Chordata	ANCESTRAL SPECIES																	ENSGT00950000182973 #22
Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000182973.a #22
Gnathostomata	DUPLICATION
Gnathostomata	DUPLICATION
Gnathostomata	ANCESTRAL SPECIES	111										ENSGT00390000012980.b ##18	ENSGT00390000013715 #19	ENSGT01090000260100.A	ENSGT00940000156720 #21	ENSGT00440000034918	ENSGT00950000182973.a.c.a ##22	ENSGT00950000182973.a.c.b #22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b
Euteleostomi	ANCESTRAL SPECIES	261			ENSGT00390000007640.a	ENSGT00940000158940	ENSGT00430000031071	ENSGT00960000189759	ENSGT00970000198416	ENSGT00530000063981.a	ENSGT00940000160758	ENSGT00940000161105	ENSGT00440000035348	ENSGT00390000004190	ENSGT00940000153392.b.a	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23
Sarcopterygii	ANCESTRAL SPECIES	148	ENSGT00940000158094	ENSGT00390000007640.a	ENSGT00940000158940	ENSGT00430000031071	ENSGT00960000189759	ENSGT00970000198416	ENSGT00530000063981.a	ENSGT00940000160758	ENSGT00990000206310	ENSGT00940000161105	ENSGT00440000035348	ENSGT00390000004190	ENSGT00940000153392.b.a	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24
Tetrapoda	ANCESTRAL SPECIES	22	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000158662 #13	ENSGT00940000167968	ENSGT00960000189257	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00530000063825.A.c	ENSGT00940000153962.b #25	ENSGT00390000005178	ENSGT00940000158899	ENSGT00940000166645	ENSGT00940000158677	ENSGT00940000160423	ENSGT00940000153544.b	ENSGT00390000014557	ENSGT00390000008702	ENSGT00390000018003.b	ENSGT00390000002793	ENSGT00940000156039
Amniota	ANCESTRAL SPECIES	61	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000158662 #13	ENSGT00940000167968	ENSGT00960000189257	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT01030000235072	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00530000063825.A.c	ENSGT00940000153962.b #25
Mammalia	ANCESTRAL SPECIES	53	ENSGT00530000063981.a	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT01030000235072	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00530000063825.A.c	ENSGT00940000153962.b #25
Theria	ANCESTRAL SPECIES	2	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT01030000235072	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00530000063825.A.c	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00940000167062	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686
Eutheria	ANCESTRAL SPECIES	1	ENSGT00940000162853	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Boreoeutheria	ANCESTRAL SPECIES	6	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Euarchontoglires	ANCESTRAL SPECIES	6	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Primates	ANCESTRAL SPECIES	6	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36	ENSGT00940000158004 #37
Haplorrhini	ANCESTRAL SPECIES	3	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36	ENSGT00940000158004 #37
Simiiformes	ANCESTRAL SPECIES	27	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36	ENSGT00940000158004 #37
Catarrhini	ANCESTRAL SPECIES	22	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36	ENSGT00940000158004 #37
Cercopithecidae	ANCESTRAL SPECIES	24	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331.gb #31	ENSGT00940000153331.fb #32	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Cercopithecinae	ANCESTRAL SPECIES	21	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331.gb #31	ENSGT00940000153331.fb #32	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Cercopithecinae_a	ANCESTRAL SPECIES	20	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00530000063960.l ##27	ENSGT00530000063960.k.a #27	ENSGT00390000018482 #28	ENSGT00530000063960.k.b ##27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331.gb #31	ENSGT00940000153331.fb #32	ENSGT00390000018898.`b.a #33	ENSGT00390000017489 #34	ENSGT00940000162686
Macaca	ANCESTRAL SPECIES	20	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00530000063960.k.a #27	ENSGT00390000018482 #28	ENSGT00530000063960.k.b ##27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331.gb #31	ENSGT00940000153331.fb #32	ENSGT00390000018898.`b.a #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35
Pig-tailed macaque	MODERN SPECIES	329	SHISAL1 (ENSMNEG00000036315) #7	PARVG (ENSMNEG00000043333) #8	PARVB (ENSMNEG00000018188) #9	SAMM50 (ENSMNEG00000036146) #10	PNPLA3 (ENSMNEG00000029619) #11	PNPLA5 (ENSMNEG00000042972) #12	SULT4A1 (ENSMNEG00000020683) #13	EFCAB6 (ENSMNEG00000043102) #14	MPPED1 (ENSMNEG00000031284) #15	SCUBE1 (ENSMNEG00000044911) #16	TTLL12 (ENSMNEG00000032792) #17	TSPO (ENSMNEG00000030145) #18	MCAT (ENSMNEG00000027873) #19	BIK (ENSMNEG00000039907) #20	TTLL1 (ENSMNEG00000043299) #21	PACSIN2 (ENSMNEG00000033515) #22	ARFGAP3 (ENSMNEG00000031892) #23	A4GALT (ENSMNEG00000022402) #24	CYB5R3 (ENSMNEG00000034801) #25	POLDIP3 (ENSMNEG00000037068) #26	SERHL2 (ENSMNEG00000030210) #27	RRP7A (ENSMNEG00000033705) #28	NFAM1 (ENSMNEG00000036025) #29	TCF20 (ENSMNEG00000042128) #30	ENSMNEG00000041782 #31	CYP2D6 (ENSMNEG00000037279) #32	ENSMNEG00000033937 #33	SMDT1 (ENSMNEG00000038492) #34	NAGA (ENSMNEG00000034440) #35	WBP2NL (ENSMNEG00000032711) #36	ENSMNEG00000038786 #37
Macaca_a	ANCESTRAL SPECIES	20	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT01100000263577.a.a.b.a.a.a.b.b.b	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00940000167653	ENSGT00530000063960.l ##27	ENSGT00390000018482 #28	ENSGT00530000063960.k.b ##27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331.gb #31	ENSGT00940000153331.fb #32	ENSGT00390000018898.`b.a #33	ENSGT00390000017489 #34	ENSGT00940000162686
Crab-eating macaque	MODERN SPECIES	1	ENSMFAG00000057767	SAMM50 (ENSMFAG00000037322) #10	PNPLA3 (ENSMFAG00000036392) #11	PNPLA5 (ENSMFAG00000036380) #12	ENSMFAG00000037741 #13	EFCAB6 (ENSMFAG00000036892) #14	ENSMFAG00000033422 #15	ENSMFAG00000059840	SCUBE1 (ENSMFAG00000026094) #16	TTLL12 (ENSMFAG00000041466) #17	TSPO (ENSMFAG00000033600) #18	MCAT (ENSMFAG00000034251) #19	BIK (ENSMFAG00000041806) #20	ENSMFAG00000058764	TTLL1 (ENSMFAG00000031274) #21	PACSIN2 (ENSMFAG00000041486) #22	ENSMFAG00000054415	ARFGAP3 (ENSMFAG00000043297) #23	CYB5R3 (ENSMFAG00000031130) #25	A4GALT (ENSMFAG00000030432) #24	POLDIP3 (ENSMFAG00000044670) #26	ENSMFAG00000033348 #27	ENSMFAG00000053373	RRP7A (ENSMFAG00000058776) #28	ENSMFAG00000020523 ##27	NFAM1 (ENSMFAG00000065792) #29	TCF20 (ENSMFAG00000003509) #30	ENSMFAG00000051540	ENSMFAG00000065042	CYP2D8 (ENSMFAG00000042506) #32	ENSMFAG00000049698
Cercopithecinae_b	ANCESTRAL SPECIES	22	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760.b #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00940000167653	ENSGT00530000063960.l ##27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331.gb.b #31	ENSGT00940000153331.fb #32	ENSGT00390000018898.`b.a #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Olive baboon	MODERN SPECIES	7	PARVB (ENSPANG00000023488) #9	SAMM50 (ENSPANG00000017138) #10	PNPLA3 (ENSPANG00000041424) #11	PNPLA5 (ENSPANG00000007410) #12	SULT4A1 (ENSPANG00000017906) #13	EFCAB6 (ENSPANG00000004082) #14	ENSPANG00000050864	MPPED1 (ENSPANG00000032084) #15	SCUBE1 (ENSPANG00000008686) #16	TTLL12 (ENSPANG00000025191) #17	TSPO (ENSPANG00000010770) #18	MCAT (ENSPANG00000009929) #19	BIK (ENSPANG00000009992) #20	TTLL1 (ENSPANG00000008687) #21	ENSPANG00000040410	PACSIN2 (ENSPANG00000007159) #22	ARFGAP3 (ENSPANG00000003890) #23	A4GALT (ENSPANG00000014007) #24	CYB5R3 (ENSPANG00000008688) #25	POLDIP3 (ENSPANG00000007026) #26	ENSPANG00000043435	ENSPANG00000039560 ##27	NFAM1 (ENSPANG00000008689) #29	ENSPANG00000009994 #37	WBP2NL (ENSPANG00000008690) #36	NAGA (ENSPANG00000005137) #35	PHETA2 (ENSPANG00000050664)	SMDT1 (ENSPANG00000034206) #34	NDUFA6 (ENSPANG00000006974) ##33	CYP2D6 (ENSPANG00000024403) #32	CYP2D8P1 (ENSPANG00000032096) #31
Cercopithecinae_d	ANCESTRAL SPECIES	87	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760.b #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00940000167653
Drill	MODERN SPECIES	883	PARVG (ENSMLEG00000043776) #8	PARVB (ENSMLEG00000024750) #9	SAMM50 (ENSMLEG00000037656) #10	PNPLA3 (ENSMLEG00000042479) #11	PNPLA5 (ENSMLEG00000033092) #12	SULT4A1 (ENSMLEG00000038647) #13	ENSMLEG00000025378	EFCAB6 (ENSMLEG00000039456) #14	MPPED1 (ENSMLEG00000027645) #15	SCUBE1 (ENSMLEG00000037502) #16	TTLL12 (ENSMLEG00000037257) #17	TSPO (ENSMLEG00000023717) #18	MCAT (ENSMLEG00000023756) #19	BIK (ENSMLEG00000026148) #20	TTLL1 (ENSMLEG00000038607) #21	PACSIN2 (ENSMLEG00000028842) #22	ARFGAP3 (ENSMLEG00000039798) #23	A4GALT (ENSMLEG00000000493) #24	CYB5R3 (ENSMLEG00000002532) #25	POLDIP3 (ENSMLEG00000041289) #26
Sooty mangabey	MODERN SPECIES	281		PARVG (ENSCATG00000031626) #8	PARVB (ENSCATG00000036559) #9	SAMM50 (ENSCATG00000039799) #10	PNPLA3 (ENSCATG00000032722) #11	PNPLA5 (ENSCATG00000010462) #12	SULT4A1 (ENSCATG00000029864) #13	EFCAB6 (ENSCATG00000032430) #14	MPPED1 (ENSCATG00000003748) #15	SCUBE1 (ENSCATG00000010789) #16	TTLL12 (ENSCATG00000009704) #17	TSPO (ENSCATG00000031138) #18	MCAT (ENSCATG00000031371) #19	BIK (ENSCATG00000029775) #20	TTLL1 (ENSCATG00000037055) #21	PACSIN2 (ENSCATG00000038519) #22	ARFGAP3 (ENSCATG00000036806) #23	A4GALT (ENSCATG00000017012) #24	CYB5R3 (ENSCATG00000004643) #25	POLDIP3 (ENSCATG00000029583) #26	ENSCATG00000033301
Vervet Monkey	MODERN SPECIES	10	SHISAL1 (ENSCSAG00000005409) #7	PARVG (ENSCSAG00000005435) #8	PARVB (ENSCSAG00000005493) #9	SAMM50 (ENSCSAG00000005500) #10	PNPLA3 (ENSCSAG00000005504) #11	PNPLA5 (ENSCSAG00000005513) #12	SULT4A1 (ENSCSAG00000005518) #13	EFCAB6 (ENSCSAG00000005576) #14	ENSCSAG00000005586	SCUBE1 (ENSCSAG00000005602) #16	TTLL12 (ENSCSAG00000005608) #17	TSPO (ENSCSAG00000005612) #18	MCAT (ENSCSAG00000005613) #19	BIK (ENSCSAG00000005618) #20	TTLL1 (ENSCSAG00000005621) #21	PACSIN2 (ENSCSAG00000005625) #22	ARFGAP3 (ENSCSAG00000005636) #23	A4GALT (ENSCSAG00000019285) #24	CYB5R3 (ENSCSAG00000005649) #25	POLDIP3 (ENSCSAG00000005654) #26	RRP7A (ENSCSAG00000005657) #28	ENSCSAG00000005661 #27	ENSCSAG00000005663	NFAM1 (ENSCSAG00000005669) #29	TCF20 (ENSCSAG00000005671) #30	CYP2D8 (ENSCSAG00000005679) #31	CYP2D6 (ENSCSAG00000005692) #32	NDUFA6 (ENSCSAG00000005702) #33	SMDT1 (ENSCSAG00000005706) #34	PHETA2 (ENSCSAG00000019284)	NAGA (ENSCSAG00000005710) #35
Rhinopithecus	ANCESTRAL SPECIES	3	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00940000167653	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331.gb #31	ENSGT00940000153331.fb #32	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Golden snub-nosed monkey	MODERN SPECIES	575	PARVG (ENSRROG00000029292) #8	PARVB (ENSRROG00000039856) #9	SAMM50 (ENSRROG00000040988) #10	PNPLA3 (ENSRROG00000040589) #11	PNPLA5 (ENSRROG00000034756) #12	SULT4A1 (ENSRROG00000044701) #13	EFCAB6 (ENSRROG00000038194) #14	ENSRROG00000042961	MPPED1 (ENSRROG00000028070) #15	SCUBE1 (ENSRROG00000040822) #16	TTLL12 (ENSRROG00000044449) #17	TSPO (ENSRROG00000040546) #18	MCAT (ENSRROG00000041154) #19	BIK (ENSRROG00000038383) #20	TTLL1 (ENSRROG00000034229) #21	PACSIN2 (ENSRROG00000034339) #22	ARFGAP3 (ENSRROG00000040392) #23	A4GALT (ENSRROG00000024966) #24	CYB5R3 (ENSRROG00000034538) #25	ENSRROG00000038126	POLDIP3 (ENSRROG00000022379) #26	RRP7A (ENSRROG00000036754) #28	SERHL2 (ENSRROG00000001711) #27	NFAM1 (ENSRROG00000045753) #29	TCF20 (ENSRROG00000042245) #30	ENSRROG00000032928 #31	ENSRROG00000013355 #32	NDUFA6 (ENSRROG00000031451) #33	SMDT1 (ENSRROG00000036691) #34	NAGA (ENSRROG00000007058) #35	WBP2NL (ENSRROG00000041190) #36
Black snub-nosed monkey	MODERN SPECIES	1489	SHISAL1 (ENSRBIG00000038540) #7	PARVG (ENSRBIG00000044134) #8	PARVB (ENSRBIG00000007441) #9	SAMM50 (ENSRBIG00000017151) #10	PNPLA3 (ENSRBIG00000032758) #11	PNPLA5 (ENSRBIG00000044042) #12	SULT4A1 (ENSRBIG00000043637) #13	EFCAB6 (ENSRBIG00000037752) #14	MPPED1 (ENSRBIG00000034192) #15	SCUBE1 (ENSRBIG00000018006) #16	TTLL12 (ENSRBIG00000042927) #17	TSPO (ENSRBIG00000044885) #18	MCAT (ENSRBIG00000034334) #19	BIK (ENSRBIG00000040540) #20	TTLL1 (ENSRBIG00000035980) #21	PACSIN2 (ENSRBIG00000000753) #22	ARFGAP3 (ENSRBIG00000043710) #23	A4GALT (ENSRBIG00000020136) #24
Hominoidea	ANCESTRAL SPECIES	22	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331.eb.a #32	ENSGT00940000153331.eb.b #32	ENSGT00940000153331.db #32	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35
Hominidae	ANCESTRAL SPECIES	21	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331.eb.a #32	ENSGT00940000153331.eb.b #32	ENSGT00940000153331.db #32	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	21	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331.eb.a #32	ENSGT00940000153331.db #32	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Gorilla	MODERN SPECIES	13	SHISAL1 (ENSGGOG00000013635) #7	PARVG (ENSGGOG00000016486) #8	PARVB (ENSGGOG00000008719) #9	SAMM50 (ENSGGOG00000036849) #10	PNPLA3 (ENSGGOG00000005225) #11	PNPLA5 (ENSGGOG00000024230) #12	SULT4A1 (ENSGGOG00000007339) #13	EFCAB6 (ENSGGOG00000015468) #14	MPPED1 (ENSGGOG00000043344) #15	SCUBE1 (ENSGGOG00000005201) #16	TTLL12 (ENSGGOG00000010316) #17	TSPO (ENSGGOG00000010307) #18	MCAT (ENSGGOG00000000030) #19	BIK (ENSGGOG00000000029) #20	TTLL1 (ENSGGOG00000001849) #21	PACSIN2 (ENSGGOG00000016309) #22	ARFGAP3 (ENSGGOG00000014512) #23	A4GALT (ENSGGOG00000009352) #24	CYB5R3 (ENSGGOG00000005448) #25	POLDIP3 (ENSGGOG00000014961) #26	ENSGGOG00000021985 #27	RRP7A (ENSGGOG00000014957) #28	NFAM1 (ENSGGOG00000042468) #29	TCF20 (ENSGGOG00000000461) #30	ENSGGOG00000000459 #32	ENSGGOG00000005816	NDUFA6 (ENSGGOG00000007905) #33	SMDT1 (ENSGGOG00000007903) #34	PHETA2 (ENSGGOG00000037366)	NAGA (ENSGGOG00000007889) #35	WBP2NL (ENSGGOG00000034969) #36
Homo/Pan group	ANCESTRAL SPECIES	20	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331.eb.a #32	ENSGT00940000153331.db #32	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Pan	ANCESTRAL SPECIES	23	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331.eb.a #32	ENSGT00390000000673.b.a.b	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Chimpanzee	MODERN SPECIES	13	PARVG (ENSPTRG00000014484) #8	PARVB (ENSPTRG00000014480) #9	SAMM50 (ENSPTRG00000014483) #10	PNPLA3 (ENSPTRG00000014481) #11	PNPLA5 (ENSPTRG00000014478) #12	SULT4A1 (ENSPTRG00000014477) #13	EFCAB6 (ENSPTRG00000014475) #14	ENSPTRG00000051050	ENSPTRG00000048449 #15	SCUBE1 (ENSPTRG00000044714) #16	TTLL12 (ENSPTRG00000014470) #17	TSPO (ENSPTRG00000014469) #18	MCAT (ENSPTRG00000014468) #19	BIK (ENSPTRG00000014467) #20	TTLL1 (ENSPTRG00000014466) #21	PACSIN2 (ENSPTRG00000014465) #22	ARFGAP3 (ENSPTRG00000051085) #23	ENSPTRG00000045246	A4GALT (ENSPTRG00000029414) #24	CYB5R3 (ENSPTRG00000014461) #25	POLDIP3 (ENSPTRG00000014460) #26	ENSPTRG00000014456 #27	ENSPTRG00000033935 #28	ENSPTRG00000047863	NFAM1 (ENSPTRG00000043593) #29	TCF20 (ENSPTRG00000014452) #30	ENSPTRG00000051591 #32	CYP2D6 (ENSPTRG00000042031) #32	ENSPTRG00000048207	NDUFA6 (ENSPTRG00000014449) #33	SMDT1 (ENSPTRG00000014448) #34
Bonobo	MODERN SPECIES	13	PARVG (ENSPPAG00000035474) #8	ENSPPAG00000032983	PARVB (ENSPPAG00000031463) #9	SAMM50 (ENSPPAG00000029169) #10	PNPLA3 (ENSPPAG00000028654) #11	PNPLA5 (ENSPPAG00000027928) #12	SULT4A1 (ENSPPAG00000011850) #13	EFCAB6 (ENSPPAG00000041490) #14	MPPED1 (ENSPPAG00000025568) #15	SCUBE1 (ENSPPAG00000043522) #16	TTLL12 (ENSPPAG00000036439) #17	TSPO (ENSPPAG00000013888) #18	MCAT (ENSPPAG00000039856) #19	BIK (ENSPPAG00000028049) #20	TTLL1 (ENSPPAG00000039915) #21	PACSIN2 (ENSPPAG00000036909) #22	ARFGAP3 (ENSPPAG00000039620) #23	ENSPPAG00000040595	A4GALT (ENSPPAG00000007549) #24	CYB5R3 (ENSPPAG00000033956) #25	POLDIP3 (ENSPPAG00000036619) #26	ENSPPAG00000029825 #28	SERHL2 (ENSPPAG00000037657) #27	NFAM1 (ENSPPAG00000022085) #29	TCF20 (ENSPPAG00000032271) #30	ENSPPAG00000036828 #32	ENSPPAG00000037463	NDUFA6 (ENSPPAG00000037220) #33	SMDT1 (ENSPPAG00000036299) #34	PHETA2 (ENSPPAG00000000902)	NAGA (ENSPPAG00000034278) #35
Human	MODERN SPECIES	14	SHISAL1 (ENSG00000138944) #7	PARVG (ENSG00000138964) #8	PARVB (ENSG00000188677) #9	SAMM50 (ENSG00000100347) #10	PNPLA3 (ENSG00000100344) #11	PNPLA5 (ENSG00000100341) #12	SULT4A1 (ENSG00000130540) #13	EFCAB6 (ENSG00000186976) #14	MPPED1 (ENSG00000186732) #15	SCUBE1 (ENSG00000159307) #16	TTLL12 (ENSG00000100304) #17	TSPO (ENSG00000100300) #18	MCAT (ENSG00000100294) #19	BIK (ENSG00000100290) #20	TTLL1 (ENSG00000100271) #21	PACSIN2 (ENSG00000100266) #22	ARFGAP3 (ENSG00000242247) #23	A4GALT (ENSG00000128274) #24	ATP5MGL (ENSG00000249222)	CYB5R3 (ENSG00000100243) #25	POLDIP3 (ENSG00000100227) #26	SERHL2 (ENSG00000183569) #27	RRP7A (ENSG00000189306) #28	NFAM1 (ENSG00000235568) #29	TCF20 (ENSG00000100207) #30	CYP2D6 (ENSG00000100197) #32	NDUFA6 (ENSG00000184983) #33	SMDT1 (ENSG00000183172) #34	PHETA2 (ENSG00000177096)	NAGA (ENSG00000198951) #35	WBP2NL (ENSG00000183066) #36
Orangutan	MODERN SPECIES	13	PARVG (ENSPPYG00000011920) #8	PARVB (ENSPPYG00000029990) #9	SAMM50 (ENSPPYG00000011918) #10	PNPLA3 (ENSPPYG00000029633) #11	PNPLA5 (ENSPPYG00000011917) #12	SULT4A1 (ENSPPYG00000011916) #13	EFCAB6 (ENSPPYG00000011914) #14	MPPED1 (ENSPPYG00000011913) #15	SCUBE1 (ENSPPYG00000011912) #16	TTLL12 (ENSPPYG00000011910) #17	TSPO (ENSPPYG00000011909) #18	MCAT (ENSPPYG00000011908) #19	BIK (ENSPPYG00000011907) #20	ENSPPYG00000011905 #21	ENSPPYG00000040321	PACSIN2 (ENSPPYG00000011904) #22	ARFGAP3 (ENSPPYG00000011903) #23	ENSPPYG00000011902	A4GALT (ENSPPYG00000011901) #24	CYB5R3 (ENSPPYG00000011900) #25	POLDIP3 (ENSPPYG00000011899) #26	ENSPPYG00000032295 #28	ENSPPYG00000011898 #27	RRP7A (ENSPPYG00000011897) #28	SERHL2 (ENSPPYG00000011896) #27	NFAM1 (ENSPPYG00000011895) #29	TCF20 (ENSPPYG00000011894) #30	ENSPPYG00000035323 #32	ENSPPYG00000011892 #32	CYP2D6 (ENSPPYG00000011893) #32	NDUFA6 (ENSPPYG00000011891) #33
Gibbon	MODERN SPECIES	22	ENSNLEG00000015877 #8	PARVB (ENSNLEG00000015803) #9	SAMM50 (ENSNLEG00000015693) #10	PNPLA3 (ENSNLEG00000015680) #11	PNPLA5 (ENSNLEG00000015654) #12	SULT4A1 (ENSNLEG00000015626) #13	EFCAB6 (ENSNLEG00000015528) #14	ENSNLEG00000016143 #15	SCUBE1 (ENSNLEG00000016115) #16	TTLL12 (ENSNLEG00000016110) #17	TSPO (ENSNLEG00000016104) #18	MCAT (ENSNLEG00000032147) #19	BIK (ENSNLEG00000016086) #20	ENSNLEG00000027947	TTLL1 (ENSNLEG00000016080) #21	PACSIN2 (ENSNLEG00000016046) #22	ARFGAP3 (ENSNLEG00000016018) #23	ENSNLEG00000032590 #25	POLDIP3 (ENSNLEG00000015950) #26	RRP7A (ENSNLEG00000036258) #28	ENSNLEG00000015900 #27	NFAM1 (ENSNLEG00000015893) #29	ENSNLEG00000031275 #30	ENSNLEG00000034081 #32	ENSNLEG00000035080 #32	CYP2D6 (ENSNLEG00000015828) #32	ENSNLEG00000015824	NDUFA6 (ENSNLEG00000015817) #33	SMDT1 (ENSNLEG00000015811) #34	PHETA2 (ENSNLEG00000015809)	NAGA (ENSNLEG00000015762) #35
Platyrrhini	ANCESTRAL SPECIES	30	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A.c.a #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331.ib #32	ENSGT00940000153331.hb #32	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Mas night monkey	MODERN SPECIES	1295																PACSIN2 (ENSANAG00000027586) #22
Cebidae	ANCESTRAL SPECIES	31	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A.c.a #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331.ib #32	ENSGT00940000153331.hb #32	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Marmoset	MODERN SPECIES		PARVB (ENSCJAG00000015066) #9	SAMM50 (ENSCJAG00000015070) #10	PNPLA3 (ENSCJAG00000015142) #11	PNPLA5 (ENSCJAG00000015166) #12	SULT4A1 (ENSCJAG00000015192) #13	EFCAB6 (ENSCJAG00000015219) #14	MPPED1 (ENSCJAG00000001643) #15	SCUBE1 (ENSCJAG00000001645) #16	TTLL12 (ENSCJAG00000001674) #17	TSPO (ENSCJAG00000052262) #18	MCAT (ENSCJAG00000001717) #19	BIK (ENSCJAG00000001723) #20	ENSCJAG00000082521	ENSCJAG00000080026	TTLL1 (ENSCJAG00000009758) #21	PACSIN2 (ENSCJAG00000009771) #22	ARFGAP3 (ENSCJAG00000009816) #23	A4GALT (ENSCJAG00000022137) #24	CYB5R3 (ENSCJAG00000009596) #25	POLDIP3 (ENSCJAG00000009628) #26	RRP7A (ENSCJAG00000009668) #28	SERHL2 (ENSCJAG00000081818) #27	ENSCJAG00000084345	ENSCJAG00000006644 #29	TCF20 (ENSCJAG00000002308) #30	ENSCJAG00000037046 #32	CYP2D19 (ENSCJAG00000002321) #32	ENSCJAG00000033546	NDUFA6 (ENSCJAG00000074627) #33	SMDT1 (ENSCJAG00000002333) #34	PHETA2 (ENSCJAG00000002334)
Cebidae_a	ANCESTRAL SPECIES	70	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629.c #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22
Capuchin	MODERN SPECIES	706								ENSCCAG00000027808 #14	MPPED1 (ENSCCAG00000020370) #15	SCUBE1 (ENSCCAG00000024814) #16	TTLL12 (ENSCCAG00000023414) #17	TSPO (ENSCCAG00000026311) #18	MCAT (ENSCCAG00000025649) #19	BIK (ENSCCAG00000028214) #20	TTLL1 (ENSCCAG00000023456) #21	PACSIN2 (ENSCCAG00000027443) #22
Bolivian squirrel monkey	MODERN SPECIES	94	PRR5 (ENSSBOG00000035219)	SHISAL1 (ENSSBOG00000021592) #7	PARVG (ENSSBOG00000030416) #8	PARVB (ENSSBOG00000034920) #9	SAMM50 (ENSSBOG00000027317) #10	PNPLA3 (ENSSBOG00000035976) #11	PNPLA5 (ENSSBOG00000021754) #12	SULT4A1 (ENSSBOG00000021584) #13	EFCAB6 (ENSSBOG00000034619) #14	MPPED1 (ENSSBOG00000035120) #15	SCUBE1 (ENSSBOG00000031893) #16	TTLL12 (ENSSBOG00000030110) #17	MCAT (ENSSBOG00000029589) #19	BIK (ENSSBOG00000025149) #20	TTLL1 (ENSSBOG00000017814) #21	PACSIN2 (ENSSBOG00000019351) #22
Tarsier	MODERN SPECIES	5372										SCUBE1 (ENSTSYG00000002999) #16	TTLL12 (ENSTSYG00000007908) #17	TSPO (ENSTSYG00000036968) #18	MCAT (ENSTSYG00000000434) #19	BIK (ENSTSYG00000036547) #20	TTLL1 (ENSTSYG00000014407) #21	PACSIN2 (ENSTSYG00000002510) #22	ENSTSYG00000033218	ARFGAP3 (ENSTSYG00000010937) #23
Strepsirrhini	ANCESTRAL SPECIES	3	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36	ENSGT00940000158004 #37
Bushbaby	MODERN SPECIES	122	SHISAL1 (ENSOGAG00000005699) #7	PARVG (ENSOGAG00000005941) #8	PARVB (ENSOGAG00000005939) #9	SAMM50 (ENSOGAG00000005934) #10	PNPLA3 (ENSOGAG00000005931) #11	PNPLA5 (ENSOGAG00000005929) #12	SULT4A1 (ENSOGAG00000005926) #13	EFCAB6 (ENSOGAG00000001818) #14	MPPED1 (ENSOGAG00000025523) #15	SCUBE1 (ENSOGAG00000001810) #16	TTLL12 (ENSOGAG00000001807) #17	TSPO (ENSOGAG00000001805) #18	MCAT (ENSOGAG00000014060) #19	BIK (ENSOGAG00000014058) #20	TTLL1 (ENSOGAG00000009533) #21	PACSIN2 (ENSOGAG00000008741) #22	ARFGAP3 (ENSOGAG00000009680) #23	A4GALT (ENSOGAG00000008074) #24	CYB5R3 (ENSOGAG00000002062) #25	POLDIP3 (ENSOGAG00000008216) #26	RRP7A (ENSOGAG00000002857) #28	SERHL2 (ENSOGAG00000002855) #27	NFAM1 (ENSOGAG00000024346) #29	TCF20 (ENSOGAG00000034778) #30	CYP2D6 (ENSOGAG00000004761) #32	NDUFA6 (ENSOGAG00000014762) #33	SMDT1 (ENSOGAG00000014760) #34	PHETA2 (ENSOGAG00000025089)	NAGA (ENSOGAG00000016281) #35	ENSOGAG00000014752 #37	CENPM (ENSOGAG00000014744)
Lemuriformes	ANCESTRAL SPECIES	1	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00390000018898.w #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36	ENSGT00940000158004 #37
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES	29	ARHGAP8 (ENSMICG00000008439)	PRR5 (ENSMICG00000044670)	RTL6 (ENSMICG00000031689)	SHISAL1 (ENSMICG00000008501) #7	PARVG (ENSMICG00000008490) #8	PARVB (ENSMICG00000014924) #9	SAMM50 (ENSMICG00000046175) #10	PNPLA3 (ENSMICG00000034414) #11	ENSMICG00000041774	SULT4A1 (ENSMICG00000009212) #13	EFCAB6 (ENSMICG00000007847) #14	MPPED1 (ENSMICG00000005477) #15	SCUBE1 (ENSMICG00000013606) #16	TTLL1 (ENSMICG00000034722) #21	ENSMICG00000044467	ENSMICG00000012990 #22	ARFGAP3 (ENSMICG00000006141) #23	A4GALT (ENSMICG00000044263) #24	BIK (ENSMICG00000043006) #20	MCAT (ENSMICG00000015473) #19	TSPO (ENSMICG00000003660) #18	TTLL12 (ENSMICG00000013571) #17	CYB5R3 (ENSMICG00000006571) #25	POLDIP3 (ENSMICG00000041767) #26	RRP7A (ENSMICG00000041800) #28	SERHL2 (ENSMICG00000000839) #27	NFAM1 (ENSMICG00000047110) #29	TCF20 (ENSMICG00000012650) #30	CYP2D8 (ENSMICG00000027310) #32	CYP2D93 (ENSMICG00000047495) #32	ENSMICG00000044058 #32
Mouse lemur	MODERN SPECIES	5	TFAP2A (ENSMICG00000032580)	GCNT2 (ENSMICG00000011369)	C6orf52 (ENSMICG00000028261)	PAK1IP1 (ENSMICG00000004453)	ENSMICG00000043342	ENSMICG00000004469	ENSMICG00000000815	TRIM27 (ENSMICG00000000738)	ENSMICG00000044161	SCAND3 (ENSMICG00000014561)	ENSMICG00000014550	ENSMICG00000028245	GPX6 (ENSMICG00000014539)	ZSCAN23 (ENSMICG00000010510)	ENSMICG00000010501	ENSMICG00000036255 #22	ZKSCAN3 (ENSMICG00000010491)	ENSMICG00000027658	ZSCAN26 (ENSMICG00000010471)	PGBD1 (ENSMICG00000034507)	ENSMICG00000010462	ZSCAN9 (ENSMICG00000010443)	ENSMICG00000041603	ZKSCAN8 (ENSMICG00000009423)	ZSCAN16 (ENSMICG00000029324)	ZNF165 (ENSMICG00000035192)	ENSMICG00000028046	ENSMICG00000044839	ENSMICG00000041609	ENSMICG00000047655	H3C11 (ENSMICG00000046406)
Lemuriformes_a	ANCESTRAL SPECIES	38				ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00390000018898.w #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36	ENSGT00940000158004 #37
Greater bamboo lemur	MODERN SPECIES	342							SULT4A1 (ENSPSMG00000011556) #13	EFCAB6 (ENSPSMG00000011592) #14	MPPED1 (ENSPSMG00000011602) #15	SCUBE1 (ENSPSMG00000011674) #16	TTLL12 (ENSPSMG00000011714) #17	TSPO (ENSPSMG00000011745) #18	MCAT (ENSPSMG00000011761) #19	ENSPSMG00000011766 #20	TTLL1 (ENSPSMG00000011795) #21	PACSIN2 (ENSPSMG00000011904) #22	ARFGAP3 (ENSPSMG00000012075) #23	A4GALT (ENSPSMG00000012096) #24
Coquerels sifaka	MODERN SPECIES	131								ENSPCOG00000017470 #14	MPPED1 (ENSPCOG00000028764) #15	SCUBE1 (ENSPCOG00000015764) #16	TTLL12 (ENSPCOG00000017269) #17	TSPO (ENSPCOG00000018946) #18	ENSPCOG00000001221	BIK (ENSPCOG00000019271) #20	TTLL1 (ENSPCOG00000019799) #21	PACSIN2 (ENSPCOG00000024814) #22	ENSPCOG00000013651	ARFGAP3 (ENSPCOG00000028873) #23	CYB5R3 (ENSPCOG00000020961) #25	POLDIP3 (ENSPCOG00000020271) #26	RRP7A (ENSPCOG00000014018) #28	SERHL2 (ENSPCOG00000020237) #27	NFAM1 (ENSPCOG00000018178) #29	TCF20 (ENSPCOG00000022152) #30	ENSPCOG00000028795 #32	ENSPCOG00000028700 #33	SMDT1 (ENSPCOG00000028742) #34	NAGA (ENSPCOG00000028087) #35	ENSPCOG00000012300 #36	ENSPCOG00000024794 #37	SMIM45 (ENSPCOG00000003245)
Euarchontoglires_A	ANCESTRAL SPECIES	5	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Tree shrew	MODERN SPECIES	5936																PACSIN2 (ENSTBEG00000013253) #22
Glires	ANCESTRAL SPECIES	4	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Rodentia	ANCESTRAL SPECIES	5	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Rodentia_B	ANCESTRAL SPECIES	3	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36	ENSGT00940000158004 #37
Myomorpha	ANCESTRAL SPECIES	2	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331.y.b #32	ENSGT00940000153331.y.a #32	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Muroidea	ANCESTRAL SPECIES	5	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331.y.b.b #32	ENSGT00940000153331.y.b.a.a #32	ENSGT00940000153331.y.b.a.b #32	ENSGT00940000153331.y.a #32	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686
Muroidea_A	ANCESTRAL SPECIES	9	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331.y.b.a.a #32	ENSGT00940000153331.y.b.b #32	ENSGT00940000153331.y.b.a.b #32	ENSGT00940000153331.y.a #32	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686
Cricetidae	ANCESTRAL SPECIES	10	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896.h #30	ENSGT00940000153331.y.b.b #32	ENSGT00940000153331.y.b.a.a #32	ENSGT00940000153331.y.b.a.b #32	ENSGT00940000153331.y.a #32	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686
Cricetinae	ANCESTRAL SPECIES	3	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896.h #30	ENSGT00940000153331.y.b.b #32	ENSGT00940000153331.y.a #32	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Chinese hamster chok1gshd	MODERN SPECIES	1	Parvg (ENSCGRG00001020780) #8	Parvb (ENSCGRG00001020564) #9	ENSCGRG00001020966	Samm50 (ENSCGRG00001020546) #10	Pnpla3 (ENSCGRG00001023026) #11	Pnpla5 (ENSCGRG00001003411) #12	Sult4a1 (ENSCGRG00001022132) #13	Efcab6 (ENSCGRG00001023590) #14	Mpped1 (ENSCGRG00001023154) #15	Scube1 (ENSCGRG00001022393) #16	Ttll12 (ENSCGRG00001020693) #17	Tspo (ENSCGRG00001020463) #18	Mcat (ENSCGRG00001021409) #19	Bik (ENSCGRG00001021137) #20	Ttll1 (ENSCGRG00001020591) #21	Pacsin2 (ENSCGRG00001020366) #22	Arfgap3 (ENSCGRG00001022527) #23	A4galt (ENSCGRG00001010449) #24	Cyb5r3 (ENSCGRG00001002853) #25	ENSCGRG00001004211 #26	ENSCGRG00001021873 #28	Serhl (ENSCGRG00001021008) #27	Nfam1 (ENSCGRG00001021390) #29	ENSCGRG00001021131 #30	ENSCGRG00001020758 #32	ENSCGRG00001020509 #32	ENSCGRG00001020807 #32	ENSCGRG00001020612 #32	Cyp2d22 (ENSCGRG00001021750) #32	Ndufa6 (ENSCGRG00001021387) #33	Smdt1 (ENSCGRG00001008476) #34
Golden Hamster	MODERN SPECIES	626	Shisal1 (ENSMAUG00000020671) #7	Parvg (ENSMAUG00000022195) #8	Parvb (ENSMAUG00000018794) #9	Samm50 (ENSMAUG00000019203) #10	Pnpla3 (ENSMAUG00000004304) #11	Pnpla5 (ENSMAUG00000017738) #12	Sult4a1 (ENSMAUG00000020511) #13	Efcab6 (ENSMAUG00000016708) #14	Mpped1 (ENSMAUG00000015435) #15	ENSMAUG00000014861 #16	ENSMAUG00000020344	Tspo (ENSMAUG00000022011) #18	Mcat (ENSMAUG00000001870) #19	Bik (ENSMAUG00000019844) #20	Ttll1 (ENSMAUG00000006755) #21	Pacsin2 (ENSMAUG00000018738) #22	Arfgap3 (ENSMAUG00000017439) #23	A4galt (ENSMAUG00000020066) #24	Cyb5r3 (ENSMAUG00000018937) #25	Poldip3 (ENSMAUG00000014002) #26	ENSMAUG00000019905 #28	Nfam1 (ENSMAUG00000021430) #29	ENSMAUG00000016173 #30	Smdt1 (ENSMAUG00000013006) #34	Pheta2 (ENSMAUG00000012084)	ENSMAUG00000021300 #35	Wbp2nl (ENSMAUG00000021409) #36	ENSMAUG00000014933 #37	Smim45 (ENSMAUG00000010423)	Cenpm (ENSMAUG00000013641)	Tnfrsf13c (ENSMAUG00000021132)
Cricetidae_B	ANCESTRAL SPECIES	6	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896.h #30	ENSGT00940000153331.y.b.b #32	ENSGT00940000153331.y.b.a.a #32	ENSGT00940000153331.y.b.a.b #32	ENSGT00940000153331.y.a #32	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686
Prairie vole	MODERN SPECIES	2	Shisal1 (ENSMOCG00000001832) #7	Parvg (ENSMOCG00000018338) #8	Parvb (ENSMOCG00000022443) #9	Samm50 (ENSMOCG00000009596) #10	Pnpla3 (ENSMOCG00000020770) #11	Pnpla5 (ENSMOCG00000012819) #12	Sult4a1 (ENSMOCG00000021180) #13	Efcab6 (ENSMOCG00000003964) #14	Mpped1 (ENSMOCG00000018115) #15	Scube1 (ENSMOCG00000002809) #16	Ttll12 (ENSMOCG00000013400) #17	Tspo (ENSMOCG00000000457) #18	Mcat (ENSMOCG00000001331) #19	Bik (ENSMOCG00000001896) #20	Ttll1 (ENSMOCG00000009806) #21	Pacsin2 (ENSMOCG00000013530) #22	Arfgap3 (ENSMOCG00000017076) #23	A4galt (ENSMOCG00000001881) #24	Cyb5r3 (ENSMOCG00000007336) #25	Poldip3 (ENSMOCG00000014101) #26	Nfam1 (ENSMOCG00000015515) #29	ENSMOCG00000019326 #30	ENSMOCG00000001543 #32	ENSMOCG00000003545 #32	Cyp2d40 (ENSMOCG00000019528) #32	ENSMOCG00000015222 #32	ENSMOCG00000011450 #32	Cyp2d22 (ENSMOCG00000012735) #32	Ndufa6 (ENSMOCG00000014629) #33	Smdt1 (ENSMOCG00000017726) #34	Pheta2 (ENSMOCG00000006143)
Northern American deer mouse	MODERN SPECIES	12	Samm50 (ENSPEMG00000021164) #10	Pnpla3 (ENSPEMG00000021087) #11	Pnpla5 (ENSPEMG00000020991) #12	ENSPEMG00000022556 #13	Efcab6 (ENSPEMG00000021803) #14	Mpped1 (ENSPEMG00000021045) #15	ENSPEMG00000020858	Scube1 (ENSPEMG00000012750) #16	Ttll12 (ENSPEMG00000021052) #17	Tspo (ENSPEMG00000020791) #18	Mcat (ENSPEMG00000020839) #19	ENSPEMG00000020645 #20	ENSPEMG00000028833 #20	ENSPEMG00000027753	Ttll1 (ENSPEMG00000021844) #21	Pacsin2 (ENSPEMG00000008083) #22	Arfgap3 (ENSPEMG00000021159) #23	A4galt (ENSPEMG00000021237) #24	Cyb5r3 (ENSPEMG00000020740) #25	Poldip3 (ENSPEMG00000021065) #26	Rrp7a (ENSPEMG00000022265) #28	Serhl (ENSPEMG00000030338) #27	Nfam1 (ENSPEMG00000021252) #29	ENSPEMG00000020573 #30	ENSPEMG00000029535 #32	ENSPEMG00000029803 #32	ENSPEMG00000027063 #32	ENSPEMG00000029885 #32	ENSPEMG00000029293 #32	ENSPEMG00000030889 #32	ENSPEMG00000030236 #32
