SLC25A23 (ENSSSCG00000013550) #18	SLC25A41 (ENSSSCG00000032785) #19	KHSRP (ENSSSCG00000013538) #20	GTF2F1 (ENSSSCG00000013539) #22	ALKBH7 (ENSSSCG00000024254) #24	PSPN (ENSSSCG00000013540) #23	CLPP (ENSSSCG00000038079) #25	ACER1 (ENSSSCG00000023969) #26	MLLT1 (ENSSSCG00000013534) #27	ACSBG2 (ENSSSCG00000013536) #28	RFX2 (ENSSSCG00000035403) #29	RANBP3 (ENSSSCG00000013533) #30	CAPS (ENSSSCG00000013532) #31	VMAC (ENSSSCG00000031764) #32	NDUFA11 (ENSSSCG00000027307) #33	ENSSSCG00000013530	NRTN (ENSSSCG00000033413) #34	DUS3L (ENSSSCG00000040968) #35	CATSPERD (ENSSSCG00000013527) #36
Laurasiatheria_b	ANCESTRAL SPECIES	18	ENSGT00940000159125 #7	ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b #11	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00940000163125	ENSGT00950000182993.A.a #34	ENSGT00550000075134 #35
Laurasiatheria_c	ANCESTRAL SPECIES	16	ENSGT00940000159125 #7	ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b #11	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00940000163125	ENSGT00950000182993.A.a #34	ENSGT00550000075134 #35
Equus	ANCESTRAL SPECIES	34	ENSGT00940000161354	ENSGT00940000159125 #7	ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b.`c #11	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00940000163125	ENSGT00950000182993.A.a #34	ENSGT00550000075134 #35
Horse	MODERN SPECIES	28	VAV1 (ENSECAG00000014896) #7	SH2D3A (ENSECAG00000012075) #8	TRIP10 (ENSECAG00000017817) #9	GPR108 (ENSECAG00000014466) #10	C3 (ENSECAG00000057145) #11	TNFSF14 (ENSECAG00000017522) #12	ENSECAG00000058070	TNFSF9 (ENSECAG00000022714) #14	TUBB4A (ENSECAG00000037214) #15	DENND1C (ENSECAG00000010964) #16	CRB3 (ENSECAG00000010143) #17	SLC25A23 (ENSECAG00000020970) #18	SLC25A41 (ENSECAG00000018003) #19	KHSRP (ENSECAG00000018305) #20	ENSECAG00000016799 #21	GTF2F1 (ENSECAG00000000246) #22	PSPN (ENSECAG00000001763) #23	ALKBH7 (ENSECAG00000023627) #24	CLPP (ENSECAG00000023054) #25	ACER1 (ENSECAG00000022733) #26	MLLT1 (ENSECAG00000015555) #27	ENSECAG00000029780	ENSECAG00000047643	ACSBG2 (ENSECAG00000017087) #28	RFX2 (ENSECAG00000020379) #29	RANBP3 (ENSECAG00000024789) #30	ENSECAG00000052631 #31	ENSECAG00000059799 #33	ENSECAG00000033689	NRTN (ENSECAG00000039189) #34	ENSECAG00000019359
Donkey	MODERN SPECIES	12	VAV1 (ENSEASG00005011821) #7	SH2D3A (ENSEASG00005011718) #8	TRIP10 (ENSEASG00005011533) #9	GPR108 (ENSEASG00005011473) #10	ENSEASG00005000728 #11	ENSEASG00005038643 #11	TNFSF14 (ENSEASG00005025378) #12	CD70 (ENSEASG00005000353) #13	TNFSF9 (ENSEASG00005028605) #14	TUBB4A (ENSEASG00005027092) #15	DENND1C (ENSEASG00005000214) #16	CRB3 (ENSEASG00005030191) #17	SLC25A23 (ENSEASG00005000075) #18	SLC25A41 (ENSEASG00005023116) #19	ENSEASG00005028550 #21	GTF2F1 (ENSEASG00005023112) #22	PSPN (ENSEASG00005023110) #23	ALKBH7 (ENSEASG00005027385) #24	CLPP (ENSEASG00005023108) #25	ACER1 (ENSEASG00005023107) #26	MLLT1 (ENSEASG00005023105) #27	ACSBG2 (ENSEASG00005023104) #28	RFX2 (ENSEASG00005023101) #29	RANBP3 (ENSEASG00005023100) #30	ENSEASG00005036092 #31	VMAC (ENSEASG00005035944) #32	ENSEASG00005029851 #33	ENSEASG00005023096	NRTN (ENSEASG00005023095) #34	DUS3L (ENSEASG00005023094) #35	PRR22 (ENSEASG00005028262)
