Glires	ANCESTRAL SPECIES	25	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a #7	ENSGT00940000160446 #8	ENSGT00940000154063.C.a.b #9	ENSGT01060000248544.a.a.b.a.a #10	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000156051 #20	ENSGT00940000162419 #19	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043 #28	ENSGT00940000155332.A #29	ENSGT01050000244879.a.a.a #30	ENSGT00940000158588	ENSGT00940000162442 #37	ENSGT00390000007212	ENSGT00390000012434 #35	ENSGT00940000163125 #34	ENSGT00950000182993.A.a #33	ENSGT00550000075134 #32
Rodentia	ANCESTRAL SPECIES	17	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a #7	ENSGT00940000160446 #8	ENSGT00940000154063.C.a.b #9	ENSGT01060000248544.a.a.b.a.a #10	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043 #28	ENSGT00940000155332.A #29	ENSGT01050000244879.a.a.a #30	ENSGT00940000158588	ENSGT00940000162442 #37	ENSGT00390000007212	ENSGT00390000012434 #35	ENSGT00940000163125 #34	ENSGT00950000182993.A.a #33	ENSGT00550000075134 #32
Rodentia_B	ANCESTRAL SPECIES	28	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a #7	ENSGT00940000160446 #8	ENSGT00940000154063.C.a.b #9	ENSGT01060000248544.a.a.b.a.a #10	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043 #28	ENSGT00940000155332.A #29	ENSGT01050000244879.a.a.a #30	ENSGT00940000158588	ENSGT00940000162442 #37	ENSGT00390000007212	ENSGT00390000012434 #35	ENSGT00940000163125 #34	ENSGT00950000182993.A.a #33	ENSGT00550000075134 #32
Myomorpha	ANCESTRAL SPECIES	27	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a #7	ENSGT00940000160446 #8	ENSGT00940000154063.C.a.b #9	ENSGT01060000248544.a.a.b.a.a #10	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043 #28	ENSGT00940000155332.A #29	ENSGT01050000244879.a.a.a #30	ENSGT00390000016128 #31	ENSGT00550000075134 #32	ENSGT00950000182993.A.a #33	ENSGT00940000163125 #34	ENSGT00390000012434 #35	ENSGT00390000007212	ENSGT00940000162442 #37
Muroidea	ANCESTRAL SPECIES	32	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a #7	ENSGT00940000160446 #8	ENSGT00940000154063.C.a.b #9	ENSGT01060000248544.a.a.b.a.a #10	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043 #28	ENSGT00940000155332.A #29	ENSGT01050000244879.a.a.a #30	ENSGT00390000016128 #31	ENSGT00550000075134 #32	ENSGT00950000182993.A.a #33	ENSGT00940000163125 #34	ENSGT00390000012434 #35	ENSGT00390000007212	ENSGT00940000162442 #37
Muroidea_A	ANCESTRAL SPECIES	25	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a #7	ENSGT00940000160446 #8	ENSGT00940000154063.C.a.b #9	ENSGT01060000248544.a.a.b.a.a #10	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043 #28	ENSGT00940000155332.A #29	ENSGT01050000244879.a.a.a #30	ENSGT00390000016128 #31	ENSGT00550000075134 #32	ENSGT00950000182993.A.a #33	ENSGT00940000163125 #34	ENSGT00390000012434 #35	ENSGT00390000007212	ENSGT00940000162442 #37
Cricetidae	ANCESTRAL SPECIES	25	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a #7	ENSGT00940000160446 #8	ENSGT00940000154063.C.a.b #9	ENSGT01060000248544.a.a.b.a.a #10	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043 #28	ENSGT00940000155332.A #29	ENSGT01050000244879.a.a.a #30	ENSGT00390000016128 #31	ENSGT00550000075134 #32	ENSGT00950000182993.A.a #33	ENSGT00940000163125 #34	ENSGT00390000012434 #35	ENSGT00390000007212	ENSGT00940000162442 #37
Cricetidae_B	ANCESTRAL SPECIES	27	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a #7	ENSGT00940000160446 #8	ENSGT00940000154063.C.a.b #9	ENSGT01060000248544.a.a.b.a.a #10	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043 #28	ENSGT00940000155332.A #29	ENSGT01050000244879.a.a.a #30	ENSGT00390000016128 #31	ENSGT00550000075134 #32	ENSGT00950000182993.A.a #33	ENSGT00940000163125 #34	ENSGT00390000012434 #35	ENSGT00390000007212	ENSGT00940000162442 #37