Murinae	ANCESTRAL SPECIES	10	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331.y.b.a.a #32	ENSGT00940000153331.y.b.b #32	ENSGT00940000153331.y.b.a.b #32	ENSGT00940000153331.y.a #32	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686
Mus	ANCESTRAL SPECIES	11	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896.e #30	ENSGT00940000153331.y.b.a.a.a.a #32	ENSGT00940000153331.y.b.a.b.b #32	ENSGT00940000153331.y.b.b #32	ENSGT00940000153331.z #32	ENSGT00940000153331.y.a #32	ENSGT00940000153331.y.b.a.b.a.b #32	ENSGT00940000153331.y.b.a.b.a.a #32
Mus_A	ANCESTRAL SPECIES	13	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896.e #30	ENSGT00940000153331.y.b.a.a.a.a #32	ENSGT00940000153331.y.b.a.b.b #32	ENSGT00940000153331.y.b.b #32	ENSGT00940000153331.z #32	ENSGT00940000153331.y.b.a.b.a.b #32	ENSGT00940000153331.y.b.a.b.a.a.b #32	ENSGT00940000153331.y.b.a.b.a.a.a #32
Ryukyu mouse	MODERN SPECIES	6	Shisal1 (MGP_CAROLIEiJ_G0020113) #7	Parvg (MGP_CAROLIEiJ_G0020112) #8	Parvb (MGP_CAROLIEiJ_G0020111) #9	Samm50 (MGP_CAROLIEiJ_G0020110) #10	Pnpla3 (MGP_CAROLIEiJ_G0020109) #11	Pnpla5 (MGP_CAROLIEiJ_G0020108) #12	Sult4a1 (MGP_CAROLIEiJ_G0020107) #13	Efcab6 (MGP_CAROLIEiJ_G0020106) #14	Mpped1 (MGP_CAROLIEiJ_G0020105) #15	Scube1 (MGP_CAROLIEiJ_G0020104) #16	Ttll12 (MGP_CAROLIEiJ_G0020103) #17	Tspo (MGP_CAROLIEiJ_G0020102) #18	Mcat (MGP_CAROLIEiJ_G0020101) #19	MGP_CAROLIEiJ_G0020100 #20	Ttll1 (MGP_CAROLIEiJ_G0020099) #21	Pacsin2 (MGP_CAROLIEiJ_G0020098) #22	MGP_CAROLIEiJ_G0020097	Arfgap3 (MGP_CAROLIEiJ_G0020096) #23	A4galt (MGP_CAROLIEiJ_G0020095) #24	MGP_CAROLIEiJ_G0020094 #25	Poldip3 (MGP_CAROLIEiJ_G0020093) #26	Rrp7a (MGP_CAROLIEiJ_G0020092) #28	Serhl (MGP_CAROLIEiJ_G0020091) #27	Nfam1 (MGP_CAROLIEiJ_G0020090) #29	Tcf20 (MGP_CAROLIEiJ_G0020089) #30	MGP_CAROLIEiJ_G0020088 #32	MGP_CAROLIEiJ_G0020087 #32	MGP_CAROLIEiJ_G0020086 #32	Cyp2d11 (MGP_CAROLIEiJ_G0020085) #32	Cyp2d22 (MGP_CAROLIEiJ_G0020084) #32	Ndufa6 (MGP_CAROLIEiJ_G0020083) #33
Mus_B	ANCESTRAL SPECIES	12	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896.e #30	ENSGT00940000153331.y.b.a.a.a.a #32	ENSGT00940000153331.y.b.a.b.b #32	ENSGT00940000153331.y.b.b #32	ENSGT00940000153331.z #32	ENSGT00940000153331.y.b.a.b.a.b.a #32	ENSGT00940000153331.y.b.a.b.a.a.b.a.b #32	ENSGT00940000153331.y.b.a.b.a.a.a #32
Mouse	MODERN SPECIES	6	Shisal1 (ENSMUSG00000062760) #7	Parvg (ENSMUSG00000022439) #8	Parvb (ENSMUSG00000022438) #9	Samm50 (ENSMUSG00000022437) #10	Pnpla3 (ENSMUSG00000041653) #11	Pnpla5 (ENSMUSG00000018868) #12	Sult4a1 (ENSMUSG00000018865) #13	Efcab6 (ENSMUSG00000022441) #14	Mpped1 (ENSMUSG00000041708) #15	Scube1 (ENSMUSG00000016763) #16	Ttll12 (ENSMUSG00000016757) #17	Tspo (ENSMUSG00000041736) #18	Mcat (ENSMUSG00000048755) #19	Bik (ENSMUSG00000016758) #20	Ttll1 (ENSMUSG00000022442) #21	Pacsin2 (ENSMUSG00000016664) #22	Arfgap3 (ENSMUSG00000054277) #23	A4galt (ENSMUSG00000047878) #24	Cyb5r3 (ENSMUSG00000018042) #25	Poldip3 (ENSMUSG00000041815) #26	Rrp7a (ENSMUSG00000018040) #28	Serhl (ENSMUSG00000058586) #27	Nfam1 (ENSMUSG00000058099) #29	Tcf20 (ENSMUSG00000041852) #30	Cyp2d26 (ENSMUSG00000022445) #32	Cyp2d40 (ENSMUSG00000068083) #32	Cyp2d13 (ENSMUSG00000118516) #32	Cyp2d34 (ENSMUSG00000094559) #32	Cyp2d12 (ENSMUSG00000096852) #32	Cyp2d9 (ENSMUSG00000068086) #32	Cyp2d10 (ENSMUSG00000094806) #32
Mus_C	ANCESTRAL SPECIES	17	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896.e #30	ENSGT00940000153331.y.b.a.a.a.a #32	ENSGT00940000153331.y.b.b #32	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
spretus	MODERN SPECIES	6	Shisal1 (MGP_SPRETEiJ_G0021010) #7	Parvg (MGP_SPRETEiJ_G0021009) #8	Parvb (MGP_SPRETEiJ_G0021008) #9	Samm50 (MGP_SPRETEiJ_G0021007) #10	Pnpla3 (MGP_SPRETEiJ_G0021006) #11	Pnpla5 (MGP_SPRETEiJ_G0021005) #12	Sult4a1 (MGP_SPRETEiJ_G0021004) #13	Efcab6 (MGP_SPRETEiJ_G0021003) #14	Mpped1 (MGP_SPRETEiJ_G0021002) #15	Scube1 (MGP_SPRETEiJ_G0021001) #16	Ttll12 (MGP_SPRETEiJ_G0021000) #17	Tspo (MGP_SPRETEiJ_G0020999) #18	Mcat (MGP_SPRETEiJ_G0020998) #19	Bik (MGP_SPRETEiJ_G0020997) #20	Ttll1 (MGP_SPRETEiJ_G0020996) #21	Pacsin2 (MGP_SPRETEiJ_G0020995) #22	Arfgap3 (MGP_SPRETEiJ_G0020994) #23	A4galt (MGP_SPRETEiJ_G0020993) #24	Cyb5r3 (MGP_SPRETEiJ_G0020992) #25	Poldip3 (MGP_SPRETEiJ_G0020991) #26	Rrp7a (MGP_SPRETEiJ_G0020990) #28	Serhl (MGP_SPRETEiJ_G0020989) #27	Nfam1 (MGP_SPRETEiJ_G0020988) #29	Tcf20 (MGP_SPRETEiJ_G0020987) #30	MGP_SPRETEiJ_G0020986 #32	Cyp2d26 (MGP_SPRETEiJ_G0020985) #32	Cyp2d22 (MGP_SPRETEiJ_G0020984) #32	Ndufa6 (MGP_SPRETEiJ_G0020983) #33	Smdt1 (MGP_SPRETEiJ_G0020982) #34	Pheta2 (MGP_SPRETEiJ_G0020981)	Naga (MGP_SPRETEiJ_G0020980) #35
Steppe mouse	MODERN SPECIES	3375	Shisal1 (ENSMSIG00000018310) #7	Parvg (ENSMSIG00000018240) #8	Parvb (ENSMSIG00000018208) #9	Samm50 (ENSMSIG00000018181) #10	Pnpla3 (ENSMSIG00000018162) #11	Pnpla5 (ENSMSIG00000018110) #12	Sult4a1 (ENSMSIG00000018043) #13	Efcab6 (ENSMSIG00000017906) #14	Mpped1 (ENSMSIG00000017870) #15	Scube1 (ENSMSIG00000017647) #16	Ttll12 (ENSMSIG00000017603) #17	Tspo (ENSMSIG00000017574) #18	Mcat (ENSMSIG00000017549) #19	Bik (ENSMSIG00000017503) #20	Ttll1 (ENSMSIG00000017485) #21	Pacsin2 (ENSMSIG00000017290) #22	Arfgap3 (ENSMSIG00000017189) #23	A4galt (ENSMSIG00000017180) #24	Cyb5r3 (ENSMSIG00000017092) #25	Poldip3 (ENSMSIG00000017028) #26	Rrp7a (ENSMSIG00000017010) #28	Serhl (ENSMSIG00000016951) #27	Nfam1 (ENSMSIG00000016901) #29	Tcf20 (ENSMSIG00000016858) #30	Cyp2d40 (ENSMSIG00000016818) #32	Cyp2d26 (ENSMSIG00000016753) #32	ENSMSIG00000016748 #32	Cyp2d9 (ENSMSIG00000016551) #32
Shrew mouse	MODERN SPECIES	8	Shisal1 (MGP_PahariEiJ_G0020119) #7	Parvg (MGP_PahariEiJ_G0020118) #8	Parvb (MGP_PahariEiJ_G0020117) #9	Samm50 (MGP_PahariEiJ_G0020116) #10	Pnpla3 (MGP_PahariEiJ_G0020115) #11	Pnpla5 (MGP_PahariEiJ_G0020114) #12	Sult4a1 (MGP_PahariEiJ_G0020113) #13	Efcab6 (MGP_PahariEiJ_G0020112) #14	Mpped1 (MGP_PahariEiJ_G0020111) #15	Scube1 (MGP_PahariEiJ_G0020110) #16	Ttll12 (MGP_PahariEiJ_G0020109) #17	Tspo (MGP_PahariEiJ_G0020108) #18	Mcat (MGP_PahariEiJ_G0020107) #19	Bik (MGP_PahariEiJ_G0020106) #20	Ttll1 (MGP_PahariEiJ_G0020105) #21	Pacsin2 (MGP_PahariEiJ_G0020104) #22	Arfgap3 (MGP_PahariEiJ_G0020103) #23	A4galt (MGP_PahariEiJ_G0020102) #24	Cyb5r3 (MGP_PahariEiJ_G0020101) #25	Poldip3 (MGP_PahariEiJ_G0020100) #26	Rrp7a (MGP_PahariEiJ_G0020099) #28	Serhl (MGP_PahariEiJ_G0020098) #27	Nfam1 (MGP_PahariEiJ_G0020097) #29	Tcf20 (MGP_PahariEiJ_G0020096) #30	Cyp2d26 (MGP_PahariEiJ_G0020095) #32	MGP_PahariEiJ_G0020094 #32	MGP_PahariEiJ_G0020093 #32	MGP_PahariEiJ_G0020092 #32	MGP_PahariEiJ_G0020091 #32	MGP_PahariEiJ_G0020090 #32	MGP_PahariEiJ_G0020089 #32
Rat	MODERN SPECIES	17	Shisal1 (ENSRNOG00000052725) #7	Parvg (ENSRNOG00000052064) #8	Parvb (ENSRNOG00000055305) #9	Samm50 (ENSRNOG00000011952) #10	Pnpla3 (ENSRNOG00000022268) #11	Pnpla5 (ENSRNOG00000022296) #12	Sult4a1 (ENSRNOG00000046975) #13	Efcab6 (ENSRNOG00000011094) #14	Mpped1 (ENSRNOG00000010834) #15	Scube1 (ENSRNOG00000010617) #16	Ttll12 (ENSRNOG00000022623) #17	Tspo (ENSRNOG00000010549) #18	Mcat (ENSRNOG00000010539) #19	Bik (ENSRNOG00000010359) #20	Ttll1 (ENSRNOG00000010141) #21	Pacsin2 (ENSRNOG00000009756) #22	Arfgap3 (ENSRNOG00000046472) #23	A4galt (ENSRNOG00000009736) #24	AABR07058366.1 (ENSRNOG00000025046)	Cyb5r3 (ENSRNOG00000009592) #25	Poldip3 (ENSRNOG00000022877) #26	Rrp7a (ENSRNOG00000022896) #28	Serhl2 (ENSRNOG00000022932) #27	Nfam1 (ENSRNOG00000022975) #29	Tcf20 (ENSRNOG00000009585) #30	Cyp2d2 (ENSRNOG00000008988) #32	Cyp2d3 (ENSRNOG00000029179) #32	Cyp2d5 (ENSRNOG00000029128) #32	Cyp2d4 (ENSRNOG00000032261) #32	Ndufa6 (ENSRNOG00000008569) #33	Smdt1 (ENSRNOG00000070907) #34
Upper Galilee mountains blind mole rat	MODERN SPECIES	1277	Rtl6 (ENSNGAG00000015474)	Shisal1 (ENSNGAG00000019729) #7	Parvg (ENSNGAG00000000831) #8	ENSNGAG00000000427 #9	Samm50 (ENSNGAG00000018315) #10	Pnpla3 (ENSNGAG00000016346) #11	Sult4a1 (ENSNGAG00000018152) #13	ENSNGAG00000006827	Mpped1 (ENSNGAG00000011686) #15	ENSNGAG00000000494 #16	Ttll12 (ENSNGAG00000020285) #17	Tspo (ENSNGAG00000017715) #18	Mcat (ENSNGAG00000019327) #19	Bik (ENSNGAG00000000452) #20	Ttll1 (ENSNGAG00000012516) #21	Pacsin2 (ENSNGAG00000011688) #22	Arfgap3 (ENSNGAG00000014403) #23	A4galt (ENSNGAG00000017374) #24	Cyb5r3 (ENSNGAG00000010471) #25	Poldip3 (ENSNGAG00000000210) #26	Rrp7a (ENSNGAG00000010039) #28	Serhl (ENSNGAG00000000560) #27	ENSNGAG00000010915 #29	ENSNGAG00000017213 #30	Cyp2d26 (ENSNGAG00000019264) #32	ENSNGAG00000019982 #32	ENSNGAG00000012213 #32	ENSNGAG00000000143 #32	ENSNGAG00000015048 #32	ENSNGAG00000000577 #32	Cyp2d22 (ENSNGAG00000020195) #32
Lesser Egyptian jerboa	MODERN SPECIES	42	Parvg (ENSJJAG00000019773) #8	Parvb (ENSJJAG00000008521) #9	Samm50 (ENSJJAG00000023006) #10	Pnpla3 (ENSJJAG00000020833) #11	Pnpla5 (ENSJJAG00000018734) #12	Sult4a1 (ENSJJAG00000019977) #13	Efcab6 (ENSJJAG00000003593) #14	Mpped1 (ENSJJAG00000021690) #15	Scube1 (ENSJJAG00000004523) #16	Ttll12 (ENSJJAG00000016923) #17	Tspo (ENSJJAG00000021263) #18	Mcat (ENSJJAG00000020943) #19	Bik (ENSJJAG00000017292) #20	Ttll1 (ENSJJAG00000003375) #21	ENSJJAG00000018057	Pacsin2 (ENSJJAG00000022165) #22	Arfgap3 (ENSJJAG00000011502) #23	A4galt (ENSJJAG00000020299) #24	Cyb5r3 (ENSJJAG00000022835) #25	Poldip3 (ENSJJAG00000018034) #26	Rrp7a (ENSJJAG00000019486) #28	Serhl (ENSJJAG00000019158) #27	ENSJJAG00000017824 #29	ENSJJAG00000019261 #30	ENSJJAG00000017515 #32	Cyp2d22 (ENSJJAG00000021489) #32	Ndufa6 (ENSJJAG00000020053) #33	Smdt1 (ENSJJAG00000017571) #34	Pheta2 (ENSJJAG00000005475)	Naga (ENSJJAG00000021575) #35	ENSJJAG00000019913
Kangaroo rat	MODERN SPECIES	398													Mcat (ENSDORG00000012225) #19	Bik (ENSDORG00000012228) #20	Ttll1 (ENSDORG00000004194) #21	Pacsin2 (ENSDORG00000004122) #22	ENSDORG00000027695 #23	A4galt (ENSDORG00000015599) #24	Poldip3 (ENSDORG00000006590) #26	Rrp7a (ENSDORG00000016138) #28	ENSDORG00000026270 #30	ENSDORG00000028779 #32	ENSDORG00000006508 #32	ENSDORG00000002430 #32	ENSDORG00000001647 #32	Ndufa6 (ENSDORG00000008733) #33	Smdt1 (ENSDORG00000008734) #34	Pheta2 (ENSDORG00000024472)	Naga (ENSDORG00000008736) #35	Wbp2nl (ENSDORG00000026174) #36	ENSDORG00000014056 #37
Rodentia_A	ANCESTRAL SPECIES	4	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Sciuridae	ANCESTRAL SPECIES	14	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00960000188846	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36	ENSGT00940000158004 #37
Marmotini	ANCESTRAL SPECIES	4	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00960000188846	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331.u.b #32	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36	ENSGT00940000158004 #37
Marmotini_b	ANCESTRAL SPECIES	60	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00960000188846	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00940000157896 #30	ENSGT00940000153331.u.b #32	ENSGT00940000153331.u.a #32	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35
Arctic ground squirrel	MODERN SPECIES	136	SHISAL1 (ENSUPAG00010001734) #7	PARVG (ENSUPAG00010001757) #8	PARVB (ENSUPAG00010001809) #9	SAMM50 (ENSUPAG00010001870) #10	PNPLA3 (ENSUPAG00010001903) #11	PNPLA5 (ENSUPAG00010001928) #12	SULT4A1 (ENSUPAG00010001963) #13	EFCAB6 (ENSUPAG00010002017) #14	MPPED1 (ENSUPAG00010002082) #15	SCUBE1 (ENSUPAG00010002113) #16	TTLL12 (ENSUPAG00010002356) #17	TSPO (ENSUPAG00010002375) #18	MCAT (ENSUPAG00010002384) #19	ENSUPAG00010002398	TTLL1 (ENSUPAG00010002417) #21	PACSIN2 (ENSUPAG00010002434) #22	ARFGAP3 (ENSUPAG00010002503) #23	A4GALT (ENSUPAG00010002535) #24	CYB5R3 (ENSUPAG00010002538) #25	POLDIP3 (ENSUPAG00010002551) #26	RRP7A (ENSUPAG00010002574) #28	SERHL2 (ENSUPAG00010002586) #27	TCF20 (ENSUPAG00010002621) #30
Squirrel	MODERN SPECIES	318	RTL6 (ENSSTOG00000005224)	SHISAL1 (ENSSTOG00000029147) #7	PARVB (ENSSTOG00000027879) #9	SAMM50 (ENSSTOG00000013891) #10	PNPLA3 (ENSSTOG00000014059) #11	PNPLA5 (ENSSTOG00000019885) #12	SULT4A1 (ENSSTOG00000023129) #13	EFCAB6 (ENSSTOG00000004012) #14	MPPED1 (ENSSTOG00000027935) #15	SCUBE1 (ENSSTOG00000002898) #16	TTLL12 (ENSSTOG00000002879) #17	TSPO (ENSSTOG00000002875) #18	MCAT (ENSSTOG00000001359) #19	ENSSTOG00000000060	TTLL1 (ENSSTOG00000026789) #21	PACSIN2 (ENSSTOG00000004795) #22	ARFGAP3 (ENSSTOG00000020407) #23	ENSSTOG00000023571 #24	CYB5R3 (ENSSTOG00000025231) #25	POLDIP3 (ENSSTOG00000008230) #26	RRP7A (ENSSTOG00000003111) #28	ENSSTOG00000022403 #27	TCF20 (ENSSTOG00000025883) #30	ENSSTOG00000031756 #32	ENSSTOG00000020124 #32	NDUFA6 (ENSSTOG00000015696) #33	SMDT1 (ENSSTOG00000015700) #34	NAGA (ENSSTOG00000023109) #35
Alpin marmot	MODERN SPECIES	76	PRR5 (ENSMMMG00000022969)	RTL6 (ENSMMMG00000023111)	PARVG (ENSMMMG00000023115) #8	SAMM50 (ENSMMMG00000002215) #10	PNPLA3 (ENSMMMG00000002236) #11	PNPLA5 (ENSMMMG00000002336) #12	SULT4A1 (ENSMMMG00000002358) #13	EFCAB6 (ENSMMMG00000002371) #14	MPPED1 (ENSMMMG00000002444) #15	SCUBE1 (ENSMMMG00000002455) #16	TTLL12 (ENSMMMG00000002675) #17	TSPO (ENSMMMG00000002740) #18	ENSMMMG00000002745 #19	ENSMMMG00000002773	TTLL1 (ENSMMMG00000002791) #21	PACSIN2 (ENSMMMG00000002833) #22	ARFGAP3 (ENSMMMG00000002860) #23	A4GALT (ENSMMMG00000002992) #24	CYB5R3 (ENSMMMG00000002994) #25	POLDIP3 (ENSMMMG00000003008) #26	RRP7A (ENSMMMG00000003038) #28	SERHL2 (ENSMMMG00000003053) #27	NFAM1 (ENSMMMG00000003088) #29	TCF20 (ENSMMMG00000003101) #30	ENSMMMG00000003138 #32	NDUFA6 (ENSMMMG00000003211) #33	SMDT1 (ENSMMMG00000003226) #34	NAGA (ENSMMMG00000003269) #35	ENSMMMG00000003326 #36	ENSMMMG00000003339 #37	SMIM45 (ENSMMMG00000003396)
Eurasian red squirrel	MODERN SPECIES	14	PARVG (ENSSVLG00005005192) #8	PARVB (ENSSVLG00005005116) #9	SAMM50 (ENSSVLG00005005065) #10	PNPLA3 (ENSSVLG00005005043) #11	PNPLA5 (ENSSVLG00005004974) #12	SULT4A1 (ENSSVLG00005004928) #13	EFCAB6 (ENSSVLG00005004762) #14	MPPED1 (ENSSVLG00005004708) #15	SCUBE1 (ENSSVLG00005004646) #16	TTLL12 (ENSSVLG00005004617) #17	TSPO (ENSSVLG00005004596) #18	MCAT (ENSSVLG00005004575) #19	ENSSVLG00005004560	ENSSVLG00005004532 #20	TTLL1 (ENSSVLG00005004510) #21	PACSIN2 (ENSSVLG00005004476) #22	ARFGAP3 (ENSSVLG00005004430) #23	A4GALT (ENSSVLG00005004406) #24	ENSSVLG00005004382 #25	POLDIP3 (ENSSVLG00005004309) #26	RRP7A (ENSSVLG00005004268) #28	SERHL2 (ENSSVLG00005004215) #27	NFAM1 (ENSSVLG00005004168) #29	TCF20 (ENSSVLG00005004152) #30	ENSSVLG00005003890 #32	ENSSVLG00005003721	ENSSVLG00005003686 #32	NDUFA6 (ENSSVLG00005003661) #33	SMDT1 (ENSSVLG00005003647) #34	PHETA2 (ENSSVLG00005003635)	NAGA (ENSSVLG00005003614) #35
Hystricomorpha	ANCESTRAL SPECIES	13	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331.q.b #32	ENSGT00940000153331.q.a.a.a #32	ENSGT00940000153331.q.a.a.b #32	ENSGT00940000153331.q.a.b #32	ENSGT00940000153331.r #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34
Hystricomorpha_a	ANCESTRAL SPECIES	6	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331.q.b #32	ENSGT00940000153331.q.a.a.a #32	ENSGT00940000153331.q.a.a.b #32	ENSGT00940000153331.q.a.b #32	ENSGT00940000153331.r #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34
Guinea pig	MODERN SPECIES	28	SHISAL1 (ENSCPOG00000037356) #7	PARVG (ENSCPOG00000022528) #8	PARVB (ENSCPOG00000019700) #9	SAMM50 (ENSCPOG00000005200) #10	PNPLA3 (ENSCPOG00000020336) #11	PNPLA5 (ENSCPOG00000008894) #12	SULT4A1 (ENSCPOG00000012199) #13	EFCAB6 (ENSCPOG00000004320) #14	MPPED1 (ENSCPOG00000002983) #15	SCUBE1 (ENSCPOG00000026406) #16	TTLL12 (ENSCPOG00000002155) #17	TSPO (ENSCPOG00000031571) #18	MCAT (ENSCPOG00000026399) #19	ENSCPOG00000022451 #20	TTLL1 (ENSCPOG00000002675) #21	PACSIN2 (ENSCPOG00000001359) #22	ARFGAP3 (ENSCPOG00000021017) #23	A4GALT (ENSCPOG00000001858) #24	CYB5R3 (ENSCPOG00000020349) #25	POLDIP3 (ENSCPOG00000019524) #26	RRP7A (ENSCPOG00000030547) #28	ENSCPOG00000014975	NFAM1 (ENSCPOG00000019664) #29	TCF20 (ENSCPOG00000024611) #30	ENSCPOG00000031413 #32	ENSCPOG00000034989 #32	ENSCPOG00000036957 #32	ENSCPOG00000035390 #32	ENSCPOG00000035752 #32	ENSCPOG00000033260 #32	ENSCPOG00000039514 #32
Hystricomorpha_b	ANCESTRAL SPECIES	2	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331.q.b #32	ENSGT00940000153331.q.a.b #32	ENSGT00940000153331.q.a.a.b #32	ENSGT00940000153331.r #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686
Long-tailed chinchilla	MODERN SPECIES	120	RTL6 (ENSCLAG00000018095)	SHISAL1 (ENSCLAG00000017217) #7	PARVG (ENSCLAG00000017133) #8	PARVB (ENSCLAG00000017228) #9	SAMM50 (ENSCLAG00000017226) #10	PNPLA3 (ENSCLAG00000016788) #11	PNPLA5 (ENSCLAG00000016574) #12	SULT4A1 (ENSCLAG00000017221) #13	EFCAB6 (ENSCLAG00000016383) #14	MPPED1 (ENSCLAG00000016822) #15	SCUBE1 (ENSCLAG00000016931) #16	TTLL12 (ENSCLAG00000017211) #17	TSPO (ENSCLAG00000016768) #18	MCAT (ENSCLAG00000017236) #19	TTLL1 (ENSCLAG00000017162) #21	PACSIN2 (ENSCLAG00000016516) #22	ARFGAP3 (ENSCLAG00000016273) #23	A4GALT (ENSCLAG00000018104) #24	CYB5R3 (ENSCLAG00000015151) #25	POLDIP3 (ENSCLAG00000016864) #26	RRP7A (ENSCLAG00000016715) #28	NFAM1 (ENSCLAG00000016829) #29	TCF20 (ENSCLAG00000016780) #30	ENSCLAG00000017192 #32	ENSCLAG00000016575 #32	ENSCLAG00000017186 #32	ENSCLAG00000017000	NDUFA6 (ENSCLAG00000016285) #33	SMDT1 (ENSCLAG00000016250) #34	PHETA2 (ENSCLAG00000017176)	NAGA (ENSCLAG00000017177) #35
Degu	MODERN SPECIES	194	SHISAL1 (ENSODEG00000015668) #7	PARVG (ENSODEG00000014889) #8	PARVB (ENSODEG00000014657) #9	SAMM50 (ENSODEG00000014631) #10	PNPLA3 (ENSODEG00000014968) #11	PNPLA5 (ENSODEG00000015510) #12	SULT4A1 (ENSODEG00000014672) #13	EFCAB6 (ENSODEG00000014555) #14	MPPED1 (ENSODEG00000016392) #15	ENSODEG00000014829 #16	TTLL12 (ENSODEG00000015110) #17	TSPO (ENSODEG00000015371) #18	MCAT (ENSODEG00000014684) #19	ENSODEG00000015823 #20	TTLL1 (ENSODEG00000015690) #21	PACSIN2 (ENSODEG00000013973) #22	ENSODEG00000014382	ARFGAP3 (ENSODEG00000014423) #23	A4GALT (ENSODEG00000014971) #24	ENSODEG00000020211	CYB5R3 (ENSODEG00000014899) #25	POLDIP3 (ENSODEG00000014224) #26	RRP7A (ENSODEG00000015126) #28	ENSODEG00000014415 #30	ENSODEG00000014147 #32	ENSODEG00000014495 #32	ENSODEG00000015120 #32
Naked mole-rat female	MODERN SPECIES	24	ENSHGLG00000018749 #10	ENSHGLG00000043827	PNPLA5 (ENSHGLG00000005141) #12	SULT4A1 (ENSHGLG00000005968) #13	ENSHGLG00000008695	ENSHGLG00000037061	ENSHGLG00000036603	ENSHGLG00000005238 #14	MPPED1 (ENSHGLG00000005407) #15	SCUBE1 (ENSHGLG00000008233) #16	TTLL12 (ENSHGLG00000005068) #17	TSPO (ENSHGLG00000046511) #18	MCAT (ENSHGLG00000050791) #19	ENSHGLG00000008535 #20	TTLL1 (ENSHGLG00000038614) #21	PACSIN2 (ENSHGLG00000015562) #22	ARFGAP3 (ENSHGLG00000018359) #23	A4GALT (ENSHGLG00000048655) #24	CYB5R3 (ENSHGLG00000016147) #25	POLDIP3 (ENSHGLG00000013156) #26	ENSHGLG00000015706 #28	ENSHGLG00000039538	NFAM1 (ENSHGLG00000041183) #29	TCF20 (ENSHGLG00000009579) #30	ENSHGLG00000010614 #32	ENSHGLG00000019048 #32	ENSHGLG00000018202 #32	ENSHGLG00000017416 #32	ENSHGLG00000004933 #32	ENSHGLG00000047435	NDUFA6 (ENSHGLG00000040424) #33
Lagomorpha	ANCESTRAL SPECIES	346												ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22
Rabbit	MODERN SPECIES	747											ENSOCUG00000004748 #18	ENSOCUG00000022441 #17	MCAT (ENSOCUG00000015843) #19	ENSOCUG00000023446	TTLL1 (ENSOCUG00000016224) #21	PACSIN2 (ENSOCUG00000015018) #22
Pika	MODERN SPECIES	5235																PACSIN2 (ENSOPRG00000007312) #22
Laurasiatheria	ANCESTRAL SPECIES	6	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00950000182973.a.c.b #22
Hedgehog	MODERN SPECIES	376																PACSIN2 (ENSEEUG00000001067) #22
Common shrew	MODERN SPECIES	63																PACSIN2 (ENSSARG00000005588) #22
Laurasiatheria_a	ANCESTRAL SPECIES	6	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00940000168861	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Artiodactyla	ANCESTRAL SPECIES	6	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00940000168861	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Artiodactyla_a	ANCESTRAL SPECIES	5	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00940000168861	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Camelidae	ANCESTRAL SPECIES	28	ENSGT00940000162853	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Arabian camel	MODERN SPECIES	3	RTL6 (ENSCDRG00005008299)	SHISAL1 (ENSCDRG00005008272) #7	PARVG (ENSCDRG00005008114) #8	PARVB (ENSCDRG00005007689) #9	SAMM50 (ENSCDRG00005007611) #10	PNPLA3 (ENSCDRG00005007501) #11	PNPLA5 (ENSCDRG00005007455) #12	SULT4A1 (ENSCDRG00005007439) #13	EFCAB6 (ENSCDRG00005006471) #14	MPPED1 (ENSCDRG00005006359) #15	SCUBE1 (ENSCDRG00005005513) #16	TTLL12 (ENSCDRG00005005401) #17	TSPO (ENSCDRG00005005369) #18	MCAT (ENSCDRG00005005347) #19	TTLL1 (ENSCDRG00005005244) #21	PACSIN2 (ENSCDRG00005005173) #22	ARFGAP3 (ENSCDRG00005005102) #23	A4GALT (ENSCDRG00005005078) #24	ENSCDRG00005004877 #25	POLDIP3 (ENSCDRG00005004801) #26	RRP7A (ENSCDRG00005004747) #28	SERHL2 (ENSCDRG00005004617) #27	NFAM1 (ENSCDRG00005004559) #29	TCF20 (ENSCDRG00005004496) #30	CYP2D6 (ENSCDRG00005004461) #32	ENSCDRG00005004425	NDUFA6 (ENSCDRG00005004391) #33	SMDT1 (ENSCDRG00005004376) #34	PHETA2 (ENSCDRG00005004362)	NAGA (ENSCDRG00005004327) #35	WBP2NL (ENSCDRG00005004277) #36
Artiodactyla_b	ANCESTRAL SPECIES	5	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00940000168861	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Pecora	ANCESTRAL SPECIES	3	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00940000168861	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Percora_a	ANCESTRAL SPECIES	3	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00940000168861	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Bovidae	ANCESTRAL SPECIES	3	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00940000168861	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331.ub.b.b #32	ENSGT00940000153331.ub.b.a #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35
Bovinae	ANCESTRAL SPECIES	10	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00940000168861	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331.ub.b.b #32	ENSGT00500000045764.a.b.a	ENSGT00500000045764.a.a	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35
Bos	ANCESTRAL SPECIES	2	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662.q #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00940000168861	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331.ub.b.b #32	ENSGT00500000045764.a.b.a	ENSGT00940000153331.ub.b.a #32	ENSGT00500000045764.a.a	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686
Bos_a	ANCESTRAL SPECIES	24	ENSGT00940000162853	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662.q #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00500000045764.a.b.a	ENSGT00940000153331.ub.b.a #32	ENSGT00500000045764.b	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35
Domestic yak	MODERN SPECIES	24	PRR5 (ENSBGRG00000017731)	ENSBGRG00000017513 #7	PARVG (ENSBGRG00000017217) #8	PARVB (ENSBGRG00000016641) #9	SAMM50 (ENSBGRG00000016233) #10	PNPLA3 (ENSBGRG00000016172) #11	PNPLA5 (ENSBGRG00000015622) #12	SULT4A1 (ENSBGRG00000015511) #13	EFCAB6 (ENSBGRG00000015099) #14	MPPED1 (ENSBGRG00000015015) #15	SCUBE1 (ENSBGRG00000014692) #16	TTLL12 (ENSBGRG00000014459) #17	ENSBGRG00000014370 #18	MCAT (ENSBGRG00000014312) #19	TTLL1 (ENSBGRG00000013993) #21	PACSIN2 (ENSBGRG00000013434) #22	ENSBGRG00000013393	ARFGAP3 (ENSBGRG00000013133) #23	A4GALT (ENSBGRG00000013056) #24	ENSBGRG00000012803 #25	POLDIP3 (ENSBGRG00000012521) #26	RRP7A (ENSBGRG00000012277) #28	SERHL2 (ENSBGRG00000012024) #27	ENSBGRG00000011862 #29	TCF20 (ENSBGRG00000011570) #30	ENSBGRG00000011415	ENSBGRG00000011273	CYP2D6 (ENSBGRG00000010949) #32	ENSBGRG00000010810	NDUFA6 (ENSBGRG00000010730) #33	SMDT1 (ENSBGRG00000010698) #34
Wild yak	MODERN SPECIES	1348																PACSIN2 (ENSBMUG00000015498) #22	ENSBMUG00000015432	ARFGAP3 (ENSBMUG00000015407) #23	A4GALT (ENSBMUG00000015333) #24	CYB5R3 (ENSBMUG00000015323) #25	POLDIP3 (ENSBMUG00000015304) #26	RRP7A (ENSBMUG00000015257) #28	SERHL2 (ENSBMUG00000015243) #27	NFAM1 (ENSBMUG00000015210) #29	ENSBMUG00000015199 #30
Bos_b	ANCESTRAL SPECIES	30	ENSGT00940000162853	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662.q #11	ENSGT00940000158662 #13	ENSGT00940000168861	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00390000003152.j	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331.ub.b.b #32	ENSGT00500000045764.a.b.a	ENSGT00940000153331.ub.b.a #32	ENSGT00500000045764.a.a	ENSGT00390000018898 #33	ENSGT00390000017489 #34
Hybrid Bos Indicus	MODERN SPECIES	24	ENSBIXG00005008168	PARVB (ENSBIXG00005000124) #9	SAMM50 (ENSBIXG00005008064) #10	ENSBIXG00005008042 #11	ENSBIXG00005000075 #11	ENSBIXG00005008026	PNPLA5 (ENSBIXG00005008008) #12	SULT4A1 (ENSBIXG00005007987) #13	EFCAB6 (ENSBIXG00005007967) #14	MPPED1 (ENSBIXG00005007913) #15	SCUBE1 (ENSBIXG00005007893) #16	TTLL12 (ENSBIXG00005007871) #17	ENSBIXG00005007864 #18	MCAT (ENSBIXG00005029270) #19	TTLL1 (ENSBIXG00005029297) #21	PACSIN2 (ENSBIXG00005029361) #22	ENSBIXG00005029393	ENSBIXG00005029398	ARFGAP3 (ENSBIXG00005029410) #23	ENSBIXG00005029425	A4GALT (ENSBIXG00005029430) #24	CYB5R3 (ENSBIXG00005029451) #25	POLDIP3 (ENSBIXG00005029477) #26	RRP7A (ENSBIXG00005029494) #28	SERHL2 (ENSBIXG00005029505) #27	NFAM1 (ENSBIXG00005029538) #29	TCF20 (ENSBIXG00005029571) #30	CYP2D6 (ENSBIXG00005029641) #32	ENSBIXG00005029763	ENSBIXG00005029773	NDUFA6 (ENSBIXG00005029777) #33
Cow	MODERN SPECIES	24	SHISAL1 (ENSBTAG00000003574) #7	PARVG (ENSBTAG00000008057) #8	PARVB (ENSBTAG00000021978) #9	SAMM50 (ENSBTAG00000045957) #10	ENSBTAG00000003367 #11	ENSBTAG00000045746 #11	SULT4A1 (ENSBTAG00000006273) #13	EFCAB6 (ENSBTAG00000030189)	ENSBTAG00000053264 #14	MPPED1 (ENSBTAG00000053619) #15	SCUBE1 (ENSBTAG00000011275) #16	TTLL12 (ENSBTAG00000001708) #17	TSPO (ENSBTAG00000018073) #18	MCAT (ENSBTAG00000002413) #19	TTLL1 (ENSBTAG00000012030) #21	PACSIN2 (ENSBTAG00000019290) #22	ENSBTAG00000045575	ARFGAP3 (ENSBTAG00000001057) #23	ENSBTAG00000030199	A4GALT (ENSBTAG00000026497) #24	CYB5R3 (ENSBTAG00000016516) #25	POLDIP3 (ENSBTAG00000016511) #26	RRP7 (ENSBTAG00000016510) #28	SERHL2 (ENSBTAG00000016507) #27	NFAM1 (ENSBTAG00000005018) #29	TCF20 (ENSBTAG00000000662) #30	CYP2D14 (ENSBTAG00000026502) #32	ENSBTAG00000037632	CYP2D43 (ENSBTAG00000026501) #32	ENSBTAG00000038146	NDUFA6 (ENSBTAG00000009509) #33
American bison	MODERN SPECIES	3105			SMIM36 (ENSBBBG00000021690)	MMD (ENSBBBG00000008576)	HLF (ENSBBBG00000021656)	ENSBBBG00000021646	PNPLA5 (ENSBBBG00000021629) #12	SULT4A1 (ENSBBBG00000008526) #13	EFCAB6 (ENSBBBG00000021544) #14	MPPED1 (ENSBBBG00000021474) #15	SCUBE1 (ENSBBBG00000021457) #16	TTLL12 (ENSBBBG00000021407) #17	ENSBBBG00000021347	ENSBBBG00000007635	TTLL1 (ENSBBBG00000021317) #21	PACSIN2 (ENSBBBG00000021286) #22	ENSBBBG00000006917	ARFGAP3 (ENSBBBG00000021203) #23	A4GALT (ENSBBBG00000021164) #24	CYB5R3 (ENSBBBG00000021158) #25	POLDIP3 (ENSBBBG00000021128) #26	RRP7A (ENSBBBG00000021090) #28	SERHL2 (ENSBBBG00000021075) #27	NFAM1 (ENSBBBG00000021019) #29	ENSBBBG00000005645 #30	ENSBBBG00000021001 #32	ENSBBBG00000005638	NDUFA6 (ENSBBBG00000020956) #33	SMDT1 (ENSBBBG00000005631) #34	PHETA2 (ENSBBBG00000020942)	NAGA (ENSBBBG00000020936) #35
Caprinae	ANCESTRAL SPECIES		ENSGT00940000162853	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331.ub.a.c #32	ENSGT00940000153331.ub.b.a #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35
Goat	MODERN SPECIES	24	RTL6 (ENSCHIG00000003869)	SHISAL1 (ENSCHIG00000012885) #7	PARVG (ENSCHIG00000017536) #8	PARVB (ENSCHIG00000025001) #9	SAMM50 (ENSCHIG00000023930) #10	PNPLA3 (ENSCHIG00000012869) #11	PNPLA5 (ENSCHIG00000016182) #12	SULT4A1 (ENSCHIG00000019454) #13	EFCAB6 (ENSCHIG00000021779) #14	MPPED1 (ENSCHIG00000025490) #15	SCUBE1 (ENSCHIG00000017867) #16	TTLL12 (ENSCHIG00000017620) #17	TSPO (ENSCHIG00000012367) #18	MCAT (ENSCHIG00000016584) #19	TTLL1 (ENSCHIG00000015382) #21	PACSIN2 (ENSCHIG00000010912) #22	ARFGAP3 (ENSCHIG00000022666) #23	A4GALT (ENSCHIG00000023291) #24	ENSCHIG00000009613 #25	POLDIP3 (ENSCHIG00000020171) #26	RRP7A (ENSCHIG00000026787) #28	SERHL2 (ENSCHIG00000016037) #27	NFAM1 (ENSCHIG00000013754) #29	TCF20 (ENSCHIG00000018238) #30	CYP2D6 (ENSCHIG00000012914) #32	CYP2D43 (ENSCHIG00000017340) #32	ENSCHIG00000016163	NDUFA6 (ENSCHIG00000013801) #33	SMDT1 (ENSCHIG00000020634) #34	PHETA2 (ENSCHIG00000006843)	NAGA (ENSCHIG00000026860) #35
Rambouillet Sheep	MODERN SPECIES	19	SHISAL1 (ENSOARG00020001443) #7	ENSOARG00020001422	PARVG (ENSOARG00020001411) #8	PARVB (ENSOARG00020001366) #9	SAMM50 (ENSOARG00020001328) #10	PNPLA3 (ENSOARG00020001308) #11	PNPLA5 (ENSOARG00020001280) #12	ENSOARG00020001258 #13	EFCAB6 (ENSOARG00020001129) #14	MPPED1 (ENSOARG00020001099) #15	SCUBE1 (ENSOARG00020001035) #16	TTLL12 (ENSOARG00020000987) #17	TSPO (ENSOARG00020000969) #18	MCAT (ENSOARG00020000942) #19	TTLL1 (ENSOARG00020000919) #21	PACSIN2 (ENSOARG00020000898) #22	ARFGAP3 (ENSOARG00020000875) #23	ENSOARG00020000856	A4GALT (ENSOARG00020000844) #24	CYB5R3 (ENSOARG00020000828) #25	POLDIP3 (ENSOARG00020000803) #26	RRP7A (ENSOARG00020000772) #28	SERHL2 (ENSOARG00020000733) #27	TCF20 (ENSOARG00020000658) #30	ENSOARG00020000633 #32	ENSOARG00020000601 #32	ENSOARG00020000579 #32	CYP2D6 (ENSOARG00020000491) #32	ENSOARG00020000379 #32	ENSOARG00020000342	NDUFA6 (ENSOARG00020000319) #33
Siberian musk deer	MODERN SPECIES	1246	SHISAL1 (ENSMMSG00000023623) #7	PARVG (ENSMMSG00000023633) #8	PARVB (ENSMMSG00000023650) #9	SAMM50 (ENSMMSG00000023678) #10	ENSMMSG00000023692 #11	PNPLA5 (ENSMMSG00000023698) #12	SULT4A1 (ENSMMSG00000023709) #13	EFCAB6 (ENSMMSG00000023723) #14	MPPED1 (ENSMMSG00000023739) #15	SCUBE1 (ENSMMSG00000023751) #16	ENSMMSG00000023760	TTLL12 (ENSMMSG00000023761) #17	TSPO (ENSMMSG00000023767) #18	MCAT (ENSMMSG00000023771) #19	TTLL1 (ENSMMSG00000023775) #21	PACSIN2 (ENSMMSG00000023789) #22	ARFGAP3 (ENSMMSG00000023802) #23	A4GALT (ENSMMSG00000023813) #24	CYB5R3 (ENSMMSG00000023817) #25	POLDIP3 (ENSMMSG00000023834) #26	RRP7A (ENSMMSG00000023854) #28	SERHL2 (ENSMMSG00000023868) #27	NFAM1 (ENSMMSG00000023885) #29	TCF20 (ENSMMSG00000023893) #30	CYP2D6 (ENSMMSG00000023898) #32	ENSMMSG00000023906
Yarkand deer	MODERN SPECIES	14	RTL6 (ENSCHYG00000015640)	SHISAL1 (ENSCHYG00000015506) #7	ENSCHYG00000015289 #8	PARVB (ENSCHYG00000014735) #9	SAMM50 (ENSCHYG00000014331) #10	PNPLA5 (ENSCHYG00000014161) #12	SULT4A1 (ENSCHYG00000014087) #13	ENSCHYG00000014048	EFCAB6 (ENSCHYG00000013846) #14	MPPED1 (ENSCHYG00000013760) #15	SCUBE1 (ENSCHYG00000013631) #16	TTLL12 (ENSCHYG00000025111) #17	TSPO (ENSCHYG00000025079) #18	MCAT (ENSCHYG00000025064) #19	ENSCHYG00000025015 #21	PACSIN2 (ENSCHYG00000024962) #22	ARFGAP3 (ENSCHYG00000024824) #23	A4GALT (ENSCHYG00000024795) #24	CYB5R3 (ENSCHYG00000024741) #25	POLDIP3 (ENSCHYG00000024515) #26	RRP7A (ENSCHYG00000024457) #28	SERHL2 (ENSCHYG00000024298) #27	NFAM1 (ENSCHYG00000024240) #29	TCF20 (ENSCHYG00000024164) #30	ENSCHYG00000024144	NDUFA6 (ENSCHYG00000024109) #33	SMDT1 (ENSCHYG00000024078) #34	PHETA2 (ENSCHYG00000024027)	NAGA (ENSCHYG00000023946) #35	ENSCHYG00000023904 #36	SEPTIN3 (ENSCHYG00000023685) #37
Cetacea	ANCESTRAL SPECIES	8	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00940000168861	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00510000046986.x.b.b.b.b
Odontoceti	ANCESTRAL SPECIES	7	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00940000168861	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00510000046986.x.b.b.b.b
Odontoceti_a	ANCESTRAL SPECIES	6	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00940000168861	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00940000156720.g #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00510000046986.x.b.b.b.b