Chiroptera	ANCESTRAL SPECIES	31	ENSGT00940000159125 #7	ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b #11	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588.w #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00950000182993.A.a #34	ENSGT00550000075134 #35	ENSGT00390000016128	ENSGT00940000162714 #36
Microchiroptera	ANCESTRAL SPECIES	30	ENSGT00940000161354	ENSGT00940000159125 #7	ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b #11	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588.w #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00950000182993.A.a #34	ENSGT00550000075134 #35	ENSGT00390000016128	ENSGT00940000162714 #36
Greater horseshoe bat	MODERN SPECIES	9	ADGRE1 (ENSRFEG00010011348)	VAV1 (ENSRFEG00010012766) #7	SH2D3A (ENSRFEG00010012944) #8	TRIP10 (ENSRFEG00010013094) #9	GPR108 (ENSRFEG00010013722) #10	C3 (ENSRFEG00010013799) #11	TNFSF14 (ENSRFEG00010014416) #12	CD70 (ENSRFEG00010014470) #13	TNFSF9 (ENSRFEG00010014511) #14	TUBB4A (ENSRFEG00010014530) #15	DENND1C (ENSRFEG00010014718) #16	CRB3 (ENSRFEG00010014851) #17	SLC25A23 (ENSRFEG00010014934) #18	KHSRP (ENSRFEG00010015266) #20	ENSRFEG00010015355 #21	GTF2F1 (ENSRFEG00010015531) #22	PSPN (ENSRFEG00010015585) #23	ALKBH7 (ENSRFEG00010015638) #24	CLPP (ENSRFEG00010015771) #25	ACER1 (ENSRFEG00010015824) #26	MLLT1 (ENSRFEG00010015888) #27	ENSRFEG00010015957 #28	ENSRFEG00010016123 #28	RFX2 (ENSRFEG00010016196) #29	RANBP3 (ENSRFEG00010016304) #30	CAPS (ENSRFEG00010016476) #31	VMAC (ENSRFEG00010016520) #32	NDUFA11 (ENSRFEG00010016557) #33	NRTN (ENSRFEG00010016659) #34	DUS3L (ENSRFEG00010016695) #35	CATSPERD (ENSRFEG00010016860) #36
Microbat	MODERN SPECIES	1278			ENSMLUG00000007422	ENSMLUG00000025160 #11	ENSMLUG00000027221 #11	TNFSF14 (ENSMLUG00000003450) #12	CD70 (ENSMLUG00000007323) #13	ENSMLUG00000022835	TNFSF9 (ENSMLUG00000011161) #14	TUBB4A (ENSMLUG00000015607) #15	DENND1C (ENSMLUG00000015589) #16	CRB3 (ENSMLUG00000015582) #17	SLC25A41 (ENSMLUG00000015564) #19	SLC25A23 (ENSMLUG00000015572) #18	KHSRP (ENSMLUG00000015543) #20	GTF2F1 (ENSMLUG00000015530) #22	PSPN (ENSMLUG00000015527) #23	CLPP (ENSMLUG00000007981) #25	ENSMLUG00000014237 #26	MLLT1 (ENSMLUG00000014230) #27	ACSBG2 (ENSMLUG00000014216) #28	RFX2 (ENSMLUG00000017439) #29	ENSMLUG00000014888 #30	CAPS (ENSMLUG00000014884) #31	VMAC (ENSMLUG00000014883) #32	NDUFA11 (ENSMLUG00000027443) #33	NRTN (ENSMLUG00000007178) #34	DUS3L (ENSMLUG00000007159) #35	PRR22 (ENSMLUG00000023220)	CATSPERD (ENSMLUG00000001114) #36	LONP1 (ENSMLUG00000001100) #37