Northern American deer mouse	MODERN SPECIES	14	Trip10 (ENSPEMG00000017394) #7	Gpr108 (ENSPEMG00000030315) #8	ENSPEMG00000001526 #9	Tnfsf14 (ENSPEMG00000000292) #10	ENSPEMG00000015087 #11	ENSPEMG00000011159 #12	Cd70 (ENSPEMG00000015587) #13	Tnfsf9 (ENSPEMG00000020989) #14	Tubb4a (ENSPEMG00000028633) #15	Dennd1c (ENSPEMG00000023860) #16	Crb3 (ENSPEMG00000021919) #17	Slc25a23 (ENSPEMG00000021021) #18	Slc25a41 (ENSPEMG00000020675) #19	Khsrp (ENSPEMG00000022853) #20	Gm17949 (ENSPEMG00000026776) #21	Gtf2f1 (ENSPEMG00000011236) #22	Pspn (ENSPEMG00000008246) #23	Alkbh7 (ENSPEMG00000016536) #24	Clpp (ENSPEMG00000009546) #25	Acer1 (ENSPEMG00000021242) #26	Mllt1 (ENSPEMG00000020708) #27	Acsbg3 (ENSPEMG00000022840) #28	Acsbg2 (ENSPEMG00000014725) #29	Rfx2 (ENSPEMG00000021291) #30	Prr22 (ENSPEMG00000014824) #31	Dus3l (ENSPEMG00000020784) #32	Nrtn (ENSPEMG00000014960) #33	ENSPEMG00000031186 #34	Ndufa11 (ENSPEMG00000020648) #35	ENSPEMG00000026816 #36	ENSPEMG00000020906 #37
Prairie vole	MODERN SPECIES	181		Vav1 (ENSMOCG00000021139)	Trip10 (ENSMOCG00000013943) #7	ENSMOCG00000018962 #8	C3 (ENSMOCG00000008114) #9	Tnfsf14 (ENSMOCG00000016341) #10	Cd70 (ENSMOCG00000021343) #13	Tnfsf9 (ENSMOCG00000018705) #14	Tubb4a (ENSMOCG00000015551) #15	ENSMOCG00000001187 #16	Crb3 (ENSMOCG00000000421) #17	Slc25a23 (ENSMOCG00000014701) #18	Slc25a41 (ENSMOCG00000013299) #19	Khsrp (ENSMOCG00000018305) #20	Gm17949 (ENSMOCG00000016801) #21	Gtf2f1 (ENSMOCG00000000296) #22	Pspn (ENSMOCG00000014015) #23	Alkbh7 (ENSMOCG00000004923) #24	Clpp (ENSMOCG00000015784) #25	Acer1 (ENSMOCG00000002295) #26	Mllt1 (ENSMOCG00000020318) #27	Acsbg3 (ENSMOCG00000008516) #28	Acsbg2 (ENSMOCG00000000050) #29	Rfx2 (ENSMOCG00000012338) #30	Prr22 (ENSMOCG00000007432) #31	Dus3l (ENSMOCG00000021796) #32	Nrtn (ENSMOCG00000015675) #33	ENSMOCG00000006283 #34	ENSMOCG00000001594 #35	Vmac (ENSMOCG00000001137)	Ranbp3 (ENSMOCG00000000298)
Cricetinae	ANCESTRAL SPECIES	4	ENSGT00940000161354	ENSGT00940000159125	ENSGT00950000183047.c.a #7	ENSGT00940000160446 #8	ENSGT00940000154063.C.a.b #9	ENSGT01060000248544.a.a.b.a.a #10	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043 #28	ENSGT00940000155332.A #29	ENSGT01050000244879.a.a.a #30	ENSGT00390000016128 #31	ENSGT00550000075134 #32	ENSGT00950000182993.A.a #33	ENSGT00940000163125 #34	ENSGT00390000012434 #35	ENSGT00390000007212	ENSGT00940000162442 #37
Chinese hamster chok1gshd	MODERN SPECIES	2	Adgre1 (ENSCGRG00001013011)	Vav1 (ENSCGRG00001017169)	Trip10 (ENSCGRG00001018563) #7	Gpr108 (ENSCGRG00001020593) #8	C3 (ENSCGRG00001005133) #9	Tnfsf14 (ENSCGRG00001017618) #10	Cd70 (ENSCGRG00001022682) #13	ENSCGRG00001022936 #14	Tubb4a (ENSCGRG00001001011) #15	Dennd1c (ENSCGRG00001020022) #16	Crb3 (ENSCGRG00001021736) #17	Slc25a23 (ENSCGRG00001023449) #18	Slc25a41 (ENSCGRG00001000917) #19	Khsrp (ENSCGRG00001011031) #20	Gm17949 (ENSCGRG00001006952) #21	Gtf2f1 (ENSCGRG00001006209) #22	Pspn (ENSCGRG00001017826) #23	Alkbh7 (ENSCGRG00001019380) #24	Clpp (ENSCGRG00001019808) #25	Acer1 (ENSCGRG00001016857) #26	Mllt1 (ENSCGRG00001018607) #27	Acsbg3 (ENSCGRG00001021403) #28	Acsbg2 (ENSCGRG00001001208) #29	Rfx2 (ENSCGRG00001008783) #30	Prr22 (ENSCGRG00001022202) #31	Dus3l (ENSCGRG00001023361) #32	Nrtn (ENSCGRG00001024492) #33	ENSCGRG00001008918 #34	Ndufa11 (ENSCGRG00001023471) #35	Vmac (ENSCGRG00001023793)	ENSCGRG00001021756 #37
Golden Hamster	DUPLICATION
Golden Hamster	MODERN SPECIES	481																Gtf2f1 (ENSMAUG00000009070) #22
Golden Hamster	MODERN SPECIES	730	Vav1 (ENSMAUG00000021145)	Trip10 (ENSMAUG00000005828) #7	ENSMAUG00000020000 #8	C3 (ENSMAUG00000013599) #9	Tnfsf14 (ENSMAUG00000020967) #10	ENSMAUG00000015229	Cd70 (ENSMAUG00000019101) #13	ENSMAUG00000021205 #14	Tubb4a (ENSMAUG00000017901) #15	Dennd1c (ENSMAUG00000006409) #16	Crb3 (ENSMAUG00000019988) #17	ENSMAUG00000000871 #18	Slc25a41 (ENSMAUG00000014724) #19	Khsrp (ENSMAUG00000018966) #20	Gm17949 (ENSMAUG00000018260) #21	ENSMAUG00000015346 #22	Pspn (ENSMAUG00000019121) #23	Alkbh7 (ENSMAUG00000000800) #24	Clpp (ENSMAUG00000021469) #25	Acer1 (ENSMAUG00000012781) #26	Mllt1 (ENSMAUG00000011374) #27	Acsbg3 (ENSMAUG00000014035) #28	Acsbg2 (ENSMAUG00000017399) #29	Rfx2 (ENSMAUG00000018587) #30	Prr22 (ENSMAUG00000003201) #31	Dus3l (ENSMAUG00000008347) #32	Nrtn (ENSMAUG00000001043) #33	Ndufa11 (ENSMAUG00000021572) #35	Vmac (ENSMAUG00000009455)	ENSMAUG00000013827 #37	Ranbp3 (ENSMAUG00000011228)