Odontoceti_b	ANCESTRAL SPECIES	7	ENSGT00940000162853	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000158662 #13	ENSGT00940000168861	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00940000156720.g #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00510000046986.x.b.b.b.b
Monodontidae	ANCESTRAL SPECIES	6	ENSGT00940000162853	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000158662 #13	ENSGT00940000168861	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00940000156720.g #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00510000046986.x.b.b.b.b
Beluga whale	MODERN SPECIES	111	PRR5 (ENSDLEG00000018325)	ENSDLEG00000018316	RTL6 (ENSDLEG00000018311)	SHISAL1 (ENSDLEG00000018302) #7	PARVG (ENSDLEG00000018262) #8	SAMM50 (ENSDLEG00000018205) #10	PNPLA3 (ENSDLEG00000018179) #11	SULT4A1 (ENSDLEG00000018153) #13	EFCAB6 (ENSDLEG00000017776) #14	MPPED1 (ENSDLEG00000017710) #15	SCUBE1 (ENSDLEG00000017600) #16	TTLL12 (ENSDLEG00000017564) #17	TSPO (ENSDLEG00000017542) #18	MCAT (ENSDLEG00000017525) #19	TTLL1 (ENSDLEG00000017498) #21	PACSIN2 (ENSDLEG00000017449) #22	ARFGAP3 (ENSDLEG00000017425) #23	A4GALT (ENSDLEG00000017417) #24	CYB5R3 (ENSDLEG00000017391) #25	POLDIP3 (ENSDLEG00000017333) #26	RRP7A (ENSDLEG00000017301) #28	ENSDLEG00000017278 #27	NFAM1 (ENSDLEG00000017261) #29	TCF20 (ENSDLEG00000017236) #30	CYP2D6 (ENSDLEG00000017138) #32	ENSDLEG00000017118	NDUFA6 (ENSDLEG00000017111) #33	ENSDLEG00000017096 #34	PHETA2 (ENSDLEG00000017087)	NAGA (ENSDLEG00000017073) #35	ENSDLEG00000017069
Narwhal	MODERN SPECIES	313	ENSMMNG00015019908	SHISAL1 (ENSMMNG00015019890) #7	PARVG (ENSMMNG00015019863) #8	PARVB (ENSMMNG00015019825) #9	SAMM50 (ENSMMNG00015019771) #10	PNPLA3 (ENSMMNG00015019738) #11	SULT4A1 (ENSMMNG00015019717) #13	ENSMMNG00015019692	ENSMMNG00015019671 #14	MPPED1 (ENSMMNG00015019655) #15	SCUBE1 (ENSMMNG00015019599) #16	TTLL12 (ENSMMNG00015019555) #17	TSPO (ENSMMNG00015019534) #18	ENSMMNG00015019517 #19	TTLL1 (ENSMMNG00015019492) #21	PACSIN2 (ENSMMNG00015019433) #22	ARFGAP3 (ENSMMNG00015019372) #23	A4GALT (ENSMMNG00015019341) #24	CYB5R3 (ENSMMNG00015019310) #25	POLDIP3 (ENSMMNG00015019228) #26	RRP7A (ENSMMNG00015019206) #28	SERHL2 (ENSMMNG00015019169) #27	NFAM1 (ENSMMNG00015019143) #29	TCF20 (ENSMMNG00015019116) #30	CYP2D6 (ENSMMNG00015019074) #32	ENSMMNG00015019043	NDUFA6 (ENSMMNG00015019020) #33	SMDT1 (ENSMMNG00015018999) #34	PHETA2 (ENSMMNG00015018993)	NAGA (ENSMMNG00015018971) #35	ENSMMNG00015018950
Vaquita	MODERN SPECIES	1	RTL6 (ENSPSNG00000022199)	ENSPSNG00000022205	SHISAL1 (ENSPSNG00000022215) #7	PARVG (ENSPSNG00000022229) #8	PARVB (ENSPSNG00000022257) #9	SAMM50 (ENSPSNG00000022286) #10	PNPLA3 (ENSPSNG00000022305) #11	ENSPSNG00000022316 #13	EFCAB6 (ENSPSNG00000022332) #14	MPPED1 (ENSPSNG00000022345) #15	SCUBE1 (ENSPSNG00000004199) #16	TTLL12 (ENSPSNG00000004252) #17	TSPO (ENSPSNG00000004291) #18	ENSPSNG00000004317 #19	ENSPSNG00000004355 #21	PACSIN2 (ENSPSNG00000004404) #22	ARFGAP3 (ENSPSNG00000004464) #23	A4GALT (ENSPSNG00000004512) #24	ENSPSNG00000004550 #25	POLDIP3 (ENSPSNG00000004603) #26	RRP7A (ENSPSNG00000004651) #28	SERHL2 (ENSPSNG00000004679) #27	NFAM1 (ENSPSNG00000004737) #29	TCF20 (ENSPSNG00000004785) #30	CYP2D6 (ENSPSNG00000005100) #32	ENSPSNG00000005817	NDUFA6 (ENSPSNG00000005840) #33	SMDT1 (ENSPSNG00000005880) #34	PHETA2 (ENSPSNG00000005897)	NAGA (ENSPSNG00000005931) #35	ENSPSNG00000005982
Dolphin	MODERN SPECIES	6748																PACSIN2 (ENSTTRG00000015273) #22
Sperm whale	MODERN SPECIES	235																PACSIN2 (ENSPCTG00005018409) #22
Blue whale	MODERN SPECIES	1	RTL6 (ENSBMSG00010017099)	SHISAL1 (ENSBMSG00010017077) #7	PARVG (ENSBMSG00010017021) #8	PARVB (ENSBMSG00010016913) #9	SAMM50 (ENSBMSG00010016864) #10	PNPLA3 (ENSBMSG00010016776) #11	PNPLA5 (ENSBMSG00010016715) #12	SULT4A1 (ENSBMSG00010016683) #13	EFCAB6 (ENSBMSG00010016536) #14	MPPED1 (ENSBMSG00010016486) #15	SCUBE1 (ENSBMSG00010016454) #16	TTLL12 (ENSBMSG00010016417) #17	TSPO (ENSBMSG00010016378) #18	ENSBMSG00010016366 #19	TTLL1 (ENSBMSG00010016309) #21	PACSIN2 (ENSBMSG00010016230) #22	ARFGAP3 (ENSBMSG00010016182) #23	ENSBMSG00010016156 #24	CYB5R3 (ENSBMSG00010016101) #25	POLDIP3 (ENSBMSG00010016041) #26	RRP7A (ENSBMSG00010016005) #28	SERHL2 (ENSBMSG00010015957) #27	NFAM1 (ENSBMSG00010015882) #29	TCF20 (ENSBMSG00010015833) #30	CYP2D6 (ENSBMSG00010015752) #32	ENSBMSG00010015702 #33	SMDT1 (ENSBMSG00010015681) #34	PHETA2 (ENSBMSG00010015663)	NAGA (ENSBMSG00010015635) #35	ENSBMSG00010015604	WBP2NL (ENSBMSG00010015557) #36
Suina	ANCESTRAL SPECIES	21	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00940000168861	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36	ENSGT00940000158004 #37
Chacoan peccary	MODERN SPECIES	871	SHISAL1 (ENSCWAG00000016972) #7	PARVG (ENSCWAG00000016999) #8	PARVB (ENSCWAG00000017124) #9	SAMM50 (ENSCWAG00000017270) #10	PNPLA3 (ENSCWAG00000017321) #11	PNPLA5 (ENSCWAG00000017349) #12	SULT4A1 (ENSCWAG00000017423) #13	ENSCWAG00000017478	ENSCWAG00000017531 #14	MPPED1 (ENSCWAG00000017556) #15	SCUBE1 (ENSCWAG00000017599) #16	TTLL12 (ENSCWAG00000017752) #17	TSPO (ENSCWAG00000017777) #18	MCAT (ENSCWAG00000017803) #19	TTLL1 (ENSCWAG00000017849) #21	PACSIN2 (ENSCWAG00000017889) #22	ARFGAP3 (ENSCWAG00000017978) #23	A4GALT (ENSCWAG00000018052) #24	CYB5R3 (ENSCWAG00000018067) #25	POLDIP3 (ENSCWAG00000018163) #26	RRP7A (ENSCWAG00000018248) #28	SERHL2 (ENSCWAG00000018279) #27	NFAM1 (ENSCWAG00000018399) #29	TCF20 (ENSCWAG00000018440) #30	CYP2D6 (ENSCWAG00000018484) #32	ENSCWAG00000018592 #33	SMDT1 (ENSCWAG00000018626) #34	NAGA (ENSCWAG00000018641) #35	PHETA2 (ENSCWAG00000018670)	WBP2NL (ENSCWAG00000018697) #36	SEPTIN3 (ENSCWAG00000018779) #37
Pig	MODERN SPECIES	13	RTL6 (ENSSSCG00000000022)	SHISAL1 (ENSSSCG00000039522) #7	PARVG (ENSSSCG00000000025) #8	PARVB (ENSSSCG00000000024) #9	SAMM50 (ENSSSCG00000028346) #10	PNPLA3 (ENSSSCG00000027266) #11	SULT4A1 (ENSSSCG00000000026) #13	ENSSSCG00000060901	ENSSSCG00000000028 #14	MPPED1 (ENSSSCG00000038685) #15	SCUBE1 (ENSSSCG00000000029) #16	TTLL12 (ENSSSCG00000000034) #17	TSPO (ENSSSCG00000000033) #18	MCAT (ENSSSCG00000000031) #19	TTLL1 (ENSSSCG00000000035) #21	PACSIN2 (ENSSSCG00000000036) #22	ARFGAP3 (ENSSSCG00000000037) #23	A4GALT (ENSSSCG00000026962) #24	CYB5R3 (ENSSSCG00000000038) #25	POLDIP3 (ENSSSCG00000000039) #26	RRP7A (ENSSSCG00000033983) #28	SERHL2 (ENSSSCG00000034350) #27	NFAM1 (ENSSSCG00000037425) #29	TCF20 (ENSSSCG00000032171) #30	CYP2D6 (ENSSSCG00000000046) #32	NDUFA6 (ENSSSCG00000000045) #33	SMDT1 (ENSSSCG00000020945) #34	NAGA (ENSSSCG00000000050) #35	PHETA2 (ENSSSCG00000038492)	ENSSSCG00000062925 #36	SEPTIN3 (ENSSSCG00000000040) #37
Laurasiatheria_b	ANCESTRAL SPECIES	6	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00940000168861	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Carnivora	ANCESTRAL SPECIES	3	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00940000168861	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Felidae	ANCESTRAL SPECIES	2	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00940000168861	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Panthera	ANCESTRAL SPECIES		ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36	ENSGT00940000158004 #37
Panthera_a	ANCESTRAL SPECIES	12	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36	ENSGT00940000158004 #37
leopard	MODERN SPECIES	13	RTL6 (ENSPPRG00000020941)	SHISAL1 (ENSPPRG00000008221) #7	PARVG (ENSPPRG00000008485) #8	PARVB (ENSPPRG00000008690) #9	SAMM50 (ENSPPRG00000009065) #10	PNPLA3 (ENSPPRG00000009381) #11	PNPLA5 (ENSPPRG00000010836) #12	SULT4A1 (ENSPPRG00000010888) #13	EFCAB6 (ENSPPRG00000011676) #14	MPPED1 (ENSPPRG00000011951) #15	SCUBE1 (ENSPPRG00000012749) #16	TTLL12 (ENSPPRG00000013001) #17	TSPO (ENSPPRG00000013016) #18	MCAT (ENSPPRG00000014078) #19	TTLL1 (ENSPPRG00000014204) #21	PACSIN2 (ENSPPRG00000016739) #22	ARFGAP3 (ENSPPRG00000017345) #23	A4GALT (ENSPPRG00000021068) #24	CYB5R3 (ENSPPRG00000020213) #25	POLDIP3 (ENSPPRG00000021188) #26	RRP7A (ENSPPRG00000022185) #28	SERHL2 (ENSPPRG00000022923) #27	TCF20 (ENSPPRG00000022788) #30	CYP2D6 (ENSPPRG00000001149) #32	NDUFA6 (ENSPPRG00000001515) #33	SMDT1 (ENSPPRG00000001619) #34	PHETA2 (ENSPPRG00000021140)	NAGA (ENSPPRG00000001659) #35	WBP2NL (ENSPPRG00000001885) #36	ENSPPRG00000002117 #37	SMIM45 (ENSPPRG00000021195)
lion	MODERN SPECIES	7	SHISAL1 (ENSPLOG00000017777) #7	PARVG (ENSPLOG00000017646) #8	PARVB (ENSPLOG00000017412) #9	SAMM50 (ENSPLOG00000017360) #10	PNPLA3 (ENSPLOG00000017228) #11	PNPLA5 (ENSPLOG00000017160) #12	SULT4A1 (ENSPLOG00000017097) #13	EFCAB6 (ENSPLOG00000016539) #14	MPPED1 (ENSPLOG00000016441) #15	SCUBE1 (ENSPLOG00000016265) #16	TTLL12 (ENSPLOG00000016218) #17	TSPO (ENSPLOG00000016176) #18	ENSPLOG00000016144 #19	ENSPLOG00000016124 #20	TTLL1 (ENSPLOG00000015917) #21	PACSIN2 (ENSPLOG00000015850) #22	ARFGAP3 (ENSPLOG00000015720) #23	A4GALT (ENSPLOG00000015622) #24	CYB5R3 (ENSPLOG00000015576) #25	POLDIP3 (ENSPLOG00000015355) #26	RRP7A (ENSPLOG00000015304) #28	ENSPLOG00000015222 #27	ENSPLOG00000015176 #29	TCF20 (ENSPLOG00000015043) #30	CYP2D6 (ENSPLOG00000014934) #32	NDUFA6 (ENSPLOG00000014890) #33	SMDT1 (ENSPLOG00000014851) #34	PHETA2 (ENSPLOG00000014836)	NAGA (ENSPLOG00000014772) #35	ENSPLOG00000014680 #36	ENSPLOG00000014331 #37
Tiger	MODERN SPECIES	130										EFCAB6 (ENSPTIG00000021766) #14	ENSPTIG00000021688 #15	SCUBE1 (ENSPTIG00000019735) #16	ENSPTIG00000018666 #17	MCAT (ENSPTIG00000018256) #19	TTLL1 (ENSPTIG00000017181) #21	PACSIN2 (ENSPTIG00000011517) #22	ARFGAP3 (ENSPTIG00000008192) #23	A4GALT (ENSPTIG00000007558) #24	CYB5R3 (ENSPTIG00000002063) #25	POLDIP3 (ENSPTIG00000021396) #26	RRP7A (ENSPTIG00000020965) #28	SERHL2 (ENSPTIG00000019555) #27	NFAM1 (ENSPTIG00000019052) #29	TCF20 (ENSPTIG00000017350) #30	CYP2D6 (ENSPTIG00000016476) #32	NDUFA6 (ENSPTIG00000015981) #33	SMDT1 (ENSPTIG00000015252) #34	PHETA2 (ENSPTIG00000004878)	NAGA (ENSPTIG00000013994) #35	WBP2NL (ENSPTIG00000013168) #36	ENSPTIG00000011548 #37
Cat	MODERN SPECIES	238	ENSFCAG00000048764	PARVG (ENSFCAG00000007344) #8	PARVB (ENSFCAG00000022856) #9	ENSFCAG00000007342 #11	PNPLA5 (ENSFCAG00000007341) #12	SULT4A1 (ENSFCAG00000007340) #13	ENSFCAG00000050580	EFCAB6 (ENSFCAG00000007339) #14	ENSFCAG00000036862 #15	SCUBE1 (ENSFCAG00000012132) #16	TTLL12 (ENSFCAG00000012130) #17	ENSFCAG00000029661 #18	MCAT (ENSFCAG00000012127) #19	ENSFCAG00000050562 #20	TTLL1 (ENSFCAG00000012123) #21	PACSIN2 (ENSFCAG00000010098) #22	ARFGAP3 (ENSFCAG00000008578) #23	A4GALT (ENSFCAG00000008576) #24	CYB5R3 (ENSFCAG00000037586) #25	POLDIP3 (ENSFCAG00000032029) #26	RRP7A (ENSFCAG00000033258) #28	SERHL2 (ENSFCAG00000031831) #27	ENSFCAG00000043467	NFAM1 (ENSFCAG00000018760) #29	TCF20 (ENSFCAG00000023219) #30	CYP2D6 (ENSFCAG00000026110) #32	ENSFCAG00000033784	NDUFA6 (ENSFCAG00000025921) #33	SMDT1 (ENSFCAG00000000892) #34	PHETA2 (ENSFCAG00000027697)	NAGA (ENSFCAG00000001451) #35
Caniformia	ANCESTRAL SPECIES	20	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00940000168861	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Canidae	ANCESTRAL SPECIES	10	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00940000168861	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Canis_lupus	ANCESTRAL SPECIES	9	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00940000168861	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Dingo	MODERN SPECIES	307	SHISAL1 (ENSCAFG00020009552) #7	PARVG (ENSCAFG00020009555) #8	PARVB (ENSCAFG00020009571) #9	SAMM50 (ENSCAFG00020009579) #10	PNPLA3 (ENSCAFG00020009586) #11	PNPLA5 (ENSCAFG00020009607) #12	SULT4A1 (ENSCAFG00020009618) #13	ENSCAFG00020009631	ENSCAFG00020009648 #14	MPPED1 (ENSCAFG00020009661) #15	SCUBE1 (ENSCAFG00020009801) #16	TTLL12 (ENSCAFG00020010488) #17	TSPO (ENSCAFG00020010493) #18	MCAT (ENSCAFG00020010500) #19	TTLL1 (ENSCAFG00020010516) #21	PACSIN2 (ENSCAFG00020010525) #22	ARFGAP3 (ENSCAFG00020000154) #23	A4GALT (ENSCAFG00020000170) #24	CYB5R3 (ENSCAFG00020000181) #25	POLDIP3 (ENSCAFG00020000227) #26	RRP7A (ENSCAFG00020000251) #28	SERHL2 (ENSCAFG00020000268) #27	ENSCAFG00020000282 #29	TCF20 (ENSCAFG00020000288) #30	CYP2D6 (ENSCAFG00020000322) #32	NDUFA6 (ENSCAFG00020000814) #33	SMDT1 (ENSCAFG00020000823) #34	PHETA2 (ENSCAFG00020000836)	NAGA (ENSCAFG00020000842) #35	WBP2NL (ENSCAFG00020000849) #36	ENSCAFG00020000874 #37
Dog	MODERN SPECIES	1	SHISAL1 (ENSCAFG00845012306) #7	PARVG (ENSCAFG00845012360) #8	PARVB (ENSCAFG00845012438) #9	SAMM50 (ENSCAFG00845012750) #10	PNPLA3 (ENSCAFG00845012819) #11	PNPLA5 (ENSCAFG00845012877) #12	SULT4A1 (ENSCAFG00845012928) #13	EFCAB6 (ENSCAFG00845013088) #14	MPPED1 (ENSCAFG00845013653) #15	SCUBE1 (ENSCAFG00845013737) #16	TTLL12 (ENSCAFG00845014024) #17	TSPO (ENSCAFG00845014235) #18	MCAT (ENSCAFG00845014248) #19	ENSCAFG00845014282 #20	TTLL1 (ENSCAFG00845014313) #21	PACSIN2 (ENSCAFG00845014394) #22	ARFGAP3 (ENSCAFG00845014445) #23	A4GALT (ENSCAFG00845014498) #24	ENSCAFG00845014511	CYB5R3 (ENSCAFG00845014552) #25	POLDIP3 (ENSCAFG00845014629) #26	RRP7 (ENSCAFG00845014703) #28	SERHL2 (ENSCAFG00845014763) #27	NFAM1 (ENSCAFG00845014831) #29	TCF20 (ENSCAFG00845014889) #30	CYP2D15 (ENSCAFG00845014943) #32	ENSCAFG00845015015	NDUFA6 (ENSCAFG00845015040) #33	SMDT1 (ENSCAFG00845015069) #34	PHETA2 (ENSCAFG00845015096)	NAGA (ENSCAFG00845015153) #35
Red fox	MODERN SPECIES	134	SHISAL1 (ENSVVUG00000028630) #7	PARVG (ENSVVUG00000028631) #8	PARVB (ENSVVUG00000028632) #9	SAMM50 (ENSVVUG00000028635) #10	PNPLA3 (ENSVVUG00000028636) #11	PNPLA5 (ENSVVUG00000000113) #12	SULT4A1 (ENSVVUG00000000168) #13	EFCAB6 (ENSVVUG00000000261) #14	MPPED1 (ENSVVUG00000000406) #15	SCUBE1 (ENSVVUG00000000432) #16	TTLL12 (ENSVVUG00000000494) #17	TSPO (ENSVVUG00000000966) #18	ENSVVUG00000000978 #19	BIK (ENSVVUG00000000999) #20	TTLL1 (ENSVVUG00000001022) #21	PACSIN2 (ENSVVUG00000001092) #22	ARFGAP3 (ENSVVUG00000002187) #23	A4GALT (ENSVVUG00000002200) #24	CYB5R3 (ENSVVUG00000002208) #25	POLDIP3 (ENSVVUG00000002231) #26	RRP7A (ENSVVUG00000002248) #28	SERHL2 (ENSVVUG00000002262) #27	ENSVVUG00000002407 #29	TCF20 (ENSVVUG00000002422) #30	CYP2D6 (ENSVVUG00000002453) #32	NDUFA6 (ENSVVUG00000002468) #33	SMDT1 (ENSVVUG00000002486) #34	PHETA2 (ENSVVUG00000002493)	NAGA (ENSVVUG00000002502) #35	WBP2NL (ENSVVUG00000002508) #36	SEPT3 (ENSVVUG00000002589) #37
Caniformia_b	ANCESTRAL SPECIES	18	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00940000168861	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Mustelinae	ANCESTRAL SPECIES	4	ENSGT00940000162853	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Ferret	MODERN SPECIES	324	SHISAL1 (ENSMPUG00000016272) #7	PARVG (ENSMPUG00000016273) #8	PARVB (ENSMPUG00000016274) #9	SAMM50 (ENSMPUG00000016276) #10	PNPLA3 (ENSMPUG00000016277) #11	PNPLA5 (ENSMPUG00000016282) #12	SULT4A1 (ENSMPUG00000016283) #13	EFCAB6 (ENSMPUG00000016284) #14	MPPED1 (ENSMPUG00000016287) #15	SCUBE1 (ENSMPUG00000016291) #16	TTLL12 (ENSMPUG00000016293) #17	TSPO (ENSMPUG00000016296) #18	ENSMPUG00000016297 #19	ENSMPUG00000016298	TTLL1 (ENSMPUG00000016299) #21	PACSIN2 (ENSMPUG00000016300) #22	ARFGAP3 (ENSMPUG00000016301) #23	A4GALT (ENSMPUG00000019590) #24	CYB5R3 (ENSMPUG00000016303) #25	POLDIP3 (ENSMPUG00000016314) #26	RRP7A (ENSMPUG00000016315) #28	SERHL2 (ENSMPUG00000016316) #27	NFAM1 (ENSMPUG00000016322) #29	ENSMPUG00000016324	TCF20 (ENSMPUG00000016327) #30	CYP2D6 (ENSMPUG00000016330) #32	ENSMPUG00000016331	NDUFA6 (ENSMPUG00000016333) #33	PHETA2 (ENSMPUG00000019592)	NAGA (ENSMPUG00000016335) #35	WBP2NL (ENSMPUG00000016336) #36
American mink	MODERN SPECIES	105	PRR5 (ENSNVIG00000021468)	LDOCL (ENSNVIG00000021481)	SHISAL1 (ENSNVIG00000021490) #7	PARVG (ENSNVIG00000021504) #8	PARVB (ENSNVIG00000021558) #9	SAMM50 (ENSNVIG00000021681) #10	PNPLA3 (ENSNVIG00000021709) #11	PNPLA5 (ENSNVIG00000021728) #12	SULT4A1 (ENSNVIG00000021750) #13	EFCAB6 (ENSNVIG00000021759) #14	B7Z2S9 (ENSNVIG00000021788) #15	SCUBE1 (ENSNVIG00000021824) #16	TTLL12 (ENSNVIG00000021867) #17	TSPO (ENSNVIG00000021876) #18	TTLL1 (ENSNVIG00000021909) #21	PACSIN2 (ENSNVIG00000021957) #22	ARFGAP3 (ENSNVIG00000022001) #23	A4GALT (ENSNVIG00000022062) #24	CYB5R3 (ENSNVIG00000022070) #25	POLDIP3 (ENSNVIG00000022082) #26	RRP7A (ENSNVIG00000022090) #28	SERHL2 (ENSNVIG00000022102) #27	TCF20 (ENSNVIG00000022142) #30	CYP2D6 (ENSNVIG00000022155) #32	NDUFA6 (ENSNVIG00000022214) #33	SMDT1 (ENSNVIG00000022236) #34	PHETA2 (ENSNVIG00000022242)	NAGA (ENSNVIG00000022245) #35	WBP2NL (ENSNVIG00000022256) #36	ENSNVIG00000022271 #37	SMIM45 (ENSNVIG00000022293)
Ursidae	ANCESTRAL SPECIES	13	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00940000168861	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466.h #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Giant Panda	MODERN SPECIES	6	SHISAL1 (ENSAMEG00000009162) #7	ENSAMEG00000009164 #8	PARVB (ENSAMEG00000009181) #9	SAMM50 (ENSAMEG00000006654) #10	PNPLA3 (ENSAMEG00000006694) #11	PNPLA5 (ENSAMEG00000006720) #12	SULT4A1 (ENSAMEG00000006747) #13	EFCAB6 (ENSAMEG00000006750) #14	MPPED1 (ENSAMEG00000006778) #15	SCUBE1 (ENSAMEG00000006809) #16	TTLL12 (ENSAMEG00000006819) #17	TSPO (ENSAMEG00000006847) #18	MCAT (ENSAMEG00000028871) #19	ENSAMEG00000027855 #20	TTLL1 (ENSAMEG00000006861) #21	PACSIN2 (ENSAMEG00000006883) #22	ARFGAP3 (ENSAMEG00000006924) #23	A4GALT (ENSAMEG00000019959) #24	CYB5R3 (ENSAMEG00000028135) #25	POLDIP3 (ENSAMEG00000009522) #26	RRP7A (ENSAMEG00000009503) #28	ENSAMEG00000027626 #27	NFAM1 (ENSAMEG00000009486) #29	TCF20 (ENSAMEG00000009482) #30	CYP2D6 (ENSAMEG00000009440) #32	ENSAMEG00000009436	NDUFA6 (ENSAMEG00000009428) #33	SMDT1 (ENSAMEG00000009427) #34	PHETA2 (ENSAMEG00000019957)	NAGA (ENSAMEG00000009404) #35	WBP2NL (ENSAMEG00000009402) #36
Ursus	ANCESTRAL SPECIES	64	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00940000168861	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466.h #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Polar bear	MODERN SPECIES	248	PARVG (ENSUMAG00000019938) #8	PARVB (ENSUMAG00000019950) #9	SAMM50 (ENSUMAG00000019973) #10	PNPLA3 (ENSUMAG00000019982) #11	PNPLA5 (ENSUMAG00000019990) #12	SULT4A1 (ENSUMAG00000019995) #13	ENSUMAG00000020001	ENSUMAG00000020017 #14	MPPED1 (ENSUMAG00000020019) #15	SCUBE1 (ENSUMAG00000020077) #16	TTLL12 (ENSUMAG00000020307) #17	TSPO (ENSUMAG00000020330) #18	MCAT (ENSUMAG00000020333) #19	ENSUMAG00000020334 #20	TTLL1 (ENSUMAG00000020341) #21	PACSIN2 (ENSUMAG00000020346) #22	ARFGAP3 (ENSUMAG00000020354) #23	A4GALT (ENSUMAG00000020371) #24	CYB5R3 (ENSUMAG00000020374) #25	POLDIP3 (ENSUMAG00000020385) #26	RRP7A (ENSUMAG00000020394) #28	SERHL2 (ENSUMAG00000020399) #27	ENSUMAG00000020412 #29	TCF20 (ENSUMAG00000020422) #30	CYP2D6 (ENSUMAG00000020458) #32	ENSUMAG00000020572	NDUFA6 (ENSUMAG00000020583) #33	SMDT1 (ENSUMAG00000020585) #34	PHETA2 (ENSUMAG00000020587)	NAGA (ENSUMAG00000020591) #35	ENSUMAG00000020596 #36
American black bear	MODERN SPECIES	1137											TTLL12 (ENSUAMG00000007761) #17	TSPO (ENSUAMG00000007734) #18	MCAT (ENSUAMG00000007733) #19	ENSUAMG00000007729 #20	TTLL1 (ENSUAMG00000007725) #21	PACSIN2 (ENSUAMG00000007721) #22
Laurasiatheria_c	ANCESTRAL SPECIES	5	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Equus	ANCESTRAL SPECIES	21	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331.sb.a.a.a.a.a.b.b #32	ENSGT00940000153331.sb.b.a #32	ENSGT00940000153331.sb.a.a.a.a.a.b.a.a.a #32	ENSGT00940000153331.sb.a.a.a.a.a.b.a.a.b #32	ENSGT00940000153331.sb.a.a.a.a.b #32	ENSGT00500000045764	ENSGT00390000018898 #33
Donkey	MODERN SPECIES	11	SHISAL1 (ENSEASG00005021806) #7	PARVG (ENSEASG00005021810) #8	PARVB (ENSEASG00005021815) #9	SAMM50 (ENSEASG00005021837) #10	PNPLA3 (ENSEASG00005021868) #11	PNPLA5 (ENSEASG00005021872) #12	SULT4A1 (ENSEASG00005021874) #13	EFCAB6 (ENSEASG00005021875) #14	MPPED1 (ENSEASG00005000122) #15	SCUBE1 (ENSEASG00005000241) #16	TTLL12 (ENSEASG00005000856) #17	TSPO (ENSEASG00005000863) #18	MCAT (ENSEASG00005000869) #19	ENSEASG00005000875 #20	TTLL1 (ENSEASG00005000883) #21	PACSIN2 (ENSEASG00005000891) #22	ARFGAP3 (ENSEASG00005000899) #23	A4GALT (ENSEASG00005029706) #24	CYB5R3 (ENSEASG00005000784) #25	POLDIP3 (ENSEASG00005000795) #26	RRP7A (ENSEASG00005000804) #28	ENSEASG00005000811 #27	ENSEASG00005026311 #29	TCF20 (ENSEASG00005000835) #30	ENSEASG00005023712 #32	ENSEASG00005034674 #32	ENSEASG00005029165 #32	ENSEASG00005023665 #32	ENSEASG00005023971 #32	ENSEASG00005034514 #32	ENSEASG00005032019 #32
Horse	MODERN SPECIES	20	RTL6 (ENSECAG00000001294)	SHISAL1 (ENSECAG00000006269) #7	PARVB (ENSECAG00000008893) #9	SAMM50 (ENSECAG00000015700) #10	PNPLA3 (ENSECAG00000014604) #11	PNPLA5 (ENSECAG00000013596) #12	SULT4A1 (ENSECAG00000032875) #13	EFCAB6 (ENSECAG00000007792) #14	MPPED1 (ENSECAG00000020812) #15	SCUBE1 (ENSECAG00000000951) #16	TTLL12 (ENSECAG00000021781) #17	TSPO (ENSECAG00000021765) #18	MCAT (ENSECAG00000019004) #19	ENSECAG00000018135 #20	TTLL1 (ENSECAG00000012788) #21	PACSIN2 (ENSECAG00000011667) #22	ARFGAP3 (ENSECAG00000023901) #23	A4GALT (ENSECAG00000019753) #24	CYB5R3 (ENSECAG00000008452) #25	POLDIP3 (ENSECAG00000018350) #26	RRP7 (ENSECAG00000015168) #28	ENSECAG00000010579 #27	NFAM1 (ENSECAG00000009865) #29	TCF20 (ENSECAG00000007477) #30	CYP2D84 (ENSECAG00000039768) #32	ENSECAG00000034175 #32	CYP2D50 (ENSECAG00000040369) #32	ENSECAG00000028448 #32	ENSECAG00000058336	ENSECAG00000060238	ENSECAG00000052538 #32
Chiroptera	ANCESTRAL SPECIES	23	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00530000064453 #20	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Megabat	MODERN SPECIES	3638													MCAT (ENSPVAG00000009679) #19	ENSPVAG00000009678 #20	TTLL1 (ENSPVAG00000009675) #21	PACSIN2 (ENSPVAG00000009673) #22	ARFGAP3 (ENSPVAG00000009669) #23
Microchiroptera	ANCESTRAL SPECIES	8	ENSGT00940000162853	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Microbat	MODERN SPECIES	1703														ENSMLUG00000010212 #21	ENSMLUG00000022912	PACSIN2 (ENSMLUG00000004611) #22	ARFGAP3 (ENSMLUG00000004600) #23
Greater horseshoe bat	MODERN SPECIES	1	SHISAL1 (ENSRFEG00010012179) #7	PARVG (ENSRFEG00010012211) #8	PARVB (ENSRFEG00010012296) #9	SAMM50 (ENSRFEG00010012414) #10	PNPLA3 (ENSRFEG00010012458) #11	PNPLA5 (ENSRFEG00010012479) #12	SULT4A1 (ENSRFEG00010012503) #13	EFCAB6 (ENSRFEG00010012566) #14	ENSRFEG00010013037	MPPED1 (ENSRFEG00010013056) #15	SCUBE1 (ENSRFEG00010013133) #16	TTLL12 (ENSRFEG00010013319) #17	TSPO (ENSRFEG00010013344) #18	MCAT (ENSRFEG00010013419) #19	TTLL1 (ENSRFEG00010013484) #21	PACSIN2 (ENSRFEG00010013614) #22	ENSRFEG00010013743	ARFGAP3 (ENSRFEG00010013785) #23	A4GALT (ENSRFEG00010013906) #24	CYB5R3 (ENSRFEG00010013917) #25	POLDIP3 (ENSRFEG00010014019) #26	RRP7A (ENSRFEG00010014301) #28	SERHL2 (ENSRFEG00010014362) #27	NFAM1 (ENSRFEG00010014764) #29	TCF20 (ENSRFEG00010014819) #30	CYP2D6 (ENSRFEG00010014956) #32	NDUFA6 (ENSRFEG00010015451) #33	SMDT1 (ENSRFEG00010015560) #34	PHETA2 (ENSRFEG00010015616)	NAGA (ENSRFEG00010015637) #35	ENSRFEG00010015682 #36
Atlantogenata	ANCESTRAL SPECIES	36	ENSGT00940000162853	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715.p #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b.u #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00940000158004 #37
Xenarthra	ANCESTRAL SPECIES	1613															ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22
Armadillo	MODERN SPECIES	2910															TTLL1 (ENSDNOG00000032783) #21	ENSDNOG00000044349 #22
Afrotheria	ANCESTRAL SPECIES	33	ENSGT00530000063981.a	ENSGT00940000162853	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715.p #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b.u #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00940000158004 #37	ENSGT00390000017504
Tenrec	MODERN SPECIES	333																ENSETEG00000005189 #22
Afrotheria_a	ANCESTRAL SPECIES	33	ENSGT00530000063981.a	ENSGT00940000162853	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715.p #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b.u #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489 #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00940000158004 #37	ENSGT00390000017504
Elephant	MODERN SPECIES	544	PRR5 (ENSLAFG00000029701)	RTL6 (ENSLAFG00000004390)	SHISAL1 (ENSLAFG00000004474) #7	PARVG (ENSLAFG00000017395) #8	SAMM50 (ENSLAFG00000001762) #10	PNPLA3 (ENSLAFG00000014754) #11	PNPLA5 (ENSLAFG00000010207) #12	SULT4A1 (ENSLAFG00000009664) #13	EFCAB6 (ENSLAFG00000009212) #14	MPPED1 (ENSLAFG00000022821) #15	SCUBE1 (ENSLAFG00000008128) #16	TTLL12 (ENSLAFG00000008120) #17	TSPO (ENSLAFG00000001989) #18	MCAT (ENSLAFG00000021666) #19	TTLL1 (ENSLAFG00000016455) #21	PACSIN2 (ENSLAFG00000006768) #22	ARFGAP3 (ENSLAFG00000006764) #23	A4GALT (ENSLAFG00000007141) #24	CYB5R3 (ENSLAFG00000014856) #25	POLDIP3 (ENSLAFG00000014901) #26	RRP7A (ENSLAFG00000012447) #28	ENSLAFG00000028823 #32	ENSLAFG00000031162	NFAM1 (ENSLAFG00000020755) #29	TCF20 (ENSLAFG00000011602) #30	ENSLAFG00000030928 #32	ENSLAFG00000029829	NDUFA6 (ENSLAFG00000006872) #33	SMDT1 (ENSLAFG00000006870) #34	PHETA2 (ENSLAFG00000006869)	NAGA (ENSLAFG00000013748) #35
Hyrax	MODERN SPECIES	205																PACSIN2 (ENSPCAG00000012782) #22
Marsupialia	ANCESTRAL SPECIES	11	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00940000153185.a.a.a #16	ENSGT00390000007681.b.a.b #15	ENSGT00390000013629 #14	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT01030000235072	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00530000063825.A.c	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00940000167062	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489.e #34	ENSGT00940000162686
Marsupialia_b	ANCESTRAL SPECIES	13	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00940000153185.a.a.a #16	ENSGT00390000007681.b.a.b #15	ENSGT00390000013629 #14	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT01030000235072	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00530000063825.A.c	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00940000167062	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00500000045764	ENSGT00390000018898 #33	ENSGT00390000017489.e #34	ENSGT00940000162686
Diprotodontia	ANCESTRAL SPECIES	8	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00940000153185.a.a.a #16	ENSGT00390000007681.b.a.b #15	ENSGT00390000013629 #14	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT01030000235072	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00530000063825.A.c	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00390000018898 #33	ENSGT00390000017489.e #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
Diprotodontia_a	ANCESTRAL SPECIES	8	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000162116 #12	ENSGT00940000158662 #13	ENSGT00940000153185.a.a.a #16	ENSGT00390000007681.b.a.b #15	ENSGT00390000013629 #14	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT01030000235072	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00530000063825.A.c	ENSGT00940000153962.b #25	ENSGT00390000018868.A #26	ENSGT00390000018482 #28	ENSGT00530000063960 #27	ENSGT00390000000787 #29	ENSGT00940000157896 #30	ENSGT00940000153331 #32	ENSGT00390000018898 #33	ENSGT00390000017489.e #34	ENSGT00940000162686	ENSGT00390000008751.a #35	ENSGT00530000063718.a.b #36
koala	MODERN SPECIES	13	SHISAL1 (ENSPCIG00000007811) #7	ENSPCIG00000007814 #8	PARVB (ENSPCIG00000015090) #9	SAMM50 (ENSPCIG00000018526) #10	PNPLA3 (ENSPCIG00000031779) #11	ENSPCIG00000018523 #12	SULT4A1 (ENSPCIG00000018520) #13	SCUBE1 (ENSPCIG00000018369) #16	MPPED1 (ENSPCIG00000034684) #15	EFCAB6 (ENSPCIG00000006305) #14	TTLL12 (ENSPCIG00000009662) #17	TSPO (ENSPCIG00000009661) #18	MCAT (ENSPCIG00000009660) #19	ENSPCIG00000031192	TTLL1 (ENSPCIG00000004018) #21	PACSIN2 (ENSPCIG00000019312) #22	ARFGAP3 (ENSPCIG00000019314) #23	A4GALT (ENSPCIG00000006631) #24	ENSPCIG00000006625	CYB5R3 (ENSPCIG00000026192) #25	POLDIP3 (ENSPCIG00000026194) #26	RRP7A (ENSPCIG00000026195) #28	ENSPCIG00000026196 #27	ENSPCIG00000026197 #29	TCF20 (ENSPCIG00000026198) #30	CYP2D6 (ENSPCIG00000026201) #32	ENSPCIG00000026203	ENSPCIG00000022790 #33	SMDT1 (ENSPCIG00000022794) #34	PHETA2 (ENSPCIG00000022802)	NAGA (ENSPCIG00000022807) #35
Common wonbat	MODERN SPECIES	657	ENSVURG00010006167	SHISAL1 (ENSVURG00010006200) #7	PARVG (ENSVURG00010006206) #8	PARVB (ENSVURG00010006255) #9	SAMM50 (ENSVURG00010006929) #10	PNPLA3 (ENSVURG00010006954) #11	ENSVURG00010006970 #12	SULT4A1 (ENSVURG00010006983) #13	SCUBE1 (ENSVURG00010007069) #16	MPPED1 (ENSVURG00010007782) #15	ENSVURG00010007797 #14	TTLL12 (ENSVURG00010007827) #17	TSPO (ENSVURG00010007855) #18	MCAT (ENSVURG00010007863) #19	TTLL1 (ENSVURG00010007871) #21	PACSIN2 (ENSVURG00010007894) #22	ARFGAP3 (ENSVURG00010007912) #23	A4GALT (ENSVURG00010007923) #24	ENSVURG00010007927	CYB5R3 (ENSVURG00010007936) #25	POLDIP3 (ENSVURG00010007950) #26	RRP7A (ENSVURG00010007965) #28	ENSVURG00010007983 #27	ENSVURG00010008002 #29	TCF20 (ENSVURG00010008011) #30
Wallaby	MODERN SPECIES	888																PACSIN2 (ENSMEUG00000012343) #22
Tasmanian devil	MODERN SPECIES	4	ENSSHAG00000012446 #37	ENSSHAG00000030112 #36	PHETA2 (ENSSHAG00000027807)	NDUFA6 (ENSSHAG00000027125) #33	ENSSHAG00000012743	ENSSHAG00000021522 #32	TCF20 (ENSSHAG00000012959) #30	ENSSHAG00000026375 #29	ENSSHAG00000031424	SERHL2 (ENSSHAG00000022352) #27	POLDIP3 (ENSSHAG00000026608) #26	CYB5R3 (ENSSHAG00000026045) #25	ENSSHAG00000025340	ENSSHAG00000028796 #24	ENSSHAG00000005037 #21	ENSSHAG00000027099 #22	ENSSHAG00000003065 #23	ENSSHAG00000031564 #21	ENSSHAG00000029372	MCAT (ENSSHAG00000003471) #19	TSPO (ENSSHAG00000025509) #18	ENSSHAG00000001598 #17	ENSSHAG00000009599 #14	ENSSHAG00000008891 #15	ENSSHAG00000005626 #16	ENSSHAG00000004543 #13	ENSSHAG00000004007 #12	PNPLA3 (ENSSHAG00000002603) #11	SAMM50 (ENSSHAG00000001501) #10	PARVB (ENSSHAG00000003780) #9	PARVG (ENSSHAG00000000574) #8
Platypus	MODERN SPECIES	5	PRR5 (ENSOANG00000048267)	SHISAL1 (ENSOANG00000004190) #7	PARVG (ENSOANG00000050082) #8	PARVB (ENSOANG00000015231) #9	SAMM50 (ENSOANG00000015232) #10	ENSOANG00000030717 #12	ENSOANG00000043233 #12	SULT4A1 (ENSOANG00000042734) #13	ENSOANG00000028635 #14	ENSOANG00000008782 #15	SCUBE1 (ENSOANG00000045735) #16	TTLL12 (ENSOANG00000021608) #17	ENSOANG00000044048	MCAT (ENSOANG00000015880) #19	TTLL1 (ENSOANG00000015127) #21	PACSIN2 (ENSOANG00000046272) #22	ARFGAP3 (ENSOANG00000005849) #23	A4GALT (ENSOANG00000008967) #24	ENSOANG00000038441	CYB5R3 (ENSOANG00000038457) #25	ENSOANG00000042312	LMF2 (ENSOANG00000038368)	SCO2 (ENSOANG00000045997)	TYMP (ENSOANG00000028714)	ODF3B (ENSOANG00000036484)	ENSOANG00000046539	ENSOANG00000035177	CPT1B (ENSOANG00000030397)	ENSOANG00000049088	MAPK8IP2 (ENSOANG00000046713)	ENSOANG00000047870
Sauria	ANCESTRAL SPECIES	4	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000158662 #13	ENSGT00940000167968	ENSGT00960000189257	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT01030000235072	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00530000063825.A.c	ENSGT00940000153962.b #25	ENSGT00390000005178	ENSGT01050000244951.a.a	ENSGT00940000169031	ENSGT00940000160423	ENSGT00940000153544.b	ENSGT00940000162660.a	ENSGT00390000014557	ENSGT00390000008702	ENSGT00390000018003.b	ENSGT00390000002793	ENSGT00940000167397.b
Archelosauria	ANCESTRAL SPECIES	3	ENSGT00530000063981.a	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT01030000235072	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00530000063825.A.c	ENSGT00940000153962.b #25	ENSGT00390000005178	ENSGT01050000244951.a.a	ENSGT00940000160423	ENSGT00940000153544.b	ENSGT00940000162660.a	ENSGT00390000014557	ENSGT00390000008702	ENSGT00390000018003.b	ENSGT00390000002793	ENSGT00940000156039	ENSGT00390000007747
