Rodentia_A	ANCESTRAL SPECIES	4	ENSGT00390000006791	ENSGT00950000183194.b #9	ENSGT00950000183194.a.a ##9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #27	ENSGT00530000063960 #28	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #31	ENSGT00500000045764	ENSGT00390000018898 #32	ENSGT00390000017489 #33	ENSGT00940000162686	ENSGT00390000008751.a #34	ENSGT00530000063718.a.b #35
Sciuridae	ANCESTRAL SPECIES	14	ENSGT00950000183194.b #9	ENSGT00950000183194.a.a ##9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00960000188846 #20	ENSGT00530000064453	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #27	ENSGT00530000063960 #28	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #31	ENSGT00390000018898 #32	ENSGT00390000017489 #33	ENSGT00940000162686	ENSGT00390000008751.a #34	ENSGT00530000063718.a.b #35	ENSGT00940000158004 #36
Marmotini	ANCESTRAL SPECIES	4	ENSGT00390000006791	ENSGT00950000183194.b #9	ENSGT00950000183194.a.a ##9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00960000188846 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #27	ENSGT00530000063960 #28	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331.u.b #31	ENSGT00390000018898 #32	ENSGT00390000017489 #33	ENSGT00940000162686	ENSGT00390000008751.a #34	ENSGT00530000063718.a.b #35	ENSGT00940000158004 #36
Alpin marmot	MODERN SPECIES	76	PRR5 (ENSMMMG00000022969) #7	RTL6 (ENSMMMG00000023111) #8	PARVG (ENSMMMG00000023115) #9	SAMM50 (ENSMMMG00000002215) #10	PNPLA3 (ENSMMMG00000002236) #11	PNPLA5 (ENSMMMG00000002336) #12	SULT4A1 (ENSMMMG00000002358) #13	EFCAB6 (ENSMMMG00000002371) #14	MPPED1 (ENSMMMG00000002444) #15	SCUBE1 (ENSMMMG00000002455) #16	TTLL12 (ENSMMMG00000002675) #17	TSPO (ENSMMMG00000002740) #18	ENSMMMG00000002745 #19	ENSMMMG00000002773 #20	TTLL1 (ENSMMMG00000002791) #21	PACSIN2 (ENSMMMG00000002833) #22	ARFGAP3 (ENSMMMG00000002860) #23	A4GALT (ENSMMMG00000002992) #24	CYB5R3 (ENSMMMG00000002994) #25	POLDIP3 (ENSMMMG00000003008) #26	RRP7A (ENSMMMG00000003038) #27	SERHL2 (ENSMMMG00000003053) #28	NFAM1 (ENSMMMG00000003088) #29	TCF20 (ENSMMMG00000003101) #30	ENSMMMG00000003138 #31	NDUFA6 (ENSMMMG00000003211) #32	SMDT1 (ENSMMMG00000003226) #33	NAGA (ENSMMMG00000003269) #34	ENSMMMG00000003326 #35	ENSMMMG00000003339 #36	SMIM45 (ENSMMMG00000003396) #37
Marmotini_b	ANCESTRAL SPECIES	60	ENSGT00390000006791	ENSGT00950000183194.b #9	ENSGT00950000183194.a.a ##9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00960000188846 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #27	ENSGT00530000063960 #28	ENSGT00940000157896 #30	ENSGT00940000153331.u.b #31	ENSGT00940000153331.u.a ##31	ENSGT00390000018898 #32	ENSGT00390000017489 #33	ENSGT00940000162686	ENSGT00390000008751.a #34
Arctic ground squirrel	MODERN SPECIES	136	SHISAL1 (ENSUPAG00010001734)	PARVG (ENSUPAG00010001757) #9	PARVB (ENSUPAG00010001809) ##9	SAMM50 (ENSUPAG00010001870) #10	PNPLA3 (ENSUPAG00010001903) #11	PNPLA5 (ENSUPAG00010001928) #12	SULT4A1 (ENSUPAG00010001963) #13	EFCAB6 (ENSUPAG00010002017) #14	MPPED1 (ENSUPAG00010002082) #15	SCUBE1 (ENSUPAG00010002113) #16	TTLL12 (ENSUPAG00010002356) #17	TSPO (ENSUPAG00010002375) #18	MCAT (ENSUPAG00010002384) #19	ENSUPAG00010002398 #20	TTLL1 (ENSUPAG00010002417) #21	PACSIN2 (ENSUPAG00010002434) #22	ARFGAP3 (ENSUPAG00010002503) #23	A4GALT (ENSUPAG00010002535) #24	CYB5R3 (ENSUPAG00010002538) #25	POLDIP3 (ENSUPAG00010002551) #26	RRP7A (ENSUPAG00010002574) #27	SERHL2 (ENSUPAG00010002586) #28	TCF20 (ENSUPAG00010002621) #30