Murinae	ANCESTRAL SPECIES	38	ENSGT00940000161354	ENSGT00940000159125	ENSGT00950000183047.c.a #7	ENSGT00940000160446 #8	ENSGT00940000154063.C.a.b #9	ENSGT01060000248544.a.a.b.a.a #10	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043 #28	ENSGT00940000155332.A #29	ENSGT01050000244879.a.a.a #30	ENSGT00390000016128 #31	ENSGT00550000075134 #32	ENSGT00950000182993.A.a #33	ENSGT00390000012434 #35	ENSGT00390000007212	ENSGT00940000162442 #37	ENSGT00940000158588
Mus	ANCESTRAL SPECIES	16	ENSGT00940000159125	ENSGT00950000183047.c.a #7	ENSGT00940000160446 #8	ENSGT00940000154063.C.a.b #9	ENSGT01060000248544.a.a.b.a.a #10	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT01100000266942	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043 #28	ENSGT00940000155332.A #29	ENSGT01050000244879.a.a.a #30	ENSGT00390000016128 #31	ENSGT00550000075134 #32	ENSGT00950000182993.A.a #33	ENSGT00390000012434 #35	ENSGT00390000007212	ENSGT00940000158588	ENSGT00940000162714
Mus_A	ANCESTRAL SPECIES	10	ENSGT00940000159125	ENSGT00950000183047.c.a #7	ENSGT00940000160446 #8	ENSGT00940000154063.C.a.b #9	ENSGT01060000248544.a.a.b.a.a #10	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT01100000266942	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043 #28	ENSGT00940000155332.A #29	ENSGT01050000244879.a.a.a #30	ENSGT00390000016128 #31	ENSGT00550000075134 #32	ENSGT00950000182993.A.a #33	ENSGT00390000012434.k #35	ENSGT00390000007212	ENSGT00940000158588	ENSGT00940000162714
Mus_B	ANCESTRAL SPECIES	9	ENSGT00940000159125	ENSGT00950000183047.c.a #7	ENSGT00940000160446 #8	ENSGT00940000154063.C.a.b #9	ENSGT01060000248544.a.a.b.a.a #10	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT01100000266942	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043 #28	ENSGT00940000155332.A #29	ENSGT01050000244879.a.a.a #30	ENSGT00390000016128 #31	ENSGT00550000075134 #32	ENSGT00950000182993.A.a #33	ENSGT00390000012434.k #35	ENSGT00390000007212	ENSGT00940000158588	ENSGT00940000162714
Mus_C	ANCESTRAL SPECIES	9	ENSGT00940000159125	ENSGT00950000183047.c.a #7	ENSGT00940000160446 #8	ENSGT00940000154063.C.a.b #9	ENSGT01060000248544.a.a.b.a.a #10	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT01100000266942	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043 #28	ENSGT00940000155332.A #29	ENSGT01050000244879.a.a.a #30	ENSGT00390000016128 #31	ENSGT00550000075134 #32	ENSGT00950000182993.A.a #33	ENSGT00390000012434.k #35	ENSGT00390000007212	ENSGT00940000158588	ENSGT00940000162714
spretus	MODERN SPECIES	8	Adgre1 (MGP_SPRETEiJ_G0022725)	Vav1 (MGP_SPRETEiJ_G0022724)	Trip10 (MGP_SPRETEiJ_G0022723) #7	Gpr108 (MGP_SPRETEiJ_G0022722) #8	C3 (MGP_SPRETEiJ_G0022721) #9	Tnfsf14 (MGP_SPRETEiJ_G0022720) #10	Cd70 (MGP_SPRETEiJ_G0022719) #13	Tnfsf9 (MGP_SPRETEiJ_G0022718) #14	MGP_SPRETEiJ_G0022717	Tubb4a (MGP_SPRETEiJ_G0022716) #15	MGP_SPRETEiJ_G0022715 #16	Crb3 (MGP_SPRETEiJ_G0022714) #17	Slc25a23 (MGP_SPRETEiJ_G0022713) #18	Slc25a41 (MGP_SPRETEiJ_G0022712) #19	Khsrp (MGP_SPRETEiJ_G0022711) #20	Gtf2f1 (MGP_SPRETEiJ_G0022710) #22	Pspn (MGP_SPRETEiJ_G0022709) #23	Alkbh7 (MGP_SPRETEiJ_G0022708) #24	Clpp (MGP_SPRETEiJ_G0022707) #25	Acer1 (MGP_SPRETEiJ_G0022706) #26	Mllt1 (MGP_SPRETEiJ_G0022705) #27	Acsbg3 (MGP_SPRETEiJ_G0022704) #28	Acsbg2 (MGP_SPRETEiJ_G0022703) #29	Rfx2 (MGP_SPRETEiJ_G0022702) #30	Prr22 (MGP_SPRETEiJ_G0022701) #31	Dus3l (MGP_SPRETEiJ_G0022700) #32	Nrtn (MGP_SPRETEiJ_G0022699) #33	Ndufa11 (MGP_SPRETEiJ_G0022698) #35	Vmac (MGP_SPRETEiJ_G0022697)	Ranbp3 (MGP_SPRETEiJ_G0022696)	Catsperd (MGP_SPRETEiJ_G0022695)