Archosauria	ANCESTRAL SPECIES	4	ENSGT00530000063981.a	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT01030000235072	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00530000063825.A.c	ENSGT00940000153962.b #25	ENSGT00390000005178	ENSGT01050000244951.a.a	ENSGT00940000160423	ENSGT00940000153544.b	ENSGT00390000014557	ENSGT00390000008702	ENSGT00390000018003.b	ENSGT00390000002793	ENSGT00940000156039	ENSGT00390000007747	ENSGT00940000161014
Aves	ANCESTRAL SPECIES	1	ENSGT00530000063981.a	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT01030000235072	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00530000063825.A.c	ENSGT00940000153962.b #25	ENSGT00390000005178	ENSGT01050000244951.a.a	ENSGT00940000160423	ENSGT00940000153544.b	ENSGT00390000014557	ENSGT00390000008702	ENSGT00390000018003.b	ENSGT00390000002793	ENSGT00940000156039	ENSGT00390000007747	ENSGT00940000161014
Neognathae	ANCESTRAL SPECIES	3	ENSGT00530000063981.a	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT01030000235072	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00530000063825.A.c	ENSGT00940000153962.b #25	ENSGT00390000005178	ENSGT01050000244951.a.a	ENSGT00940000160423	ENSGT00940000153544.b	ENSGT00390000014557	ENSGT00390000008702	ENSGT00390000018003.b	ENSGT00390000002793	ENSGT00940000156039	ENSGT00390000007747	ENSGT00940000161014
Neognathae_b	ANCESTRAL SPECIES	2	ENSGT00940000160758	ENSGT00530000063981.a	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000158662 #13	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT01030000235072	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00530000063825.A.c	ENSGT00940000153962.b #25	ENSGT00390000005178	ENSGT01050000244951.a.a	ENSGT00940000160423	ENSGT00940000153544.b	ENSGT00390000014557	ENSGT00390000008702	ENSGT00390000018003.b	ENSGT00390000002793	ENSGT00940000156039	ENSGT00390000007747	ENSGT00940000161014
Neognathae_c	ANCESTRAL SPECIES		ENSGT00530000063981.a	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT01030000235072	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00530000063825.A.c	ENSGT00940000153962.b #25	ENSGT00390000005178	ENSGT01050000244951.a.a	ENSGT00940000160423	ENSGT00940000153544.b	ENSGT00390000014557	ENSGT00390000008702	ENSGT00390000018003.b	ENSGT00390000002793	ENSGT00940000156039	ENSGT00390000007747	ENSGT00940000161014
Golden eagle	MODERN SPECIES	8	ARHGAP8 (ENSACCG00020008778)	PRR5 (ENSACCG00020008792)	SHISAL1 (ENSACCG00020008821) #7	PARVG (ENSACCG00020008841) #8	PARVB (ENSACCG00020008883) #9	SAMM50 (ENSACCG00020009018) #10	PNPLA3 (ENSACCG00020009077) #11	SULT4A1 (ENSACCG00020009096) #13	MPPED1 (ENSACCG00020009104) #15	SCUBE1 (ENSACCG00020009137) #16	TTLL12 (ENSACCG00020011487) #17	TSPO (ENSACCG00020011512) #18	MCAT (ENSACCG00020011528) #19	ENSACCG00020011547	TTLL1 (ENSACCG00020011565) #21	PACSIN2 (ENSACCG00020011622) #22	ARFGAP3 (ENSACCG00020011675) #23	A4GALT (ENSACCG00020011775) #24	ENSACCG00020011794	CYB5R3 (ENSACCG00020011815) #25	REP15 (ENSACCG00020011847)	PPFIBP1 (ENSACCG00020012051)	BMAL2 (ENSACCG00020012265)	STK38L (ENSACCG00020012370)	MED21 (ENSACCG00020012405)	TM7SF3 (ENSACCG00020012433)
Kakapo	MODERN SPECIES	20	SHISAL1 (ENSSHBG00005006338) #7	PARVG (ENSSHBG00005006366) #8	PARVB (ENSSHBG00005006411) #9	SAMM50 (ENSSHBG00005006427) #10	PNPLA3 (ENSSHBG00005006443) #11	SULT4A1 (ENSSHBG00005006457) #13	ENSSHBG00005006479	ENSSHBG00005006492 #14	MPPED1 (ENSSHBG00005006512) #15	SCUBE1 (ENSSHBG00005006884) #16	TTLL12 (ENSSHBG00005013477) #17	TSPO (ENSSHBG00005013495) #18	MCAT (ENSSHBG00005013512) #19	ENSSHBG00005013522	TTLL1 (ENSSHBG00005013540) #21	PACSIN2 (ENSSHBG00005013557) #22	ARFGAP3 (ENSSHBG00005013602) #23	ENSSHBG00005013609 #24	ENSSHBG00005013616 #24	ENSSHBG00005013622	CYB5R3 (ENSSHBG00005013634) #25	PPFIBP1 (ENSSHBG00005013672)	ENSSHBG00005013692	BMAL2 (ENSSHBG00005013707)	STK38L (ENSSHBG00005013754)	MED21 (ENSSHBG00005013777)	TM7SF3 (ENSSHBG00005013789)	FGFR1OP2 (ENSSHBG00005013801)	INTS13 (ENSSHBG00005013819)	ITPR2 (ENSSHBG00005013963)	SSPN (ENSSHBG00005014543)
Passeriformes	ANCESTRAL SPECIES	3	ENSGT00940000164299	ENSGT00390000006865	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000158662 #13	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT01030000235072	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000159340	ENSGT00390000009978	ENSGT00940000157871	ENSGT00940000156876	ENSGT00730000111328	ENSGT00940000163137	ENSGT00390000004237	ENSGT00940000156680.b.b	ENSGT00990000203615.a.a.b	ENSGT00940000153525	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00510000047981.c #24	ENSGT00530000063825.A.c
Passeriformes_d	ANCESTRAL SPECIES	3	ENSGT00940000164299	ENSGT00390000006865	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000158662 #13	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT01030000235072	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000159340	ENSGT00390000009978	ENSGT00940000157871	ENSGT00940000156876	ENSGT00730000111328	ENSGT00940000163137	ENSGT00390000004237	ENSGT00940000156680.b.b	ENSGT00990000203615.a.a.b	ENSGT00940000153525	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00510000047981.c #24	ENSGT00530000063825.A.c
Passeriformes_g	ANCESTRAL SPECIES	4	ENSGT00940000164299	ENSGT00390000006865	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000158662 #13	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT01030000235072	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000159340	ENSGT00390000009978	ENSGT00940000157871	ENSGT00940000156876	ENSGT00730000111328	ENSGT00940000163137	ENSGT00390000004237	ENSGT00940000156680.b.b	ENSGT00990000203615.a.a.b	ENSGT00940000153525	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00510000047981.c #24	ENSGT00530000063825.A.c
Medium ground finch	MODERN SPECIES	129	ENSGFOG00000013397	NDUFA9 (ENSGFOG00000013404)	SHISAL1 (ENSGFOG00000013442) #7	PARVG (ENSGFOG00000013447) #8	PARVB (ENSGFOG00000013464) #9	SAMM50 (ENSGFOG00000013472) #10	PNPLA3 (ENSGFOG00000013481) #11	SULT4A1 (ENSGFOG00000013483) #13	MPPED1 (ENSGFOG00000013486) #15	SCUBE1 (ENSGFOG00000013503) #16	TTLL12 (ENSGFOG00000013582) #17	TSPO (ENSGFOG00000013587) #18	MCAT (ENSGFOG00000013589) #19	ENSGFOG00000013591	TTLL1 (ENSGFOG00000013593) #21	PACSIN2 (ENSGFOG00000013599) #22
Passeroidea	ANCESTRAL SPECIES	3	ENSGT00940000164299	ENSGT00390000006865	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000158662 #13	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT01030000235072	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000159340	ENSGT00390000009978	ENSGT00940000157871	ENSGT00940000156876	ENSGT00730000111328	ENSGT00940000163137	ENSGT00390000004237	ENSGT00940000156680.b.b	ENSGT00990000203615.a.a.b	ENSGT00940000153525	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00530000063722.a	ENSGT00510000047981.c #24	ENSGT00530000063825.A.c
Zebra finch	MODERN SPECIES	11	KCNA1 (ENSTGUG00000024687)	NDUFA9 (ENSTGUG00000028710)	SHISAL1 (ENSTGUG00000020274) #7	PARVG (ENSTGUG00000011975) #8	PARVB (ENSTGUG00000011982) #9	SAMM50 (ENSTGUG00000011988) #10	PNPLA3 (ENSTGUG00000011999) #11	SULT4A1 (ENSTGUG00000012001) #13	MPPED1 (ENSTGUG00000012007) #15	SCUBE1 (ENSTGUG00000012016) #16	TTLL12 (ENSTGUG00000012025) #17	TSPO (ENSTGUG00000012033) #18	MCAT (ENSTGUG00000021072) #19	ENSTGUG00000022797	TTLL1 (ENSTGUG00000012037) #21	PACSIN2 (ENSTGUG00000012038) #22	SYCE3 (ENSTGUG00000020816)	YBX3 (ENSTGUG00000012047)	STYK1 (ENSTGUG00000012052)	ENSTGUG00000020496	GABARAPL1 (ENSTGUG00000029032)	TMEM52B (ENSTGUG00000025131)	ENSTGUG00000012060	CMAS (ENSTGUG00000012063)	ABCC9 (ENSTGUG00000012068)	KCNJ8 (ENSTGUG00000027226)	LDHB (ENSTGUG00000025396)	GYS2 (ENSTGUG00000012106)	SPX (ENSTGUG00000012121)	IRAG2 (ENSTGUG00000012124)	ENSTGUG00000026261 #24
Common canary	MODERN SPECIES	26	NDUFA9 (ENSSCAG00000008239)	SHISAL1 (ENSSCAG00000008255) #7	ENSSCAG00000008263	PARVG (ENSSCAG00000008275) #8	PARVB (ENSSCAG00000008303) #9	SAMM50 (ENSSCAG00000008323) #10	PNPLA3 (ENSSCAG00000008335) #11	SULT4A1 (ENSSCAG00000008339) #13	MPPED1 (ENSSCAG00000008345) #15	SCUBE1 (ENSSCAG00000008411) #16	TTLL12 (ENSSCAG00000008561) #17	TSPO (ENSSCAG00000008659) #18	MCAT (ENSSCAG00000008662) #19	ENSSCAG00000008665	TTLL1 (ENSSCAG00000008671) #21	PACSIN2 (ENSSCAG00000008688) #22	YBX3 (ENSSCAG00000008708)	SYCE3 (ENSSCAG00000008716)	STYK1 (ENSSCAG00000008718)	GABARAPL1 (ENSSCAG00000008719)	TMEM52B (ENSSCAG00000008721)	ENSSCAG00000008728	CMAS (ENSSCAG00000008739)	ABCC9 (ENSSCAG00000008765)	KCNJ8 (ENSSCAG00000008826)	LDHB (ENSSCAG00000008831)	GYS2 (ENSSCAG00000008867)	SPX (ENSSCAG00000009153)	IRAG2 (ENSSCAG00000009163)	A4GALT (ENSSCAG00000009175) #24	ENSSCAG00000009188
Flycatcher	MODERN SPECIES	10	ENSFALG00000024840	KCNA1 (ENSFALG00000014875)	NTF3 (ENSFALG00000006590)	ENSFALG00000006591	PARVG (ENSFALG00000006613) #8	PARVB (ENSFALG00000026291) #9	SAMM50 (ENSFALG00000006621) #10	PNPLA3 (ENSFALG00000006626) #11	SULT4A1 (ENSFALG00000006642) #13	MPPED1 (ENSFALG00000026432) #15	SCUBE1 (ENSFALG00000006655) #16	TTLL12 (ENSFALG00000006664) #17	TSPO (ENSFALG00000023447) #18	ENSFALG00000027054	TTLL1 (ENSFALG00000006685) #21	PACSIN2 (ENSFALG00000006688) #22	ENSFALG00000029019	ENSFALG00000025259	ENSFALG00000003654	ENSFALG00000003648	ENSFALG00000003642	ENSFALG00000003622	CMAS (ENSFALG00000003601)	ABCC9 (ENSFALG00000003583)	KCNJ8 (ENSFALG00000027140)	LDHB (ENSFALG00000024585)	GYS2 (ENSFALG00000003557)	SPX (ENSFALG00000003552)	ENSFALG00000025294	ENSFALG00000015090 #24	ENSFALG00000003966 #24
Great tit	MODERN SPECIES	10	ENSPMJG00000009407	DENND2A (ENSPMJG00000009410)	ADCK2 (ENSPMJG00000009417)	ENSPMJG00000009447	NDUFB2 (ENSPMJG00000009449)	BRAF (ENSPMJG00000009455)	MRPS33 (ENSPMJG00000009457)	TMEM178B (ENSPMJG00000009458)	MPPED1 (ENSPMJG00000009477) #15	SCUBE1 (ENSPMJG00000009504) #16	TTLL12 (ENSPMJG00000009514) #17	TSPO (ENSPMJG00000009518) #18	MCAT (ENSPMJG00000009519) #19	ENSPMJG00000009532	TTLL1 (ENSPMJG00000009534) #21	PACSIN2 (ENSPMJG00000009538) #22	YBX3 (ENSPMJG00000009615)	SYCE3 (ENSPMJG00000009616)	STYK1 (ENSPMJG00000009617)	GABARAPL1 (ENSPMJG00000009618)	SULT4A1 (ENSPMJG00000009635) #13	PNPLA3 (ENSPMJG00000009640) #11	SAMM50 (ENSPMJG00000009643) #10	PARVB (ENSPMJG00000009649) #9	PARVG (ENSPMJG00000009653) #8	ENSPMJG00000009654	SHISAL1 (ENSPMJG00000009675) #7	NDUFA9 (ENSPMJG00000009677)	ENSPMJG00000009679	KCNA1 (ENSPMJG00000009689)	ENSPMJG00000009694
Galloanserae	ANCESTRAL SPECIES	3	ENSGT00530000063981.a	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT01030000235072	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000005178	ENSGT01050000244951.a.a	ENSGT00940000160423	ENSGT00940000153544.b	ENSGT00390000014557	ENSGT00390000008702	ENSGT00390000018003.b	ENSGT00390000002793	ENSGT00940000156039	ENSGT00390000007747	ENSGT00940000161014	ENSGT00950000182839.B.a.a
Phasianidae	ANCESTRAL SPECIES		ENSGT00530000063981.a	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT01030000235072	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT01050000244951.a.a	ENSGT00940000160423	ENSGT00940000153544.b	ENSGT00390000014557	ENSGT00390000008702	ENSGT00390000018003.b	ENSGT00390000002793	ENSGT00940000156039	ENSGT00390000007747	ENSGT00940000161014	ENSGT00950000182839.B.a.a	ENSGT00940000155871
Japanese quail	MODERN SPECIES		ENSCJPG00005016127	SHISAL1 (ENSCJPG00005016124) #7	PARVB (ENSCJPG00005016049) #9	SAMM50 (ENSCJPG00005015946) #10	PNPLA3 (ENSCJPG00005015945) #11	SULT4A1 (ENSCJPG00005015944) #13	ENSCJPG00005015934 #14	ENSCJPG00005015933 #15	MPPED1 (ENSCJPG00005015932) #15	SCUBE1 (ENSCJPG00005015651) #16	TTLL12 (ENSCJPG00005015615) #17	TSPO (ENSCJPG00005015614) #18	MCAT (ENSCJPG00005015598) #19	ENSCJPG00005015597	TTLL1 (ENSCJPG00005015596) #21	PACSIN2 (ENSCJPG00005015563) #22	ENSCJPG00005015562 #23	ENSCJPG00005015561 #23	A4GALT (ENSCJPG00005015560) #24	CYB5R3 (ENSCJPG00005015559) #25	PPFIBP1 (ENSCJPG00005014207)	BMAL2 (ENSCJPG00005014204)	STK38L (ENSCJPG00005014203)	MED21 (ENSCJPG00005014200)	TM7SF3 (ENSCJPG00005014199)	FGFR1OP2 (ENSCJPG00005014198)	INTS13 (ENSCJPG00005014197)	ENSCJPG00005014196	ITPR2 (ENSCJPG00005003455)	SSPN (ENSCJPG00005003282)	BHLHE41 (ENSCJPG00005003277)
Phasianidae_b	ANCESTRAL SPECIES		ENSGT00530000063981.a	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT01030000235072	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000157452.s.a.c.b	ENSGT00530000063825.A.c	ENSGT00940000153962.b #25	ENSGT01050000244951.a.a	ENSGT00940000160423	ENSGT00940000153544.b	ENSGT00390000014557	ENSGT00390000008702	ENSGT00390000018003.b	ENSGT00390000002793	ENSGT00940000156039	ENSGT00390000007747	ENSGT00940000161014
Chicken	MODERN SPECIES		PRR5 (ENSGALG00010013360)	KIAA1644 (ENSGALG00010013343) #7	PARVG (ENSGALG00010013324) #8	PARVB (ENSGALG00010013301) #9	SAMM50 (ENSGALG00010013278) #10	PNPLA3 (ENSGALG00010013267) #11	SULT4A1 (ENSGALG00010013242) #13	ENSGALG00010011562 #14	MPPED1 (ENSGALG00010011998) #15	SCUBE1 (ENSGALG00010011981) #16	TTLL12 (ENSGALG00010011943) #17	TSPO (ENSGALG00010011930) #18	MCAT (ENSGALG00010011916) #19	BIK (ENSGALG00010011907)	TTLL1 (ENSGALG00010012193) #21	PACSIN2 (ENSGALG00010012175) #22	ARFGAP3 (ENSGALG00010012147) #23	ENSGALG00010013176	ENSGALG00010013167	A4GALT (ENSGALG00010012867) #24	PPFIBP1 (ENSGALG00010013123)	ARNTL2 (ENSGALG00010012985)	STK38L (ENSGALG00010012896)	MED21 (ENSGALG00010014861)	TM7SF3 (ENSGALG00010014839)	FGFR1OP2 (ENSGALG00010014748)	INTS13 (ENSGALG00010014728)	ENSGALG00010014697	ITPR2 (ENSGALG00010014477)	SSPN (ENSGALG00010014361)	BHLHE41 (ENSGALG00010014338)
Turkey	MODERN SPECIES		ENSMGAG00000013287	ENSMGAG00000013279	ENSMGAG00000021223	ENSMGAG00000013277	ENSMGAG00000022767	ENSMGAG00000015967	ENSMGAG00000013272	ENSMGAG00000018727	ENSMGAG00000013264	ENSMGAG00000019591	ENSMGAG00000013807	ENSMGAG00000013808	ENSMGAG00000013806	ENSMGAG00000013805	ENSMGAG00000013804 #7	PACSIN2 (ENSMGAG00000013743) #22	ENSMGAG00000013745 #23	A4GALT (ENSMGAG00000015995) #24	ENSMGAG00000013753	ENSMGAG00000013754	ENSMGAG00000013756 #25	PPFIBP1 (ENSMGAG00000013758)	BMAL2 (ENSMGAG00000013735)	STK38L (ENSMGAG00000013742)	MED21 (ENSMGAG00000013707)	TM7SF3 (ENSMGAG00000013710)	FGFR1OP2 (ENSMGAG00000013712)	INTS13 (ENSMGAG00000013714)	ITPR2 (ENSMGAG00000013722)	SSPN (ENSMGAG00000013734)	ENSMGAG00000013685
Anatidae	ANCESTRAL SPECIES	8	ENSGT00530000063981.a	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000158662 #13	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT01030000235072	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00940000153962.b #25	ENSGT00390000005178	ENSGT01050000244951.a.a	ENSGT00940000160423	ENSGT00940000153544.b	ENSGT00390000014557	ENSGT00390000008702	ENSGT00390000018003.b	ENSGT00390000002793	ENSGT00940000156039	ENSGT00390000007747	ENSGT00940000161014	ENSGT00950000182839.B.a.a
Duck	MODERN SPECIES		ENSAPLG00000029850	ENSAPLG00000019727	PARVG (ENSAPLG00000003412) #8	ENSAPLG00000020888	SAMM50 (ENSAPLG00000002728) #10	PNPLA3 (ENSAPLG00000002630) #11	SULT4A1 (ENSAPLG00000002493) #13	ENSAPLG00000025133 #14	MPPED1 (ENSAPLG00000013113) #15	SCUBE1 (ENSAPLG00000013297) #16	TTLL12 (ENSAPLG00000008852) #17	TSPO (ENSAPLG00000008915) #18	MCAT (ENSAPLG00000008917) #19	ENSAPLG00000008918	TTLL1 (ENSAPLG00000009209) #21	PACSIN2 (ENSAPLG00000009134) #22	ENSAPLG00000023309	ENSAPLG00000023088 #23	ENSAPLG00000014423 #23	A4GALT (ENSAPLG00000001237) #24	ENSAPLG00000021401	CYB5R3 (ENSAPLG00000009751) #25	REP15 (ENSAPLG00000001232)	ENSAPLG00000009279	ENSAPLG00000025790	BMAL2 (ENSAPLG00000008758)	STK38L (ENSAPLG00000008495)	MED21 (ENSAPLG00000017333)	ENSAPLG00000028939	TM7SF3 (ENSAPLG00000008163)	FGFR1OP2 (ENSAPLG00000007905)
Pink-footed goose	MODERN SPECIES	235									MPPED1 (ENSABRG00000009103) #15	SCUBE1 (ENSABRG00000008921) #16	TTLL12 (ENSABRG00000008846) #17	TSPO (ENSABRG00000008814) #18	MCAT (ENSABRG00000008755) #19	ENSABRG00000008742	TTLL1 (ENSABRG00000008733) #21	PACSIN2 (ENSABRG00000008709) #22	ARFGAP3 (ENSABRG00000008695) #23	A4GALT (ENSABRG00000008681) #24	CYB5R3 (ENSABRG00000008517) #25	REP15 (ENSABRG00000008500)	PPFIBP1 (ENSABRG00000004742)	BMAL2 (ENSABRG00000004330)	STK38L (ENSABRG00000003649)	MED21 (ENSABRG00000003551)	TM7SF3 (ENSABRG00000003535)	FGFR1OP2 (ENSABRG00000003521)
African ostrich	MODERN SPECIES	759	PRR5 (ENSSCUG00000011114)	SHISAL1 (ENSSCUG00000011115) #7	PARVG (ENSSCUG00000011116) #8	PARVB (ENSSCUG00000011120) #9	SAMM50 (ENSSCUG00000011132) #10	PNPLA3 (ENSSCUG00000011149) #11	SULT4A1 (ENSSCUG00000011151) #13	EFCAB6 (ENSSCUG00000011157) #14	MPPED1 (ENSSCUG00000011162) #15	SCUBE1 (ENSSCUG00000011177) #16	TTLL12 (ENSSCUG00000011193) #17	TSPO (ENSSCUG00000011198) #18	MCAT (ENSSCUG00000011199) #19	ENSSCUG00000011201	TTLL1 (ENSSCUG00000011203) #21	PACSIN2 (ENSSCUG00000011205) #22	ARFGAP3 (ENSSCUG00000011207) #23	A4GALT (ENSSCUG00000011210) #24	ENSSCUG00000011212	CYB5R3 (ENSSCUG00000011214) #25	ENSSCUG00000011215	PPFIBP1 (ENSSCUG00000011251)	BMAL2 (ENSSCUG00000011279)	STK38L (ENSSCUG00000011291)	MED21 (ENSSCUG00000011297)	TM7SF3 (ENSSCUG00000011298)	FGFR1OP2 (ENSSCUG00000011301)	INTS13 (ENSSCUG00000011306)	ENSSCUG00000011313	ENSSCUG00000011316	DNAJC11 (ENSSCUG00000011318)
Australian saltwater crocodile	MODERN SPECIES	49	SHISAL1 (ENSCPRG00005002897) #7	PARVG (ENSCPRG00005002917) #8	PARVB (ENSCPRG00005002922) #9	SAMM50 (ENSCPRG00005002939) #10	PNPLA3 (ENSCPRG00005002945) #11	SULT4A1 (ENSCPRG00005002956) #13	ENSCPRG00005002981 #14	MPPED1 (ENSCPRG00005002983) #15	SCUBE1 (ENSCPRG00005003018) #16	ENSCPRG00005003040	TTLL12 (ENSCPRG00005003056) #17	TSPO (ENSCPRG00005003074) #18	MCAT (ENSCPRG00005003081) #19	ENSCPRG00005003115	TTLL1 (ENSCPRG00005003144) #21	PACSIN2 (ENSCPRG00005003149) #22	ARFGAP3 (ENSCPRG00005003154) #23	A4GALT (ENSCPRG00005003168) #24	CYB5R3 (ENSCPRG00005003173) #25	PPFIBP1 (ENSCPRG00005003349)	STK38L (ENSCPRG00005004814)	MED21 (ENSCPRG00005004841)	TM7SF3 (ENSCPRG00005004854)	FGFR1OP2 (ENSCPRG00005004865)	INTS13 (ENSCPRG00005004880)	ITPR2 (ENSCPRG00005005714)	SSPN (ENSCPRG00005011416)	RASSF8 (ENSCPRG00005011432)	ENSCPRG00005011471	KRAS (ENSCPRG00005011484)	DNAI7 (ENSCPRG00005011487)
Cryptodira	ANCESTRAL SPECIES	10	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000158662 #13	ENSGT00940000167968	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT01030000235072	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00530000063825.A.c	ENSGT00940000153962.b #25	ENSGT00390000005178	ENSGT01050000244951.a.a	ENSGT00940000160423	ENSGT00940000153544.b	ENSGT00940000162660.a	ENSGT00390000014557	ENSGT00390000008702	ENSGT00390000018003.b	ENSGT00390000002793	ENSGT00940000156039	ENSGT00390000007747
Testudinoidea	ANCESTRAL SPECIES	4	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000158662 #13	ENSGT00940000167968	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a.a #18	ENSGT00390000013715 #19	ENSGT01030000235072	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00530000063825.A.c	ENSGT00940000153962.b #25	ENSGT00390000005178	ENSGT01050000244951.a.a	ENSGT00940000160423	ENSGT00940000153544.b	ENSGT00940000162660.a	ENSGT00390000014557	ENSGT00390000008702	ENSGT00390000018003.b	ENSGT00390000002793	ENSGT00940000156039	ENSGT00390000007747
Testudinidae	ANCESTRAL SPECIES	14	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000158662 #13	ENSGT00940000167968	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a.a #18	ENSGT00390000013715 #19	ENSGT01030000235072.b	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00530000063825.A.c	ENSGT00940000153962.b #25	ENSGT00390000005178	ENSGT01050000244951.a.a	ENSGT00940000160423	ENSGT00940000153544.b	ENSGT00940000162660.a	ENSGT00390000014557	ENSGT00390000008702	ENSGT00390000018003.b	ENSGT00390000002793	ENSGT00940000156039	ENSGT00390000007747
Goode s thornscrub tortoise	MODERN SPECIES		PRR5 (ENSGEVG00005001517)	SHISAL1 (ENSGEVG00005001537) #7	PARVG (ENSGEVG00005001551) #8	PARVB (ENSGEVG00005001575) #9	SAMM50 (ENSGEVG00005001602) #10	PNPLA3 (ENSGEVG00005001721) #11	SULT4A1 (ENSGEVG00005001764) #13	ENSGEVG00005001815	MPPED1 (ENSGEVG00005001892) #15	SCUBE1 (ENSGEVG00005001939) #16	TTLL12 (ENSGEVG00005001989) #17	ENSGEVG00005002005 #18	MCAT (ENSGEVG00005002033) #19	ENSGEVG00005002092	TTLL1 (ENSGEVG00005002106) #21	PACSIN2 (ENSGEVG00005002129) #22	ARFGAP3 (ENSGEVG00005002157) #23	A4GALT (ENSGEVG00005002241) #24	ENSGEVG00005002257	CYB5R3 (ENSGEVG00005002279) #25	REP15 (ENSGEVG00005002300)	PPFIBP1 (ENSGEVG00005002317)	BMAL2 (ENSGEVG00005002351)	STK38L (ENSGEVG00005002381)	ENSGEVG00005002399	MED21 (ENSGEVG00005002409)	TM7SF3 (ENSGEVG00005002419)	FGFR1OP2 (ENSGEVG00005002446)	INTS13 (ENSGEVG00005002456)	ITPR2 (ENSGEVG00005002806)	SSPN (ENSGEVG00005003444)
Abingdon island giant tortoise	MODERN SPECIES	2378							ENSCABG00000005726 #14	MPPED1 (ENSCABG00000005723) #15	SCUBE1 (ENSCABG00000005715) #16	ENSCABG00000005713	TTLL12 (ENSCABG00000005712) #17	ENSCABG00000005710 #18	MCAT (ENSCABG00000005689) #19	ENSCABG00000005685	TTLL1 (ENSCABG00000005681) #21	PACSIN2 (ENSCABG00000005610) #22	ARFGAP3 (ENSCABG00000005600) #23
Emydidae	ANCESTRAL SPECIES	5	ENSGT00530000063981.a	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000158662 #13	ENSGT00940000167968	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a.a #18	ENSGT00390000013715 #19	ENSGT01030000235072	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00530000063825.A.c	ENSGT00940000153962.b #25	ENSGT00390000005178	ENSGT01050000244951.a.a	ENSGT00940000160423	ENSGT00940000153544.b	ENSGT00940000162660.a	ENSGT00390000014557	ENSGT00390000008702	ENSGT00390000018003.b	ENSGT00390000002793	ENSGT00940000156039	ENSGT00390000007747
Three-toed box turtle	MODERN SPECIES	49	ARHGAP8 (ENSTMTG00000022751)	PRR5 (ENSTMTG00000022745)	SHISAL1 (ENSTMTG00000022742) #7	PARVB (ENSTMTG00000022736) #9	SAMM50 (ENSTMTG00000022731) #10	PNPLA3 (ENSTMTG00000022726) #11	SULT4A1 (ENSTMTG00000022721) #13	ENSTMTG00000022714	MPPED1 (ENSTMTG00000022712) #15	SCUBE1 (ENSTMTG00000022705) #16	TTLL12 (ENSTMTG00000022683) #17	TSPO (ENSTMTG00000022673) #18	MCAT (ENSTMTG00000022671) #19	ENSTMTG00000022668	TTLL1 (ENSTMTG00000022665) #21	PACSIN2 (ENSTMTG00000022661) #22	ARFGAP3 (ENSTMTG00000022658) #23	A4GALT (ENSTMTG00000022655) #24	CYB5R3 (ENSTMTG00000022651) #25	REP15 (ENSTMTG00000022647)	PPFIBP1 (ENSTMTG00000022636)	BMAL2 (ENSTMTG00000022632)	STK38L (ENSTMTG00000022628)	ENSTMTG00000022623	MED21 (ENSTMTG00000022622)	TM7SF3 (ENSTMTG00000022618)	FGFR1OP2 (ENSTMTG00000022615)	ENSTMTG00000022613	INTS13 (ENSTMTG00000022606)	ITPR2 (ENSTMTG00000015648)	SSPN (ENSTMTG00000014686)
painted turtle	MODERN SPECIES	15	ENSCPBG00000025293	PARVG (ENSCPBG00000025289) #8	PARVB (ENSCPBG00000025284) #9	SAMM50 (ENSCPBG00000025275) #10	PNPLA3 (ENSCPBG00000025270) #11	SULT4A1 (ENSCPBG00000025266) #13	ENSCPBG00000025252	MPPED1 (ENSCPBG00000025241) #15	SCUBE1 (ENSCPBG00000025224) #16	TSPO (ENSCPBG00000025213) #18	TTLL12 (ENSCPBG00000025205) #17	MCAT (ENSCPBG00000025199) #19	ENSCPBG00000025197	ENSCPBG00000025195	ENSCPBG00000025187	PACSIN2 (ENSCPBG00000025185) #22	ARFGAP3 (ENSCPBG00000025177) #23	ENSCPBG00000025174	A4GALT (ENSCPBG00000025172) #24	ENSCPBG00000025169	CYB5R3 (ENSCPBG00000025168) #25	REP15 (ENSCPBG00000025166)	PPFIBP1 (ENSCPBG00000023210)	BMAL2 (ENSCPBG00000023135)	STK38L (ENSCPBG00000023125)	MED21 (ENSCPBG00000023117)	TM7SF3 (ENSCPBG00000023111)	FGFR1OP2 (ENSCPBG00000023106)	INTS13 (ENSCPBG00000023095)	ENSCPBG00000023088	ITPR2 (ENSCPBG00000009996)
Chinese turtle	MODERN SPECIES	1391	ENSPSIG00000016366	SHISAL1 (ENSPSIG00000016277) #7	PARVG (ENSPSIG00000016177) #8	PARVB (ENSPSIG00000015515) #9	SAMM50 (ENSPSIG00000015489) #10	PNPLA3 (ENSPSIG00000015442) #11	SULT4A1 (ENSPSIG00000015050) #13	ENSPSIG00000014869	MPPED1 (ENSPSIG00000014167) #15	SCUBE1 (ENSPSIG00000014152) #16	TTLL12 (ENSPSIG00000013816) #17	TSPO (ENSPSIG00000013609) #18	MCAT (ENSPSIG00000013427) #19	TTLL1 (ENSPSIG00000013170) #21	ENSPSIG00000013125	PACSIN2 (ENSPSIG00000012828) #22	ARFGAP3 (ENSPSIG00000011954) #23	A4GALT (ENSPSIG00000001335) #24	ENSPSIG00000011949	ENSPSIG00000010457	ENSPSIG00000001327	CYB5R3 (ENSPSIG00000010316) #25	REP15 (ENSPSIG00000001321)	PPFIBP1 (ENSPSIG00000010149)	BMAL2 (ENSPSIG00000009416)	STK38L (ENSPSIG00000008466)	ENSPSIG00000008183	MED21 (ENSPSIG00000008148)	TM7SF3 (ENSPSIG00000007228)	FGFR1OP2 (ENSPSIG00000006855)	INTS13 (ENSPSIG00000017830)
Lepidosauria	ANCESTRAL SPECIES	45	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000158662 #13	ENSGT00940000167968	ENSGT00960000189257	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT01030000235072	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24
Episquamata	ANCESTRAL SPECIES	3	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000158662 #13	ENSGT00940000167968	ENSGT00960000189257	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT01030000235072	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00530000063825.A.c	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000158437	ENSGT00940000158203	ENSGT00940000156681	ENSGT01030000234595.B.c.b	ENSGT00940000154983.c.b	ENSGT00940000156016	ENSGT00390000010221	ENSGT00390000013550	ENSGT00940000157779	ENSGT00940000156380	ENSGT00390000007160.a.b
Laterata	ANCESTRAL SPECIES	6	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000158662 #13	ENSGT00960000189257	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT01030000235072	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00530000063825.A.c	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000158437	ENSGT00940000158203	ENSGT00940000156681	ENSGT01030000234595.B.c.b	ENSGT00940000154983.c.b	ENSGT00940000156016	ENSGT00390000010221.a	ENSGT00390000013550	ENSGT00940000157779	ENSGT00940000156380	ENSGT00390000007160.a.b
Argentine black and white tegu	MODERN SPECIES	33	SHISAL1 (ENSSMRG00000009294) #7	PARVG (ENSSMRG00000009298) #8	PARVB (ENSSMRG00000009299) #9	SAMM50 (ENSSMRG00000009302) #10	PNPLA3 (ENSSMRG00000009305) #11	SULT4A1 (ENSSMRG00000009306) #13	ENSSMRG00000009314	ENSSMRG00000009315 #14	MPPED1 (ENSSMRG00000009327) #15	SCUBE1 (ENSSMRG00000009330) #16	TTLL12 (ENSSMRG00000009334) #17	TSPO (ENSSMRG00000009335) #18	MCAT (ENSSMRG00000009336) #19	ENSSMRG00000009337	TTLL1 (ENSSMRG00000009339) #21	PACSIN2 (ENSSMRG00000009342) #22	ARFGAP3 (ENSSMRG00000009345) #23	ENSSMRG00000009348	ENSSMRG00000009349	A4GALT (ENSSMRG00000009350) #24	ENSSMRG00000009351	ENSSMRG00000009365	ENSSMRG00000009367	SEMA3E (ENSSMRG00000009370)	ENSSMRG00000009386	SEMA3A (ENSSMRG00000009391)	ENSSMRG00000009407	SEMA3D (ENSSMRG00000009414)	ENSSMRG00000009423	ENSSMRG00000009438	GRM3 (ENSSMRG00000009448)
Common wall lizard	MODERN SPECIES	13	PARVG (ENSPMRG00000001787) #8	PARVB (ENSPMRG00000001810) #9	SAMM50 (ENSPMRG00000001840) #10	PNPLA3 (ENSPMRG00000001861) #11	ENSPMRG00000001871	SULT4A1 (ENSPMRG00000001880) #13	ENSPMRG00000001887	ENSPMRG00000001898	MPPED1 (ENSPMRG00000001918) #15	ENSPMRG00000001934 #16	TTLL12 (ENSPMRG00000001961) #17	TSPO (ENSPMRG00000001983) #18	MCAT (ENSPMRG00000001992) #19	ENSPMRG00000001996	TTLL1 (ENSPMRG00000002003) #21	PACSIN2 (ENSPMRG00000002017) #22	ARFGAP3 (ENSPMRG00000002046) #23	A4GALT (ENSPMRG00000002069) #24	ENSPMRG00000002073	PCLO (ENSPMRG00000002083)	SEMA3E (ENSPMRG00000002102)	SEMA3A (ENSPMRG00000002120)	SEMA3D (ENSPMRG00000002148)	ENSPMRG00000002159	ENSPMRG00000000243	ENSPMRG00000000293	CD9 (ENSPMRG00000000411)	VWF (ENSPMRG00000001324)	ANO2 (ENSPMRG00000002983)	NTF3 (ENSPMRG00000003518)	KCNA5 (ENSPMRG00000003528)
Toxicofera	ANCESTRAL SPECIES	7	ENSGT00530000063981.a	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000158662 #13	ENSGT00940000167968	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT01030000235072	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00510000047981.c #24	ENSGT00530000063825.A.c	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000158437	ENSGT00940000158203	ENSGT00940000156681	ENSGT01030000234595.B.c.b	ENSGT00940000154983.c.b	ENSGT00940000156016	ENSGT00390000010221	ENSGT00390000013550	ENSGT00940000157779	ENSGT00940000156380	ENSGT00390000007160.a.b
Elapidae	ANCESTRAL SPECIES	6	ENSGT00940000160758	ENSGT00530000063981.a	ENSGT00390000006791 #7	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000158662 #13	ENSGT00940000167968	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT01030000235072	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00940000155323.a.m	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00390000014323	ENSGT00940000159839	ENSGT00390000010968	ENSGT00940000156976	ENSGT00940000159840	ENSGT00940000160682.b	ENSGT00940000157236	ENSGT00940000161365	ENSGT00950000183090.B	ENSGT00940000160071
Elapidae_a	ANCESTRAL SPECIES	60	ENSGT00940000160758	ENSGT00530000063981.a	ENSGT00390000006791 #7	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000158662 #13	ENSGT00940000167968	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT01030000235072	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00940000155323.a.m	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00390000014323	ENSGT00940000159839	ENSGT00390000010968	ENSGT00940000156976	ENSGT00940000159840	ENSGT00940000160682.b
Acanthophiinae	ANCESTRAL SPECIES		ENSGT00940000160758	ENSGT00530000063981.a	ENSGT00390000006791 #7	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000158662 #13	ENSGT00940000167968	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT01030000235072	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00940000155323.a.m	ENSGT00940000159679	ENSGT00390000012906	ENSGT00390000012942	ENSGT00390000014323	ENSGT00940000159839	ENSGT00390000010968	ENSGT00940000156976	ENSGT00940000159840	ENSGT00940000160682.b
Mainland tiger snake	MODERN SPECIES	92	ARHGAP8 (ENSNSUG00000007486)	PRR5 (ENSNSUG00000007502)	SHISAL1 (ENSNSUG00000007589) #7	PARVB (ENSNSUG00000007590) #9	SAMM50 (ENSNSUG00000007591) #10	PNPLA3 (ENSNSUG00000007885) #11	SULT4A1 (ENSNSUG00000007888) #13	ENSNSUG00000007890	MPPED1 (ENSNSUG00000007891) #15	SCUBE1 (ENSNSUG00000007893) #16	TTLL12 (ENSNSUG00000008353) #17	TSPO (ENSNSUG00000008354) #18	MCAT (ENSNSUG00000008355) #19	ENSNSUG00000008363	TTLL1 (ENSNSUG00000008364) #21	PACSIN2 (ENSNSUG00000008365) #22	ARFGAP3 (ENSNSUG00000008366) #23	KIF21A (ENSNSUG00000008371)	ENSNSUG00000010952	CPNE8 (ENSNSUG00000010953)	ENSNSUG00000010956	ENSNSUG00000010957	TPRKB (ENSNSUG00000010958)	TRMU (ENSNSUG00000010959)	CELSR1 (ENSNSUG00000010961)	GRAMD4 (ENSNSUG00000010962)	CERK (ENSNSUG00000010964)	TBC1D22A (ENSNSUG00000011060)	TAFA5 (ENSNSUG00000011205)
Eastern brown snake	MODERN SPECIES		ARHGAP8 (ENSPTXG00000002524)	PRR5 (ENSPTXG00000002715)	SHISAL1 (ENSPTXG00000002717) #7	PARVB (ENSPTXG00000002720) #9	SAMM50 (ENSPTXG00000002721) #10	PNPLA3 (ENSPTXG00000002723) #11	SULT4A1 (ENSPTXG00000002726) #13	ENSPTXG00000002728	MPPED1 (ENSPTXG00000002733) #15	SCUBE1 (ENSPTXG00000002802) #16	TTLL12 (ENSPTXG00000006839) #17	TSPO (ENSPTXG00000006841) #18	MCAT (ENSPTXG00000006842) #19	ENSPTXG00000006844	TTLL1 (ENSPTXG00000006845) #21	PACSIN2 (ENSPTXG00000006847) #22	ARFGAP3 (ENSPTXG00000006848) #23	KIF21A (ENSPTXG00000006849)	CPNE8 (ENSPTXG00000006858)	ENSPTXG00000006861	TPRKB (ENSPTXG00000006863)	TRMU (ENSPTXG00000006864)	CELSR1 (ENSPTXG00000006865)	GRAMD4 (ENSPTXG00000006866)	CERK (ENSPTXG00000006867)	TBC1D22A (ENSPTXG00000006868)	TAFA5 (ENSPTXG00000006870)
Blue-lipped sea krait	MODERN SPECIES	9883																PACSIN2 (ENSLLTG00000017550) #22
Indian cobra	MODERN SPECIES	10	ARHGAP8 (ENSNNAG00000016214)	PRR5 (ENSNNAG00000016318)	SHISAL1 (ENSNNAG00000016382) #7	PARVB (ENSNNAG00000016385) #9	SAMM50 (ENSNNAG00000016401) #10	PNPLA3 (ENSNNAG00000016418) #11	SULT4A1 (ENSNNAG00000016558) #13	ENSNNAG00000016577	MPPED1 (ENSNNAG00000016602) #15	SCUBE1 (ENSNNAG00000016624) #16	TTLL12 (ENSNNAG00000016666) #17	TSPO (ENSNNAG00000016729) #18	MCAT (ENSNNAG00000016738) #19	ENSNNAG00000016747	TTLL1 (ENSNNAG00000016755) #21	PACSIN2 (ENSNNAG00000016771) #22	ARFGAP3 (ENSNNAG00000016802) #23	KIF21A (ENSNNAG00000017071)	ENSNNAG00000018164	ENSNNAG00000018170	ENSNNAG00000003587	TPRKB (ENSNNAG00000003596)	TRMU (ENSNNAG00000003619)	CELSR1 (ENSNNAG00000003647)	GRAMD4 (ENSNNAG00000003777)	CERK (ENSNNAG00000003838)	TBC1D22A (ENSNNAG00000003896)	TAFA5 (ENSNNAG00000003962)	BRD1 (ENSNNAG00000003986)	ZBED4 (ENSNNAG00000004020)	ENSNNAG00000004041