Megabat	MODERN SPECIES	480								TNFSF9 (ENSPVAG00000007259) #14	TUBB4A (ENSPVAG00000007258) #15	DENND1C (ENSPVAG00000007256) #16	CRB3 (ENSPVAG00000007255) #17	SLC25A23 (ENSPVAG00000007253) #18	ENSPVAG00000007252 #19	KHSRP (ENSPVAG00000007251) #20	ENSPVAG00000007250 #21	GTF2F1 (ENSPVAG00000007249) #22	PSPN (ENSPVAG00000007247) #23	ALKBH7 (ENSPVAG00000007246) #24	CLPP (ENSPVAG00000007243) #25	ACER1 (ENSPVAG00000007242) #26	MLLT1 (ENSPVAG00000007239) #27
Carnivora	ANCESTRAL SPECIES	6	ENSGT00940000159125 #7	ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b #11	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00940000163125	ENSGT00950000182993.A.a #34	ENSGT00550000075134 #35
Caniformia	ANCESTRAL SPECIES	4	ENSGT00940000159125 #7	ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b #11	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043	ENSGT00950000185519	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00940000163125	ENSGT00950000182993.A.a #34
Canidae	ANCESTRAL SPECIES		ENSGT00940000159125 #7	ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b #11	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043	ENSGT00950000185519	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00940000163125	ENSGT00950000182993.A.a #34
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00940000159125 #7	ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b #11	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043	ENSGT00950000185519	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00940000163125	ENSGT00950000182993.A.a #34
Dingo	MODERN SPECIES	112	VAV1 (ENSCAFG00020021863) #7	SH2D3A (ENSCAFG00020021858) #8	TRIP10 (ENSCAFG00020021855) #9	GPR108 (ENSCAFG00020021851) #10	C3 (ENSCAFG00020019526) #11	TNFSF14 (ENSCAFG00020019380) #12	ENSCAFG00020019376	TNFSF9 (ENSCAFG00020019371) #14	TUBB4A (ENSCAFG00020019365) #15	DENND1C (ENSCAFG00020019317) #16	CRB3 (ENSCAFG00020019301) #17	SLC25A23 (ENSCAFG00020019295) #18	SLC25A41 (ENSCAFG00020019291) #19	KHSRP (ENSCAFG00020019133) #20	ENSCAFG00020019100 #21	GTF2F1 (ENSCAFG00020019099) #22	PSPN (ENSCAFG00020019098) #23	ALKBH7 (ENSCAFG00020019096) #24	CLPP (ENSCAFG00020019094) #25	ACER1 (ENSCAFG00020019092) #26	MLLT1 (ENSCAFG00020019087) #27	ENSCAFG00020019056	ENSCAFG00020019051	ENSCAFG00020019050 #28	ENSCAFG00020019048 #28	RFX2 (ENSCAFG00020019038) #29	RANBP3 (ENSCAFG00020019018) #30	CAPS (ENSCAFG00020019013) #31	VMAC (ENSCAFG00020019007) #32	NDUFA11 (ENSCAFG00020019004) #33	ENSCAFG00020019002
Dog	MODERN SPECIES	12	VAV1 (ENSCAFG00845008896) #7	SH2D3A (ENSCAFG00845009408) #8	TRIP10 (ENSCAFG00845009583) #9	GPR108 (ENSCAFG00845009759) #10	C3 (ENSCAFG00845010104) #11	TNFSF14 (ENSCAFG00845010429) #12	CD70 (ENSCAFG00845010526) #13	ENSCAFG00845010584 #14	TUBB4A (ENSCAFG00845010611) #15	DENND1C (ENSCAFG00845010702) #16	CRB3 (ENSCAFG00845010829) #17	SLC25A23 (ENSCAFG00845010879) #18	SLC25A41 (ENSCAFG00845010943) #19	KHSRP (ENSCAFG00845011000) #20	