Steppe mouse	MODERN SPECIES	2657		Vav1 (ENSMSIG00000021244)	Trip10 (ENSMSIG00000021462) #7	Gpr108 (ENSMSIG00000021547) #8	C3 (ENSMSIG00000021615) #9	Tnfsf14 (ENSMSIG00000021706) #10	Cd70 (ENSMSIG00000021712) #13	Tnfsf9 (ENSMSIG00000021718) #14	Tubb4a (ENSMSIG00000021731) #15	Dennd1c (ENSMSIG00000021743) #16	Crb3 (ENSMSIG00000021794) #17	Slc25a23 (ENSMSIG00000021822) #18	Slc25a41 (ENSMSIG00000021849) #19	Khsrp (ENSMSIG00000021874) #20	Gm17949 (ENSMSIG00000021931) #21	Gtf2f1 (ENSMSIG00000021940) #22	Pspn (ENSMSIG00000021975) #23	Alkbh7 (ENSMSIG00000021986) #24	Clpp (ENSMSIG00000022008) #25	Acer1 (ENSMSIG00000022023) #26	Mllt1 (ENSMSIG00000022050) #27	Acsbg3 (ENSMSIG00000022123) #28	Acsbg2 (ENSMSIG00000022144) #29	Rfx2 (ENSMSIG00000022188) #30	Prr22 (ENSMSIG00000022272) #31	Dus3l (ENSMSIG00000022291) #32	Nrtn (ENSMSIG00000022315) #33	ENSMSIG00000022323 #35	Vmac (ENSMSIG00000022334)	Ranbp3 (ENSMSIG00000022350)	Catsperd (ENSMSIG00000022478)
Mouse	MODERN SPECIES	8	Adgre1 (ENSMUSG00000004730)	Vav1 (ENSMUSG00000034116)	Trip10 (ENSMUSG00000019487) #7	Gpr108 (ENSMUSG00000005823) #8	C3 (ENSMUSG00000024164) #9	Tnfsf14 (ENSMUSG00000005824) #10	Cd70 (ENSMUSG00000019489) #13	Tnfsf9 (ENSMUSG00000035678) #14	Tubb4a (ENSMUSG00000062591) #15	Dennd1c (ENSMUSG00000002668) #16	Crb3 (ENSMUSG00000044279) #17	Slc25a23 (ENSMUSG00000046329) #18	Slc25a41 (ENSMUSG00000011486) #19	Khsrp (ENSMUSG00000007670) #20	Gm17949 (ENSMUSG00000109739) #21	Gtf2f1 (ENSMUSG00000002658) #22	Pspn (ENSMUSG00000002664) #23	Alkbh7 (ENSMUSG00000002661) #24	Clpp (ENSMUSG00000002660) #25	Acer1 (ENSMUSG00000045019) #26	Mllt1 (ENSMUSG00000024212) #27	Acsbg3 (ENSMUSG00000024209) #28	Acsbg2 (ENSMUSG00000024207) #29	Rfx2 (ENSMUSG00000024206) #30	Prr22 (ENSMUSG00000090273) #31	Dus3l (ENSMUSG00000007603) #32	Nrtn (ENSMUSG00000039481) #33	Ndufa11 (ENSMUSG00000002379) #35	Vmac (ENSMUSG00000054723)	Ranbp3 (ENSMUSG00000002372)	Catsperd (ENSMUSG00000040828)
Ryukyu mouse	MODERN SPECIES	8	Adgre1 (MGP_CAROLIEiJ_G0021814)	Vav1 (MGP_CAROLIEiJ_G0021813)	Trip10 (MGP_CAROLIEiJ_G0021812) #7	Gpr108 (MGP_CAROLIEiJ_G0021811) #8	C3 (MGP_CAROLIEiJ_G0021810) #9	Tnfsf14 (MGP_CAROLIEiJ_G0021809) #10	Cd70 (MGP_CAROLIEiJ_G0021808) #13	Tnfsf9 (MGP_CAROLIEiJ_G0021807) #14	MGP_CAROLIEiJ_G0021806	Tubb4a (MGP_CAROLIEiJ_G0021805) #15	Dennd1c (MGP_CAROLIEiJ_G0021804) #16	Crb3 (MGP_CAROLIEiJ_G0021803) #17	Slc25a23 (MGP_CAROLIEiJ_G0021802) #18	Slc25a41 (MGP_CAROLIEiJ_G0021801) #19	Khsrp (MGP_CAROLIEiJ_G0021800) #20	Gtf2f1 (MGP_CAROLIEiJ_G0021799) #22	Pspn (MGP_CAROLIEiJ_G0021798) #23	Alkbh7 (MGP_CAROLIEiJ_G0021797) #24	Clpp (MGP_CAROLIEiJ_G0021796) #25	Acer1 (MGP_CAROLIEiJ_G0021795) #26	Mllt1 (MGP_CAROLIEiJ_G0021794) #27	Acsbg3 (MGP_CAROLIEiJ_G0021793) #28	Acsbg2 (MGP_CAROLIEiJ_G0021792) #29	Rfx2 (MGP_CAROLIEiJ_G0021791) #30	Prr22 (MGP_CAROLIEiJ_G0021790) #31	Dus3l (MGP_CAROLIEiJ_G0021789) #32	Nrtn (MGP_CAROLIEiJ_G0021788) #33	Ndufa11 (MGP_CAROLIEiJ_G0021787) #35	Vmac (MGP_CAROLIEiJ_G0021786)	Ranbp3 (MGP_CAROLIEiJ_G0021785)	Catsperd (MGP_CAROLIEiJ_G0021784)
Shrew mouse	MODERN SPECIES	9	Adgre1 (MGP_PahariEiJ_G0020803)	Vav1 (MGP_PahariEiJ_G0020802)	Trip10 (MGP_PahariEiJ_G0020801) #7	Gpr108 (MGP_PahariEiJ_G0020800) #8	C3 (MGP_PahariEiJ_G0020799) #9	Tnfsf14 (MGP_PahariEiJ_G0020798) #10	Cd70 (MGP_PahariEiJ_G0020797) #13	Tnfsf9 (MGP_PahariEiJ_G0020796) #14	MGP_PahariEiJ_G0020795	Tubb4a (MGP_PahariEiJ_G0020794) #15	Dennd1c (MGP_PahariEiJ_G0020793) #16	Crb3 (MGP_PahariEiJ_G0020792) #17	Slc25a23 (MGP_PahariEiJ_G0020791) #18	Slc25a41 (MGP_PahariEiJ_G0020790) #19	Khsrp (MGP_PahariEiJ_G0020789) #20	Gtf2f1 (MGP_PahariEiJ_G0020788) #22	Pspn (MGP_PahariEiJ_G0020787) #23	Alkbh7 (MGP_PahariEiJ_G0020786) #24	Clpp (MGP_PahariEiJ_G0020785) #25	Acer1 (MGP_PahariEiJ_G0020784) #26	Mllt1 (MGP_PahariEiJ_G0020783) #27	Acsbg3 (MGP_PahariEiJ_G0020782) #28	Acsbg2 (MGP_PahariEiJ_G0020781) #29	Rfx2 (MGP_PahariEiJ_G0020780) #30	Prr22 (MGP_PahariEiJ_G0020779) #31	Dus3l (MGP_PahariEiJ_G0020778) #32	Nrtn (MGP_PahariEiJ_G0020777) #33	Ndufa11 (MGP_PahariEiJ_G0020776) #35	Vmac (MGP_PahariEiJ_G0020775)	Ranbp3 (MGP_PahariEiJ_G0020774)	Catsperd (MGP_PahariEiJ_G0020773)