Lizard	MODERN SPECIES	4	ENSACAG00000041942	SHISAL1 (ENSACAG00000015829) #7	PARVG (ENSACAG00000015831) #8	PARVB (ENSACAG00000027642) #9	SAMM50 (ENSACAG00000015889) #10	PNPLA3 (ENSACAG00000015959) #11	SULT4A1 (ENSACAG00000016231) #13	ENSACAG00000015689	MPPED1 (ENSACAG00000029062) #15	SCUBE1 (ENSACAG00000015808) #16	ENSACAG00000034698	TSPO (ENSACAG00000015880) #18	MCAT (ENSACAG00000015897) #19	ENSACAG00000039930	TTLL1 (ENSACAG00000015904) #21	PACSIN2 (ENSACAG00000015928) #22	ARFGAP3 (ENSACAG00000016041) #23	A4GALT (ENSACAG00000016090) #24	ENSACAG00000016097	PCLO (ENSACAG00000016099)	ENSACAG00000039518	SEMA3E (ENSACAG00000016165)	SEMA3A (ENSACAG00000016227)	SEMA3D (ENSACAG00000016342)	ENSACAG00000042964	ENSACAG00000036841	GRM3 (ENSACAG00000016442)	ELAPOR2 (ENSACAG00000016478)	OPTN (ENSACAG00000001364)	MCM10 (ENSACAG00000001208)	UCMA (ENSACAG00000001195)
tuatara	MODERN SPECIES	1353							SULT4A1 (ENSSPUG00000009745) #13	ENSSPUG00000009754 #14	MPPED1 (ENSSPUG00000009771) #15	SCUBE1 (ENSSPUG00000009860) #16	TTLL12 (ENSSPUG00000010014) #17	TSPO (ENSSPUG00000010058) #18	MCAT (ENSSPUG00000010071) #19	ENSSPUG00000010085	TTLL1 (ENSSPUG00000010104) #21	PACSIN2 (ENSSPUG00000010142) #22	ENSSPUG00000010153 #23	ENSSPUG00000010161 #23	A4GALT (ENSSPUG00000010187) #24
Anura	ANCESTRAL SPECIES	53	ENSGT00530000063981.a	ENSGT00390000006791 #7	ENSGT00950000183194.b #8	ENSGT00950000183194.a.a #9	ENSGT00390000011355 #10	ENSGT00940000155662 #11	ENSGT00940000158662 #13	ENSGT00960000189257	ENSGT00390000013629 #14	ENSGT00390000007681.b.a.b #15	ENSGT00940000153185.a.a.a #16	ENSGT00390000006760 #17	ENSGT00390000012980.a #18	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00530000063825.A.c	ENSGT00940000153962.b #25	ENSGT00390000005178	ENSGT01050000244951.a.b.b	ENSGT00940000158899	ENSGT00940000166645	ENSGT00940000158677	ENSGT00940000160423	ENSGT00940000153544.b
Frog	MODERN SPECIES	3	has1 (ENSXETG00000020515)	med21 (ENSXETG00000003233)	asb14 (ENSXETG00000003053)	kiaa0930 (ENSXETG00000045686)	smc1b (ENSXETG00000003064)	ribc2 (ENSXETG00000041766)	fbln1 (ENSXETG00000045976)	ENSXETG00000043988	ppara (ENSXETG00000049022)	ENSXETG00000043577	atxn10 (ENSXETG00000003072)	wnt7b (ENSXETG00000049086)	ENSXETG00000045255	mcat (ENSXETG00000003269) #19	ttll1 (ENSXETG00000003267) #21	pacsin2 (ENSXETG00000003264) #22	arfgap3 (ENSXETG00000043955) #23	tm7sf3 (ENSXETG00000034421)	phf21b (ENSXETG00000003257)	ENSXETG00000044263	prr5 (ENSXETG00000043619)	SHISAL1 (ENSXETG00000047907) #7	parvg (ENSXETG00000031105) #8	parvb (ENSXETG00000004872) #9	taf13 (ENSXETG00000004871) #10	pnpla3 (ENSXETG00000004865) #11	sult4a1 (ENSXETG00000004864) #13	ENSXETG00000048229	ENSXETG00000048158 #14	MPPED1 (ENSXETG00000043661) #15	scube1 (ENSXETG00000012277) #16
Leishan spiny toad	MODERN SPECIES	6	ENSLLEG00000017236	ARHGAP8 (ENSLLEG00000017301)	ENSLLEG00000017556	PRR5 (ENSLLEG00000017587)	ENSLLEG00000017861	ENSLLEG00000017888	SHISAL1 (ENSLLEG00000017912) #7	ENSLLEG00000017994	PARVG (ENSLLEG00000018013) #8	ENSLLEG00000005796	PARVB (ENSLLEG00000005824) #9	SAMM50 (ENSLLEG00000006039) #10	PNPLA3 (ENSLLEG00000006387) #11	ENSLLEG00000006436	SULT4A1 (ENSLLEG00000006453) #13	PACSIN2 (ENSLLEG00000006520) #22	ARFGAP3 (ENSLLEG00000006805) #23	ENSLLEG00000006954	CYB5R3 (ENSLLEG00000007020) #25	REP15 (ENSLLEG00000007084)	ENSLLEG00000007146	SYT10 (ENSLLEG00000007519)	ENSLLEG00000007578	BHLHE41 (ENSLLEG00000007610)	RASSF8 (ENSLLEG00000007635)	ENSLLEG00000007665	ENSLLEG00000007727	ENSLLEG00000007736	ENSLLEG00000007752	ENSLLEG00000007777	ENSLLEG00000007799
Coelacanth	MODERN SPECIES	399	ETV6 (ENSLACG00000002357)	KIAA0930 (ENSLACG00000008762)	NUP50 (ENSLACG00000009930)	ENSLACG00000012140	PHF21B (ENSLACG00000012782)	ARHGAP8 (ENSLACG00000013561)	hdhd5 (ENSLACG00000015091)	mkrn1 (ENSLACG00000015245)	RAB19 (ENSLACG00000015436)	ENSLACG00000015491	ENSLACG00000015789	ENSLACG00000016717	ENSLACG00000017006 ##18	MCAT (ENSLACG00000017055) #19	TTLL1 (ENSLACG00000017190) #21	PACSIN2 (ENSLACG00000017334) #22
Actinopterygii	ANCESTRAL SPECIES	44				ENSGT00390000007640.a	ENSGT00940000158940	ENSGT00430000031071	ENSGT00960000189759	ENSGT00940000160758	ENSGT00990000206310	ENSGT00940000161105	ENSGT00440000035348	ENSGT00390000004190	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00940000154572	ENSGT00940000157710	ENSGT00390000018647	ENSGT00940000157835	ENSGT00720000108833	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000162483	ENSGT00950000182885.B	ENSGT00950000182885.C.b
Neopterygii	ANCESTRAL SPECIES	29	ENSGT00530000063868.b	ENSGT00390000013052	ENSGT00810000125439.B	ENSGT00950000182818.B	ENSGT00950000183093.A.a	ENSGT00940000158969	ENSGT00390000016138	ENSGT00950000183205.b.a.b.a.b	ENSGT00940000160716	ENSGT00940000155486	ENSGT00940000158917	ENSGT00950000183146.a.a	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00940000154572	ENSGT00940000157710	ENSGT00390000018647	ENSGT00940000157835	ENSGT00720000108833	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a	ENSGT00950000182885.B	ENSGT00950000182885.C.b
Osteoglossocephalai	ANCESTRAL SPECIES	281													ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00940000154572	ENSGT00940000157710	ENSGT00390000018647	ENSGT00940000157835	ENSGT00720000108833	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676
Clupeocephala	ANCESTRAL SPECIES	321													ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00940000154572	ENSGT00940000157710	ENSGT00390000018647	ENSGT00940000157835	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a
Euteleosteomorpha	ANCESTRAL SPECIES	60												ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT01030000234980	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000177480.a	ENSGT00940000154572.g.b	ENSGT00940000157710	ENSGT00390000018647	ENSGT00940000157835	ENSGT00940000155095.i.b.b	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a
Acanthomorphata	ANCESTRAL SPECIES	67											ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT01030000234980	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000177480.a	ENSGT00940000154572.g.b	ENSGT00940000157710	ENSGT00940000157835	ENSGT00940000155095.i.b.b	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT00940000164581.B	ENSGT00940000171480	ENSGT01000000214676
Euacanthomorphacea	ANCESTRAL SPECIES	18	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT00940000153582.a.m.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT01030000234980	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00950000183116.a.a	ENSGT00940000154572.h	ENSGT00940000177480.a	ENSGT00940000154572.g.b	ENSGT00940000157710	ENSGT00940000157835	ENSGT00940000155095.i.b.b	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a
Pinecone sodierfish	MODERN SPECIES	15	GALNT8 (ENSMMDG00005023287)	ADA2 (ENSMMDG00005014512)	atp6v1e1b (ENSMMDG00005014514)	ENSMMDG00005014519	spic (ENSMMDG00005014520)	mybpc1 (ENSMMDG00005014521)	chpt1 (ENSMMDG00005014530)	gnptab (ENSMMDG00005014597)	dram1 (ENSMMDG00005014664)	washc3 (ENSMMDG00005014879)	ENSMMDG00005014883	ENSMMDG00005014885	ENSMMDG00005014888	mcat (ENSMMDG00005014903) #19	ttll1 (ENSMMDG00005014906) #21	pacsin2 (ENSMMDG00005014911) #22	arfgap3 (ENSMMDG00005014940) #23	ENSMMDG00005014948	ENSMMDG00005014949	uhrf1bp1l (ENSMMDG00005014951)	ENSMMDG00005014954	anks1b (ENSMMDG00005014962)	apaf1 (ENSMMDG00005015800)	tcp11l2 (ENSMMDG00005015882)	FUT9 (ENSMMDG00005015886)	FUT9 (ENSMMDG00005015891)	FUT9 (ENSMMDG00005015892)	FUT9 (ENSMMDG00005015893)	FUT9 (ENSMMDG00005015894)	ENSMMDG00005015900	scyl2 (ENSMMDG00005015906)
Percomorphaceae	ANCESTRAL SPECIES	19	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT00940000153582.a.m.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT01030000234980	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00950000183116.a.a	ENSGT00940000154572.h	ENSGT00940000177480.a	ENSGT00940000154572.g.b	ENSGT00940000157710	ENSGT00940000157835	ENSGT00940000155095.i.b.b	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a
Tiger tail seahorse	MODERN SPECIES	321	ifrd1 (ENSHCOG00000006531)	dock4b (ENSHCOG00000006815)	LRRN3 (ENSHCOG00000006852)	LRRN3 (ENSHCOG00000006866)	ENSHCOG00000006887	ENSHCOG00000000200	scyl2 (ENSHCOG00000006943)	tcp11l2 (ENSHCOG00000006956)	apaf1 (ENSHCOG00000006976)	ENSHCOG00000006993	ENSHCOG00000007020	ENSHCOG00000007098	ENSHCOG00000007115	mcat (ENSHCOG00000007125) #19	ttll1 (ENSHCOG00000007167) #21	pacsin2 (ENSHCOG00000007229) #22	ENSHCOG00000007277 #23	arfgap3 (ENSHCOG00000007301) #23	ENSHCOG00000007312	ENSHCOG00000007324	ENSHCOG00000007344	uhrf1bp1l (ENSHCOG00000007367)	ENSHCOG00000000661	anks1b (ENSHCOG00000007413)	dram1 (ENSHCOG00000007432)	ENSHCOG00000007439	ENSHCOG00000007452	chpt1 (ENSHCOG00000007471)	mybpc1 (ENSHCOG00000007504)	spic (ENSHCOG00000007523)	atp6v1e1b (ENSHCOG00000007534)
Percomorphaceae_B	ANCESTRAL SPECIES	21	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT00940000153582.a.m.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT01030000234980	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00950000183116.a.a	ENSGT00940000154572.h	ENSGT00940000177480.a	ENSGT00940000154572.g.b	ENSGT00940000157710	ENSGT00940000157835	ENSGT00940000155095.i.b.b	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a
Percomorphaceae_C	ANCESTRAL SPECIES	22	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT00940000153582.a.m.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT01030000234980	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00950000183116.a.a	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000177480.a	ENSGT00940000154572.g.b	ENSGT00940000157710	ENSGT00940000157835	ENSGT00940000155095.i.b.b	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a
Eupercaria	ANCESTRAL SPECIES	21	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT00940000153582.a.m.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT01030000234980	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00950000183116.a.a	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000157710	ENSGT00940000157835	ENSGT00940000155095.i.b.b	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b	ENSGT00940000157574
Tetraodontidae	ANCESTRAL SPECIES	17	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT00940000168691	ENSGT01100000263519.E.b.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000157710	ENSGT00940000157835	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a	ENSGT00940000157574	ENSGT00940000158968	ENSGT00940000158177.b	ENSGT00940000158382
Fugu	MODERN SPECIES	9	GALNT8 (ENSTRUG00000011109)	ADA2 (ENSTRUG00000011247)	atp6v1e1b (ENSTRUG00000011314)	spic (ENSTRUG00000011424)	ENSTRUG00000031004	mybpc1 (ENSTRUG00000011461)	chpt1 (ENSTRUG00000011969)	gnptab (ENSTRUG00000012120)	dram1 (ENSTRUG00000032116)	washc3 (ENSTRUG00000029044)	ENSTRUG00000026359	ENSTRUG00000022066	ENSTRUG00000012399	ENSTRUG00000012423	ttll1 (ENSTRUG00000012595) #21	pacsin2 (ENSTRUG00000012654) #22	ENSTRUG00000013651	arfgap3 (ENSTRUG00000012812) #23	ENSTRUG00000023311	ENSTRUG00000012913	uhrf1bp1l (ENSTRUG00000012937)	anks1b (ENSTRUG00000013069)	apaf1 (ENSTRUG00000013192)	tcp11l2 (ENSTRUG00000013371)	ENSTRUG00000013501	scyl2 (ENSTRUG00000013597)	ENSTRUG00000022466	epyc (ENSTRUG00000013658)	kera (ENSTRUG00000013697)	lum (ENSTRUG00000025547)	dcn (ENSTRUG00000013771)
Tetraodon	MODERN SPECIES	11	tigarb (ENSTNIG00000001586)	fgf23 (ENSTNIG00000011410)	fgf6b (ENSTNIG00000011411)	ADA2 (ENSTNIG00000011412)	atp6v1e1b (ENSTNIG00000011413)	spic (ENSTNIG00000000056)	mybpc1 (ENSTNIG00000011414)	chpt1 (ENSTNIG00000011415)	gnptab (ENSTNIG00000011416)	dram1 (ENSTNIG00000001389)	washc3 (ENSTNIG00000011417)	ENSTNIG00000011419	ENSTNIG00000011420	mcat (ENSTNIG00000011421) #19	ttll1 (ENSTNIG00000011422) #21	pacsin2 (ENSTNIG00000011423) #22	arfgap3 (ENSTNIG00000011424) #23	ENSTNIG00000000798	ENSTNIG00000011425	uhrf1bp1l (ENSTNIG00000011426)	anks1b (ENSTNIG00000018849)	apaf1 (ENSTNIG00000011007)	tcp11l2 (ENSTNIG00000011008)	ENSTNIG00000011009	epyc (ENSTNIG00000011010)	kera (ENSTNIG00000011011)	lum (ENSTNIG00000001124)	dcn (ENSTNIG00000011012)	btg1 (ENSTNIG00000011013)	fam3c (ENSTNIG00000011014)	ENSTNIG00000011015
Eupecaria_A	ANCESTRAL SPECIES	21	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT00940000153582.a.m.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT01030000234980	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00950000183116.a.a	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000157710	ENSGT00940000157835	ENSGT00940000155095.i.b.b	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b	ENSGT00940000157574
Ballan wrasse	MODERN SPECIES	288					btg1 (ENSLBEG00000021173)	fam3c (ENSLBEG00000021194)	ENSLBEG00000021230	dram1 (ENSLBEG00000021279)	washc3 (ENSLBEG00000021335)	ENSLBEG00000021362	ENSLBEG00000021382	ENSLBEG00000021405	mcat (ENSLBEG00000021435) #19	ENSLBEG00000021449	ttll1 (ENSLBEG00000021464) #21	pacsin2 (ENSLBEG00000021510) #22	arfgap3 (ENSLBEG00000021563) #23	IKBIP (ENSLBEG00000021638)	ENSLBEG00000021657	tnnt2c (ENSLBEG00000021670)	syt10 (ENSLBEG00000021731)	ENSLBEG00000021784	cyb5r3 (ENSLBEG00000021856) #25	syt1a (ENSLBEG00000021895)	pawr (ENSLBEG00000021925)	ppp1r12a (ENSLBEG00000021962)	rps16 (ENSLBEG00000022009)	myf6 (ENSLBEG00000022039)	myf5 (ENSLBEG00000022115)	lin7a (ENSLBEG00000022140)	ACSS3 (ENSLBEG00000022189)
Eupecaria_B	ANCESTRAL SPECIES	21	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT00940000153582.a.m.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT01030000234980	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00950000183116.a.a	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000157710	ENSGT00940000157835	ENSGT00940000155095.i.b.b	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b	ENSGT00940000157574
Perciformes	ANCESTRAL SPECIES	18	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT00940000153582.a.m.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT01030000234980	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00950000183116.a.a	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000157710	ENSGT00940000157835	ENSGT00940000155095.i.b.b	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b	ENSGT00940000157574
Cottioidei	ANCESTRAL SPECIES	19	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT00400000022326.b.b.b	ENSGT00950000183169.B	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00950000183116.a.a	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000157710	ENSGT00940000157835	ENSGT00940000155095.i.b.b	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT00940000171480	ENSGT01000000214676	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b
Lumpfish	MODERN SPECIES	15	ADA2 (ENSCLMG00005016215)	atp6v1e1b (ENSCLMG00005016223)	spic (ENSCLMG00005016229)	ENSCLMG00005016231	mybpc1 (ENSCLMG00005016235)	chpt1 (ENSCLMG00005016241)	gnptab (ENSCLMG00005016254)	dram1 (ENSCLMG00005016468)	washc3 (ENSCLMG00005016470)	ENSCLMG00005016471	ENSCLMG00005016472	ENSCLMG00005016474	ENSCLMG00005016498	mcat (ENSCLMG00005016500) #19	ttll1 (ENSCLMG00005016502) #21	pacsin2 (ENSCLMG00005016503) #22	arfgap3 (ENSCLMG00005016508) #23	ENSCLMG00005016527	ENSCLMG00005016528	uhrf1bp1l (ENSCLMG00005016536)	anks1b (ENSCLMG00005016584)	apaf1 (ENSCLMG00005016672)	ENSCLMG00005018160	cry1a (ENSCLMG00005018166)	ABTB3 (ENSCLMG00005018797)	ENSCLMG00005018798	ENSCLMG00005018799	ENSCLMG00005018800	igf1 (ENSCLMG00005018801)	ENSCLMG00005018803	parpbp (ENSCLMG00005018804)
Stickleback	MODERN SPECIES	3	GALNT8 (ENSGACG00000019901)	ADA2 (ENSGACG00000019897)	atp6v1e1b (ENSGACG00000019892)	ENSGACG00000019891	spic (ENSGACG00000019889)	mybpc1 (ENSGACG00000019879)	chpt1 (ENSGACG00000019869)	gnptab (ENSGACG00000019866)	washc3 (ENSGACG00000019865)	ENSGACG00000019864	ENSGACG00000019863	ENSGACG00000019862	ENSGACG00000019860	mcat (ENSGACG00000019859) #19	ttll1 (ENSGACG00000019858) #21	pacsin2 (ENSGACG00000019857) #22	arfgap3 (ENSGACG00000019855) #23	ENSGACG00000019853	ENSGACG00000019851	ENSGACG00000019849	uhrf1bp1l (ENSGACG00000019845)	anks1b (ENSGACG00000019843)	apaf1 (ENSGACG00000019839)	tcp11l2 (ENSGACG00000019838)	ENSGACG00000019837	FUT9 (ENSGACG00000019836)	FUT9 (ENSGACG00000019835)	FUT9 (ENSGACG00000019833)	ENSGACG00000019832	FUT9 (ENSGACG00000019831)	FUT9 (ENSGACG00000019830)
Perciformes_a	ANCESTRAL SPECIES	19	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT00940000153582.a.m.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT01030000234980	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00950000183116.a.a	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000157710	ENSGT00940000157835	ENSGT00940000155095.i.b.b	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b	ENSGT00940000157574
Pike perch	MODERN SPECIES	28	ENSSLUG00000014772	mtpn (ENSSLUG00000014767)	chrm2a (ENSSLUG00000014763)	ptn (ENSSLUG00000014755)	ENSSLUG00000014749	ENSSLUG00000014743	TULP3 (ENSSLUG00000014732)	rhno1 (ENSSLUG00000014724)	foxm1 (ENSSLUG00000014719)	ENSSLUG00000014660	ENSSLUG00000014620	ENSSLUG00000014615	mcat (ENSSLUG00000014611) #19	ENSSLUG00000014605	ttll1 (ENSSLUG00000014599) #21	pacsin2 (ENSSLUG00000014526) #22	arfgap3 (ENSSLUG00000014442) #23	ENSSLUG00000014426	ENSSLUG00000014420	ENSSLUG00000014415	uhrf1bp1l (ENSSLUG00000014381)	anks1b (ENSSLUG00000014070)	apaf1 (ENSSLUG00000013724)	tcp11l2 (ENSSLUG00000013639)	FUT9 (ENSSLUG00000013575)	DEPDC4 (ENSSLUG00000013571)	scyl2 (ENSSLUG00000013558)	ENSSLUG00000013547	si:ch211-244b2.4 (ENSSLUG00000013543)	si:dkeyp-38g8.5 (ENSSLUG00000013540)	epyc (ENSSLUG00000013536)
Channel bull blenny	MODERN SPECIES	15	fam3c (ENSCGOG00000019696)	btg1 (ENSCGOG00000019694)	ENSCGOG00000019675	dcn (ENSCGOG00000019639)	lum (ENSCGOG00000019634)	kera (ENSCGOG00000019628)	epyc (ENSCGOG00000019622)	si:dkeyp-38g8.5 (ENSCGOG00000019621)	ENSCGOG00000019619	washc3 (ENSCGOG00000019618)	ENSCGOG00000019606	ENSCGOG00000019585	ENSCGOG00000019583	mcat (ENSCGOG00000019581) #19	ttll1 (ENSCGOG00000019575) #21	pacsin2 (ENSCGOG00000019377) #22	arfgap3 (ENSCGOG00000019165) #23	IKBIP (ENSCGOG00000019151)	ENSCGOG00000019154	uhrf1bp1l (ENSCGOG00000018932)	ENSCGOG00000018925	anks1b (ENSCGOG00000018750)	apaf1 (ENSCGOG00000017773)	tcp11l2 (ENSCGOG00000017725)	ft2 (ENSCGOG00000017724)	ENSCGOG00000017722	scyl2 (ENSCGOG00000017387)	si:ch211-244b2.3 (ENSCGOG00000017376)	dram1 (ENSCGOG00000017374)	gnptab (ENSCGOG00000017075)	chpt1 (ENSCGOG00000016948)
Eupecaria_C	ANCESTRAL SPECIES	18	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT00940000153582.a.m.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT01030000234980	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00950000183116.a.a	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000157710	ENSGT00940000157835	ENSGT00940000155095.i.b.b	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b	ENSGT00940000157574
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	22	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT00940000153582.a.m.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT01030000234980	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00950000183116.a.a	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000157710	ENSGT00940000157835	ENSGT00940000155095.i.b.b	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT00940000164581.B	ENSGT00940000164581.A.a.a	ENSGT00940000157574	ENSGT00940000158968
European seabass	MODERN SPECIES	23	FGF6 (ENSDLAG00005030019)	rad51ap1 (ENSDLAG00005019357)	ENSDLAG00005019342	ENSDLAG00005019333	spic (ENSDLAG00005019316)	ENSDLAG00005019314	mybpc1 (ENSDLAG00005015940)	chpt1 (ENSDLAG00005015692)	dram1 (ENSDLAG00005015685)	gnptab (ENSDLAG00005015505)	ENSDLAG00005015488	ENSDLAG00005025988	ENSDLAG00005025984	ENSDLAG00005025980	ttll1 (ENSDLAG00005025979) #21	pacsin2 (ENSDLAG00005025974) #22	arfgap3 (ENSDLAG00005025957) #23	ENSDLAG00005025949	ENSDLAG00005025948	uhrf1bp1l (ENSDLAG00005025914)	ENSDLAG00005025898	apaf1 (ENSDLAG00005025867)	ENSDLAG00005025862	scyl2 (ENSDLAG00005032025)	ENSDLAG00005025844	si:ch211-244b2.4 (ENSDLAG00005025840)	epyc (ENSDLAG00005025831)	kera (ENSDLAG00005025828)	lum (ENSDLAG00005025826)	dcn (ENSDLAG00005025824)	ENSDLAG00005025823
Large yellow croaker	MODERN SPECIES	491	atp6v1e1b (ENSLCRG00005013754)	ENSLCRG00005013752	spic (ENSLCRG00005013751)	ENSLCRG00005013750	mybpc1 (ENSLCRG00005010856)	chpt1 (ENSLCRG00005010829)	gnptab (ENSLCRG00005010787)	dram1 (ENSLCRG00005010785)	washc3 (ENSLCRG00005010784)	ENSLCRG00005010782	ENSLCRG00005010723	ENSLCRG00005010721	mcat (ENSLCRG00005010719) #19	ENSLCRG00005010718	ttll1 (ENSLCRG00005010717) #21	pacsin2 (ENSLCRG00005010714) #22	arfgap3 (ENSLCRG00005010696) #23	ENSLCRG00005007713	ENSLCRG00005007712	ENSLCRG00005007711	uhrf1bp1l (ENSLCRG00005006536)	anks1b (ENSLCRG00005006505)	apaf1 (ENSLCRG00005006390)	tcp11l2 (ENSLCRG00005006367)	ENSLCRG00005006364	ENSLCRG00005006355	scyl2 (ENSLCRG00005006328)	si:ch211-244b2.3 (ENSLCRG00005006324)	si:ch211-244b2.4 (ENSLCRG00005006321)	epyc (ENSLCRG00005006316)	kera (ENSLCRG00005006315)
Gilthead seabream	MODERN SPECIES	5	ADA2 (ENSSAUG00010012988)	atp6v1e1b (ENSSAUG00010012955)	spic (ENSSAUG00010012948)	ENSSAUG00010012945	mybpc1 (ENSSAUG00010012703)	chpt1 (ENSSAUG00010012670)	gnptab (ENSSAUG00010012649)	dram1 (ENSSAUG00010012634)	washc3 (ENSSAUG00010012629)	ENSSAUG00010012626	ENSSAUG00010012622	ENSSAUG00010012620	mcat (ENSSAUG00010012618) #19	ENSSAUG00010012617	ttll1 (ENSSAUG00010012614) #21	pacsin2 (ENSSAUG00010012595) #22	arfgap3 (ENSSAUG00010012591) #23	ENSSAUG00010012587	ENSSAUG00010012586	ENSSAUG00010012583	uhrf1bp1l (ENSSAUG00010012328)	anks1b (ENSSAUG00010012290)	apaf1 (ENSSAUG00010012185)	tcp11l2 (ENSSAUG00010012162)	FUT9 (ENSSAUG00010012158)	FUT9 (ENSSAUG00010012157)	FUT9 (ENSSAUG00010012154)	FUT9 (ENSSAUG00010012153)	FUT9 (ENSSAUG00010012151)	FUT9 (ENSSAUG00010012150)	ENSSAUG00010012149
Percomorphaceae_D	ANCESTRAL SPECIES	22	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT00940000153582.a.m.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT01030000234980	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00950000183116.a.a	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000154572.g.b	ENSGT00940000157710	ENSGT00940000157835	ENSGT00940000155095.i.b.b	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b
Anabantaria	ANCESTRAL SPECIES	21	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT00950000183169.B	ENSGT00940000168691	ENSGT01100000263519.E.b.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT01030000234980	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00950000183116.a.a	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000157710	ENSGT00940000157835	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a	ENSGT00940000157574	ENSGT00940000158968	ENSGT00940000158177.b
Zig-zag eel	MODERN SPECIES	15	ENSMAMG00000013101	ENSMAMG00000013065	atp6v1e1b (ENSMAMG00000013022)	spic (ENSMAMG00000012999)	ENSMAMG00000012991	mybpc1 (ENSMAMG00000012896)	chpt1 (ENSMAMG00000012846)	gnptab (ENSMAMG00000012781)	dram1 (ENSMAMG00000028429)	washc3 (ENSMAMG00000012747)	ENSMAMG00000012734	ENSMAMG00000012729	ENSMAMG00000012716	MCAT (ENSMAMG00000026461) #19	ttll1 (ENSMAMG00000012675) #21	pacsin2 (ENSMAMG00000012636) #22	arfgap3 (ENSMAMG00000012603) #23	IKBIP (ENSMAMG00000024576)	ENSMAMG00000012559	ENSMAMG00000012548	uhrf1bp1l (ENSMAMG00000012506)	ENSMAMG00000012493	ENSMAMG00000012379	apaf1 (ENSMAMG00000012291)	ENSMAMG00000012270	ENSMAMG00000012235	ENSMAMG00000012148	ENSMAMG00000026388	si:ch211-244b2.4 (ENSMAMG00000012121)	epyc (ENSMAMG00000012105)	kera (ENSMAMG00000012100)
Anabantoidei	ANCESTRAL SPECIES	21	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00940000168691	ENSGT01100000263519.E.b.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT01030000234980	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00950000183116.a.a	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000157710	ENSGT00940000157835	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a	ENSGT00940000157574	ENSGT00940000158968	ENSGT00940000158177.b
Siamese fighting fish	MODERN SPECIES	20	ENSBSLG00000017028	ENSBSLG00000017007	atp6v1e1b (ENSBSLG00000016687)	spic (ENSBSLG00000015993)	ENSBSLG00000015990	mybpc1 (ENSBSLG00000013838)	chpt1 (ENSBSLG00000013714)	gnptab (ENSBSLG00000013665)	dram1 (ENSBSLG00000013649)	ENSBSLG00000013636	ENSBSLG00000013628	ENSBSLG00000013103	mcat (ENSBSLG00000012794) #19	ENSBSLG00000012792	ttll1 (ENSBSLG00000012787) #21	pacsin2 (ENSBSLG00000012781) #22	arfgap3 (ENSBSLG00000012708) #23	IKBIP (ENSBSLG00000012703)	ENSBSLG00000012701	ENSBSLG00000012696	uhrf1bp1l (ENSBSLG00000012485)	anks1b (ENSBSLG00000011808)	apaf1 (ENSBSLG00000011042)	tcp11l2 (ENSBSLG00000010985)	ENSBSLG00000010973	scyl2 (ENSBSLG00000010899)	ENSBSLG00000010862	si:ch211-244b2.4 (ENSBSLG00000010787)	epyc (ENSBSLG00000010748)	kera (ENSBSLG00000010731)	lum (ENSBSLG00000010713)
Climbing perch	MODERN SPECIES	14	ENSATEG00000028213	ENSATEG00000019918	atp6v1e1b (ENSATEG00000019906)	ENSATEG00000019900	spic (ENSATEG00000019894)	mybpc1 (ENSATEG00000019825)	chpt1 (ENSATEG00000025233)	gnptab (ENSATEG00000019736)	dram1 (ENSATEG00000025469)	ENSATEG00000026823	ENSATEG00000019669	ENSATEG00000025840	ENSATEG00000019398	MCAT (ENSATEG00000028638) #19	ttll1 (ENSATEG00000019361) #21	pacsin2 (ENSATEG00000019299) #22	arfgap3 (ENSATEG00000019276) #23	ENSATEG00000019265	ENSATEG00000019232	ENSATEG00000019201	uhrf1bp1l (ENSATEG00000019174)	ENSATEG00000019162	ENSATEG00000019046	apaf1 (ENSATEG00000019013)	ENSATEG00000018990	ENSATEG00000018962	scyl2 (ENSATEG00000018903)	si:ch211-244b2.3 (ENSATEG00000018871)	si:ch211-244b2.4 (ENSATEG00000018837)	epyc (ENSATEG00000018806)	kera (ENSATEG00000018788)
Carangaria	ANCESTRAL SPECIES	22	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT00940000153582.a.m.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT01030000234980	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00950000183116.a.a	ENSGT00940000154572.h	ENSGT00940000154572.g.b	ENSGT00940000157710	ENSGT00940000157835	ENSGT00940000155095.i.b.b	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b
Carangaria_A	ANCESTRAL SPECIES	21	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT00940000153582.a.m.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT01030000234980	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00950000183116.a.a	ENSGT00940000154572.h	ENSGT00940000157710	ENSGT00940000157835	ENSGT00940000155095.i.b.b	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b	ENSGT00940000157574
Seriola	ANCESTRAL SPECIES	9	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT00940000153582.a.m.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000157710	ENSGT00940000157835	ENSGT00940000155095.i.b.b	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b	ENSGT00940000157574	ENSGT00940000158968
Greater amberjack	MODERN SPECIES	60	GALNT8 (ENSSDUG00000000286)	ADA2 (ENSSDUG00000000494)	atp6v1e1b (ENSSDUG00000000530)	spic (ENSSDUG00000000538)	ENSSDUG00000000543	mybpc1 (ENSSDUG00000000563)	chpt1 (ENSSDUG00000000642)	gnptab (ENSSDUG00000000679)	dram1 (ENSSDUG00000000760)	washc3 (ENSSDUG00000000785)	ENSSDUG00000000821	ENSSDUG00000000832	ENSSDUG00000000963	mcat (ENSSDUG00000000979) #19	ttll1 (ENSSDUG00000000990) #21	pacsin2 (ENSSDUG00000001035) #22	arfgap3 (ENSSDUG00000001101) #23	ENSSDUG00000001128	ENSSDUG00000001133	uhrf1bp1l (ENSSDUG00000001171)	ENSSDUG00000001449	anks1b (ENSSDUG00000001484)	apaf1 (ENSSDUG00000001603)	tcp11l2 (ENSSDUG00000001701)	FUT9 (ENSSDUG00000001739)	FUT9 (ENSSDUG00000001785)	ENSSDUG00000001819	scyl2 (ENSSDUG00000001846)	si:ch211-244b2.3 (ENSSDUG00000001944)	si:ch211-244b2.4 (ENSSDUG00000001958)	si:dkeyp-38g8.5 (ENSSDUG00000001977)
Yellowtail amberjack	MODERN SPECIES	2783		atp6v1e1b (ENSSLDG00000021864)	spic (ENSSLDG00000021842)	ENSSLDG00000021834	mybpc1 (ENSSLDG00000021568)	chpt1 (ENSSLDG00000021517)	ENSSLDG00000021504	gnptab (ENSSLDG00000021469)	dram1 (ENSSLDG00000021453)	washc3 (ENSSLDG00000021435)	ENSSLDG00000021415	ENSSLDG00000021393	ENSSLDG00000021345	mcat (ENSSLDG00000021309) #19	ttll1 (ENSSLDG00000021285) #21	pacsin2 (ENSSLDG00000021199) #22	arfgap3 (ENSSLDG00000021108) #23	ENSSLDG00000021056	ENSSLDG00000021069	ENSSLDG00000021041	uhrf1bp1l (ENSSLDG00000020881)	anks1b (ENSSLDG00000020801)	apaf1 (ENSSLDG00000020771)	tcp11l2 (ENSSLDG00000020756)	FUT9 (ENSSLDG00000020741)	FUT9 (ENSSLDG00000020719)	DEPDC4 (ENSSLDG00000020699)	scyl2 (ENSSLDG00000020602)	ENSSLDG00000020544	si:ch211-244b2.4 (ENSSLDG00000020508)	si:dkeyp-38g8.5 (ENSSLDG00000020484)
Barramundi perch	MODERN SPECIES	365	ENSLCAG00010022902	spic (ENSLCAG00010022903)	ENSLCAG00010022906	mybpc1 (ENSLCAG00010022931)	chpt1 (ENSLCAG00010022983)	ENSLCAG00010022990	gnptab (ENSLCAG00010023003)	dram1 (ENSLCAG00010023009)	washc3 (ENSLCAG00010023012)	ENSLCAG00010023019	ENSLCAG00010023028	ENSLCAG00010023032	mcat (ENSLCAG00010023037) #19	ENSLCAG00010023040	ttll1 (ENSLCAG00010023046) #21	pacsin2 (ENSLCAG00010023058) #22	arfgap3 (ENSLCAG00010023086) #23	IKBIP (ENSLCAG00010023140)	ENSLCAG00010023143	uhrf1bp1l (ENSLCAG00010023154)	ENSLCAG00010023171	anks1b (ENSLCAG00010023194)
Pleuronectoidei	ANCESTRAL SPECIES	16	ENSGT00390000002730.e.b	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT00940000168691	ENSGT01100000263519.E.b.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT01030000234980	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000154572.g.b	ENSGT00940000157710	ENSGT00940000157835	ENSGT00940000155095.i.b.b.m	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT00940000164581.B	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b	ENSGT00940000157574
Tongue sole	MODERN SPECIES	18	rad51ap1 (ENSCSEG00000006902)	ADA2 (ENSCSEG00000006894)	atp6v1e1b (ENSCSEG00000006883)	spic (ENSCSEG00000006869)	ENSCSEG00000006866	mybpc1 (ENSCSEG00000006852)	chpt1 (ENSCSEG00000006843)	gnptab (ENSCSEG00000006807)	dram1 (ENSCSEG00000006790)	washc3 (ENSCSEG00000006781)	ENSCSEG00000006766	ENSCSEG00000006703	ENSCSEG00000006676	mcat (ENSCSEG00000006666) #19	ttll1 (ENSCSEG00000006650) #21	pacsin2 (ENSCSEG00000006637) #22	arfgap3 (ENSCSEG00000006615) #23	ENSCSEG00000006608	ENSCSEG00000006597	uhrf1bp1l (ENSCSEG00000006558)	ENSCSEG00000006550	ENSCSEG00000006545	ENSCSEG00000006543	apaf1 (ENSCSEG00000006505)	tcp11l2 (ENSCSEG00000006496)	FUT9 (ENSCSEG00000006489)	FUT9 (ENSCSEG00000006487)	FUT9 (ENSCSEG00000006483)	scyl2 (ENSCSEG00000006450)	ENSCSEG00000006438	si:dkeyp-38g8.5 (ENSCSEG00000006433)
Turbot	MODERN SPECIES	11	ENSSMAG00000004776	atp6v1e1b (ENSSMAG00000003634)	spic (ENSSMAG00000032704)	ENSSMAG00000037230	mybpc1 (ENSSMAG00000003578)	chpt1 (ENSSMAG00000003564)	gnptab (ENSSMAG00000003501)	dram1 (ENSSMAG00000003443)	ENSSMAG00000003425	ENSSMAG00000003410	ENSSMAG00000029296	ENSSMAG00000003390	ENSSMAG00000003377	MCAT (ENSSMAG00000036603) #19	ttll1 (ENSSMAG00000003309) #21	pacsin2 (ENSSMAG00000003262) #22	arfgap3 (ENSSMAG00000003248) #23	ENSSMAG00000028028	ENSSMAG00000003197	uhrf1bp1l (ENSSMAG00000003107)	ENSSMAG00000002919	apaf1 (ENSSMAG00000002753)	ENSSMAG00000002712	ENSSMAG00000002702	ENSSMAG00000002674	scyl2 (ENSSMAG00000002554)	si:ch211-244b2.3 (ENSSMAG00000002442)	si:ch211-244b2.4 (ENSSMAG00000002425)	si:dkeyp-38g8.5 (ENSSMAG00000002384)	epyc (ENSSMAG00000002361)	kera (ENSSMAG00000002343)