Squirrel	MODERN SPECIES	318	RTL6 (ENSSTOG00000005224) #8	SHISAL1 (ENSSTOG00000029147)	PARVB (ENSSTOG00000027879) ##9	SAMM50 (ENSSTOG00000013891) #10	PNPLA3 (ENSSTOG00000014059) #11	PNPLA5 (ENSSTOG00000019885) #12	SULT4A1 (ENSSTOG00000023129) #13	EFCAB6 (ENSSTOG00000004012) #14	MPPED1 (ENSSTOG00000027935) #15	SCUBE1 (ENSSTOG00000002898) #16	TTLL12 (ENSSTOG00000002879) #17	TSPO (ENSSTOG00000002875) #18	MCAT (ENSSTOG00000001359) #19	ENSSTOG00000000060 #20	TTLL1 (ENSSTOG00000026789) #21	PACSIN2 (ENSSTOG00000004795) #22	ARFGAP3 (ENSSTOG00000020407) #23	ENSSTOG00000023571 #24	CYB5R3 (ENSSTOG00000025231) #25	POLDIP3 (ENSSTOG00000008230) #26	RRP7A (ENSSTOG00000003111) #27	ENSSTOG00000022403 #28	TCF20 (ENSSTOG00000025883) #30	ENSSTOG00000031756 #31	ENSSTOG00000020124 ##31	NDUFA6 (ENSSTOG00000015696) #32	SMDT1 (ENSSTOG00000015700) #33	NAGA (ENSSTOG00000023109) #34
Eurasian red squirrel	MODERN SPECIES	14	PARVG (ENSSVLG00005005192) #9	PARVB (ENSSVLG00005005116) ##9	SAMM50 (ENSSVLG00005005065) #10	PNPLA3 (ENSSVLG00005005043) #11	PNPLA5 (ENSSVLG00005004974) #12	SULT4A1 (ENSSVLG00005004928) #13	EFCAB6 (ENSSVLG00005004762) #14	MPPED1 (ENSSVLG00005004708) #15	SCUBE1 (ENSSVLG00005004646) #16	TTLL12 (ENSSVLG00005004617) #17	TSPO (ENSSVLG00005004596) #18	MCAT (ENSSVLG00005004575) #19	ENSSVLG00005004560	ENSSVLG00005004532	TTLL1 (ENSSVLG00005004510) #21	PACSIN2 (ENSSVLG00005004476) #22	ARFGAP3 (ENSSVLG00005004430) #23	A4GALT (ENSSVLG00005004406) #24	ENSSVLG00005004382 #25	POLDIP3 (ENSSVLG00005004309) #26	RRP7A (ENSSVLG00005004268) #27	SERHL2 (ENSSVLG00005004215) #28	NFAM1 (ENSSVLG00005004168) #29	TCF20 (ENSSVLG00005004152) #30	ENSSVLG00005003890 #31	ENSSVLG00005003721	ENSSVLG00005003686 #31	NDUFA6 (ENSSVLG00005003661) #32	SMDT1 (ENSSVLG00005003647) #33	PHETA2 (ENSSVLG00005003635)	NAGA (ENSSVLG00005003614) #34
Hystricomorpha	ANCESTRAL SPECIES	13	ENSGT00390000006791	ENSGT00950000183194.b #9	ENSGT00950000183194.a.a ##9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331.q.b #31	ENSGT00940000153331.q.a.a.a #31	ENSGT00940000153331.q.a.a.b #31	ENSGT00940000153331.q.a.b #31	ENSGT00940000153331.r #31	ENSGT00500000045764	ENSGT00390000018898 #32	ENSGT00390000017489 #33
Hystricomorpha_a	ANCESTRAL SPECIES	6	ENSGT00390000006791	ENSGT00950000183194.b #9	ENSGT00950000183194.a.a ##9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331.q.b #31	ENSGT00940000153331.q.a.a.a #31	ENSGT00940000153331.q.a.a.b #31	ENSGT00940000153331.q.a.b #31	ENSGT00940000153331.r #31	ENSGT00500000045764	ENSGT00390000018898 #32	ENSGT00390000017489 #33
Guinea pig	MODERN SPECIES	28	SHISAL1 (ENSCPOG00000037356)	PARVG (ENSCPOG00000022528) #9	PARVB (ENSCPOG00000019700) ##9	SAMM50 (ENSCPOG00000005200) #10	PNPLA3 (ENSCPOG00000020336) #11	PNPLA5 (ENSCPOG00000008894) #12	SULT4A1 (ENSCPOG00000012199) #13	EFCAB6 (ENSCPOG00000004320) #14	MPPED1 (ENSCPOG00000002983) #15	SCUBE1 (ENSCPOG00000026406) #16	TTLL12 (ENSCPOG00000002155) #17	TSPO (ENSCPOG00000031571) #18	MCAT (ENSCPOG00000026399) #19	ENSCPOG00000022451	TTLL1 (ENSCPOG00000002675) #21	PACSIN2 (ENSCPOG00000001359) #22	ARFGAP3 (ENSCPOG00000021017) #23	A4GALT (ENSCPOG00000001858) #24	CYB5R3 (ENSCPOG00000020349) #25	POLDIP3 (ENSCPOG00000019524) #26	RRP7A (ENSCPOG00000030547) #27	ENSCPOG00000014975	NFAM1 (ENSCPOG00000019664) #29	TCF20 (ENSCPOG00000024611) #30	ENSCPOG00000031413 #31	ENSCPOG00000034989 #31	ENSCPOG00000036957 #31	ENSCPOG00000035390 #31	ENSCPOG00000035752 #31	ENSCPOG00000033260 #31	ENSCPOG00000039514 #31