ENSCAFG00845011160 #21	GTF2F1 (ENSCAFG00845011192) #22	PSPN (ENSCAFG00845011239) #23	ALKBH7 (ENSCAFG00845011262) #24	CLPP (ENSCAFG00845011300) #25	ACER1 (ENSCAFG00845011353) #26	MLLT1 (ENSCAFG00845011430) #27	ENSCAFG00845011637	ACSBG2 (ENSCAFG00845011716) #28	RFX2 (ENSCAFG00845011818) #29	RANBP3 (ENSCAFG00845012047) #30	CAPS (ENSCAFG00845012225) #31	NDUFA11 (ENSCAFG00845012269) #33	FUT5 (ENSCAFG00845012290)	NRTN (ENSCAFG00845012314) #34	ENSCAFG00845012403 #34	DUS3L (ENSCAFG00845012465) #35
Red fox	MODERN SPECIES	278	SH2D3A (ENSVVUG00000020490) #8	TRIP10 (ENSVVUG00000020538) #9	GPR108 (ENSVVUG00000022222) #10	C3 (ENSVVUG00000022719) #11	TNFSF14 (ENSVVUG00000026672) #12	CD70 (ENSVVUG00000026679) #13	ENSVVUG00000026681	ENSVVUG00000026683 #14	ENSVVUG00000026690 #15	DENND1C (ENSVVUG00000026697) #16	CRB3 (ENSVVUG00000026716) #17	SLC25A23 (ENSVVUG00000026718) #18	SLC25A41 (ENSVVUG00000026725) #19	KHSRP (ENSVVUG00000026737) #20	ENSVVUG00000026889 #21	GTF2F1 (ENSVVUG00000026891) #22	PSPN (ENSVVUG00000026892) #23	ALKBH7 (ENSVVUG00000026894) #24	CLPP (ENSVVUG00000026895) #25	ACER1 (ENSVVUG00000026897) #26	MLLT1 (ENSVVUG00000026899) #27	ENSVVUG00000026901	ACSBG2 (ENSVVUG00000026905) #28	RFX2 (ENSVVUG00000026908) #29	RANBP3 (ENSVVUG00000026909) #30	VMAC (ENSVVUG00000026915) #32	NDUFA11 (ENSVVUG00000026918) #33
Caniformia_b	ANCESTRAL SPECIES	23	ENSGT00940000159125 #7	ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b #11	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043	ENSGT00950000185519	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00940000163125	ENSGT00950000182993.A.a #34
Mustelinae	ANCESTRAL SPECIES	19	ENSGT00940000159125 #7	ENSGT00940000154130.a.a.a.d #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b #11	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00950000182993.A.a #34	ENSGT00550000075134 #35	ENSGT00390000016128
American mink	MODERN SPECIES	175	VAV1 (ENSNVIG00000016115) #7	SH2D3A (ENSNVIG00000016062) #8	TRIP10 (ENSNVIG00000015973) #9	GPR108 (ENSNVIG00000015936) #10	C3 (ENSNVIG00000015877) #11	TNFSF14 (ENSNVIG00000015869) #12	CD70 (ENSNVIG00000015860) #13	TNFSF9 (ENSNVIG00000015851) #14	TUBB4A (ENSNVIG00000015845) #15	DENND1C (ENSNVIG00000015781) #16	CRB3 (ENSNVIG00000015751) #17	SLC25A23 (ENSNVIG00000015735) #18	SLC25A41 (ENSNVIG00000015722) #19	KHSRP (ENSNVIG00000015567) #20	ENSNVIG00000015514 #21	GTF2F1 (ENSNVIG00000015498) #22	PSPN (ENSNVIG00000015490) #23	ENSNVIG00000015472 #25	ALKBH7 (ENSNVIG00000015449) #24	ENSNVIG00000015434 #25	ACER1 (ENSNVIG00000015426) #26	MLLT1 (ENSNVIG00000015422) #27	ENSNVIG00000015289	ACSBG2 (ENSNVIG00000015209) #28	RFX2 (ENSNVIG00000015069) #29	RANBP3 (ENSNVIG00000014853) #30	CAPS (ENSNVIG00000014785) #31	VMAC (ENSNVIG00000014779) #32	NDUFA11 (ENSNVIG00000014768) #33	NRTN (ENSNVIG00000014759) #34	DUS3L (ENSNVIG00000014698) #35