Ovalentaria	ANCESTRAL SPECIES	22	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT00940000153582.a.m.b	ENSGT01100000263519.E.b.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT01030000234980	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000177480.a	ENSGT00940000154572.g.b	ENSGT00940000157710	ENSGT00940000157835	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b	ENSGT00940000157574
Atherinomorphae	ANCESTRAL SPECIES	21	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT00940000153582.a.m.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT01030000234980	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000157710	ENSGT00940000157835	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b	ENSGT00940000157574	ENSGT01100000264068	ENSGT00940000158968
Cyprinodontiformes	ANCESTRAL SPECIES	19	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT01100000263519.E.b.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT01030000234980	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000157710	ENSGT00940000157835	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b	ENSGT00940000157574	ENSGT01100000264068	ENSGT00940000158968
Aplocheiloidei	ANCESTRAL SPECIES	14	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT00940000153582.a.m.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000157710	ENSGT00940000157835	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b	ENSGT00940000157574	ENSGT00940000158968	ENSGT00940000158177.b
Mangrove rivulus	MODERN SPECIES	19	rad51ap1 (ENSKMAG00000010739)	GALNT8 (ENSKMAG00000010618)	ADA2 (ENSKMAG00000010554)	atp6v1e1b (ENSKMAG00000010516)	spic (ENSKMAG00000010487)	ENSKMAG00000010471	mybpc1 (ENSKMAG00000010418)	chpt1 (ENSKMAG00000010383)	gnptab (ENSKMAG00000010288)	dram1 (ENSKMAG00000010245)	washc3 (ENSKMAG00000010212)	ENSKMAG00000010200	ENSKMAG00000010178	ENSKMAG00000010139	ttll1 (ENSKMAG00000010091) #21	pacsin2 (ENSKMAG00000010039) #22	arfgap3 (ENSKMAG00000009990) #23	ENSKMAG00000009977	ENSKMAG00000009968	uhrf1bp1l (ENSKMAG00000009835)	anks1b (ENSKMAG00000009595)	apaf1 (ENSKMAG00000009512)	tcp11l2 (ENSKMAG00000009492)	ENSKMAG00000009476	scyl2 (ENSKMAG00000009396)	si:ch211-244b2.3 (ENSKMAG00000009347)	si:ch211-244b2.4 (ENSKMAG00000009331)	si:dkeyp-38g8.5 (ENSKMAG00000009306)	epyc (ENSKMAG00000009247)	kera (ENSKMAG00000009228)	lum (ENSKMAG00000009216)
Turquoise killifish	MODERN SPECIES	1610	ADA2 (ENSNFUG00015005968)	atp6v1e1b (ENSNFUG00015005953)	spic (ENSNFUG00015005937)	ENSNFUG00015005927	mybpc1 (ENSNFUG00015005654)	chpt1 (ENSNFUG00015005553)	ENSNFUG00015005535	zgc:113019 (ENSNFUG00015005524)	dram1 (ENSNFUG00015005513)	CCDC53 (ENSNFUG00015005505)	ENSNFUG00015005478	ENSNFUG00015005372	OLA.20856 (ENSNFUG00015005361)	MCAT (ENSNFUG00015005355) #19	TTLL1 (ENSNFUG00015005326) #21	PACSIN2 (ENSNFUG00015005272) #22	ENSNFUG00015005252	arfgap3 (ENSNFUG00015004659) #23	IKBIP (ENSNFUG00015004611)	ENSNFUG00015004606	ENSNFUG00015004603	uhrf1bp1l (ENSNFUG00015004470)	ENSNFUG00015004435	anks1b (ENSNFUG00015004405)	ENSNFUG00015004386	tcp11l2 (ENSNFUG00015004375)	DEPDC4 (ENSNFUG00015004366)	scyl2 (ENSNFUG00015004308)	ENSNFUG00015004284	si:ch211-244b2.4 (ENSNFUG00015004277)	ENSNFUG00015004268
Cyprinodontoidei	ANCESTRAL SPECIES	20	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT01100000263519.E.b.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT01030000234980	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000157710	ENSGT00940000157835	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT00940000164581.B	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b	ENSGT00940000157574	ENSGT01100000264068	ENSGT00940000158968
Poeciliinae	ANCESTRAL SPECIES	19	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT01100000263519.E.b.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT01030000234980	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000157710	ENSGT00940000157835	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b	ENSGT00940000157574	ENSGT00940000158968	ENSGT00940000158177.b
Poecilia	ANCESTRAL SPECIES	29	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT01100000263519.E.b.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT01030000234980	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000157710	ENSGT00940000157835	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b	ENSGT00940000157574	ENSGT00940000158968	ENSGT00940000158177.b
NAME_6	ANCESTRAL SPECIES	144	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT01100000263519.E.b.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT01030000234980	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000157710	ENSGT00940000157835	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b	ENSGT00940000157574	ENSGT00940000158968	ENSGT00940000158177.b
Amazon molly	MODERN SPECIES	758	atp6v1e1b (ENSPFOG00000010320)	ENSPFOG00000021678	spic (ENSPFOG00000010380)	ENSPFOG00000020472	mybpc1 (ENSPFOG00000010415)	chpt1 (ENSPFOG00000010683)	gnptab (ENSPFOG00000010807)	dram1 (ENSPFOG00000011093)	washc3 (ENSPFOG00000011097)	ENSPFOG00000011135	ENSPFOG00000020473	ENSPFOG00000011146	mcat (ENSPFOG00000011255) #19	ENSPFOG00000022481	ttll1 (ENSPFOG00000011289) #21	pacsin2 (ENSPFOG00000011411) #22	arfgap3 (ENSPFOG00000011554) #23	ENSPFOG00000011608	ENSPFOG00000011664	uhrf1bp1l (ENSPFOG00000011679)	ENSPFOG00000024697
Sailfin molly	MODERN SPECIES	362								ENSPLAG00000010458	dram1 (ENSPLAG00000010424)	washc3 (ENSPLAG00000010415)	ENSPLAG00000010390	ENSPLAG00000010376	ENSPLAG00000010063	mcat (ENSPLAG00000010048) #19	ttll1 (ENSPLAG00000010045) #21	pacsin2 (ENSPLAG00000010009) #22	arfgap3 (ENSPLAG00000009966) #23	ENSPLAG00000009948	ENSPLAG00000009920	uhrf1bp1l (ENSPLAG00000009881)	anks1b (ENSPLAG00000009858)
Guppy	MODERN SPECIES	454	GALNT8 (ENSPREG00000022881)	ADA2 (ENSPREG00000022887)	atp6v1e1b (ENSPREG00000022891)	spic (ENSPREG00000022899)	ENSPREG00000022906	mybpc1 (ENSPREG00000022909)	chpt1 (ENSPREG00000022922)	gnptab (ENSPREG00000022929)	dram1 (ENSPREG00000022934)	washc3 (ENSPREG00000022940)	ENSPREG00000022945	ENSPREG00000022959	ENSPREG00000022976	mcat (ENSPREG00000022982) #19	ttll1 (ENSPREG00000022989) #21	pacsin2 (ENSPREG00000022997) #22	arfgap3 (ENSPREG00000023004) #23	ENSPREG00000023017	ENSPREG00000023023	ENSPREG00000023024	uhrf1bp1l (ENSPREG00000023028)	anks1b (ENSPREG00000023036)	apaf1 (ENSPREG00000000752)	ENSPREG00000001131	ENSPREG00000001150	scyl2 (ENSPREG00000001218)	ENSPREG00000001533	si:ch211-244b2.4 (ENSPREG00000001561)	si:dkeyp-38g8.5 (ENSPREG00000001593)	EPYC (ENSPREG00000001638)	kera (ENSPREG00000001702)
Platyfish	MODERN SPECIES	8	fgf6b (ENSXMAG00000029319)	ENSXMAG00000004282	GALNT8 (ENSXMAG00000004265)	mybpc1 (ENSXMAG00000001498)	ENSXMAG00000026773	ENSXMAG00000027306	chpt1 (ENSXMAG00000001481)	gnptab (ENSXMAG00000001470)	dram1 (ENSXMAG00000001465)	washc3 (ENSXMAG00000001448)	ENSXMAG00000001447	ENSXMAG00000029748	ENSXMAG00000001421	mcat (ENSXMAG00000021275) #19	ttll1 (ENSXMAG00000027638) #21	pacsin2 (ENSXMAG00000001367) #22	arfgap3 (ENSXMAG00000001324) #23	ENSXMAG00000001321	ENSXMAG00000001319	uhrf1bp1l (ENSXMAG00000001296)	ENSXMAG00000025411	anks1b (ENSXMAG00000001252)	apaf1 (ENSXMAG00000018504)	tcp11l2 (ENSXMAG00000018543)	ENSXMAG00000018558	scyl2 (ENSXMAG00000018567)	si:ch211-244b2.3 (ENSXMAG00000018581)	si:ch211-244b2.4 (ENSXMAG00000018584)	si:dkeyp-38g8.5 (ENSXMAG00000026377)	epyc (ENSXMAG00000018588)	kera (ENSXMAG00000018602)
NAME_4	ANCESTRAL SPECIES	16	ENSGT00940000160161.e.a	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT00940000153582.a.m.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000157710	ENSGT00940000157835	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT00940000164581.B	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b	ENSGT00940000157574	ENSGT01100000264068	ENSGT00940000158968.j
Sheepshead minnow	MODERN SPECIES	929															ttll1 (ENSCVAG00000000314) #21	pacsin2 (ENSCVAG00000012038) #22	arfgap3 (ENSCVAG00000012126) #23	ENSCVAG00000012140	ENSCVAG00000012162	uhrf1bp1l (ENSCVAG00000012199)	anks1b (ENSCVAG00000012363)
Mummichog	MODERN SPECIES	2268								ENSFHEG00000005792	dram1 (ENSFHEG00000005781)	washc3 (ENSFHEG00000005762)	ENSFHEG00000000591	ENSFHEG00000005675	ENSFHEG00000005325	mcat (ENSFHEG00000005308) #19	ttll1 (ENSFHEG00000005277) #21	pacsin2 (ENSFHEG00000005223) #22	arfgap3 (ENSFHEG00000005194) #23	ENSFHEG00000005173	ENSFHEG00000005152	uhrf1bp1l (ENSFHEG00000005121)	anks1b (ENSFHEG00000005075)	apaf1 (ENSFHEG00000004836)	tcp11l2 (ENSFHEG00000004788)	ENSFHEG00000004783	scyl2 (ENSFHEG00000004766)	si:ch211-244b2.3 (ENSFHEG00000004656)	si:ch211-244b2.4 (ENSFHEG00000004642)	si:dkeyp-38g8.5 (ENSFHEG00000004625)	epyc (ENSFHEG00000004613)	kera (ENSFHEG00000004459)	lum (ENSFHEG00000004449)
Oryzias	ANCESTRAL SPECIES	20	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT00940000153582.a.m.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT01030000234980	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000157710	ENSGT00940000157835	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676.f	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b	ENSGT00940000157574	ENSGT00940000158968	ENSGT00940000158177.b
Oryzias_a	ANCESTRAL SPECIES	15	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT00940000153582.a.m.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT01030000234980	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000157710	ENSGT00940000157835	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676.f	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b	ENSGT00940000157574	ENSGT00940000158968	ENSGT00940000158177.b
Chinese medaka	DUPLICATION
Chinese medaka	MODERN SPECIES	52	atp6v1e1b (ENSOSIG00000020873)	ENSOSIG00000020860	spic (ENSOSIG00000020853)	ENSOSIG00000020844	chpt1 (ENSOSIG00000020799)	gnptab (ENSOSIG00000020780)	dram1 (ENSOSIG00000020770)	washc3 (ENSOSIG00000020765)	ENSOSIG00000020764	ENSOSIG00000020763	ENSOSIG00000020762	ENSOSIG00000020759	MCAT (ENSOSIG00000020758) #19	ENSOSIG00000020757	ttll1 (ENSOSIG00000020755) #21	pacsin2 (ENSOSIG00000020745) #22	arfgap3 (ENSOSIG00000020737) #23	IKBIP (ENSOSIG00000020726)	ENSOSIG00000020714	uhrf1bp1l (ENSOSIG00000020583)	anks1b (ENSOSIG00000020564)	apaf1 (ENSOSIG00000019941)	tcp11l2 (ENSOSIG00000019881)	ENSOSIG00000019878	scyl2 (ENSOSIG00000019870)	ENSOSIG00000019859	si:ch211-244b2.4 (ENSOSIG00000019857)	si:dkeyp-38g8.5 (ENSOSIG00000019852)	epyc (ENSOSIG00000019850)	kera (ENSOSIG00000019848)	lum (ENSOSIG00000019847)
Chinese medaka	MODERN SPECIES	51	rad51ap1 (ENSOSIG00000001165)	ENSOSIG00000001157	ADA2 (ENSOSIG00000001155)	atp6v1e1b (ENSOSIG00000001152)	spic (ENSOSIG00000001147)	ENSOSIG00000001145	chpt1 (ENSOSIG00000000153)	gnptab (ENSOSIG00000000122)	dram1 (ENSOSIG00000000069)	washc3 (ENSOSIG00000000058)	ENSOSIG00000021536	ENSOSIG00000021530	ENSOSIG00000021526	MCAT (ENSOSIG00000021525) #19	ttll1 (ENSOSIG00000021524) #21	pacsin2 (ENSOSIG00000021517) #22	arfgap3 (ENSOSIG00000021515) #23	ENSOSIG00000021513	IKBIP (ENSOSIG00000021511)	uhrf1bp1l (ENSOSIG00000021508)	anks1b (ENSOSIG00000021498)	apaf1 (ENSOSIG00000021425)	tcp11l2 (ENSOSIG00000021375)	ENSOSIG00000021372	scyl2 (ENSOSIG00000021363)	ENSOSIG00000021361	si:ch211-244b2.4 (ENSOSIG00000021357)	si:dkeyp-38g8.5 (ENSOSIG00000021356)	epyc (ENSOSIG00000021354)	kera (ENSOSIG00000021352)	lum (ENSOSIG00000021350)
Japanese Medaka HdrR	MODERN SPECIES	15	atp6v1e1b (ENSORLG00000015787)	ENSORLG00000022679	spic (ENSORLG00000023569)	ENSORLG00000015776	mybpc1 (ENSORLG00000015767)	chpt1 (ENSORLG00000015697)	gnptab (ENSORLG00000015673)	dram1 (ENSORLG00000015662)	washc3 (ENSORLG00000015655)	ENSORLG00000022558	ENSORLG00000015646	ENSORLG00000024339	mcat (ENSORLG00000015629) #19	ENSORLG00000025654	ttll1 (ENSORLG00000015623) #21	pacsin2 (ENSORLG00000015594) #22	arfgap3 (ENSORLG00000027675) #23	IKBIP (ENSORLG00000015552)	ENSORLG00000015544	uhrf1bp1l (ENSORLG00000015538)	anks1b (ENSORLG00000015497)	ENSORLG00000025240	ENSORLG00000022959	apaf1 (ENSORLG00000015449)	tcp11l2 (ENSORLG00000015425)	ENSORLG00000015415	scyl2 (ENSORLG00000015396)	ENSORLG00000015352	si:ch211-244b2.4 (ENSORLG00000015345)	si:dkeyp-38g8.5 (ENSORLG00000015334)	epyc (ENSORLG00000029785)
Oryzias_b	ANCESTRAL SPECIES	19	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT00940000153582.a.m.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT01030000234980	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000157710	ENSGT00940000157835	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676.e	ENSGT01000000214676.f	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b	ENSGT00940000157574	ENSGT00940000158968
Indian medaka	DUPLICATION
Indian medaka	MODERN SPECIES	402																pacsin2 (ENSOMEG00000020496) #22
Indian medaka	MODERN SPECIES	2	atp6v1e1b (ENSOMEG00000004969)	ENSOMEG00000004981	spic (ENSOMEG00000005008)	ENSOMEG00000005027	mybpc1 (ENSOMEG00000005189)	chpt1 (ENSOMEG00000005231)	gnptab (ENSOMEG00000005296)	dram1 (ENSOMEG00000005329)	washc3 (ENSOMEG00000005345)	ENSOMEG00000005361	ENSOMEG00000005420	ENSOMEG00000005452	mcat (ENSOMEG00000005466) #19	ENSOMEG00000005476	ttll1 (ENSOMEG00000005534) #21	pacsin2 (ENSOMEG00000005606) #22	arfgap3 (ENSOMEG00000005631) #23	ENSOMEG00000005651	ENSOMEG00000005666	uhrf1bp1l (ENSOMEG00000005823)	anks1b (ENSOMEG00000005882)	apaf1 (ENSOMEG00000000126)	tcp11l2 (ENSOMEG00000005951)	DEPDC4 (ENSOMEG00000005967)	scyl2 (ENSOMEG00000006012)	ENSOMEG00000006032	ENSOMEG00000006048	si:ch211-244b2.4 (ENSOMEG00000006058)	si:dkeyp-38g8.5 (ENSOMEG00000000137)	epyc (ENSOMEG00000006079)	kera (ENSOMEG00000006086)
Javanese ricefish	MODERN SPECIES	15	atp6v1e1b (ENSOJAG00000022078)	ENSOJAG00000022094	spic (ENSOJAG00000022098)	ENSOJAG00000022100	mybpc1 (ENSOJAG00000022114)	chpt1 (ENSOJAG00000022162)	gnptab (ENSOJAG00000022183)	dram1 (ENSOJAG00000022195)	washc3 (ENSOJAG00000022199)	ENSOJAG00000022211	ENSOJAG00000022217	ENSOJAG00000022285	mcat (ENSOJAG00000022292) #19	ENSOJAG00000022309	ttll1 (ENSOJAG00000022321) #21	pacsin2 (ENSOJAG00000022339) #22	arfgap3 (ENSOJAG00000022364) #23	IKBIP (ENSOJAG00000022377)	ENSOJAG00000022382	anks1b (ENSOJAG00000022495)	apaf1 (ENSOJAG00000022532)	tcp11l2 (ENSOJAG00000022552)	ENSOJAG00000022579	scyl2 (ENSOJAG00000022587)	ENSOJAG00000009030	ENSOJAG00000009045	si:ch211-244b2.4 (ENSOJAG00000009092)	epyc (ENSOJAG00000009122)	kera (ENSOJAG00000009135)	lum (ENSOJAG00000009146)	dcn (ENSOJAG00000009156)
Ovalentaria_B	ANCESTRAL SPECIES	23	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT01100000263519.E.b.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000177480.a	ENSGT00940000154572.g.b	ENSGT00940000157710	ENSGT00940000157835	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b	ENSGT00940000157574
Pomacentridae	ANCESTRAL SPECIES	53					ENSGT00940000155067.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT00950000183169.B	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000177480.a	ENSGT00940000154572.g.b	ENSGT00940000157710	ENSGT00940000157835	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b	ENSGT00940000157574
Pomacentridae_A	ANCESTRAL SPECIES	23	ENSGT00940000155118	ENSGT00590000083189.d	ENSGT00940000155765.s.b	ENSGT00940000155067.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT01100000263519.E.b.b	ENSGT00950000183169.B	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000177480.a	ENSGT00940000154572.g.b	ENSGT00940000157710	ENSGT00940000157835	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b	ENSGT00940000157574
Amphiprion	ANCESTRAL SPECIES	53					ENSGT00940000155067.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT00950000183169.B	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000157710	ENSGT00940000157835	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b	ENSGT00940000157574	ENSGT00940000158968	ENSGT00940000158177.b
Orange clownfish	MODERN SPECIES	13	CPNE8 (ENSAPEG00000009053)	alg10 (ENSAPEG00000008990)	tprkb (ENSAPEG00000008986)	spic (ENSAPEG00000008947)	mybpc1 (ENSAPEG00000008858)	chpt1 (ENSAPEG00000008824)	gnptab (ENSAPEG00000008702)	dram1 (ENSAPEG00000008682)	washc3 (ENSAPEG00000008644)	ENSAPEG00000008628	ENSAPEG00000008602	ENSAPEG00000008581	ENSAPEG00000008564	mcat (ENSAPEG00000008552) #19	ttll1 (ENSAPEG00000008515) #21	pacsin2 (ENSAPEG00000008437) #22	arfgap3 (ENSAPEG00000008406) #23	IKBIP (ENSAPEG00000008369)	ENSAPEG00000008352	uhrf1bp1l (ENSAPEG00000008081)	anks1b (ENSAPEG00000007920)	apaf1 (ENSAPEG00000007835)	tcp11l2 (ENSAPEG00000007824)	ENSAPEG00000007791	scyl2 (ENSAPEG00000007681)	ENSAPEG00000007632	si:ch211-244b2.4 (ENSAPEG00000007620)	si:dkeyp-38g8.5 (ENSAPEG00000007561)	epyc (ENSAPEG00000007508)	kera (ENSAPEG00000007496)	lum (ENSAPEG00000007485)
Clown anemonefish	MODERN SPECIES	372	acvrl1 (ENSAOCG00000020048)	ACVR1B (ENSAOCG00000020086)	ENSAOCG00000001487	ENSAOCG00000001491	dhh (ENSAOCG00000020152)	GLA (ENSAOCG00000020192) ##35	RPL36A (ENSAOCG00000020210)	BTK (ENSAOCG00000020280)	timm8a (ENSAOCG00000002737)	zgc:101583 (ENSAOCG00000020304)	ENSAOCG00000020316	ENSAOCG00000020383	ENSAOCG00000020397	mcat (ENSAOCG00000020404) #19	ttll1 (ENSAOCG00000020434) #21	pacsin2 (ENSAOCG00000020511) #22	arfgap3 (ENSAOCG00000020601) #23	IKBIP (ENSAOCG00000020635)	ENSAOCG00000020646	uhrf1bp1l (ENSAOCG00000020670)
Spiny chromis	MODERN SPECIES	42	UTP20 (ENSAPOG00000002429)	arl1 (ENSAPOG00000002469)	DENND11 (ENSAPOG00000002500)	ENSAPOG00000002537	spic (ENSAPOG00000002560)	mybpc1 (ENSAPOG00000000056)	chpt1 (ENSAPOG00000002634)	gnptab (ENSAPOG00000002704)	dram1 (ENSAPOG00000002731)	washc3 (ENSAPOG00000002756)	ENSAPOG00000002764	ENSAPOG00000000062	ENSAPOG00000002982	mcat (ENSAPOG00000003016) #19	ttll1 (ENSAPOG00000003058) #21	pacsin2 (ENSAPOG00000003156) #22
Bicolor damselfish	MODERN SPECIES	833																pacsin2 (ENSSPAG00000002016) #22	arfgap3 (ENSSPAG00000001929) #23	ENSSPAG00000001912	ENSSPAG00000001906	uhrf1bp1l (ENSSPAG00000001864)	anks1b (ENSSPAG00000001796)
Cichlidae	ANCESTRAL SPECIES	24	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT01100000263519.E.b.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000157710	ENSGT00940000157835	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b	ENSGT00940000157574	ENSGT00940000158968	ENSGT00940000158177.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	21	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT01100000263519.E.b.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715.e #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000182271	ENSGT00940000157710	ENSGT00940000157835	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b	ENSGT00940000157574	ENSGT00940000158968
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	10	ENSGT00950000183113.b.b.c.b	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.a	ENSGT00940000155067.b.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT01100000263519.E.b.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715.e #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000182271	ENSGT00940000157710	ENSGT00940000157835	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b	ENSGT00940000157574	ENSGT00940000158968
Haplochromini	ANCESTRAL SPECIES	9	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.b.a	ENSGT00940000155067.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT01100000263519.E.b.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715.f.b #19	ENSGT00390000013715.e #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000182271	ENSGT00940000157710	ENSGT00940000157835	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT00940000164581.B	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b	ENSGT00940000157574	ENSGT00940000158968
Burton s mouthbrooder	MODERN SPECIES	818																pacsin2 (ENSHBUG00000003538) #22	arfgap3 (ENSHBUG00000003497) #23	ENSHBUG00000003478	ENSHBUG00000003456	uhrf1bp1l (ENSHBUG00000003431)	anks1b (ENSHBUG00000003274)	ENSHBUG00000003159
Haplochromini_A	ANCESTRAL SPECIES	9	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.b.a	ENSGT00940000155067.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT01100000263519.E.b.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715.f.b #19	ENSGT00390000013715.e #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000182271	ENSGT00940000157710	ENSGT00940000157835	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b	ENSGT00940000157574	ENSGT00940000158968
Haplochromini_B	ANCESTRAL SPECIES	11	ENSGT00390000002730.e.b	ENSGT00650000094663	ENSGT00940000155067.b.a	ENSGT00940000155067.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00390000014084	ENSGT01100000263519.E.b.b	ENSGT00940000165434	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715.f.b #19	ENSGT00390000013715.e #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00940000154572.h	ENSGT00940000157710	ENSGT00940000157835	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT00940000164581.B	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b	ENSGT00940000157574	ENSGT00940000158968	ENSGT00940000158177.b
Eastern happy	MODERN SPECIES	8	ADA2 (ENSACLG00000020373)	atp6v1e1b (ENSACLG00000020410)	spic (ENSACLG00000020444)	mybpc1 (ENSACLG00000020482)	chpt1 (ENSACLG00000020935)	gnptab (ENSACLG00000021005)	dram1 (ENSACLG00000021133)	washc3 (ENSACLG00000021169)	ENSACLG00000021233	ENSACLG00000021272	ENSACLG00000021286	MCAT (ENSACLG00000021397) #19	ENSACLG00000021648 #19	MCAT (ENSACLG00000021707) #19	ttll1 (ENSACLG00000021714) #21	pacsin2 (ENSACLG00000021744) #22	arfgap3 (ENSACLG00000021829) #23	ENSACLG00000021855	ENSACLG00000021874	ENSACLG00000021941	uhrf1bp1l (ENSACLG00000021952)	anks1b (ENSACLG00000022062)	ENSACLG00000022153	apaf1 (ENSACLG00000022176)	tcp11l2 (ENSACLG00000022214)	ENSACLG00000022256	scyl2 (ENSACLG00000022310)	si:ch211-244b2.3 (ENSACLG00000022380)	si:ch211-244b2.4 (ENSACLG00000022403)	si:dkeyp-38g8.5 (ENSACLG00000022438)	epyc (ENSACLG00000022420)
Zebra mbuna	MODERN SPECIES	1099	ENSMZEG00005003441	ENSMZEG00005003446	spic (ENSMZEG00005003465)	mybpc1 (ENSMZEG00005003483)	chpt1 (ENSMZEG00005003555)	gnptab (ENSMZEG00005003603)	dram1 (ENSMZEG00005003687)	washc3 (ENSMZEG00005003720)	ENSMZEG00005003750	ENSMZEG00005003759	ENSMZEG00005003794	ENSMZEG00005003873 #19	MCAT (ENSMZEG00005003898) #19	MCAT (ENSMZEG00005004882) #19	ttll1 (ENSMZEG00005004921) #21	pacsin2 (ENSMZEG00005004949) #22	arfgap3 (ENSMZEG00005004994) #23	ENSMZEG00005005057	ENSMZEG00005005068	uhrf1bp1l (ENSMZEG00005005085)	anks1b (ENSMZEG00005005137)	apaf1 (ENSMZEG00005005271)	tcp11l2 (ENSMZEG00005005314)	ENSMZEG00005005331	scyl2 (ENSMZEG00005005348)	si:ch211-244b2.3 (ENSMZEG00005005381)	si:ch211-244b2.4 (ENSMZEG00005005397)	si:dkeyp-38g8.5 (ENSMZEG00005005404)	epyc (ENSMZEG00005005416)	kera (ENSMZEG00005005437)	lum (ENSMZEG00005005454)
P. nyererei	MODERN SPECIES	347															ttll1 (ENSPNYG00000002044) #21	pacsin2 (ENSPNYG00000002019) #22	arfgap3 (ENSPNYG00000001947) #23	ENSPNYG00000001926	ENSPNYG00000001910	uhrf1bp1l (ENSPNYG00000001856)	ENSPNYG00000001813	anks1b (ENSPNYG00000001726)	ENSPNYG00000001696	apaf1 (ENSPNYG00000001602)	tcp11l2 (ENSPNYG00000001534)	ENSPNYG00000001482	scyl2 (ENSPNYG00000001469)	ENSPNYG00000001439	si:ch211-244b2.4 (ENSPNYG00000001424)	epyc (ENSPNYG00000001335)	kera (ENSPNYG00000001289)
Lyretail cichlid	MODERN SPECIES	291	ADA2 (ENSNBRG00000009273)	atp6v1e1b (ENSNBRG00000009246)	ENSNBRG00000009237	spic (ENSNBRG00000009212)	ENSNBRG00000009204	mybpc1 (ENSNBRG00000009045)	chpt1 (ENSNBRG00000008915)	gnptab (ENSNBRG00000008859)	dram1 (ENSNBRG00000008841)	washc3 (ENSNBRG00000008811)	ENSNBRG00000008771	ENSNBRG00000008721	ENSNBRG00000008695	mcat (ENSNBRG00000008678) #19	ttll1 (ENSNBRG00000008651) #21	pacsin2 (ENSNBRG00000008592) #22	ENSNBRG00000008564 #23	IKBIP (ENSNBRG00000008541)	uhrf1bp1l (ENSNBRG00000008275)	anks1b (ENSNBRG00000008153)	ENSNBRG00000008092	apaf1 (ENSNBRG00000007523)	tcp11l2 (ENSNBRG00000007474)	ENSNBRG00000007440	scyl2 (ENSNBRG00000007169)	ENSNBRG00000007125	si:ch211-244b2.4 (ENSNBRG00000007103)	si:dkeyp-38g8.5 (ENSNBRG00000007068)	epyc (ENSNBRG00000007038)	kera (ENSNBRG00000007031)	lum (ENSNBRG00000007027)
Nile tilapia	MODERN SPECIES	8	ADA2 (ENSONIG00000000020)	atp6v1e1b (ENSONIG00000000021)	ENSONIG00000029892	spic (ENSONIG00000000031)	ENSONIG00000031554	mybpc1 (ENSONIG00000000034)	chpt1 (ENSONIG00000000048)	gnptab (ENSONIG00000000050)	dram1 (ENSONIG00000000053)	washc3 (ENSONIG00000000054)	ENSONIG00000000057	ENSONIG00000031740	ENSONIG00000000058	MCAT (ENSONIG00000011389) #19	ttll1 (ENSONIG00000011392) #21	pacsin2 (ENSONIG00000011394) #22	arfgap3 (ENSONIG00000011404) #23	ENSONIG00000011413	ENSONIG00000011415	uhrf1bp1l (ENSONIG00000011416)	anks1b (ENSONIG00000011422)	ENSONIG00000039975	apaf1 (ENSONIG00000011426)	tcp11l2 (ENSONIG00000011431)	ENSONIG00000011437	scyl2 (ENSONIG00000011440)	si:ch211-244b2.3 (ENSONIG00000030041)	si:ch211-244b2.4 (ENSONIG00000011444)	si:dkeyp-38g8.5 (ENSONIG00000011448)	epyc (ENSONIG00000011449)	kera (ENSONIG00000011450)
Midas cichlid	MODERN SPECIES	30	GALNT8 (ENSACIG00000001662)	ADA2 (ENSACIG00000001772)	atp6v1e1b (ENSACIG00000001791)	spic (ENSACIG00000001812)	ENSACIG00000001822	mybpc1 (ENSACIG00000001837)	chpt1 (ENSACIG00000001916)	gnptab (ENSACIG00000001951)	dram1 (ENSACIG00000002005)	ENSACIG00000002020	washc3 (ENSACIG00000002052)	ENSACIG00000002068	ENSACIG00000002246	mcat (ENSACIG00000002257) #19	ttll1 (ENSACIG00000002277) #21	pacsin2 (ENSACIG00000002313) #22	ENSACIG00000002333 #23	ARFGAP3 (ENSACIG00000002359) #23	ENSACIG00000002383	ENSACIG00000002402	uhrf1bp1l (ENSACIG00000002419)	anks1b (ENSACIG00000002599)	apaf1 (ENSACIG00000002681)	ENSACIG00000003006	tcp11l2 (ENSACIG00000003022)	DEPDC4 (ENSACIG00000003093)	scyl2 (ENSACIG00000003116)	ENSACIG00000003171	si:dkeyp-38g8.5 (ENSACIG00000003215)	epyc (ENSACIG00000003231)	kera (ENSACIG00000003343)
Cod	MODERN SPECIES	10	llph (ENSGMOG00000028944)	ENSGMOG00000003447	ENSGMOG00000003468	CCND2 (ENSGMOG00000015454)	ENSGMOG00000035923	ENSGMOG00000031407	FGF6 (ENSGMOG00000005194)	ENSGMOG00000015400	ENSGMOG00000009463	ENSGMOG00000031410	ENSGMOG00000032912	ENSGMOG00000031184	ENSGMOG00000009429	MCAT (ENSGMOG00000009417) #19	ttll1 (ENSGMOG00000009406) #21	pacsin2 (ENSGMOG00000009394) #22	arfgap3 (ENSGMOG00000009382) #23	ENSGMOG00000031485	ENSGMOG00000022543	ckap4 (ENSGMOG00000028425)	ENSGMOG00000009372	ENSGMOG00000009349	ENSGMOG00000009224	ENSGMOG00000034102	ENSGMOG00000011706	ENSGMOG00000011696	ENSGMOG00000037047	mtpn (ENSGMOG00000035183)	chrm2a (ENSGMOG00000033007)	ptn (ENSGMOG00000022986)	ENSGMOG00000002979
Protacanthopterygii	ANCESTRAL SPECIES	23	ENSGT00940000165713	ENSGT00940000167467	ENSGT00390000017324	ENSGT00940000158969	ENSGT00390000002793	ENSGT00390000008429.f	ENSGT01100000263519.E.b.b	ENSGT01100000263533.b.a.a.b	ENSGT00940000165434	ENSGT00390000005508.a.b	ENSGT00940000164836	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT01030000234980	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00600000084428.b	ENSGT00940000154572.g.a	ENSGT00940000157710	ENSGT00390000018647	ENSGT00940000157835	ENSGT00940000155095.i.b.b	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676	ENSGT00940000164581.A.a.a	ENSGT00640000091774.b	ENSGT00940000157574
Salmoninae	ANCESTRAL SPECIES	316				ENSGT01090000260033.b.h.b.b	ENSGT01030000234589.h.f.b.b.a.a.a.a	ENSGT01090000260033.b.g.b.a.b.a.b.b.b.a.a.b	ENSGT01090000260033.b.g.b.a.b.a.b.a.a.a.a	ENSGT01030000234589.h.f.b.b.a.a.a.b.b.a	ENSGT00940000165434.j	ENSGT00390000005508.a.b.c	ENSGT00940000164836.j	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT01030000234980	ENSGT00940000156720.q #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466.k #23	ENSGT00500000045001	ENSGT00390000015968.d	ENSGT00600000084428.b	ENSGT00940000154572.g.a.b	ENSGT00940000154572.g.a.a	ENSGT00940000157710	ENSGT00940000157835.h	ENSGT00940000155095.i.b.b.d	ENSGT00390000018647	ENSGT00940000157835.g	ENSGT00940000155095.i.b.b.c.a	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT01000000214676.c
Huchen	DUPLICATION
Huchen	MODERN SPECIES	1487	ENSHHUG00000031270	ENSHHUG00000031274	ENSHHUG00000031279	ENSHHUG00000031283	ENSHHUG00000031638	ENSHHUG00000031646	ENSHHUG00000031649	ENSHHUG00000031655	ENSHHUG00000031657	ENSHHUG00000031662	ENSHHUG00000031768	ENSHHUG00000031773	ENSHHUG00000031782	MCAT (ENSHHUG00000031795) #19	ttll1 (ENSHHUG00000031807) #21	pacsin2 (ENSHHUG00000031821) #22	arfgap3 (ENSHHUG00000031832) #23	ENSHHUG00000031846	ENSHHUG00000031852	uhrf1bp1l (ENSHHUG00000031861)
Huchen	MODERN SPECIES	657	ENSHHUG00000003064	ENSHHUG00000003068	ENSHHUG00000003076	ENSHHUG00000003090	ENSHHUG00000003100	ENSHHUG00000003103	ENSHHUG00000003117	ENSHHUG00000003132	ENSHHUG00000003134	selenoo2 (ENSHHUG00000003261)	ENSHHUG00000003335	ENSHHUG00000003344	ENSHHUG00000003359	MCAT (ENSHHUG00000003369) #19	ttll1 (ENSHHUG00000003392) #21	pacsin2 (ENSHHUG00000003408) #22	arfgap3 (ENSHHUG00000003508) #23	ENSHHUG00000003604	ENSHHUG00000003608	uhrf1bp1l (ENSHHUG00000003615)
Salmoninae_a	ANCESTRAL SPECIES	98	ENSGT01100000263519.E.b.b.c.a	ENSGT00950000182858.A.b.b.g.a.j	ENSGT01100000263495.D.b.b	ENSGT01090000260033.b.g.a.b.a.b.a	ENSGT00940000165434.i	ENSGT00390000005508.a.b.d	ENSGT00940000164836.j.b	ENSGT01090000260033.b.g.b.a.a.a.b.a.b	ENSGT01030000234589.h.f.b.b.a.a.a.b.b.a	ENSGT00940000165434.j	ENSGT00940000164836.i	ENSGT00950000183017.b.b.a.a.c.a	ENSGT00390000013715 #19	ENSGT01030000234980	ENSGT00940000156720.q #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466.k.a #23	ENSGT00500000045001.e.b	ENSGT00390000015968.d.a	ENSGT00600000084428.b	ENSGT00940000154572.g.a.b	ENSGT00940000154572.g.a.a	ENSGT00940000157710	ENSGT00940000157835.h	ENSGT00940000155095.i.b.b.d	ENSGT00390000018647	ENSGT00940000157835.g.a	ENSGT00940000155095.i.b.b.c.a.b	ENSGT00950000182976.a.a.c
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	25	ENSGT00940000163454.b.c	ENSGT00940000162179.e.b.a.a.b.d	ENSGT00530000063540.b.d.a.a	ENSGT00940000153744.B.k	ENSGT00390000009992.c.b.b	ENSGT01100000263519.D.c.b	ENSGT00390000002793.e	ENSGT00390000008429.f	ENSGT01100000263519.E.b.b.c.a	ENSGT00950000182858.A.b.b.g.a.j	ENSGT00390000005508.a.b.c	ENSGT00940000164836.j.a	ENSGT00950000183017.b.b.a.a.c.a.b	ENSGT01030000234980.a	ENSGT00940000156720.q #21	ENSGT00950000182973.a.c.b.i #22	ENSGT00940000158466.k.a #23	ENSGT00500000045001.e.b	ENSGT00500000045001.e.a	ENSGT00390000015968.d.a	ENSGT00600000084428.b.n	ENSGT00940000154572.g.a.a	ENSGT00940000157710.n	ENSGT01100000263473.a.b.g.a.a.b.a.b.a.a.b.a	ENSGT00390000018647	ENSGT00940000157835.g.a	ENSGT00940000155095.i.b.b.c.a.b	ENSGT00950000182976.a.a.c	ENSGT00880000138031.s	ENSGT01000000214676.d	ENSGT00940000164581.A.a.a.g
Atlantic salmon	MODERN SPECIES	26	ENSSSAG00000041910	ENSSSAG00000041932	ENSSSAG00000099329	ENSSSAG00000002678	ENSSSAG00000115424	ENSSSAG00000088834	ENSSSAG00000042037	ENSSSAG00000103996	ENSSSAG00000085954	ENSSSAG00000042233	ENSSSAG00000042294	ENSSSAG00000042380	ENSSSAG00000109159	ttll1 (ENSSSAG00000042404) #21	ENSSSAG00000113351	pacsin2 (ENSSSAG00000042519) #22	arfgap3 (ENSSSAG00000042538) #23	ENSSSAG00000084045	ENSSSAG00000099810	uhrf1bp1l (ENSSSAG00000042622)	ENSSSAG00000082628	apaf1 (ENSSSAG00000044247)	ENSSSAG00000084023	ENSSSAG00000054071	ENSSSAG00000002665	ENSSSAG00000098002	ENSSSAG00000114174	scyl2 (ENSSSAG00000115955)	ENSSSAG00000054938	si:dkeyp-38g8.5 (ENSSSAG00000083861)	epyc (ENSSSAG00000054919)