Rat	MODERN SPECIES	19	Vav1 (ENSRNOG00000050430)	Trip10 (ENSRNOG00000055524) #7	Gpr108 (ENSRNOG00000046128) #8	C3 (ENSRNOG00000046834) #9	Tnfsf14 (ENSRNOG00000047730) #10	Cd70 (ENSRNOG00000051015) #13	Brcc3 (ENSRNOG00000048061)	Tnfsf9 (ENSRNOG00000045595) #14	Tubb4a (ENSRNOG00000047505) #15	Dennd1c (ENSRNOG00000046050) #16	Crb3 (ENSRNOG00000070099) #17	Slc25a23 (ENSRNOG00000047781) #18	Slc25a41 (ENSRNOG00000048853) #19	Khsrp (ENSRNOG00000047628) #20	Gm17949 (ENSRNOG00000064877) #21	Gtf2f1 (ENSRNOG00000047134) #22	Pspn (ENSRNOG00000071190) #23	Alkbh7 (ENSRNOG00000047089) #24	Clpp (ENSRNOG00000047052) #25	Acer1 (ENSRNOG00000047368) #26	Mllt1 (ENSRNOG00000048736) #27	Acsbg3 (ENSRNOG00000047549) #28	Acsbg2 (ENSRNOG00000045947) #29	Rfx2 (ENSRNOG00000045846) #30	Prr22 (ENSRNOG00000047295) #31	Dus3l (ENSRNOG00000050381) #32	Nrtn (ENSRNOG00000048651) #33	Ndufa11 (ENSRNOG00000048320) #35	Vmac (ENSRNOG00000065863)	Caps (ENSRNOG00000063246) #37	Ranbp3 (ENSRNOG00000049785)
Upper Galilee mountains blind mole rat	MODERN SPECIES	975	Adgre4 (ENSNGAG00000011964)	Adgre1 (ENSNGAG00000023217)	Vav1 (ENSNGAG00000018348)	Trip10 (ENSNGAG00000014674) #7	Gpr108 (ENSNGAG00000016378) #8	C3 (ENSNGAG00000022830) #9	Tnfsf14 (ENSNGAG00000023106) #10	Cd70 (ENSNGAG00000013982) #13	Tubb4a (ENSNGAG00000019498) #15	Dennd1c (ENSNGAG00000015322) #16	Crb3 (ENSNGAG00000023048) #17	Slc25a23 (ENSNGAG00000023065) #18	Slc25a41 (ENSNGAG00000019185) #19	Khsrp (ENSNGAG00000023093) #20	Gm17949 (ENSNGAG00000023078) #21	Gtf2f1 (ENSNGAG00000023277) #22	Pspn (ENSNGAG00000022337) #23	Alkbh7 (ENSNGAG00000018037) #24	Clpp (ENSNGAG00000020943) #25	Acer1 (ENSNGAG00000021750) #26	Mllt1 (ENSNGAG00000015361) #27	Rfx2 (ENSNGAG00000018829) #30	Prr22 (ENSNGAG00000023052) #31	Dus3l (ENSNGAG00000017157) #32	Nrtn (ENSNGAG00000021333) #33	Ndufa11 (ENSNGAG00000017779) #35	Vmac (ENSNGAG00000016642)	Ranbp3 (ENSNGAG00000015130)	Catsperd (ENSNGAG00000021716)	Lonp1 (ENSNGAG00000018118)	ENSNGAG00000021002
Lesser Egyptian jerboa	MODERN SPECIES	55			Vav1 (ENSJJAG00000023634)	Trip10 (ENSJJAG00000011683) #7	Gpr108 (ENSJJAG00000023696) #8	C3 (ENSJJAG00000024349) #9	Tnfsf14 (ENSJJAG00000004377) #10	Cd70 (ENSJJAG00000019950) #13	Tubb4a (ENSJJAG00000001103) #15	ENSJJAG00000023239 #16	Crb3 (ENSJJAG00000017361) #17	Slc25a23 (ENSJJAG00000018390) #18	Slc25a41 (ENSJJAG00000009731) #19	Khsrp (ENSJJAG00000006370) #20	Gm17949 (ENSJJAG00000017204) #21	Gtf2f1 (ENSJJAG00000016614) #22	Pspn (ENSJJAG00000023140) #23	Alkbh7 (ENSJJAG00000023908) #24	ENSJJAG00000019233 #25	Acer1 (ENSJJAG00000018285) #26	Mllt1 (ENSJJAG00000017227) #27	Acsbg3 (ENSJJAG00000021099) #28	Acsbg2 (ENSJJAG00000022623) #29	Rfx2 (ENSJJAG00000009362) #30	Prr22 (ENSJJAG00000020858) #31	Dus3l (ENSJJAG00000023742) #32	Nrtn (ENSJJAG00000016578) #33	Ndufa11 (ENSJJAG00000023264) #35	Vmac (ENSJJAG00000021312)	ENSJJAG00000017779 #37	Ranbp3 (ENSJJAG00000007163)
Kangaroo rat	MODERN SPECIES	383	C2cd4c (ENSDORG00000012207)	ENSDORG00000028256	Mier2 (ENSDORG00000008994)	Plpp2 (ENSDORG00000028750)	Vav1 (ENSDORG00000014409)	Trip10 (ENSDORG00000009210) #7	Gpr108 (ENSDORG00000009208) #8	C3 (ENSDORG00000009909) #9	Tnfsf14 (ENSDORG00000028843) #10	Tubb4a (ENSDORG00000030020) #15	ENSDORG00000029765 #16	Crb3 (ENSDORG00000002452) #17	Slc25a41 (ENSDORG00000002448) #19	Khsrp (ENSDORG00000002447) #20	Gm17949 (ENSDORG00000002446) #21	Gtf2f1 (ENSDORG00000002445) #22	Pspn (ENSDORG00000002443) #23	Alkbh7 (ENSDORG00000002441) #24	Clpp (ENSDORG00000002435) #25	Acer1 (ENSDORG00000013614) #26	Mllt1 (ENSDORG00000006056) #27	Acsbg3 (ENSDORG00000026047) #28	Acsbg2 (ENSDORG00000024853) #29	Rfx2 (ENSDORG00000008083) #30	Ranbp3 (ENSDORG00000003144)	ENSDORG00000003143 #37	Vmac (ENSDORG00000029939)	Ndufa11 (ENSDORG00000003140) #35	Dus3l (ENSDORG00000006754) #32	Lonp1 (ENSDORG00000016207)	Rpl36 (ENSDORG00000025864)