Ferret	MODERN SPECIES	326	SH2D3A (ENSMPUG00000007030) #8	GPR108 (ENSMPUG00000007018) #10	TRIP10 (ENSMPUG00000007008) #9	ENSMPUG00000019706	C3 (ENSMPUG00000006984) #11	TNFSF14 (ENSMPUG00000006977) #12	CD70 (ENSMPUG00000006973) #13	TNFSF9 (ENSMPUG00000006964) #14	TUBB4A (ENSMPUG00000006958) #15	DENND1C (ENSMPUG00000006946) #16	CRB3 (ENSMPUG00000006930) #17	SLC25A23 (ENSMPUG00000006918) #18	SLC25A41 (ENSMPUG00000006890) #19	KHSRP (ENSMPUG00000006615) #20	ENSMPUG00000006584 #21	GTF2F1 (ENSMPUG00000006566) #22	CLPP (ENSMPUG00000006553) #25	ACER1 (ENSMPUG00000006546) #26	MLLT1 (ENSMPUG00000006527) #27	ENSMPUG00000006513	ACSBG2 (ENSMPUG00000006350) #28	RFX2 (ENSMPUG00000006329) #29	RANBP3 (ENSMPUG00000006306) #30	ENSMPUG00000019705	CAPS (ENSMPUG00000006269) #31	VMAC (ENSMPUG00000006261) #32	NDUFA11 (ENSMPUG00000006200) #33	DUS3L (ENSMPUG00000006188) #35	CATSPERD (ENSMPUG00000006175) #36	ENSMPUG00000006166	LONP1 (ENSMPUG00000006156) #37
Ursidae	ANCESTRAL SPECIES	20	ENSGT00940000159125 #7	ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b #11	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043	ENSGT00950000185519	ENSGT00940000155332.A.v #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00940000163125	ENSGT00950000182993.A.a #34
Giant Panda	MODERN SPECIES	14	VAV1 (ENSAMEG00000007416) #7	SH2D3A (ENSAMEG00000007379) #8	TRIP10 (ENSAMEG00000007327) #9	GPR108 (ENSAMEG00000007302) #10	C3 (ENSAMEG00000007161) #11	TNFSF14 (ENSAMEG00000028779) #12	CD70 (ENSAMEG00000007138) #13	TNFSF9 (ENSAMEG00000024527) #14	TUBB4A (ENSAMEG00000029200) #15	DENND1C (ENSAMEG00000007101) #16	CRB3 (ENSAMEG00000007097) #17	SLC25A23 (ENSAMEG00000007035) #18	SLC25A41 (ENSAMEG00000007032) #19	KHSRP (ENSAMEG00000006978) #20	ENSAMEG00000006968 #21	GTF2F1 (ENSAMEG00000006933) #22	PSPN (ENSAMEG00000006930) #23	ALKBH7 (ENSAMEG00000006925) #24	CLPP (ENSAMEG00000029863) #25	ACER1 (ENSAMEG00000023660) #26	MLLT1 (ENSAMEG00000006860) #27	ENSAMEG00000006856	ACSBG2 (ENSAMEG00000006804) #28	RFX2 (ENSAMEG00000007745) #29	CAPS (ENSAMEG00000007894) #31	VMAC (ENSAMEG00000007913) #32	RANBP3 (ENSAMEG00000007819) #30	ENSAMEG00000018817	NRTN (ENSAMEG00000028449) #34	DUS3L (ENSAMEG00000012423) #35	PRR22 (ENSAMEG00000030882)
Ursus	ANCESTRAL SPECIES	16	ENSGT00940000159125 #7	ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b #11	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043	ENSGT00950000185519	ENSGT00940000155332.A.v #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00940000163125	ENSGT00550000075134 #35
American black bear	MODERN SPECIES	5651																GTF2F1 (ENSUAMG00000026433) #22	PSPN (ENSUAMG00000026458) #23	ALKBH7 (ENSUAMG00000026459) #24	CLPP (ENSUAMG00000026460) #25	ACER1 (ENSUAMG00000026461) #26