River trout	MODERN SPECIES	38	GBGT1 (ENSSTUG00000043651)	ENSSTUG00000043662	ENSSTUG00000043667	ENSSTUG00000043671	ENSSTUG00000043679	ENSSTUG00000043688	ENSSTUG00000043697	ENSSTUG00000043710	ENSSTUG00000043714	selenoo2 (ENSSTUG00000043736)	ENSSTUG00000043780	ENSSTUG00000043784	MCAT (ENSSTUG00000017338) #19	ENSSTUG00000017353	ttll1 (ENSSTUG00000017379) #21	pacsin2 (ENSSTUG00000017415) #22	arfgap3 (ENSSTUG00000017482) #23	ENSSTUG00000017510	ENSSTUG00000017513	uhrf1bp1l (ENSSTUG00000017544)	anks1b (ENSSTUG00000018227)	apaf1 (ENSSTUG00000018437)	ENSSTUG00000019795	ENSSTUG00000019808	tcp11l2 (ENSSTUG00000019829)	FUT9 (ENSSTUG00000019845)	FUT9 (ENSSTUG00000019855)	FUT9 (ENSSTUG00000019862)	ENSSTUG00000019868	scyl2 (ENSSTUG00000019896)	ENSSTUG00000020094
Salmo	ANCESTRAL SPECIES	92									ENSGT00940000165434.i	ENSGT00390000005508.a.b.d	ENSGT00940000164836.i	ENSGT00950000183017.b.b.a.a.c.a.a	ENSGT00390000013715 #19	ENSGT01030000234980.b	ENSGT00940000156720.r #21	ENSGT00950000182973.a.c.b.j #22	ENSGT00940000158466.k.b #23	ENSGT00500000045001.f	ENSGT00390000015968.d.b	ENSGT00600000084428.b.m	ENSGT00940000154572.g.a.b	ENSGT01100000263473.a.b.g.a.a.b.a.b.a.a.b.b	ENSGT00940000157710.m	ENSGT00940000157835.h	ENSGT00940000157835.g.b	ENSGT00940000155095.i.b.b.c.b	ENSGT00940000155095.i.b.b.c.a.a	ENSGT00950000182976.a.a.d	ENSGT00880000138031.t	ENSGT01000000214676.c	ENSGT00940000164581.A.a.a.h
Atlantic salmon	MODERN SPECIES	8	ENSSSAG00000114222	ENSSSAG00000081873	ENSSSAG00000121446	ENSSSAG00000117998	ENSSSAG00000116510	ENSSSAG00000042545	ENSSSAG00000042580	ENSSSAG00000042621	ENSSSAG00000098519	ENSSSAG00000042648	ENSSSAG00000082744	ENSSSAG00000042397	MCAT (ENSSSAG00000042943) #19	ENSSSAG00000083237	ttll1 (ENSSSAG00000012701) #21	pacsin2 (ENSSSAG00000013774) #22	ENSSSAG00000113241	arfgap3 (ENSSSAG00000014750) #23	ENSSSAG00000015054	ENSSSAG00000093283	ENSSSAG00000094007	ENSSSAG00000089363	uhrf1bp1l (ENSSSAG00000015227)	ENSSSAG00000043747	ENSSSAG00000120610	apaf1 (ENSSSAG00000015477)	ENSSSAG00000018912	ENSSSAG00000019094	ENSSSAG00000120410	ENSSSAG00000019400	ENSSSAG00000109817
River trout	MODERN SPECIES	34	ENSSTUG00000042738	ENSSTUG00000042729	ENSSTUG00000042537	ENSSTUG00000042518	ENSSTUG00000042503	ENSSTUG00000042457	ENSSTUG00000042415	ENSSTUG00000042008	ENSSTUG00000041950	ENSSTUG00000041919	ENSSTUG00000041836	ENSSTUG00000041805	MCAT (ENSSTUG00000041777) #19	ENSSTUG00000041766	ttll1 (ENSSTUG00000041701) #21	pacsin2 (ENSSTUG00000041513) #22	arfgap3 (ENSSTUG00000041455) #23	ENSSTUG00000041418	ENSSTUG00000041399	uhrf1bp1l (ENSSTUG00000040036)	ENSSTUG00000039975	anks1b (ENSSTUG00000039859)	ENSSTUG00000039831	ENSSTUG00000039818	apaf1 (ENSSTUG00000038551)	tcp11l2 (ENSSTUG00000038503)	FUT9 (ENSSTUG00000038493)	FUT9 (ENSSTUG00000038490)	ENSSTUG00000038470	scyl2 (ENSSTUG00000038285)	si:ch211-244b2.3 (ENSSTUG00000038205)
Oncorhynchus	DUPLICATION
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	138					ENSGT01090000260033.b.h.b.b	ENSGT01030000234589.h.f.b.b.a.a.a.a.c.a	ENSGT01090000260033.b.g.b.a.b.a.b.b.b.a.a.b	ENSGT01090000260033.b.g.a.b.a.a.a.a	ENSGT01030000234589.h.f.b.b.a.a.a.a.c.b	ENSGT00990000204656.a.a.a	ENSGT00940000165434.j	ENSGT00940000164836.j.a	ENSGT00950000183017.b.b.a.a.c.b	ENSGT00390000013715.k #19	ENSGT00940000156720.r #21	ENSGT00950000182973.a.c.b.k.a #22	ENSGT00940000158466.k.b #23	ENSGT00500000045001.e.b.b
Oncorhynchus_a	ANCESTRAL SPECIES	384														ENSGT00940000175661	ENSGT00940000156720.r #21	ENSGT00950000182973.a.c.b.k.a #22	ENSGT00940000158466.k.b #23
Coho salmon	MODERN SPECIES	10	ENSOKIG00005008262	ENSOKIG00005008245	ENSOKIG00005008194	ENSOKIG00005008177	ENSOKIG00005008170	ENSOKIG00005008160	ENSOKIG00005008146	ENSOKIG00005008135	ENSOKIG00005008132	ENSOKIG00005008119	ENSOKIG00005008064	ENSOKIG00005008041	ENSOKIG00005008031	ENSOKIG00005008012	ttll1 (ENSOKIG00005007938) #21	pacsin2 (ENSOKIG00005007847) #22	arfgap3 (ENSOKIG00005007823) #23	ENSOKIG00005007815	ENSOKIG00005007809	uhrf1bp1l (ENSOKIG00005007664)	ENSOKIG00005007646	ENSOKIG00005007630	ENSOKIG00005007621	apaf1 (ENSOKIG00005007268)	ENSOKIG00005007206	TCP11L2 (ENSOKIG00005007199)	FUT9 (ENSOKIG00005007194)	ENSOKIG00005007178	scyl2 (ENSOKIG00005007097)	ENSOKIG00005007068	si:ch211-244b2.4 (ENSOKIG00005007055)
Rainbow trout	MODERN SPECIES	6	ENSOMYG00000054581	ENSOMYG00000067612	ENSOMYG00000033459	ENSOMYG00000069472	ENSOMYG00000062277	ENSOMYG00000033568	ENSOMYG00000033507	ENSOMYG00000006094	ENSOMYG00000033489	ENSOMYG00000072408	ENSOMYG00000033610	ENSOMYG00000033645	ENSOMYG00000033667	MCAT (ENSOMYG00000033676) #19	ttll1 (ENSOMYG00000033697) #21	pacsin2 (ENSOMYG00000033726) #22	arfgap3 (ENSOMYG00000033735) #23	ENSOMYG00000033752	ENSOMYG00000033765	uhrf1bp1l (ENSOMYG00000033796)	ENSOMYG00000054848	ENSOMYG00000056533	apaf1 (ENSOMYG00000034118)	ENSOMYG00000077427	ENSOMYG00000034760	ENSOMYG00000034767	ENSOMYG00000034771	ENSOMYG00000034776	ENSOMYG00000034780	ENSOMYG00000034804	ENSOMYG00000077608
Oncorhynchus	ANCESTRAL SPECIES	315																ENSGT00950000182973.a.c.b.k.b #22	ENSGT00940000158466.k.a.b #23	ENSGT00500000045001.f
Oncorhynchus_a	ANCESTRAL SPECIES	83	ENSGT00950000183017.b.b.a.a.c.a	ENSGT00940000164836.i	ENSGT00950000183017.b.b.a.a.d	ENSGT00940000164836.j.a	ENSGT00950000183017.b.b.a.a.c.b	ENSGT00390000013715.l #19	ENSGT01030000234980	ENSGT00390000013715.k #19	ENSGT00940000156720.q #21	ENSGT00950000182973.a.c.b.l #22	ENSGT00940000158466.k.a.a.a #23	ENSGT00500000045001.e.a	ENSGT00390000015968.c	ENSGT00600000084428.b.o	ENSGT00940000154572.g.a.b	ENSGT00950000182973.a.c.b.k.b #22	ENSGT00940000158466.k.a.b #23	ENSGT00500000045001.f	ENSGT00940000158466.k.a.a.b #23	ENSGT00500000045001.e.b.a	ENSGT00390000015968.d.a	ENSGT00600000084428.b.p	ENSGT00940000154572.h	ENSGT01100000263473.a.b.g.a.a.b.a.b.a.a.b.a	ENSGT00940000157710.p.b	ENSGT00390000018647	ENSGT00940000157835.g.a	ENSGT00940000155095.i.b.b.c.a.b	ENSGT00940000155095.i.b.b.d.a	ENSGT00950000182976.a.a.c	ENSGT00880000138031.r.b
Coho salmon	MODERN SPECIES	29	ENSOKIG00005001871	ENSOKIG00005001812	ENSOKIG00005001773	ENSOKIG00005001767	ENSOKIG00005041243	ENSOKIG00005041227	ENSOKIG00005041208	ENSOKIG00005041199	ENSOKIG00005041029	selenoo2 (ENSOKIG00005041012)	ENSOKIG00005040996	ENSOKIG00005040956	mcat (ENSOKIG00005040916) #19	ENSOKIG00005040906	ttll1 (ENSOKIG00005040847) #21	pacsin2 (ENSOKIG00005040667) #22	arfgap3 (ENSOKIG00005040504) #23	ENSOKIG00005040467	ENSOKIG00005040459	uhrf1bp1l (ENSOKIG00005039481)	ENSOKIG00005039321	anks1b (ENSOKIG00005039178)	ENSOKIG00005039129	apaf1 (ENSOKIG00005038271)	ENSOKIG00005038162	tcp11l2 (ENSOKIG00005038105)	FUT9 (ENSOKIG00005038095)	ENSOKIG00005038053	SCYL2 (ENSOKIG00005037889)	ENSOKIG00005037833	si:dkeyp-38g8.5 (ENSOKIG00005037807)
Rainbow trout	MODERN SPECIES	13	ENSOMYG00000074749	ENSOMYG00000060790	ENSOMYG00000052565	ENSOMYG00000064131	ENSOMYG00000070445	ENSOMYG00000008414	ENSOMYG00000008390	ENSOMYG00000008271	ENSOMYG00000008108	ENSOMYG00000007901	ENSOMYG00000007824	MCAT (ENSOMYG00000007784) #19	ENSOMYG00000007712	ttll1 (ENSOMYG00000007689) #21	ENSOMYG00000068546	pacsin2 (ENSOMYG00000069903) #22	arfgap3 (ENSOMYG00000007670) #23	ENSOMYG00000007619	ENSOMYG00000051301	uhrf1bp1l (ENSOMYG00000007448)	ENSOMYG00000007276	ENSOMYG00000051593	ENSOMYG00000074038	ENSOMYG00000007187	apaf1 (ENSOMYG00000006669)	ENSOMYG00000005587	ENSOMYG00000021015	fut9 (ENSOMYG00000021009)	ENSOMYG00000020932	ENSOMYG00000020885	ENSOMYG00000020878
Oncorhynchus	ANCESTRAL SPECIES	98					ENSGT01090000260033.b.g.b.a.a.a.b.a.b.c.b.a	ENSGT01030000234589.h.f.b.b.a.a.a.b.b.a.c.b	ENSGT01090000260033.b.g.b.a.a.a.b.a.b.c.b.b	ENSGT01030000234589.h.f.b.b.a.a.a.b.b.a.c.a	ENSGT00940000165434.i	ENSGT00390000005508.a.b.d	ENSGT00940000164836.j.b	ENSGT00950000183017.b.b.a.a.c.a	ENSGT00390000013715.l #19	ENSGT01030000234980	ENSGT00940000156720.q #21	ENSGT00950000182973.a.c.b.l #22	ENSGT00940000158466.k.a.a.a #23	ENSGT00500000045001.e.a	ENSGT00390000015968.c	ENSGT00600000084428.b.o	ENSGT00940000154572.g.a.b	ENSGT00500000045001.e.b.a	ENSGT00390000015968.d.a	ENSGT00600000084428.b.p	ENSGT00940000154572.g.b	ENSGT01100000263473.a.b.g.a.a.b.a.b.a.a.b.b	ENSGT00940000157710.p.b	ENSGT00390000018647	ENSGT00940000157835.g.a	ENSGT00940000155095.i.b.b.c.a.b	ENSGT00940000155095.i.b.b.d.a
Oncorhynchus_a	ANCESTRAL SPECIES	83	ENSGT01030000234589.h.f.b.b.a.a.a.b.b.a.c.b	ENSGT01090000260033.b.g.b.a.a.a.b.a.b.c.b.b	ENSGT00940000165434.j	ENSGT00940000165434.i	ENSGT00390000005508.a.b.d	ENSGT00940000164836.j.b	ENSGT00950000183017.b.b.a.a.c.a	ENSGT00940000164836.i	ENSGT00950000183017.b.b.a.a.d	ENSGT00940000164836.j.a	ENSGT00950000183017.b.b.a.a.c.b	ENSGT00390000013715.l #19	ENSGT01030000234980	ENSGT00390000013715.k #19	ENSGT00940000156720.q #21	ENSGT00950000182973.a.c.b.l #22	ENSGT00940000158466.k.a.a.a #23	ENSGT00500000045001.e.a	ENSGT00390000015968.c	ENSGT00600000084428.b.o	ENSGT00940000154572.g.a.b	ENSGT00950000182973.a.c.b.k.b #22	ENSGT00940000158466.k.a.b #23	ENSGT00500000045001.f	ENSGT00940000158466.k.a.a.b #23	ENSGT00500000045001.e.b.a	ENSGT00390000015968.d.a	ENSGT00600000084428.b.p	ENSGT00940000154572.h	ENSGT01100000263473.a.b.g.a.a.b.a.b.a.a.b.a	ENSGT00940000157710.p.b
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	8	ENSOTSG00005037881	ENSOTSG00005037882	ENSOTSG00005037883	ENSOTSG00005037886	ENSOTSG00005037887	ENSOTSG00005037888	ENSOTSG00005037889	ENSOTSG00005037890	ENSOTSG00005037892	ENSOTSG00005037893	ENSOTSG00005037894	ENSOTSG00005037895	MCAT (ENSOTSG00005037896) #19	MCAT (ENSOTSG00005037897) #19	ttll1 (ENSOTSG00005037898) #21	pacsin2 (ENSOTSG00005037899) #22	arfgap3 (ENSOTSG00005037900) #23	ENSOTSG00005037901	ENSOTSG00005037902	uhrf1bp1l (ENSOTSG00005037905)	ENSOTSG00005037907	ENSOTSG00005037909	ENSOTSG00005037911	bag1 (ENSOTSG00005037912)	ENSOTSG00005037918	ENSOTSG00005037921	ctrb.3 (ENSOTSG00005037925)	osgep (ENSOTSG00005037928)	apex1 (ENSOTSG00005001706)	ENSOTSG00005001933	ENSOTSG00005002176
Chinook salmon	MODERN SPECIES	62	ENSOTSG00005012538	ENSOTSG00005012539	ENSOTSG00005012540	ENSOTSG00005012541	ENSOTSG00005012542	ENSOTSG00005012543	ENSOTSG00005012544	ENSOTSG00005012545	ENSOTSG00005012546	ENSOTSG00005012547	ENSOTSG00005012548	ENSOTSG00005012549	MCAT (ENSOTSG00005012550) #19	MCAT (ENSOTSG00005012551) #19	ttll1 (ENSOTSG00005012553) #21	pacsin2 (ENSOTSG00005012556) #22	arfgap3 (ENSOTSG00005012561) #23	ENSOTSG00005012563	ENSOTSG00005012565	uhrf1bp1l (ENSOTSG00005012568)	ENSOTSG00005012570	ENSOTSG00005012572	ENSOTSG00005012575	bag1 (ENSOTSG00005012576)	neurod6b (ENSOTSG00005012583)	XCR1 (ENSOTSG00005012584)	ENSOTSG00005012585	ENSOTSG00005012586	XCR1 (ENSOTSG00005012587)	neurod6b (ENSOTSG00005012588)
Northern pike	MODERN SPECIES	22	ENSELUG00000001969	pwp1 (ENSELUG00000001965)	ANO6 (ENSELUG00000001959)	ints13 (ENSELUG00000001948)	ENSELUG00000001557	ENSELUG00000001937	ENSELUG00000001935	ENSELUG00000001932	ENSELUG00000026420	selenoo2 (ENSELUG00000001528)	ENSELUG00000001929	ENSELUG00000029303	ENSELUG00000000053	mcat (ENSELUG00000001924) #19	ttll1 (ENSELUG00000001910) #21	pacsin2 (ENSELUG00000001905) #22	ENSELUG00000001887	ENSELUG00000001885	uhrf1bp1l (ENSELUG00000001881)	anks1b (ENSELUG00000001877)	apaf1 (ENSELUG00000001867)	ENSELUG00000001863	tcp11l2 (ENSELUG00000001862)	ENSELUG00000001860	scyl2 (ENSELUG00000001857)	si:ch211-244b2.3 (ENSELUG00000001856)	si:ch211-244b2.4 (ENSELUG00000001852)	si:dkeyp-38g8.5 (ENSELUG00000029910)	epyc (ENSELUG00000001849)	kera (ENSELUG00000001846)	lum (ENSELUG00000001843)
Otomorpha	ANCESTRAL SPECIES	531													ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968
Clupeiformes	ANCESTRAL SPECIES	87	ENSGT00940000157444	ENSGT00940000159941	ENSGT00390000011897	ENSGT00390000010053	ENSGT00950000182952.C.h	ENSGT00950000183004.a.b.a.a	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.b	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT00990000207548	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.b	ENSGT01050000244850.A.a.o.b
Atlantic herring	MODERN SPECIES	7	ENSCHAG00000018478	ENSCHAG00000018506	btbd11a (ENSCHAG00000018552)	cry1a (ENSCHAG00000019111)	ENSCHAG00000019339	tnnt2c (ENSCHAG00000019347)	si:dkey-222f8.3 (ENSCHAG00000019390)	slc26a3.1 (ENSCHAG00000019565)	slc26a4 (ENSCHAG00000020573)	ENSCHAG00000021131	ENSCHAG00000021139	ENSCHAG00000021147	mcat (ENSCHAG00000021150) #19	ENSCHAG00000021158	ttll1 (ENSCHAG00000021160) #21	pacsin2 (ENSCHAG00000000898) #22	arfgap3 (ENSCHAG00000001497) #23	ENSCHAG00000001748	uhrf1bp1l (ENSCHAG00000002645)	ENSCHAG00000005835	anks1b (ENSCHAG00000005896)	apaf1 (ENSCHAG00000006477)	ENSCHAG00000007246	tcp11l2 (ENSCHAG00000007262)	ENSCHAG00000007282	SNX4 (ENSCHAG00000007306)	gpd1c (ENSCHAG00000008081)	NCKAP5 (ENSCHAG00000008112)	LYPD1 (ENSCHAG00000008181)	ENSCHAG00000008214	actr3 (ENSCHAG00000008265)
Denticle herring	MODERN SPECIES	6	SPOP (ENSDCDG00000033704)	ENSDCDG00000033725	mkln1 (ENSDCDG00000033741)	NET1 (ENSDCDG00000033770)	SPOP (ENSDCDG00000033815)	asb13a.2 (ENSDCDG00000033817)	prkcq (ENSDCDG00000033846)	pfkfb3 (ENSDCDG00000034299)	rbm17 (ENSDCDG00000034792)	ENSDCDG00000034794	acot15 (ENSDCDG00000034799)	ENSDCDG00000034814	mcat (ENSDCDG00000019231) #19	ENSDCDG00000019237	ttll1 (ENSDCDG00000019243) #21	pacsin2 (ENSDCDG00000019263) #22	arfgap3 (ENSDCDG00000019300) #23	CEP83 (ENSDCDG00000020117)	ENSDCDG00000020130	ENSDCDG00000020136	wnt16 (ENSDCDG00000020142)	ENSDCDG00000020145	ing3 (ENSDCDG00000020148)	tspan12 (ENSDCDG00000020154)	kcnd2 (ENSDCDG00000020160)	FLNC (ENSDCDG00000020308)	ENSDCDG00000029840	sco2 (ENSDCDG00000029842)	ncaph2 (ENSDCDG00000029844)	socs2 (ENSDCDG00000029846)	cradd (ENSDCDG00000029847)
Otophysi	ANCESTRAL SPECIES	359															ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00940000158316	ENSGT00940000156717.f	ENSGT00550000074930	ENSGT00940000164590
Characiphysae	ANCESTRAL SPECIES	15	ENSGT00940000164299.b.a	ENSGT00940000160758	ENSGT00940000161105	ENSGT00440000035348	ENSGT00940000154615.j	ENSGT00390000004190	ENSGT00970000198356	ENSGT00940000158497.w	ENSGT00940000158497.x	ENSGT00940000162902	ENSGT00940000177041	ENSGT00940000159918.a.a	ENSGT00940000165554	ENSGT01100000263520.a.b.b.b	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00940000158316	ENSGT00940000156717.f	ENSGT00550000074930	ENSGT00940000164590	ENSGT00940000158094	ENSGT00940000154318.A.a	ENSGT00940000157502	ENSGT00940000158420	ENSGT00940000159226	ENSGT00390000007725.A.a	ENSGT00940000178699	ENSGT00940000155840.B
Channel catfish	MODERN SPECIES	10	nup50 (ENSIPUG00000011655)	kiaa0930 (ENSIPUG00000011717)	Mfap4 (ENSIPUG00000011760)	ENSIPUG00000011827	large1 (ENSIPUG00000011862)	large1 (ENSIPUG00000011925)	ENSIPUG00000012003	ASCL4 (ENSIPUG00000012015)	ENSIPUG00000012034	ENSIPUG00000012084	slc37a3 (ENSIPUG00000012054)	ZN12 (ENSIPUG00000012109)	ENSIPUG00000012137	ENSIPUG00000012172	ttll1 (ENSIPUG00000012217) #21	Pacsin2 (ENSIPUG00000012263) #22	arfgap3 (ENSIPUG00000012395) #23	ikbip (ENSIPUG00000012469)	ckap4 (ENSIPUG00000012478)	terf2 (ENSIPUG00000012491)	RAB19 (ENSIPUG00000012509)	Cct2 (ENSIPUG00000012527)	nots (ENSIPUG00000012575)	dgki (ENSIPUG00000012604)	ENSIPUG00000012799	rassf3 (ENSIPUG00000012813)	GNS (ENSIPUG00000012877)	tbc1d30 (ENSIPUG00000013150)	ntf3 (ENSIPUG00000013282)	ENSIPUG00000013287	ano2b (ENSIPUG00000013298)
Characiphysae_b	ANCESTRAL SPECIES	58	ENSGT00940000164299.b.a	ENSGT00940000160758	ENSGT00940000161105	ENSGT00440000035348	ENSGT00940000154615.j	ENSGT00390000004190	ENSGT00970000198356	ENSGT00940000158497.w	ENSGT00940000158497.x	ENSGT00940000162902	ENSGT00940000177041	ENSGT00940000159918.a.a	ENSGT00940000172894	ENSGT01100000263520.a.b.b.b	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00940000158316	ENSGT00940000156717.f	ENSGT00550000074930	ENSGT00940000164590	ENSGT00940000158094	ENSGT00940000154318.A.a	ENSGT00940000157502	ENSGT00440000039984.b	ENSGT00940000158420	ENSGT00940000159226	ENSGT00390000007725.A.a	ENSGT00940000178699
Characoidei	ANCESTRAL SPECIES	52	ENSGT00940000161860	ENSGT00940000160758	ENSGT00940000156124.d	ENSGT00440000035348	ENSGT00940000154615.j	ENSGT00390000004190	ENSGT00390000017181	ENSGT00940000158497.w	ENSGT00940000158497.x	ENSGT00940000162902	ENSGT00940000177041	ENSGT00940000159918.a.a	ENSGT00940000172894	ENSGT01100000263520.a.b.b.b	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00390000015968	ENSGT00940000158316	ENSGT00940000156717.f	ENSGT00550000074930	ENSGT00940000164590	ENSGT00940000158094	ENSGT00940000154318.A.a	ENSGT00940000157502	ENSGT00440000039984.b	ENSGT00940000158420	ENSGT00940000159226	ENSGT00390000007725.A.a	ENSGT00940000178699
Red-bellied piranha	MODERN SPECIES	30	ARHGAP8 (ENSPNAG00000000374)	ENSPNAG00000000362	nup50 (ENSPNAG00000007627)	kiaa0930 (ENSPNAG00000007624)	MFAP4 (ENSPNAG00000000349)	ENSPNAG00000007617	large1 (ENSPNAG00000007612)	large1 (ENSPNAG00000000337)	ENSPNAG00000007600	ENSPNAG00000000330	ENSPNAG00000000327	ENSPNAG00000030059	ENSPNAG00000030053	ENSPNAG00000030050	ttll1 (ENSPNAG00000030047) #21	pacsin2 (ENSPNAG00000030040) #22	arfgap3 (ENSPNAG00000030030) #23	ENSPNAG00000030027	ENSPNAG00000030025	terfa (ENSPNAG00000030019)	RAB19 (ENSPNAG00000030008)	cct2 (ENSPNAG00000030004)	nots (ENSPNAG00000029956)	ENSPNAG00000029881	RASSF3 (ENSPNAG00000029822)	gnsa (ENSPNAG00000029802)	TBC1D30 (ENSPNAG00000005653)	ntf3 (ENSPNAG00000029730)	ENSPNAG00000029728	ano2b (ENSPNAG00000029696)	cd9b (ENSPNAG00000029669)
Mexicana tetra	MODERN SPECIES	22	ARHGAP8 (ENSAMXG00000032472)	ENSAMXG00000008304	nup50 (ENSAMXG00000008276)	MFAP4 (ENSAMXG00000034926)	kiaa0930 (ENSAMXG00000017353)	ENSAMXG00000036271	large1 (ENSAMXG00000017299)	large1 (ENSAMXG00000039203)	ASCL4 (ENSAMXG00000040714)	ENSAMXG00000032270	ENSAMXG00000038980	ENSAMXG00000017219	ENSAMXG00000017199	ENSAMXG00000017184	ttll1 (ENSAMXG00000017172) #21	pacsin2 (ENSAMXG00000017165) #22	arfgap3 (ENSAMXG00000017159) #23	ENSAMXG00000032546	ENSAMXG00000017149	terfa (ENSAMXG00000032206)	RAB19 (ENSAMXG00000039737)	CCT2 (ENSAMXG00000044076)	nots (ENSAMXG00000017109)	gas8 (ENSAMXG00000036331)	gas8 (ENSAMXG00000038170)	ENSAMXG00000017084	ENSAMXG00000037456	ENSAMXG00000032487	zgc:194209 (ENSAMXG00000037062)	ENSAMXG00000034623	ntf3 (ENSAMXG00000030669)
Electric eel	MODERN SPECIES	73	ARHGAP8 (ENSEEEG00000020912)	ENSEEEG00000020910	nup50 (ENSEEEG00000020906)	MFAP4 (ENSEEEG00000020900)	kiaa0930 (ENSEEEG00000020890)	ENSEEEG00000020883	large1 (ENSEEEG00000020868)	large1 (ENSEEEG00000020852)	ASCL4 (ENSEEEG00000020850)	ENSEEEG00000020848	ENSEEEG00000020845	ENSEEEG00000020839	ENSEEEG00000020828	ENSEEEG00000020819	ttll1 (ENSEEEG00000020808) #21	pacsin2 (ENSEEEG00000020745) #22	arfgap3 (ENSEEEG00000020736) #23	ENSEEEG00000020733	ENSEEEG00000020730	terfa (ENSEEEG00000020728)	RAB19 (ENSEEEG00000020696)	cct2 (ENSEEEG00000020259)	nots (ENSEEEG00000020102)	ENSEEEG00000020099	ENSEEEG00000020098	slc16a4 (ENSEEEG00000020097)	RBM15 (ENSEEEG00000020096)	ALX3 (ENSEEEG00000020095)	slc6a17 (ENSEEEG00000020094)	ENSEEEG00000020093
Cyprinoidei	DUPLICATION
Cyprinoidei	ANCESTRAL SPECIES	217															ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b.m #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00940000180080	ENSGT00940000158316	ENSGT00940000156717.f	ENSGT00550000074930.c.a	ENSGT00940000164590
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	757															ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b.m.a #22	ENSGT00940000158466 #23	ENSGT01050000246950	ENSGT00500000045001	ENSGT00940000180080	ENSGT00940000158316	ENSGT00940000156717.f	ENSGT00550000074930.c.a.b	ENSGT00940000164590
Cyprininae_a	ANCESTRAL SPECIES	704													ENSGT01090000260030.a.b.a.b.b.a.b.a.a.a.a.b.a.b.b.b.b.a.a.a	ENSGT01030000235370	ENSGT00940000156720 #21	ENSGT00950000182973.a.c.b.m.a #22	ENSGT00940000158466 #23	ENSGT00550000074930.c.a.a
Common carp reference	MODERN SPECIES	8	ENSCCRG00000060709	ENSCCRG00000081870	ENSCCRG00000076645	ENSCCRG00000027361	ENSCCRG00000072332	ENSCCRG00000081799	ENSCCRG00000027735	ENSCCRG00000062496	ENSCCRG00000067979	ENSCCRG00000066639	ENSCCRG00000060565	ENSCCRG00000030116	ENSCCRG00000081369	ENSCCRG00000074610	ttll1 (ENSCCRG00000030122) #21	pacsin2 (ENSCCRG00000030141) #22	arfgap3 (ENSCCRG00000030423) #23	ENSCCRG00000030434	ENSCCRG00000078022	ckap4 (ENSCCRG00000030440)	ENSCCRG00000065162	terfa (ENSCCRG00000030447)	ENSCCRG00000035961	ENSCCRG00000040530	ENSCCRG00000030495	ENSCCRG00000072893	ENSCCRG00000006240	ENSCCRG00000042992	ENSCCRG00000078084	ENSCCRG00000059420	ENSCCRG00000058712
Golden-line barbel	MODERN SPECIES	1309									ENSSGRG00000013809	ENSSGRG00000013812	ENSSGRG00000013813	ENSSGRG00000013815	ENSSGRG00000013817	ENSSGRG00000013819	ttll1 (ENSSGRG00000013820) #21	pacsin2 (ENSSGRG00000013825) #22	ENSSGRG00000013909	ENSSGRG00000013910	ckap4 (ENSSGRG00000013913)	ENSSGRG00000013916	RAB19 (ENSSGRG00000013921)	ENSSGRG00000013922	cct2 (ENSSGRG00000013923)	nots (ENSSGRG00000013940)	nots (ENSSGRG00000013942)
Goldfish	MODERN SPECIES	33	KDM5A (ENSCARG00000002276)	ENSCARG00000003463	ENSCARG00000003474	ENSCARG00000003483	ENSCARG00000003491	ENSCARG00000003498	ENSCARG00000020890	ENSCARG00000020894	ENSCARG00000020897	ENSCARG00000020901	ENSCARG00000020904	ENSCARG00000020911	ENSCARG00000020918	ENSCARG00000020933	ttll1 (ENSCARG00000020939) #21	pacsin2 (ENSCARG00000020975) #22	ENSCARG00000021093	ENSCARG00000021106	ckap4 (ENSCARG00000021122)	terfa (ENSCARG00000021135)	ENSCARG00000021176	cct2 (ENSCARG00000021185)	nots (ENSCARG00000021225)	ENSCARG00000021278	ENSCARG00000021283	ENSCARG00000021290	ENSCARG00000021296	ENSCARG00000021311	ENSCARG00000021317	ENSCARG00000021327	ENSCARG00000021335
Cyprininae	ANCESTRAL SPECIES																	ENSGT00950000182973.a.c.b.m.b #22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00950000182973.a.c.b.m.b #22
Common carp reference	MODERN SPECIES	36	ENSCCRG00000060656	ENSCCRG00000080770	ENSCCRG00000067767	ENSCCRG00000061197	ENSCCRG00000068264	ENSCCRG00000075483	ENSCCRG00000035056	ENSCCRG00000073995	ENSCCRG00000057322	ENSCCRG00000055956	ENSCCRG00000060494	ENSCCRG00000064782	ENSCCRG00000056429	ENSCCRG00000059452	ENSCCRG00000016870	pacsin2 (ENSCCRG00000040570) #22	ENSCCRG00000040543 #23	ENSCCRG00000030467	ENSCCRG00000073864	ENSCCRG00000057652	ENSCCRG00000082584	ENSCCRG00000054778	ENSCCRG00000078616	ENSCCRG00000059356	ENSCCRG00000061697	ENSCCRG00000060321	ENSCCRG00000065613	ENSCCRG00000076262	ENSCCRG00000054849	ENSCCRG00000069196	ENSCCRG00000044765
Goldfish	MODERN SPECIES	21	hmga2 (ENSCARG00000022193)	b2m (ENSCARG00000022179)	IRAK3 (ENSCARG00000022143)	dera (ENSCARG00000022128)	lmo3 (ENSCARG00000022106)	ENSCARG00000022097	ENSCARG00000022091	ENSCARG00000022083	ENSCARG00000022078	ENSCARG00000022060	ENSCARG00000022058	ENSCARG00000022046	ENSCARG00000022039	USP15 (ENSCARG00000021833)	ENSCARG00000021817	pacsin2 (ENSCARG00000021803) #22	ENSCARG00000021786	ENSCARG00000021639	cct2 (ENSCARG00000021363)	ENSCARG00000021360	ENSCARG00000021349	ENSCARG00000021344	FLNC (ENSCARG00000016576)	ENSCARG00000016350	ENSCARG00000016338	adm2a (ENSCARG00000014677)	fbxo18 (ENSCARG00000014629)	ENSCARG00000014615	ENSCARG00000014353	ENSCARG00000014328	ENSCARG00000014324
Zebrafish	MODERN SPECIES	19	ENSDARG00000113671	fasn2 (ENSDARG00000096762)	PTCHD3 (ENSDARG00000068874)	ENSDARG00000092759	hspa12a.3 (ENSDARG00000068869)	si:dkey-61p9.7 (ENSDARG00000068865)	ENSDARG00000096726	gbp4 (ENSDARG00000068857)	ENSDARG00000025046	ENSDARG00000099384	ENSDARG00000100669	ENSDARG00000104380	ENSDARG00000101992	ENSDARG00000100654	ttll1 (ENSDARG00000090778) #21	pacsin2 (ENSDARG00000078014) #22	arfgap3 (ENSDARG00000097583) #23	ikbip (ENSDARG00000078520)	terfa (ENSDARG00000039302)	ckap4 (ENSDARG00000032405)	ENSDARG00000087206	nots (ENSDARG00000099824)	cct2 (ENSDARG00000104674)	ENSDARG00000101049
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00950000182973.a.c.b.n #22
Cyprininae	ANCESTRAL SPECIES																	ENSGT00950000182973.a.c.b.n #22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00950000182973.a.c.b.n #22
Golden-line barbel	MODERN SPECIES	3294																ENSSGRG00000006338 #22
Osteoglossiformes	ANCESTRAL SPECIES	224														ENSGT00950000183017.b.b.a.a	ENSGT00390000013715 #19	ENSGT00950000182973.a.c.b #22	ENSGT00940000158466 #23	ENSGT00500000045001	ENSGT00600000084428.b	ENSGT00940000154572.c	ENSGT00940000157710	ENSGT00390000018647	ENSGT00940000157835	ENSGT00720000108833	ENSGT00950000182976.a.a	ENSGT00880000138031	ENSGT00940000164581.A.a.a	ENSGT00940000166611	ENSGT00950000182885.B	ENSGT00950000182885.C.b	ENSGT00390000010777
P. kingsleyae	MODERN SPECIES	510				ENSPKIG00000007206	zc3hc1 (ENSPKIG00000007172)	klhdc10 (ENSPKIG00000007124)	cax1 (ENSPKIG00000006986)	TSPAN33 (ENSPKIG00000006886)	SLC26A5 (ENSPKIG00000006819)	psmc2 (ENSPKIG00000006760)	dnajc2 (ENSPKIG00000006694)	pmpcb (ENSPKIG00000006647)	zcrb1 (ENSPKIG00000006587)	ENSPKIG00000006556	mcat (ENSPKIG00000006538) #19	pacsin2 (ENSPKIG00000006423) #22	ENSPKIG00000006344 #23	ENSPKIG00000006312
Asian bonytongue	MODERN SPECIES	11	epyc (ENSSFOG00015023949)	kera (ENSSFOG00015023956)	lum (ENSSFOG00015023962)	dcn (ENSSFOG00015023966)	ENSSFOG00015000127	btg1 (ENSSFOG00015032577)	ENSSFOG00015027481	fam3c (ENSSFOG00015000202)	ENSSFOG00015000257	cbll1 (ENSSFOG00015000266)	slc26a3.1 (ENSSFOG00015000298)	slc26a4 (ENSSFOG00015000396)	ENSSFOG00015000409	ENSSFOG00015026922	mcat (ENSSFOG00015000457) #19	pacsin2 (ENSSFOG00015000469) #22	arfgap3 (ENSSFOG00015000529) #23	IKBIP (ENSSFOG00015000593)	uhrf1bp1l (ENSSFOG00015000671)	anks1b (ENSSFOG00015000686)	apaf1 (ENSSFOG00015000841)	ENSSFOG00015000863	tcp11l2 (ENSSFOG00015000867)	actr6 (ENSSFOG00015000878)	ENSSFOG00015000921	scyl2 (ENSSFOG00015000976)	si:ch211-244b2.4 (ENSSFOG00015001068)	ascl1a (ENSSFOG00015027323)	pah (ENSSFOG00015001109)	th2 (ENSSFOG00015001175)	nup37 (ENSSFOG00015001235)
Spotted gar	MODERN SPECIES	674	enkur (ENSLOCG00000015086)	ttll12 (ENSLOCG00000015088) #17	amn1 (ENSLOCG00000015091)	etfbkmt (ENSLOCG00000015095)	dennd5b (ENSLOCG00000015096)	caprin2 (ENSLOCG00000015099)	ipo8 (ENSLOCG00000015102)	TMTC1 (ENSLOCG00000015106)	ovch1 (ENSLOCG00000015110)	ENSLOCG00000015113	ergic2 (ENSLOCG00000015116)	si:dkey-97m3.1 (ENSLOCG00000015119)	ENSLOCG00000015122	mcat (ENSLOCG00000015128) #19	ttll1 (ENSLOCG00000015129) #21	pacsin2 (ENSLOCG00000015131) #22	arfgap3 (ENSLOCG00000015134) #23	IKBIP (ENSLOCG00000015136)	ENSLOCG00000017892	CKAP4 (ENSLOCG00000015137)	uhrf1bp1l (ENSLOCG00000015138)	anks1b (ENSLOCG00000015145)	apaf1 (ENSLOCG00000015153)	ENSLOCG00000015160	tcp11l2 (ENSLOCG00000015162)	actr6 (ENSLOCG00000015163)	DEPDC4 (ENSLOCG00000015166)	scyl2 (ENSLOCG00000015168)	si:ch211-244b2.4 (ENSLOCG00000015170)	pah (ENSLOCG00000015172)	washc3 (ENSLOCG00000015173)
Reedfish	MODERN SPECIES		ENSECRG00000009918	myf6 (ENSECRG00000009908)	PTPRQ (ENSECRG00000009623)	ENSECRG00000009546	OTOGL (ENSECRG00000009486)	rps16 (ENSECRG00000009451)	ENSECRG00000009442	ENSECRG00000009427	ENSECRG00000009415	pawr (ENSECRG00000009402)	syt1a (ENSECRG00000009372)	nav3 (ENSECRG00000009243)	ENSECRG00000009184	mcat (ENSECRG00000009176) #19	ttll1 (ENSECRG00000009159) #21	pacsin2 (ENSECRG00000009143) #22	arfgap3 (ENSECRG00000009110) #23	IKBIP (ENSECRG00000009093)	ENSECRG00000009080	uhrf1bp1l (ENSECRG00000009040)	anks1b (ENSECRG00000006208)	ENSECRG00000005984	apaf1 (ENSECRG00000005928)	tcp11l2 (ENSECRG00000005889)	actr6 (ENSECRG00000005878)	DEPDC4 (ENSECRG00000005867)	scyl2 (ENSECRG00000005840)	ENSECRG00000005812	ENSECRG00000005794	ASCL1 (ENSECRG00000005766)	pah (ENSECRG00000005757)
Elephant shark	MODERN SPECIES	1548	waslb (ENSCMIG00000019857)	hyal6 (ENSCMIG00000019853)	ENSCMIG00000019852	TMEM229A (ENSCMIG00000019850)	gpr37b (ENSCMIG00000019849)	ENSCMIG00000019848	B4GALNT3 (ENSCMIG00000019846)	ENSCMIG00000019844	ENSCMIG00000019842	ENSCMIG00000019841	tspo (ENSCMIG00000019839) ##18	mcat (ENSCMIG00000019838) #19	ENSCMIG00000019837	ttll1 (ENSCMIG00000019835) #21	snrpb2 (ENSCMIG00000019833)	pacsin2 (ENSCMIG00000019830) #22	ENSCMIG00000019828	ARFGAP3 (ENSCMIG00000019824) #23	FAM180A (ENSCMIG00000019821)	slc13a4 (ENSCMIG00000019819)	stmp1 (ENSCMIG00000019818)	dennd11 (ENSCMIG00000019815)	ENSCMIG00000019813	ENSCMIG00000019812	IQSEC3 (ENSCMIG00000019811)	ENSCMIG00000019809	ENSCMIG00000019808	wash1 (ENSCMIG00000019806)	rtcb (ENSCMIG00000019804)	FBXO7 (ENSCMIG00000019802)	TIMP3 (ENSCMIG00000019801)
Gnathostomata	ANCESTRAL SPECIES	111											ENSGT00390000012980.b ##18	ENSGT00390000013715 #19	ENSGT01090000260100.A	ENSGT00940000156720 #21	ENSGT00440000034918	ENSGT00950000182973.a.c.a ##22	ENSGT00950000182973.a.c.b #22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b
Euteleostomi	ANCESTRAL SPECIES	120					ENSGT00940000167467	ENSGT00940000159669	ENSGT00440000033504.C	ENSGT00940000159918.a.b	ENSGT00940000165794	ENSGT00940000158726	ENSGT00940000158771	ENSGT00950000182956.b.b.b	ENSGT00390000009166	ENSGT00940000155580.a.a	ENSGT00440000034918	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767	ENSGT00940000159117
Sarcopterygii	ANCESTRAL SPECIES	137											ENSGT01030000234648.a.b.a.a.a	ENSGT00410000025882.b	ENSGT00940000157392	ENSGT00940000154089.a	ENSGT00440000034918	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767	ENSGT00940000159117
Tetrapoda	ANCESTRAL SPECIES	98												ENSGT01030000234648.a.b.a.a.a	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767	ENSGT00940000159117
Amniota	ANCESTRAL SPECIES	26	ENSGT00390000006988	ENSGT00940000156616	ENSGT00390000012980.b ##18	ENSGT00950000182815.b	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767	ENSGT00940000159117
Mammalia	ANCESTRAL SPECIES	41	ENSGT00390000006988	ENSGT00940000156616	ENSGT00390000012980.b ##18	ENSGT00950000182815.b	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767	ENSGT00940000159117
Theria	ANCESTRAL SPECIES	4	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a	ENSGT00390000008767.b
Marsupialia	ANCESTRAL SPECIES	2	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228.d.a.b	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.b	ENSGT00950000182956.b.b.b
Marsupialia_b	ANCESTRAL SPECIES	1	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228.d.a.b	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.b	ENSGT00950000182956.b.b.b
Diprotodontia	ANCESTRAL SPECIES	44	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228.c	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.b	ENSGT00950000182956.b.b.b
Diprotodontia_a	ANCESTRAL SPECIES	49	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228.c	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.b	ENSGT00950000182956.b.b.b
koala	MODERN SPECIES	76	CUTA (ENSPCIG00000030134)	SYNGAP1 (ENSPCIG00000030140)	ZBTB9 (ENSPCIG00000030149)	BAK1 (ENSPCIG00000035728)	ENSPCIG00000014453	ITPR3 (ENSPCIG00000016569)	ENSPCIG00000035005	IP6K3 (ENSPCIG00000024478)	LEMD2 (ENSPCIG00000012513)	MLN (ENSPCIG00000012512)	GRM4 (ENSPCIG00000036938)	HMGA1 (ENSPCIG00000024362)	ENSPCIG00000024361	NUDT3 (ENSPCIG00000034631)	ENSPCIG00000026597	PACSIN1 (ENSPCIG00000006379) ##22	SPDEF (ENSPCIG00000006374)	ILRUN (ENSPCIG00000006371)	SNRPC (ENSPCIG00000033609)	BLTP3A (ENSPCIG00000006367)	ENSPCIG00000006365	ANKS1A (ENSPCIG00000006345)	ENSPCIG00000006331	ENSPCIG00000012637	SCUBE3 (ENSPCIG00000003800) ##16	ZNF76 (ENSPCIG00000021233)	DEF6 (ENSPCIG00000021237)	PPARD (ENSPCIG00000021240)	ENSPCIG00000021244	ENSPCIG00000021248	ENSPCIG00000021251
Common wonbat	MODERN SPECIES	1047	ENSVURG00010015167	PHF1 (ENSVURG00010015194)	CUTA (ENSVURG00010015262)	SYNGAP1 (ENSVURG00010015312)	BAK1 (ENSVURG00010016019)	ENSVURG00010016031	ITPR3 (ENSVURG00010016061)	ENSVURG00010016152	IP6K3 (ENSVURG00010016173)	ENSVURG00010016182	MLN (ENSVURG00010016193)	GRM4 (ENSVURG00010016218)	SMIM29 (ENSVURG00010016385)	NUDT3 (ENSVURG00010016394)	ENSVURG00010016405	PACSIN1 (ENSVURG00010016428) ##22	SPDEF (ENSVURG00010016586)	ILRUN (ENSVURG00010016604)	SNRPC (ENSVURG00010016613)	BLTP3A (ENSVURG00010016640)	ANKS1A (ENSVURG00010016789)	ENSVURG00010018877	ENSVURG00010018884 ##16	ENSVURG00010018893 ##16	ZNF76 (ENSVURG00010018901)	DEF6 (ENSVURG00010018912)	PPARD (ENSVURG00010018918)	ENSVURG00010018922	ENSVURG00010018929	RPL10A (ENSVURG00010018942)	TEAD3 (ENSVURG00010018988)