Rodentia_A	ANCESTRAL SPECIES	16	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a #7	ENSGT00940000160446 #8	ENSGT00940000154063.C.a.b #9	ENSGT01060000248544.a.a.b.a.a #10	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043 #28	ENSGT00940000155332.A #29	ENSGT01050000244879.a.a.a #30	ENSGT00940000158588	ENSGT00940000162442 #37	ENSGT00390000007212	ENSGT00390000012434 #35	ENSGT00940000163125 #34	ENSGT00950000182993.A.a #33	ENSGT00550000075134 #32
Sciuridae	ANCESTRAL SPECIES	23	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a #7	ENSGT00940000160446 #8	ENSGT00940000154063.C.a.b #9	ENSGT01060000248544.a.a.b.a.a #10	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043 #28	ENSGT00940000155332.A #29	ENSGT01050000244879.a.a.a #30	ENSGT00940000158588	ENSGT00940000162442 #37	ENSGT00390000007212	ENSGT00390000012434 #35	ENSGT00940000163125 #34	ENSGT00950000182993.A.a #33	ENSGT00550000075134 #32
Marmotini	ANCESTRAL SPECIES	24	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a #7	ENSGT00940000160446 #8	ENSGT01060000248544.a.a.b.a.a #10	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a.e #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043 #28	ENSGT00940000155332.A #29	ENSGT01050000244879.a.a.a #30	ENSGT00940000158588	ENSGT00940000162442 #37	ENSGT00390000007212	ENSGT00390000012434 #35	ENSGT00940000163125 #34	ENSGT00950000182993.A.a #33	ENSGT00550000075134 #32
Marmotini_b	ANCESTRAL SPECIES	9	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a #7	ENSGT00940000160446 #8	ENSGT01060000248544.a.a.b.a.a #10	ENSGT00390000014595.b.d	ENSGT00390000006744 #13	ENSGT00390000006244 #14	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a.e #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27	ENSGT00940000164043 #28	ENSGT00940000155332.A #29	ENSGT01050000244879.a.a.a #30	ENSGT00940000158588	ENSGT00940000162442 #37	ENSGT00390000007212	ENSGT00390000012434 #35	ENSGT00940000163125 #34	ENSGT00950000182993.A.a #33	ENSGT00550000075134 #32
Arctic ground squirrel	MODERN SPECIES	301					TNFSF14 (ENSUPAG00010023671) #10	ENSUPAG00010023669	CD70 (ENSUPAG00010023668) #13	ENSUPAG00010023667 #14	TUBB4A (ENSUPAG00010023665) #15	DENND1C (ENSUPAG00010023662) #16	ENSUPAG00010023661 #17	SLC25A23 (ENSUPAG00010023660) #18	SLC25A41 (ENSUPAG00010023658) #19	KHSRP (ENSUPAG00010023657) #20	ENSUPAG00010023656 #21	GTF2F1 (ENSUPAG00010023655) #22	PSPN (ENSUPAG00010023654) #23	ALKBH7 (ENSUPAG00010023653) #24	CLPP (ENSUPAG00010023652) #25	ACER1 (ENSUPAG00010023651) #26	MLLT1 (ENSUPAG00010023650) #27	ENSUPAG00010023649 #28	ACSBG2 (ENSUPAG00010023648) #29	RFX2 (ENSUPAG00010023647) #30	RANBP3 (ENSUPAG00010023645)	CAPS (ENSUPAG00010023646) #37	VMAC (ENSUPAG00010023644)	ENSUPAG00010023643 #35	ENSUPAG00010023642 #34	NRTN (ENSUPAG00010023641) #33	DUS3L (ENSUPAG00010023640) #32
Squirrel	MODERN SPECIES	188	VAV1 (ENSSTOG00000010806)	TRIP10 (ENSSTOG00000004959) #7	GPR108 (ENSSTOG00000028930) #8	ENSSTOG00000032813 ##9	TNFSF14 (ENSSTOG00000021016) #10	ENSSTOG00000029829	CD70 (ENSSTOG00000027620) #13	TUBB4A (ENSSTOG00000020465) #15	ENSSTOG00000032756 #16	ENSSTOG00000002404 #16	CRB3 (ENSSTOG00000029565) #17	SLC25A23 (ENSSTOG00000002387) #18	SLC25A41 (ENSSTOG00000023022) #19	KHSRP (ENSSTOG00000002371) #20	ENSSTOG00000032166 #21	GTF2F1 (ENSSTOG00000025689) #22	PSPN (ENSSTOG00000023397) #23	ALKBH7 (ENSSTOG00000002368) #24	CLPP (ENSSTOG00000028013) #25	ACER1 (ENSSTOG00000002348) #26	ENSSTOG00000022476	MLLT1 (ENSSTOG00000002340) #27	ENSSTOG00000019704 #28	ENSSTOG00000007511 #29	RFX2 (ENSSTOG00000027723) #30	ENSSTOG00000034262	RANBP3 (ENSSTOG00000006462)	CAPS (ENSSTOG00000006493) #37	VMAC (ENSSTOG00000012822)	NDUFA11 (ENSSTOG00000028356) #35	ENSSTOG00000022255 #34