Polar bear	MODERN SPECIES	455	ADGRE1 (ENSUMAG00000012737)	VAV1 (ENSUMAG00000012729) #7	SH2D3A (ENSUMAG00000012716) #8	TRIP10 (ENSUMAG00000012655) #9	GPR108 (ENSUMAG00000012627) #10	C3 (ENSUMAG00000011442) #11	TNFSF14 (ENSUMAG00000011256) #12	CD70 (ENSUMAG00000011245) #13	ENSUMAG00000011240 #14	TUBB4A (ENSUMAG00000011205) #15	DENND1C (ENSUMAG00000011179) #16	SLC25A23 (ENSUMAG00000011176) #18	SLC25A41 (ENSUMAG00000011173) #19	KHSRP (ENSUMAG00000011144) #20	ENSUMAG00000011130 #21	ENSUMAG00000011125 #22	ALKBH7 (ENSUMAG00000011121) #24	CLPP (ENSUMAG00000011118) #25	ACER1 (ENSUMAG00000011114) #26	MLLT1 (ENSUMAG00000011106) #27	ENSUMAG00000011083	ENSUMAG00000011074	ACSBG2 (ENSUMAG00000011013) #28	RFX2 (ENSUMAG00000010908) #29	RANBP3 (ENSUMAG00000010878) #30	CAPS (ENSUMAG00000010864) #31	NDUFA11 (ENSUMAG00000010857) #33	ENSUMAG00000010843	DUS3L (ENSUMAG00000010831) #35	ENSUMAG00000010828	CATSPERD (ENSUMAG00000010820) #36
Felidae	ANCESTRAL SPECIES	21	ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b.cc #11	ENSGT00940000154063.C.a.b.bc.a #11	ENSGT00940000154063.C.a.b.bc.b #11	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a.b #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00940000163125	ENSGT00950000182993.A.a #34	ENSGT00550000075134 #35
Cat	MODERN SPECIES	1	ADGRE1 (ENSFCAG00000005054)	VAV1 (ENSFCAG00000005052) #7	SH2D3A (ENSFCAG00000026188) #8	TRIP10 (ENSFCAG00000005047) #9	ENSFCAG00000048073 #11	GPR108 (ENSFCAG00000018222) #10	ENSFCAG00000046278 #11	TNFSF14 (ENSFCAG00000005040) #12	CD70 (ENSFCAG00000028989) #13	TNFSF9 (ENSFCAG00000038600) #14	TUBB4A (ENSFCAG00000010269) #15	DENND1C (ENSFCAG00000012514) #16	CRB3 (ENSFCAG00000041058) #17	SLC25A41 (ENSFCAG00000025463) #19	KHSRP (ENSFCAG00000003731) #20	GTF2F1 (ENSFCAG00000012512) #22	PSPN (ENSFCAG00000043004) #23	ALKBH7 (ENSFCAG00000012510) #24	CLPP (ENSFCAG00000012509) #25	ACER1 (ENSFCAG00000040566) #26	MLLT1 (ENSFCAG00000023537) #27	ENSFCAG00000027464	ACSBG2 (ENSFCAG00000012505) #28	RFX2 (ENSFCAG00000012504) #29	RANBP3 (ENSFCAG00000012502) #30	ENSFCAG00000045490 #31	NDUFA11 (ENSFCAG00000016347) #33	ENSFCAG00000025259	NRTN (ENSFCAG00000045492) #34	DUS3L (ENSFCAG00000027534) #35	CATSPERD (ENSFCAG00000015603) #36
Panthera	ANCESTRAL SPECIES	15	ENSGT00940000159125 #7	ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b.cc #11	ENSGT00940000154063.C.a.b.bc.a #11	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a.b #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00950000182993.A.a #34	ENSGT00550000075134 #35	ENSGT00390000016128
Panthera_a	ANCESTRAL SPECIES		ENSGT00940000154130.a.a.a #8	ENSGT00950000183047.c.a #9	ENSGT00940000160446 #10	ENSGT00940000154063.C.a.b.cc #11	ENSGT00940000154063.C.a.b.bc.a #11	ENSGT00940000154063.C.a.b.bc.b #11	ENSGT01060000248544.a.a.b.a.a #12	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a.b #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043	ENSGT00940000155332.A #28	ENSGT01050000244879.a.a.a #29	ENSGT00940000158588 #30	ENSGT00940000162442 #31	ENSGT00390000007212 #32	ENSGT00390000012434 #33	ENSGT00950000182993.A.a #34	ENSGT00550000075134 #35	ENSGT00390000016128