Hystricomorpha_b	ANCESTRAL SPECIES	2	ENSGT00390000006791	ENSGT00950000183194.b #9	ENSGT00950000183194.a.a ##9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331.q.b #31	ENSGT00940000153331.q.a.b #31	ENSGT00940000153331.q.a.a.b #31	ENSGT00940000153331.r #31	ENSGT00500000045764	ENSGT00390000018898 #32	ENSGT00390000017489 #33	ENSGT00940000162686
Long-tailed chinchilla	MODERN SPECIES	120	RTL6 (ENSCLAG00000018095) #8	SHISAL1 (ENSCLAG00000017217)	PARVG (ENSCLAG00000017133) #9	PARVB (ENSCLAG00000017228) ##9	SAMM50 (ENSCLAG00000017226) #10	PNPLA3 (ENSCLAG00000016788) #11	PNPLA5 (ENSCLAG00000016574) #12	SULT4A1 (ENSCLAG00000017221) #13	EFCAB6 (ENSCLAG00000016383) #14	MPPED1 (ENSCLAG00000016822) #15	SCUBE1 (ENSCLAG00000016931) #16	TTLL12 (ENSCLAG00000017211) #17	TSPO (ENSCLAG00000016768) #18	MCAT (ENSCLAG00000017236) #19	TTLL1 (ENSCLAG00000017162) #21	PACSIN2 (ENSCLAG00000016516) #22	ARFGAP3 (ENSCLAG00000016273) #23	A4GALT (ENSCLAG00000018104) #24	CYB5R3 (ENSCLAG00000015151) #25	POLDIP3 (ENSCLAG00000016864) #26	RRP7A (ENSCLAG00000016715) #27	NFAM1 (ENSCLAG00000016829) #29	TCF20 (ENSCLAG00000016780) #30	ENSCLAG00000017192 #31	ENSCLAG00000016575 #31	ENSCLAG00000017186 #31	ENSCLAG00000017000	NDUFA6 (ENSCLAG00000016285) #32	SMDT1 (ENSCLAG00000016250) #33	PHETA2 (ENSCLAG00000017176)	NAGA (ENSCLAG00000017177) #34
Degu	MODERN SPECIES	194	SHISAL1 (ENSODEG00000015668)	PARVG (ENSODEG00000014889) #9	PARVB (ENSODEG00000014657) ##9	SAMM50 (ENSODEG00000014631) #10	PNPLA3 (ENSODEG00000014968) #11	PNPLA5 (ENSODEG00000015510) #12	SULT4A1 (ENSODEG00000014672) #13	EFCAB6 (ENSODEG00000014555) #14	MPPED1 (ENSODEG00000016392) #15	ENSODEG00000014829 #16	TTLL12 (ENSODEG00000015110) #17	TSPO (ENSODEG00000015371) #18	MCAT (ENSODEG00000014684) #19	ENSODEG00000015823	TTLL1 (ENSODEG00000015690) #21	PACSIN2 (ENSODEG00000013973) #22	ENSODEG00000014382	ARFGAP3 (ENSODEG00000014423) #23	A4GALT (ENSODEG00000014971) #24	ENSODEG00000020211	CYB5R3 (ENSODEG00000014899) #25	POLDIP3 (ENSODEG00000014224) #26	RRP7A (ENSODEG00000015126) #27	ENSODEG00000014415 #30	ENSODEG00000014147 #31	ENSODEG00000014495 #31	ENSODEG00000015120 #31
Naked mole-rat female	MODERN SPECIES	24	ENSHGLG00000018749 #10	ENSHGLG00000043827	PNPLA5 (ENSHGLG00000005141) #12	SULT4A1 (ENSHGLG00000005968) #13	ENSHGLG00000008695	ENSHGLG00000037061	ENSHGLG00000036603	ENSHGLG00000005238 #14	MPPED1 (ENSHGLG00000005407) #15	SCUBE1 (ENSHGLG00000008233) #16	TTLL12 (ENSHGLG00000005068) #17	TSPO (ENSHGLG00000046511) #18	MCAT (ENSHGLG00000050791) #19	ENSHGLG00000008535	TTLL1 (ENSHGLG00000038614) #21	PACSIN2 (ENSHGLG00000015562) #22	ARFGAP3 (ENSHGLG00000018359) #23	A4GALT (ENSHGLG00000048655) #24	CYB5R3 (ENSHGLG00000016147) #25	POLDIP3 (ENSHGLG00000013156) #26	ENSHGLG00000015706 #27	ENSHGLG00000039538	NFAM1 (ENSHGLG00000041183) #29	TCF20 (ENSHGLG00000009579) #30	ENSHGLG00000010614 #31	ENSHGLG00000019048 #31	ENSHGLG00000018202 #31	ENSHGLG00000017416 #31	ENSHGLG00000004933 #31	ENSHGLG00000047435	NDUFA6 (ENSHGLG00000040424) #32