Eurasian red squirrel	MODERN SPECIES	7	VAV1 (ENSSVLG00005024496)	SH2D3A (ENSSVLG00005024392)	TRIP10 (ENSSVLG00005024340) #7	GPR108 (ENSSVLG00005024305) #8	C3 (ENSSVLG00005023985) #9	TNFSF14 (ENSSVLG00005023899) #10	CD70 (ENSSVLG00005023872) #13	TNFSF9 (ENSSVLG00005023843) #14	TUBB4A (ENSSVLG00005023819) #15	DENND1C (ENSSVLG00005023643) #16	CRB3 (ENSSVLG00005023581) #17	SLC25A23 (ENSSVLG00005023541) #18	SLC25A41 (ENSSVLG00005023479) #19	KHSRP (ENSSVLG00005023444) #20	ENSSVLG00005023383 #21	GTF2F1 (ENSSVLG00005023301) #22	PSPN (ENSSVLG00005023279) #23	ALKBH7 (ENSSVLG00005023240) #24	CLPP (ENSSVLG00005023216) #25	ACER1 (ENSSVLG00005023163) #26	MLLT1 (ENSSVLG00005023111) #27	ENSSVLG00005022830 #28	ACSBG2 (ENSSVLG00005022613) #29	RFX2 (ENSSVLG00005022368) #30	RANBP3 (ENSSVLG00005022208)	CAPS (ENSSVLG00005022099) #37	VMAC (ENSSVLG00005022064)	NDUFA11 (ENSSVLG00005022032) #35	ENSSVLG00005021990 #34	NRTN (ENSSVLG00005021968) #33	DUS3L (ENSSVLG00005021792) #32
Hystricomorpha	ANCESTRAL SPECIES	19	ENSGT00940000162163	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a #7	ENSGT00940000160446 #8	ENSGT00940000154063.C.a.b #9	ENSGT01060000248544.a.a.b.a.a #10	ENSGT00390000006744 #13	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800.b #27	ENSGT00940000164043 #28	ENSGT00940000155332.A #29	ENSGT01050000244879.a.a.a #30	ENSGT00940000158588	ENSGT00940000162442 #37	ENSGT00390000007212	ENSGT00390000012434 #35	ENSGT00940000163125 #34	ENSGT00950000182993.A.a #33	ENSGT00550000075134 #32
Hystricomorpha_a	ANCESTRAL SPECIES	15	ENSGT00940000162163	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a #7	ENSGT00940000160446 #8	ENSGT00940000154063.C.a.b #9	ENSGT01060000248544.a.a.b.a.a #10	ENSGT00390000006744 #13	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800.b #27	ENSGT00940000164043 #28	ENSGT00940000155332.A #29	ENSGT01050000244879.a.a.a #30	ENSGT00940000158588	ENSGT00940000162442 #37	ENSGT00390000007212	ENSGT00390000012434 #35	ENSGT00940000163125 #34	ENSGT00950000182993.A.a #33	ENSGT00550000075134 #32
Hystricomorpha_b	ANCESTRAL SPECIES	17	ENSGT00940000162163	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a #7	ENSGT00940000160446 #8	ENSGT00940000154063.C.a.b #9	ENSGT01060000248544.a.a.b.a.a #10	ENSGT00390000006744 #13	ENSGT00940000161972 #15	ENSGT00940000161573 #16	ENSGT00950000183101.a.b.a #17	ENSGT00940000159428 #18	ENSGT00940000162419 #19	ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00950000182993.B.b #23	ENSGT00390000014585 #24	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800.b #27	ENSGT00940000164043 #28	ENSGT00940000155332.A #29	ENSGT01050000244879.a.a.a #30	ENSGT00940000158588	ENSGT00940000162442 #37	ENSGT00390000007212	ENSGT00390000012434 #35	ENSGT00950000182993.A.a #33	ENSGT00550000075134 #32	ENSGT00390000016128 #31
Degu	MODERN SPECIES	91	ENSODEG00000020296	VAV1 (ENSODEG00000015478)	TRIP10 (ENSODEG00000015929) #7	GPR108 (ENSODEG00000016288) #8	C3 (ENSODEG00000015506) #9	TNFSF14 (ENSODEG00000015436) #10	ENSODEG00000020289	ENSODEG00000015175	TUBB4A (ENSODEG00000015772) #15	ENSODEG00000015746 #16	CRB3 (ENSODEG00000015295) #17	SLC25A23 (ENSODEG00000014916) #18	SLC25A41 (ENSODEG00000015990) #19	KHSRP (ENSODEG00000015021) #20	ENSODEG00000015969 #21	GTF2F1 (ENSODEG00000014900) #22	PSPN (ENSODEG00000014761) #23	ALKBH7 (ENSODEG00000015141) #24	CLPP (ENSODEG00000015485) #25	ACER1 (ENSODEG00000015726) #26	MLLT1 (ENSODEG00000014883) #27	ENSODEG00000015920 #28	ENSODEG00000015714 #29	RFX2 (ENSODEG00000015368) #30	RANBP3 (ENSODEG00000015257)	CAPS (ENSODEG00000016529) #37	VMAC (ENSODEG00000014819)	NDUFA11 (ENSODEG00000015123) #35	NRTN (ENSODEG00000014997) #33	DUS3L (ENSODEG00000015771) #32	PRR22 (ENSODEG00000015287) #31