leopard	MODERN SPECIES	134					TNFSF14 (ENSPPRG00000013892) #12	CD70 (ENSPPRG00000013825) #13	TNFSF9 (ENSPPRG00000012095) #14	ENSPPRG00000011682	ENSPPRG00000011364 #15	DENND1C (ENSPPRG00000011124) #16	CRB3 (ENSPPRG00000009994) #17	ENSPPRG00000008866 #17	SLC25A23 (ENSPPRG00000008786) #18	SLC25A41 (ENSPPRG00000008078) #19	KHSRP (ENSPPRG00000008001) #20	GTF2F1 (ENSPPRG00000007816) #22	PSPN (ENSPPRG00000007687) #23	ALKBH7 (ENSPPRG00000007447) #24	ENSPPRG00000007143	ACER1 (ENSPPRG00000007111) #26	MLLT1 (ENSPPRG00000006767) #27	ENSPPRG00000006490	ACSBG2 (ENSPPRG00000006197) #28	RFX2 (ENSPPRG00000004939) #29	RANBP3 (ENSPPRG00000004053) #30	CAPS (ENSPPRG00000002279) #31	VMAC (ENSPPRG00000001830) #32	NDUFA11 (ENSPPRG00000001722) #33	NRTN (ENSPPRG00000000950) #34	DUS3L (ENSPPRG00000000633) #35	PRR22 (ENSPPRG00000000087)
lion	MODERN SPECIES	2	ENSPLOG00000000477	ENSPLOG00000000398	ADGRE1 (ENSPLOG00000000168)	VAV1 (ENSPLOG00000000054) #7	SH2D3A (ENSPLOG00000000042) #8	TRIP10 (ENSPLOG00000000029) #9	GPR108 (ENSPLOG00000008896) #10	TNFSF14 (ENSPLOG00000008844) #12	CD70 (ENSPLOG00000008810) #13	TUBB4A (ENSPLOG00000008766) #15	DENND1C (ENSPLOG00000008616) #16	CRB3 (ENSPLOG00000008561) #17	SLC25A23 (ENSPLOG00000008518) #18	SLC25A41 (ENSPLOG00000008462) #19	KHSRP (ENSPLOG00000008352) #20	GTF2F1 (ENSPLOG00000008314) #22	PSPN (ENSPLOG00000008290) #23	ALKBH7 (ENSPLOG00000008230) #24	CLPP (ENSPLOG00000008162) #25	ACER1 (ENSPLOG00000008130) #26	MLLT1 (ENSPLOG00000008040) #27	ENSPLOG00000007717	ACSBG2 (ENSPLOG00000007544) #28	RFX2 (ENSPLOG00000007424) #29	RANBP3 (ENSPLOG00000007325) #30	CAPS (ENSPLOG00000007257) #31	VMAC (ENSPLOG00000007244) #32	NDUFA11 (ENSPLOG00000007217) #33	NRTN (ENSPLOG00000007186) #34	DUS3L (ENSPLOG00000007145) #35	PRR22 (ENSPLOG00000007098)
Tiger	MODERN SPECIES	54					VAV1 (ENSPTIG00000019176) #7	SH2D3A (ENSPTIG00000007967) #8	TRIP10 (ENSPTIG00000009104) #9	GPR108 (ENSPTIG00000012912) #10	ENSPTIG00000015516 #11	ENSPTIG00000010121 #11	TNFSF14 (ENSPTIG00000013537) #12	ENSPTIG00000014863	DENND1C (ENSPTIG00000015765) #16	SLC25A23 (ENSPTIG00000020081) #18	SLC25A41 (ENSPTIG00000020410) #19	GTF2F1 (ENSPTIG00000004277) #22	ENSPTIG00000006413 #24	ENSPTIG00000007112	ACER1 (ENSPTIG00000007573) #26	MLLT1 (ENSPTIG00000008740) #27	ACSBG2 (ENSPTIG00000010163) #28	RFX2 (ENSPTIG00000013487) #29	RANBP3 (ENSPTIG00000016728) #30	CAPS (ENSPTIG00000021210) #31	ENSPTIG00000021327 #32	ENSPTIG00000021644 #33	ENSPTIG00000021748	CATSPERD (ENSPTIG00000002842) #36	LONP1 (ENSPTIG00000007357) #37	ENSPTIG00000012120	ENSPTIG00000012707
Eulipotyphla	ANCESTRAL SPECIES	1997															ENSGT00940000159428 #18	ENSGT00440000038032 #22
Common shrew	MODERN SPECIES	1816															SLC25A23 (ENSSARG00000010884) #18	ENSSARG00000010875 #22
Hedgehog	MODERN SPECIES	2481																ENSEEUG00000014496 #22