Long-tailed chinchilla	MODERN SPECIES	202	VAV1 (ENSCLAG00000008423)	SH2D3A (ENSCLAG00000009886)	TRIP10 (ENSCLAG00000009696) #7	GPR108 (ENSCLAG00000012060) #8	C3 (ENSCLAG00000008464) #9	TNFSF14 (ENSCLAG00000008813) #10	ENSCLAG00000009197 #13	ENSCLAG00000009403 #13	TUBB4A (ENSCLAG00000008831) #15	DENND1C (ENSCLAG00000012303) #16	ENSCLAG00000014016 #17	SLC25A23 (ENSCLAG00000015826) #18	SLC25A41 (ENSCLAG00000006414) #19	KHSRP (ENSCLAG00000007309) #20	ENSCLAG00000007910 #21	GTF2F1 (ENSCLAG00000008779) #22	PSPN (ENSCLAG00000016653) #23	ALKBH7 (ENSCLAG00000017244) #24	CLPP (ENSCLAG00000009974) #25	ACER1 (ENSCLAG00000011663) #26	MLLT1 (ENSCLAG00000011833) #27	ENSCLAG00000006362 #28	ACSBG2 (ENSCLAG00000007301) #29	RFX2 (ENSCLAG00000008242) #30	RANBP3 (ENSCLAG00000011775)	CAPS (ENSCLAG00000013758) #37	VMAC (ENSCLAG00000012168)	NDUFA11 (ENSCLAG00000008043) #35	DUS3L (ENSCLAG00000008470) #32	PRR22 (ENSCLAG00000009039) #31	LONP1 (ENSCLAG00000007239)
Guinea pig	MODERN SPECIES	229									ENSCPOG00000022803 #13	TUBB4A (ENSCPOG00000003237) #15	DENND1C (ENSCPOG00000003232) #16	CRB3 (ENSCPOG00000024888) #17	SLC25A23 (ENSCPOG00000011096) #18	SLC25A41 (ENSCPOG00000029988) #19	KHSRP (ENSCPOG00000005140) #20	GTF2F1 (ENSCPOG00000012632) #22	PSPN (ENSCPOG00000038963) #23	ALKBH7 (ENSCPOG00000013958) #24	CLPP (ENSCPOG00000013954) #25	ACER1 (ENSCPOG00000021961) #26	MLLT1 (ENSCPOG00000001260) #27	ENSCPOG00000025754 #28	ENSCPOG00000014317 #29	RFX2 (ENSCPOG00000024260) #30	RANBP3 (ENSCPOG00000021646)	CAPS (ENSCPOG00000026058) #37	VMAC (ENSCPOG00000014675)	NDUFA11 (ENSCPOG00000019390) #35	ENSCPOG00000037079 #34	ENSCPOG00000037083 #34	NRTN (ENSCPOG00000037952) #33
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	21	TRIP10 (ENSHGLG00000006018) #7	GPR108 (ENSHGLG00000010354) #8	TNFSF14 (ENSHGLG00000041682) #10	ENSHGLG00000021141	CD70 (ENSHGLG00000013155) #13	ENSHGLG00000041462	ENSHGLG00000008762	ENSHGLG00000036699	ENSHGLG00000017930 #14	ENSHGLG00000039660	TUBB4A (ENSHGLG00000038896) #15	DENND1C (ENSHGLG00000038310) #16	ENSHGLG00000048231 #17	SLC25A23 (ENSHGLG00000007588) #18	KHSRP (ENSHGLG00000013239) #20	PSPN (ENSHGLG00000018421) #22	ALKBH7 (ENSHGLG00000018436) #24	ENSHGLG00000010702 #25	ENSHGLG00000048812	ENSHGLG00000007120	ENSHGLG00000005716	ENSHGLG00000045280	ENSHGLG00000045808	ENSHGLG00000041157	ENSHGLG00000049858	ENSHGLG00000033621	ENSHGLG00000016971	ENSHGLG00000015081	CNN1 (ENSHGLG00000015039)	ECSIT (ENSHGLG00000015014)	ZNF653 (ENSHGLG00000015197)
Naked mole-rat female	MODERN SPECIES	22	ENSHGLG00000042578	ENSHGLG00000005121	ENSHGLG00000047626	ENSHGLG00000038322	ENSHGLG00000040375	ENSHGLG00000010182	ENSHGLG00000044680	ENSHGLG00000034383	DDX18 (ENSHGLG00000016324)	ENSHGLG00000042944	ENSHGLG00000016311	INSIG2 (ENSHGLG00000048151)	EN1 (ENSHGLG00000008502)	MARCO (ENSHGLG00000007212)	C1QL2 (ENSHGLG00000005027)	ENSHGLG00000047186 #22	STEAP3 (ENSHGLG00000041983)	C2orf76 (ENSHGLG00000017852)	ENSHGLG00000017824	ENSHGLG00000015203	TMEM37 (ENSHGLG00000015189)	SCTR (ENSHGLG00000014846)	CFAP221 (ENSHGLG00000016525)	ENSHGLG00000012507	TMEM177 (ENSHGLG00000014801)	PTPN4 (ENSHGLG00000008471)	ENSHGLG00000035501	ENSHGLG00000008402	TMEM185B (ENSHGLG00000034185)	RALB (ENSHGLG00000037096)	ENSHGLG00000032912
Lagomorpha	ANCESTRAL SPECIES	283														ENSGT00940000156051 #20	ENSGT00940000163693 #21	ENSGT00440000038032 #22	ENSGT00390000014585 #24	ENSGT00950000182993.B.b #23	ENSGT00390000005830 #25	ENSGT00730000110920.b.a.a #26	ENSGT00940000158800 #27
Rabbit	MODERN SPECIES	903													ENSOCUG00000026747 #20	ALKBH7 (ENSOCUG00000006905) #24	ENSOCUG00000023195 #21	ENSOCUG00000027799 #22	PSPN (ENSOCUG00000006908) #23	CLPP (ENSOCUG00000026119) #25	ACER1 (ENSOCUG00000021869) #26	ENSOCUG00000032056 #27