Wallaby	MODERN SPECIES	11196																PACSIN1 (ENSMEUG00000008638) ##22
Tasmanian devil	MODERN SPECIES	3	CUTA (ENSSHAG00000002227)	SYNGAP1 (ENSSHAG00000002507)	ZBTB9 (ENSSHAG00000027893)	BAK1 (ENSSHAG00000028586)	ENSSHAG00000005349	ITPR3 (ENSSHAG00000006269)	UQCC2 (ENSSHAG00000007481)	IP6K3 (ENSSHAG00000007830)	ENSSHAG00000028642	MLN (ENSSHAG00000031254)	GRM4 (ENSSHAG00000026932)	ENSSHAG00000026467	SMIM29 (ENSSHAG00000021864)	NUDT3 (ENSSHAG00000023017)	RPS10 (ENSSHAG00000000731)	PACSIN1 (ENSSHAG00000029937) ##22	SPDEF (ENSSHAG00000004899)	ILRUN (ENSSHAG00000031640)	ENSSHAG00000000945	BLTP3A (ENSSHAG00000003291)	ENSSHAG00000004697	ANKS1A (ENSSHAG00000006146)	ENSSHAG00000007929	SCUBE3 (ENSSHAG00000009564) ##16	ENSSHAG00000010104	PPARD (ENSSHAG00000027880)	ENSSHAG00000011018	RPL10A (ENSSHAG00000030402)	TEAD3 (ENSSHAG00000011218)	TULP1 (ENSSHAG00000011434)	FKBP5 (ENSSHAG00000011819)
Eutheria	ANCESTRAL SPECIES	9	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00390000008767.b
Atlantogenata	ANCESTRAL SPECIES	3	ENSGT00950000183180.a.b	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT01050000247851	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.k.a	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.a	ENSGT00950000182956.b.b.b
Xenarthra	ANCESTRAL SPECIES																	ENSGT00950000182973.a.c.a ##22
Sloth	MODERN SPECIES	2086																ENSCHOG00000009493 ##22
Afrotheria	ANCESTRAL SPECIES	83	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00520000057851	ENSGT00520000061205	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT01050000247851	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.k.a	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.a	ENSGT00950000182956.b.b.b	ENSGT00940000158771
Tenrec	MODERN SPECIES	2313																ENSETEG00000005882 ##22	SPDEF (ENSETEG00000005883)	ILRUN (ENSETEG00000005884)
Afrotheria_a	ANCESTRAL SPECIES	84	ENSGT00950000183180.a.b	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT01050000247851	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.k.a	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.a	ENSGT00950000182956.b.b.b	ENSGT00940000158771
Elephant	MODERN SPECIES	14	PHF1 (ENSLAFG00000005870)	CUTA (ENSLAFG00000005876)	SYNGAP1 (ENSLAFG00000007848)	ZBTB9 (ENSLAFG00000020986)	BAK1 (ENSLAFG00000001446)	ENSLAFG00000001449	ITPR3 (ENSLAFG00000022216)	UQCC2 (ENSLAFG00000008206)	IP6K3 (ENSLAFG00000012157)	LEMD2 (ENSLAFG00000012159)	MLN (ENSLAFG00000012163)	GRM4 (ENSLAFG00000026679)	HMGA1 (ENSLAFG00000028445)	NUDT3 (ENSLAFG00000008940)	RPS10 (ENSLAFG00000008539)	PACSIN1 (ENSLAFG00000006319) ##22	SPDEF (ENSLAFG00000002253)	ILRUN (ENSLAFG00000015230)	SNRPC (ENSLAFG00000013534)	BLTP3A (ENSLAFG00000032745)	TAF11 (ENSLAFG00000011482)	ANKS1A (ENSLAFG00000011487)	TCP11 (ENSLAFG00000011497)	SCUBE3 (ENSLAFG00000007965) ##16	ZNF76 (ENSLAFG00000026071)	DEF6 (ENSLAFG00000007975)	PPARD (ENSLAFG00000017670)	ENSLAFG00000016443	TEAD3 (ENSLAFG00000014818)	TULP1 (ENSLAFG00000014823)	ENSLAFG00000001315
Hyrax	MODERN SPECIES	1874																PACSIN1 (ENSPCAG00000000528) ##22	SPDEF (ENSPCAG00000000551)
Boreoeutheria	ANCESTRAL SPECIES	7	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00730000110997.k.a	ENSGT00900000143577	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705
Laurasiatheria	ANCESTRAL SPECIES	7	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00900000143577	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00950000182973.a.c.a ##22
Common shrew	MODERN SPECIES	1760																ENSSARG00000009202 ##22
Hedgehog	MODERN SPECIES	2403																ENSEEUG00000012037 ##22
Laurasiatheria_a	ANCESTRAL SPECIES	7	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00900000143577	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b
Laurasiatheria_b	ANCESTRAL SPECIES	7	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b
Carnivora	ANCESTRAL SPECIES	4	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b
Caniformia	ANCESTRAL SPECIES	3	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b
Caniformia_b	ANCESTRAL SPECIES	6	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b
Ursidae	ANCESTRAL SPECIES	37	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b
Ursus	ANCESTRAL SPECIES	53	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00390000011871	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.k.a	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b
American black bear	MODERN SPECIES	2285															ENSUAMG00000019950	PACSIN1 (ENSUAMG00000019949) ##22	SPDEF (ENSUAMG00000019946)
Polar bear	MODERN SPECIES	184	CUTA (ENSUMAG00000012326)	SYNGAP1 (ENSUMAG00000012214)	ZBTB9 (ENSUMAG00000012186)	ENSUMAG00000012169	ENSUMAG00000012167	ITPR3 (ENSUMAG00000011124)	UQCC2 (ENSUMAG00000010960)	IP6K3 (ENSUMAG00000010952)	LEMD2 (ENSUMAG00000010937)	MLN (ENSUMAG00000010935)	GRM4 (ENSUMAG00000010915)	HMGA1 (ENSUMAG00000010910)	ENSUMAG00000010909	NUDT3 (ENSUMAG00000010905)	RPS10 (ENSUMAG00000010901)	PACSIN1 (ENSUMAG00000010881) ##22	ILRUN (ENSUMAG00000010872)	SNRPC (ENSUMAG00000010869)	BLTP3A (ENSUMAG00000010824)	TAF11 (ENSUMAG00000010818)	ANKS1A (ENSUMAG00000010559)	TCP11 (ENSUMAG00000010533)	SCUBE3 (ENSUMAG00000010513) ##16	ZNF76 (ENSUMAG00000010449)	DEF6 (ENSUMAG00000010421)	PPARD (ENSUMAG00000010402)	ENSUMAG00000010392	FANCE (ENSUMAG00000010380)	RPL10A (ENSUMAG00000010363)	TEAD3 (ENSUMAG00000010306)	TULP1 (ENSUMAG00000010287)
Giant Panda	MODERN SPECIES	15	PHF1 (ENSAMEG00000001427)	CUTA (ENSAMEG00000001407)	SYNGAP1 (ENSAMEG00000001379)	ZBTB9 (ENSAMEG00000019731)	ENSAMEG00000001363	ENSAMEG00000001355	ITPR3 (ENSAMEG00000001124)	UQCC2 (ENSAMEG00000029955)	IP6K3 (ENSAMEG00000001109)	ENSAMEG00000001099	GRM4 (ENSAMEG00000001063)	HMGA1 (ENSAMEG00000001061)	SMIM29 (ENSAMEG00000001058)	NUDT3 (ENSAMEG00000001052)	ENSAMEG00000001047	PACSIN1 (ENSAMEG00000000988) ##22	SPDEF (ENSAMEG00000000981)	ILRUN (ENSAMEG00000000971)	SNRPC (ENSAMEG00000000963)	BLTP3A (ENSAMEG00000000933)	TAF11 (ENSAMEG00000000920)	ANKS1A (ENSAMEG00000000884)	TCP11 (ENSAMEG00000000846)	SCUBE3 (ENSAMEG00000000790) ##16	ZNF76 (ENSAMEG00000000752)	DEF6 (ENSAMEG00000000719)	PPARD (ENSAMEG00000000689)	FANCE (ENSAMEG00000000684)	RPL10A (ENSAMEG00000000670)	ENSAMEG00000000624	FKBP5 (ENSAMEG00000000571)
Mustelinae	ANCESTRAL SPECIES	65	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078.`c	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b	ENSGT00940000158771
American mink	MODERN SPECIES	258	CUTA (ENSNVIG00000012780)	SYNGAP1 (ENSNVIG00000012712)	ZBTB9 (ENSNVIG00000012705)	BAK (ENSNVIG00000012694)	ENSNVIG00000012687	ITPR3 (ENSNVIG00000012548)	UQCC2 (ENSNVIG00000012538)	IP6K3 (ENSNVIG00000012514)	LEMD2 (ENSNVIG00000012480)	MLN (ENSNVIG00000012447)	GRM4 (ENSNVIG00000012391)	HMGA1 (ENSNVIG00000012367)	ENSNVIG00000012331	NUDT3 (ENSNVIG00000012317)	RPS10 (ENSNVIG00000012259)	PACSIN1 (ENSNVIG00000012200) ##22	SPDEF (ENSNVIG00000012148)	ILRUN (ENSNVIG00000012137)	SNRPC (ENSNVIG00000012123)	BLTP3A (ENSNVIG00000012042)	TAF11 (ENSNVIG00000012017)	ANKS1A (ENSNVIG00000011961)	TCP11 (ENSNVIG00000011822)	ENSNVIG00000011809	SCUBE3 (ENSNVIG00000011783) ##16	ZNF76 (ENSNVIG00000011700)	DEF6 (ENSNVIG00000011668)	ENSNVIG00000011650	PPARD (ENSNVIG00000011565)	FANCE (ENSNVIG00000011523)	RPL10A (ENSNVIG00000011502)
Ferret	MODERN SPECIES	318	ZBTB9 (ENSMPUG00000018789)	BAK1 (ENSMPUG00000002438)	ENSMPUG00000002455	ENSMPUG00000002458	ENSMPUG00000002462	UQCC2 (ENSMPUG00000003032)	IP6K3 (ENSMPUG00000003052)	ENSMPUG00000003058	LEMD2 (ENSMPUG00000003061)	MLN (ENSMPUG00000003080)	GRM4 (ENSMPUG00000003090)	ENSMPUG00000003098	SMIM29 (ENSMPUG00000003102)	NUDT3 (ENSMPUG00000003111)	ENSMPUG00000003117	PACSIN1 (ENSMPUG00000003139) ##22	SPDEF (ENSMPUG00000003167)	ILRUN (ENSMPUG00000003190)	SNRPC (ENSMPUG00000003210)	BLTP3A (ENSMPUG00000003236)	TAF11 (ENSMPUG00000003241)	ENSMPUG00000003243	ANKS1A (ENSMPUG00000003245)	TCP11 (ENSMPUG00000003416)	SCUBE3 (ENSMPUG00000003499) ##16	ZNF76 (ENSMPUG00000003522)	DEF6 (ENSMPUG00000003534)	PPARD (ENSMPUG00000003549)	FANCE (ENSMPUG00000003560)	RPL10A (ENSMPUG00000003568)	TEAD3 (ENSMPUG00000003624)
Canidae	ANCESTRAL SPECIES	6	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.q.b.b	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b	ENSGT00940000158771
Canis_lupus	ANCESTRAL SPECIES	11	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT00940000153117.B.c.a.d.a	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.q.b.b	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.k.a	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b	ENSGT00940000158771
Dingo	MODERN SPECIES	276	ZBTB9 (ENSCAFG00020003798)	BAK1 (ENSCAFG00020003807)	ENSCAFG00020003809	ENSCAFG00020003859	ENSCAFG00020005090	UQCC2 (ENSCAFG00020006083)	IP6K3 (ENSCAFG00020006095)	LEMD2 (ENSCAFG00020006098)	MLN (ENSCAFG00020006103)	ENSCAFG00020006128	GRM4 (ENSCAFG00020006156)	HMGA1 (ENSCAFG00020006214)	SMIM29 (ENSCAFG00020006217)	NUDT3 (ENSCAFG00020006231)	RPS10 (ENSCAFG00020006238)	PACSIN1 (ENSCAFG00020006279) ##22	SPDEF (ENSCAFG00020006289)	ILRUN (ENSCAFG00020006292)	ENSCAFG00020006308	BLTP3A (ENSCAFG00020006319)	ENSCAFG00020006489	TAF11 (ENSCAFG00020006493)	ANKS1A (ENSCAFG00020006542)	TCP11 (ENSCAFG00020006981)	SCUBE3 (ENSCAFG00020006984) ##16	ZNF76 (ENSCAFG00020006995)	DEF6 (ENSCAFG00020007011)	PPARD (ENSCAFG00020007019)	FANCE (ENSCAFG00020007027)	ENSCAFG00020007031	TEAD3 (ENSCAFG00020007039)
Dog	MODERN SPECIES	3	ZBTB9 (ENSCAFG00845023405)	ENSCAFG00845023466	BAK1 (ENSCAFG00845023547)	ENSCAFG00845023632	ITPR3 (ENSCAFG00845023922)	UQCC2 (ENSCAFG00845025862)	IP6K3 (ENSCAFG00845025943)	LEMD2 (ENSCAFG00845025993)	MLN (ENSCAFG00845026089)	ENSCAFG00845026155	GRM4 (ENSCAFG00845026257)	HMGA1 (ENSCAFG00845026595)	ENSCAFG00845026693	NUDT3 (ENSCAFG00845026783)	RPS10 (ENSCAFG00845026833)	PACSIN1 (ENSCAFG00845026967) ##22	SPDEF (ENSCAFG00845027202)	ILRUN (ENSCAFG00845027291)	ENSCAFG00845027377	SNRPC (ENSCAFG00845027420)	BLTP3A (ENSCAFG00845027489)	FKBP1A (ENSCAFG00845027743)	TAF11 (ENSCAFG00845027786)	ANKS1A (ENSCAFG00845027911)	TCP11 (ENSCAFG00845028305)	SCUBE3 (ENSCAFG00845028551) ##16	ZNF76 (ENSCAFG00845028752)	DEF6 (ENSCAFG00845028897)	PPARD (ENSCAFG00845028955)	FANCE (ENSCAFG00845006312)	RPL10A (ENSCAFG00845006364)
Red fox	MODERN SPECIES	7	CUTA (ENSVVUG00000025622)	SYNGAP1 (ENSVVUG00000025640)	ZBTB9 (ENSVVUG00000025646)	BAK1 (ENSVVUG00000025650)	ENSVVUG00000025665	ENSVVUG00000025902	ENSVVUG00000026098	IP6K3 (ENSVVUG00000026099)	LEMD2 (ENSVVUG00000026101)	MLN (ENSVVUG00000026102)	GRM4 (ENSVVUG00000026106)	HMGA1 (ENSVVUG00000026109)	ENSVVUG00000026111	NUDT3 (ENSVVUG00000026114)	RPS10 (ENSVVUG00000026117)	PACSIN1 (ENSVVUG00000026124) ##22	SPDEF (ENSVVUG00000026127)	CUNH6orf106 (ENSVVUG00000026129)	ENSVVUG00000026131	BLTP3A (ENSVVUG00000026132)	TAF11 (ENSVVUG00000026146)	ANKS1A (ENSVVUG00000026149)	TCP11 (ENSVVUG00000026151)	SCUBE3 (ENSVVUG00000026167) ##16	ZNF76 (ENSVVUG00000026174)	DEF6 (ENSVVUG00000026176)	PPARD (ENSVVUG00000026179)	FANCE (ENSVVUG00000026181)	ENSVVUG00000026182	TEAD3 (ENSVVUG00000026184)	TULP1 (ENSVVUG00000026187)
Felidae	ANCESTRAL SPECIES	5	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b	ENSGT00940000158771
Panthera	ANCESTRAL SPECIES	7	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A.k	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b	ENSGT00940000158771
Tiger	MODERN SPECIES	220										MLN (ENSPTIG00000013047)	GRM4 (ENSPTIG00000010168)	HMGA1 (ENSPTIG00000009618)	SMIM29 (ENSPTIG00000008836)	NUDT3 (ENSPTIG00000007366)	RPS10 (ENSPTIG00000006681)	PACSIN1 (ENSPTIG00000004160) ##22	SPDEF (ENSPTIG00000001491)	ILRUN (ENSPTIG00000021985)	ENSPTIG00000021867	BLTP3A (ENSPTIG00000021124)	TAF11 (ENSPTIG00000020823)	ANKS1A (ENSPTIG00000019823)	TCP11 (ENSPTIG00000015068)	SCUBE3 (ENSPTIG00000011959) ##16	ZNF76 (ENSPTIG00000010061)	DEF6 (ENSPTIG00000007928)	PPARD (ENSPTIG00000006427)	FANCE (ENSPTIG00000005820)	RPL10A (ENSPTIG00000005442)	TEAD3 (ENSPTIG00000021287)	TULP1 (ENSPTIG00000020692)
Panthera_a	ANCESTRAL SPECIES	4	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A.k	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b	ENSGT00940000158771
lion	MODERN SPECIES	5	CUTA (ENSPLOG00000010187)	SYNGAP1 (ENSPLOG00000010427)	ZBTB9 (ENSPLOG00000011169)	ENSPLOG00000011229	ENSPLOG00000011334	ITPR3 (ENSPLOG00000011420)	UQCC2 (ENSPLOG00000011487)	IP6K3 (ENSPLOG00000011552)	LEMD2 (ENSPLOG00000011596)	MLN (ENSPLOG00000011654)	GRM4 (ENSPLOG00000011735)	HMGA1 (ENSPLOG00000011984)	SMIM29 (ENSPLOG00000012047)	NUDT3 (ENSPLOG00000012119)	RPS10 (ENSPLOG00000012151)	PACSIN1 (ENSPLOG00000012303) ##22	SPDEF (ENSPLOG00000012346)	ILRUN (ENSPLOG00000012403)	SNRPC (ENSPLOG00000012472)	ENSPLOG00000012605	BLTP3A (ENSPLOG00000012674)	TAF11 (ENSPLOG00000013051)	ANKS1A (ENSPLOG00000013144)	TCP11 (ENSPLOG00000013585)	SCUBE3 (ENSPLOG00000013668) ##16	ZNF76 (ENSPLOG00000013876)	DEF6 (ENSPLOG00000013958)	PPARD (ENSPLOG00000014014)	FANCE (ENSPLOG00000014168)	RPL10A (ENSPLOG00000014251)	TEAD3 (ENSPLOG00000014338)
leopard	MODERN SPECIES	30	ZBTB9 (ENSPPRG00000020032)	ENSPPRG00000013423	ENSPPRG00000012994	ENSPPRG00000012361	ITPR3 (ENSPPRG00000011688)	UQCC2 (ENSPPRG00000006383)	IP6K3 (ENSPPRG00000006044)	LEMD2 (ENSPPRG00000005449)	MLN (ENSPPRG00000005124)	ENSPPRG00000003780	GRM4 (ENSPPRG00000016859)	HMGA1 (ENSPPRG00000012047)	SMIM29 (ENSPPRG00000011469)	NUDT3 (ENSPPRG00000010831)	ENSPPRG00000010455	PACSIN1 (ENSPPRG00000009914) ##22	SPDEF (ENSPPRG00000009413)	ILRUN (ENSPPRG00000009052)	ENSPPRG00000008899	ENSPPRG00000008647	BLTP3A (ENSPPRG00000007237)	TAF11 (ENSPPRG00000006052)	ANKS1A (ENSPPRG00000005060)	TCP11 (ENSPPRG00000003440)	SCUBE3 (ENSPPRG00000023073) ##16	ZNF76 (ENSPPRG00000021755)	DEF6 (ENSPPRG00000017932)	PPARD (ENSPPRG00000016019)	FANCE (ENSPPRG00000013287)	RPL10A (ENSPPRG00000013138)	TEAD3 (ENSPPRG00000012932)
Cat	MODERN SPECIES	236	CUTA (ENSFCAG00000013655)	SYNGAP1 (ENSFCAG00000013656)	ZBTB9 (ENSFCAG00000027926)	BAK1 (ENSFCAG00000032638)	GGNBP1 (ENSFCAG00000022517)	ITPR3 (ENSFCAG00000013659)	UQCC2 (ENSFCAG00000041370)	IP6K3 (ENSFCAG00000040779)	LEMD2 (ENSFCAG00000005274)	MLN (ENSFCAG00000005275)	GRM4 (ENSFCAG00000015349)	HMGA1 (ENSFCAG00000044104)	SMIM29 (ENSFCAG00000037728)	NUDT3 (ENSFCAG00000015354)	RPS10 (ENSFCAG00000015355)	PACSIN1 (ENSFCAG00000015356) ##22	SPDEF (ENSFCAG00000015357)	ILRUN (ENSFCAG00000040568)	ENSFCAG00000044077	ENSFCAG00000043853	BLTP3A (ENSFCAG00000005879)	TAF11 (ENSFCAG00000022931)	ANKS1A (ENSFCAG00000005884)	TCP11 (ENSFCAG00000005886)	ENSFCAG00000047092	SCUBE3 (ENSFCAG00000005888) ##16	ZNF76 (ENSFCAG00000005893)	DEF6 (ENSFCAG00000005895)	PPARD (ENSFCAG00000025234)	FANCE (ENSFCAG00000012902)	RPL10A (ENSFCAG00000012904)
Laurasiatheria_c	ANCESTRAL SPECIES	6	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.q.a.a.a	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b
Chiroptera	ANCESTRAL SPECIES	3	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b	ENSGT00940000158771
Megabat	MODERN SPECIES	328																PACSIN1 (ENSPVAG00000015591) ##22	SPDEF (ENSPVAG00000015594)	ILRUN (ENSPVAG00000015595)	SNRPC (ENSPVAG00000015597)	BLTP3A (ENSPVAG00000015599)	TAF11 (ENSPVAG00000015600)	ANKS1A (ENSPVAG00000015601)	TCP11 (ENSPVAG00000015603)
Microchiroptera	ANCESTRAL SPECIES	4	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b
Greater horseshoe bat	MODERN SPECIES	21	ZBTB9 (ENSRFEG00010016671)	BAK1 (ENSRFEG00010016690)	ENSRFEG00010016790	ITPR3 (ENSRFEG00010016881)	ENSRFEG00010016929	IP6K3 (ENSRFEG00010017031)	LEMD2 (ENSRFEG00010017087)	MLN (ENSRFEG00010017151)	ENSRFEG00010017224	GRM4 (ENSRFEG00010017316)	ENSRFEG00010017624	SMIM29 (ENSRFEG00010017727)	NUDT3 (ENSRFEG00010017810)	ENSRFEG00010017884	ENSRFEG00010017910	PACSIN1 (ENSRFEG00010018068) ##22	SPDEF (ENSRFEG00010018128)	ILRUN (ENSRFEG00010018208)	ENSRFEG00010018304	BLTP3A (ENSRFEG00010018442)	TAF11 (ENSRFEG00010018509)	ANKS1A (ENSRFEG00010018694)	TCP11 (ENSRFEG00010018836)	SCUBE3 (ENSRFEG00010019173) ##16	ZNF76 (ENSRFEG00010019335)	DEF6 (ENSRFEG00010019383)	PPARD (ENSRFEG00010019439)	FANCE (ENSRFEG00010019502)	ENSRFEG00010019551	TEAD3 (ENSRFEG00010019591)	TULP1 (ENSRFEG00010019664)
Equus	ANCESTRAL SPECIES	10	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.q.a.a.a	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b
Donkey	MODERN SPECIES	28	SYNGAP1 (ENSEASG00005020883)	ZBTB9 (ENSEASG00005036178)	BAK1 (ENSEASG00005020896)	ENSEASG00005020902	ITPR3 (ENSEASG00005020906)	UQCC2 (ENSEASG00005020919)	IP6K3 (ENSEASG00005020926)	LEMD2 (ENSEASG00005024496)	MLN (ENSEASG00005020942)	GRM4 (ENSEASG00005020947)	HMGA1 (ENSEASG00005025606)	ENSEASG00005036540	ENSEASG00005020963	NUDT3 (ENSEASG00005020969)	ENSEASG00005020975	PACSIN1 (ENSEASG00005020986) ##22	SPDEF (ENSEASG00005020995)	ILRUN (ENSEASG00005021001)	SNRPC (ENSEASG00005021007)	BLTP3A (ENSEASG00005021010)	TAF11 (ENSEASG00005024329)	ANKS1A (ENSEASG00005021060)	TCP11 (ENSEASG00005032490)	SCUBE3 (ENSEASG00005021138) ##16	ZNF76 (ENSEASG00005021182)	DEF6 (ENSEASG00005021188)	PPARD (ENSEASG00005021192)	ENSEASG00005031872	FANCE (ENSEASG00005021199)	ENSEASG00005021203	RPL10A (ENSEASG00005021204)
Horse	MODERN SPECIES	12	SYNGAP1 (ENSECAG00000020868)	ZBTB9 (ENSECAG00000001767)	GGNBP1 (ENSECAG00000004978)	BAK1 (ENSECAG00000023902)	ITPR3 (ENSECAG00000007328)	ENSECAG00000031664	ENSECAG00000052831	IP6K3 (ENSECAG00000009417)	LEMD2 (ENSECAG00000012707)	MLN (ENSECAG00000014006)	GRM4 (ENSECAG00000016306)	HMGA1 (ENSECAG00000000734)	SMIM29 (ENSECAG00000005108)	NUDT3 (ENSECAG00000006023)	RPS10 (ENSECAG00000006430)	PACSIN1 (ENSECAG00000013077) ##22	SPDEF (ENSECAG00000021717)	ILRUN (ENSECAG00000000406)	ENSECAG00000053290	ENSECAG00000055666	SNRPC (ENSECAG00000026848)	BLTP3A (ENSECAG00000009741)	TAF11 (ENSECAG00000016725)	ANKS1A (ENSECAG00000019918)	TCP11 (ENSECAG00000012071)	SCUBE3 (ENSECAG00000015613) ##16	ZNF76 (ENSECAG00000014843)	DEF6 (ENSECAG00000022088)	PPARD (ENSECAG00000008227)	ENSECAG00000043329	FANCE (ENSECAG00000013190)
Artiodactyla	ANCESTRAL SPECIES	15	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00900000143577	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b
Artiodactyla_a	ANCESTRAL SPECIES	19	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b
Camelidae	ANCESTRAL SPECIES	13	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882.p	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b	ENSGT00940000158771
Arabian camel	MODERN SPECIES	12	CUTA (ENSCDRG00005021706)	SYNGAP1 (ENSCDRG00005021714)	ZBTB9 (ENSCDRG00005021729)	BAK1 (ENSCDRG00005021730)	ENSCDRG00005021734	ITPR3 (ENSCDRG00005021737)	UQCC2 (ENSCDRG00005021740)	IP6K3 (ENSCDRG00005021743)	ENSCDRG00005021748	MLN (ENSCDRG00005003452)	GRM4 (ENSCDRG00005003578)	ENSCDRG00005003857	SMIM29 (ENSCDRG00005003919)	NUDT3 (ENSCDRG00005003951)	RPS10 (ENSCDRG00005003996)	PACSIN1 (ENSCDRG00005004095) ##22	SPDEF (ENSCDRG00005004153)	ILRUN (ENSCDRG00005004197)	ENSCDRG00005004250	SNRPC (ENSCDRG00005004283)	BLTP3A (ENSCDRG00005004384)	TAF11 (ENSCDRG00005004524)	ANKS1A (ENSCDRG00005004631)	TCP11 (ENSCDRG00005008189)	SCUBE3 (ENSCDRG00005008308) ##16	ZNF76 (ENSCDRG00005008400)	DEF6 (ENSCDRG00005008572)	PPARD (ENSCDRG00005008667)	FANCE (ENSCDRG00005008852)	RPL10A (ENSCDRG00005008906)	TEAD3 (ENSCDRG00005008998)
Artiodactyla_b	ANCESTRAL SPECIES	15	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415.b	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b
Cetacea	ANCESTRAL SPECIES	7	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b.i.a	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00440000034918.q.b.a.b	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415.a	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b	ENSGT00510000046986.x.b.a
Odontoceti	ANCESTRAL SPECIES	5	ENSGT00940000153786.e.a.b	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b.i.a	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00440000034918.q.b.a.b	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415.a	ENSGT00730000110997.l	ENSGT00730000110997.k.a	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b.d	ENSGT00950000182956.b.b.b
Odontoceti_a	ANCESTRAL SPECIES	5	ENSGT00940000153786.e.a.b	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b.i.a	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00440000034918.q.b.a.b	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415.a	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b.d	ENSGT00950000182956.b.b.b	ENSGT00510000046986.x.b.a
Dolphin	MODERN SPECIES	160																PACSIN1 (ENSTTRG00000007801) ##22	SPDEF (ENSTTRG00000007816)	ILRUN (ENSTTRG00000007822)	SNRPC (ENSTTRG00000007827)	BLTP3A (ENSTTRG00000007834)	TAF11 (ENSTTRG00000007855)	ANKS1A (ENSTTRG00000007861)
Odontoceti_b	ANCESTRAL SPECIES	6	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b.i.a	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00440000034918.q.b.a.b	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415.a	ENSGT00730000110997.l	ENSGT00730000110997.k.a	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b.d	ENSGT00950000182956.b.b.b
Vaquita	MODERN SPECIES	2	CUTA (ENSPSNG00000011726)	SYNGAP1 (ENSPSNG00000012003)	ZBTB9 (ENSPSNG00000013410)	BAK1 (ENSPSNG00000013464)	ENSPSNG00000013586	ITPR3 (ENSPSNG00000013739)	ENSPSNG00000014465	UQCC2 (ENSPSNG00000014538)	IP6K3 (ENSPSNG00000014674)	LEMD2 (ENSPSNG00000014756)	MLN (ENSPSNG00000014819)	GRM4 (ENSPSNG00000015059)	SMIM29 (ENSPSNG00000015615)	NUDT3 (ENSPSNG00000015724)	ENSPSNG00000015778	PACSIN1 (ENSPSNG00000015872) ##22	SPDEF (ENSPSNG00000016130)	ENSPSNG00000016260	SNRPC (ENSPSNG00000016399)	BLTP3A (ENSPSNG00000016517)	TAF11 (ENSPSNG00000016639)	ANKS1A (ENSPSNG00000016738)	TCP11 (ENSPSNG00000016862)	SCUBE3 (ENSPSNG00000017135) ##16	ZNF76 (ENSPSNG00000017309)	DEF6 (ENSPSNG00000017425)	PPARD (ENSPSNG00000017498)	FANCE (ENSPSNG00000017689)	ENSPSNG00000017751	TEAD3 (ENSPSNG00000017802)	TULP1 (ENSPSNG00000017936)
Monodontidae	ANCESTRAL SPECIES	4	ENSGT00940000158438	ENSGT00940000153786.e.a.b.f	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b.i.a	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415.a	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b.d	ENSGT00950000182956.b.b.b	ENSGT00510000046986.x.b.a
Beluga whale	MODERN SPECIES	8	ZBTB9 (ENSDLEG00000012333)	BAK1 (ENSDLEG00000012340)	ENSDLEG00000012378	ITPR3 (ENSDLEG00000012814)	ENSDLEG00000020037	UQCC2 (ENSDLEG00000020040)	IP6K3 (ENSDLEG00000020042)	LEMD2 (ENSDLEG00000020047)	ENSDLEG00000020050	ENSDLEG00000020053	GRM4 (ENSDLEG00000020058)	HMGA1 (ENSDLEG00000020082)	ENSDLEG00000020091	NUDT3 (ENSDLEG00000020096)	RPS10 (ENSDLEG00000020098)	PACSIN1 (ENSDLEG00000020101) ##22	SPDEF (ENSDLEG00000020105)	ENSDLEG00000020109	SNRPC (ENSDLEG00000020111)	UHRF1BP1 (ENSDLEG00000020115)	TAF11 (ENSDLEG00000020131)	ANKS1A (ENSDLEG00000020137)	TCP11 (ENSDLEG00000020152)	SCUBE3 (ENSDLEG00000020160) ##16	ZNF76 (ENSDLEG00000020166)	DEF6 (ENSDLEG00000020172)	PPARD (ENSDLEG00000020180)	FANCE (ENSDLEG00000020186)	ENSDLEG00000020191	TEAD3 (ENSDLEG00000020206)	ENSDLEG00000020207
Narwhal	MODERN SPECIES	310	SYNGAP1 (ENSMMNG00015012086)	ENSMMNG00015012030	ZBTB9 (ENSMMNG00015012021)	BAK1 (ENSMMNG00015012006)	ENSMMNG00015011979	ENSMMNG00015011970	ITPR3 (ENSMMNG00015011896)	UQCC2 (ENSMMNG00015011853)	IP6K3 (ENSMMNG00015011838)	LEMD2 (ENSMMNG00015011822)	MLN (ENSMMNG00015011804)	GRM4 (ENSMMNG00015011724)	ENSMMNG00015011685	ENSMMNG00015011673	ENSMMNG00015011658	PACSIN1 (ENSMMNG00015011632) ##22	SPDEF (ENSMMNG00015011601)	ENSMMNG00015011561	SNRPC (ENSMMNG00015011510)	BLTP3A (ENSMMNG00015011466)	TAF11 (ENSMMNG00015011433)	ANKS1A (ENSMMNG00015011370)	TCP11 (ENSMMNG00015011238)	SCUBE3 (ENSMMNG00015011024) ##16	ZNF76 (ENSMMNG00015010934)	DEF6 (ENSMMNG00015010907)	PPARD (ENSMMNG00015010868)	FANCE (ENSMMNG00015010813)	ENSMMNG00015010773	TEAD3 (ENSMMNG00015010746)	TULP1 (ENSMMNG00015010597)
Sperm whale	MODERN SPECIES	9	SYNGAP1 (ENSPCTG00005012336)	ENSPCTG00005014008	ZBTB9 (ENSPCTG00005014057)	BAK1 (ENSPCTG00005014079)	ENSPCTG00005014198	ITPR3 (ENSPCTG00005014292)	UQCC2 (ENSPCTG00005015018)	ENSPCTG00005015136	MLN (ENSPCTG00005015154)	ENSPCTG00005015351	ENSPCTG00005015388	HMGA1 (ENSPCTG00005015441)	SMIM29 (ENSPCTG00005015565)	NUDT3 (ENSPCTG00005015647)	RPS10 (ENSPCTG00005015685)	PACSIN1 (ENSPCTG00005015775) ##22	SPDEF (ENSPCTG00005015978)	ILRUN (ENSPCTG00005016079)	SNRPC (ENSPCTG00005016210)	UHRF1BP1 (ENSPCTG00005016279)	TAF11 (ENSPCTG00005016379)	ANKS1A (ENSPCTG00005016466)	TCP11 (ENSPCTG00005017060)	SCUBE3 (ENSPCTG00005017357) ##16	ZNF76 (ENSPCTG00005017628)	DEF6 (ENSPCTG00005017738)	ENSPCTG00005017863	ENSPCTG00005017905	ARMC12 (ENSPCTG00005017921)	CLPSL2 (ENSPCTG00005018045)	CLPS (ENSPCTG00005018156)
Blue whale	MODERN SPECIES	2	SYNGAP1 (ENSBMSG00010010019)	ZBTB9 (ENSBMSG00010009949)	BAK1 (ENSBMSG00010009926)	ENSBMSG00010009909	ITPR3 (ENSBMSG00010009844)	UQCC2 (ENSBMSG00010009808)	IP6K3 (ENSBMSG00010009797)	LEMD2 (ENSBMSG00010009773)	MLN (ENSBMSG00010009751)	GRM4 (ENSBMSG00010009661)	HMGA1 (ENSBMSG00010009623)	SMIM29 (ENSBMSG00010009615)	ENSBMSG00010009610	NUDT3 (ENSBMSG00010009604)	ENSBMSG00010009593	PACSIN1 (ENSBMSG00010009581) ##22	SPDEF (ENSBMSG00010009566)	ENSBMSG00010009546	SNRPC (ENSBMSG00010009524)	BLTP3A (ENSBMSG00010009511)	TAF11 (ENSBMSG00010009497)	ANKS1A (ENSBMSG00010009447)	TCP11 (ENSBMSG00010009227)	SCUBE3 (ENSBMSG00010009186) ##16	ZNF76 (ENSBMSG00010009171)	DEF6 (ENSBMSG00010009154)	PPARD (ENSBMSG00010009113)	FANCE (ENSBMSG00010009091)	ENSBMSG00010009079	ENSBMSG00010009075	TEAD3 (ENSBMSG00010009054)
Pecora	ANCESTRAL SPECIES	21	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415.b	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b.f	ENSGT00950000182956.b.b.b
Percora_a	ANCESTRAL SPECIES	12	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415.b	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b.f	ENSGT00950000182956.b.b.b
Bovidae	ANCESTRAL SPECIES	13	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415.b	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b.f	ENSGT00950000182956.b.b.b
Caprinae	ANCESTRAL SPECIES	16	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415.b	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b.f.l	ENSGT00950000182956.b.b.b	ENSGT00940000158771
Goat	MODERN SPECIES	15	SYNGAP1 (ENSCHIG00000014463)	ZBTB9 (ENSCHIG00000003330)	BAK1 (ENSCHIG00000016258)	ENSCHIG00000007482	ITPR3 (ENSCHIG00000007818)	UQCC2 (ENSCHIG00000009060)	IP6K3 (ENSCHIG00000021074)	LEMD2 (ENSCHIG00000017649)	MLN (ENSCHIG00000017878)	GRM4 (ENSCHIG00000015235)	HMGA1 (ENSCHIG00000010976)	SMIM29 (ENSCHIG00000009218)	ENSCHIG00000008210	NUDT3 (ENSCHIG00000024150)	RPS10 (ENSCHIG00000026089)	PACSIN1 (ENSCHIG00000009071) ##22	SPDEF (ENSCHIG00000017087)	ILRUN (ENSCHIG00000019313)	BLTP3A (ENSCHIG00000025551)	ENSCHIG00000024450	ENSCHIG00000007802	ANKS1A (ENSCHIG00000022852)	TCP11 (ENSCHIG00000018098)	SCUBE3 (ENSCHIG00000023181) ##16	ZNF76 (ENSCHIG00000017284)	DEF6 (ENSCHIG00000015411)	PPARD (ENSCHIG00000013898)	ENSCHIG00000005328	FANCE (ENSCHIG00000024074)	ENSCHIG00000025943	TEAD3 (ENSCHIG00000018959)
Rambouillet Sheep	MODERN SPECIES	12	ZBTB9 (ENSOARG00020017726)	BAK1 (ENSOARG00020017744)	ENSOARG00020017836	ITPR3 (ENSOARG00020017959)	UQCC2 (ENSOARG00020018431)	IP6K3 (ENSOARG00020018550)	LEMD2 (ENSOARG00020018611)	MLN (ENSOARG00020018668)	GRM4 (ENSOARG00020018722)	HMGA1 (ENSOARG00020019128)	SMIM29 (ENSOARG00020019174)	ENSOARG00020019241	NUDT3 (ENSOARG00020019262)	ENSOARG00020019290	ENSOARG00020019307	PACSIN1 (ENSOARG00020019350) ##22	SPDEF (ENSOARG00020019475)	ILRUN (ENSOARG00020019597)	SNRPC (ENSOARG00020019732)	BLTP3A (ENSOARG00020019885)	ENSOARG00020020279	ANKS1A (ENSOARG00020020350)	TCP11 (ENSOARG00020020829)	SCUBE3 (ENSOARG00020021445) ##16	ZNF76 (ENSOARG00020021577)	DEF6 (ENSOARG00020021870)	PPARD (ENSOARG00020021914)	RPL10A (ENSOARG00020022050)	TEAD3 (ENSOARG00020022091)	TULP1 (ENSOARG00020022333)	FKBP5 (ENSOARG00020022803)
Bovinae	ANCESTRAL SPECIES	9	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489.c	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00390000011010.b.s.b	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415.b	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b.f	ENSGT00950000182956.b.b.b
Bos	ANCESTRAL SPECIES	17	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887.b	ENSGT00940000160955	ENSGT00390000000489.c	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00390000011010.b.s.b	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415.b	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b.f	ENSGT00950000182956.b.b.b
Bos_b	ANCESTRAL SPECIES	8	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887.b	ENSGT00940000160955	ENSGT00390000000489.c	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00390000011010.b.s.b	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415.b	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b.f	ENSGT00950000182956.b.b.b
Cow	MODERN SPECIES	15	SYNGAP1 (ENSBTAG00000020975)	ZBTB9 (ENSBTAG00000038888)	BAK1 (ENSBTAG00000000428)	GGNBP1 (ENSBTAG00000011057)	ITPR3 (ENSBTAG00000013245)	UQCC2 (ENSBTAG00000054726)	IP6K3 (ENSBTAG00000033603)	LEMD2 (ENSBTAG00000015538)	MLN (ENSBTAG00000015550)	GRM4 (ENSBTAG00000013632)	HMGA1 (ENSBTAG00000034529)	SMIM29 (ENSBTAG00000034519)	NUDT3 (ENSBTAG00000019684)	ENSBTAG00000014274	RPS10 (ENSBTAG00000015598)	PACSIN1 (ENSBTAG00000016124) ##22	SPDEF (ENSBTAG00000021993)	ILRUN (ENSBTAG00000034493)	SNRPC (ENSBTAG00000024549)	BLTP3A (ENSBTAG00000009267)	TAF11 (ENSBTAG00000016887)	ANKS1A (ENSBTAG00000016890)	TCP11 (ENSBTAG00000016891)	SCUBE3 (ENSBTAG00000009226) ##16	ZNF76 (ENSBTAG00000006170)	DEF6 (ENSBTAG00000025622)	PPARD (ENSBTAG00000017542)	FANCE (ENSBTAG00000019492)	RPL10A (ENSBTAG00000019494)	TEAD3 (ENSBTAG00000019495)	ENSBTAG00000053636
Hybrid Bos Indicus	MODERN SPECIES	15	ZBTB9 (ENSBIXG00005013532)	BAK1 (ENSBIXG00005001624)	ENSBIXG00005013470	ITPR3 (ENSBIXG00005013427)	UQCC2 (ENSBIXG00005013203)	IP6K3 (ENSBIXG00005001507)	LEMD2 (ENSBIXG00005013140)	ENSBIXG00005013091	GRM4 (ENSBIXG00005006797)	ENSBIXG00005001436	SMIM29 (ENSBIXG00005012851)	NUDT3 (ENSBIXG00005012804)	ENSBIXG00005012779	ENSBIXG00005012769	RPS10 (ENSBIXG00005012752)	PACSIN1 (ENSBIXG00005012624) ##22	SPDEF (ENSBIXG00005012540)	ILRUN (ENSBIXG00005000336)	SNRPC (ENSBIXG00005012449)	BLTP3A (ENSBIXG00005012397)	ENSBIXG00005012377	TAF11 (ENSBIXG00005000356)	ANKS1A (ENSBIXG00005001303)	TCP11 (ENSBIXG00005012284)	SCUBE3 (ENSBIXG00005012176) ##16	ZNF76 (ENSBIXG00005012070)	DEF6 (ENSBIXG00005011997)	ENSBIXG00005011966	PPARD (ENSBIXG00005001212)	ENSBIXG00005011861	FANCE (ENSBIXG00005011844)
Bos_a	ANCESTRAL SPECIES	11	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887.b	ENSGT00940000160955	ENSGT00390000000489.c	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415.b	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b.f	ENSGT00950000182956.b.b.b	ENSGT00510000046986.x.b.a
Wild yak	MODERN SPECIES	397																PACSIN1 (ENSBMUG00000002484) ##22	SPDEF (ENSBMUG00000002535)	ILRUN (ENSBMUG00000002557)
Domestic yak	MODERN SPECIES	16	BAK1 (ENSBGRG00000022225)	ENSBGRG00000022171	ITPR3 (ENSBGRG00000021666)	UQCC2 (ENSBGRG00000021583)	ENSBGRG00000021558	IP6K3 (ENSBGRG00000021534)	LEMD2 (ENSBGRG00000021442)	MLN (ENSBGRG00000021370)	GRM4 (ENSBGRG00000020991)	ENSBGRG00000020924	ENSBGRG00000020838	ENSBGRG00000020823	ENSBGRG00000020796	NUDT3 (ENSBGRG00000020713)	RPS10 (ENSBGRG00000020664)	PACSIN1 (ENSBGRG00000020626) ##22	SPDEF (ENSBGRG00000020519)	ILRUN (ENSBGRG00000020387)	ENSBGRG00000020027	ENSBGRG00000019994	BLTP3A (ENSBGRG00000019214)	TAF11 (ENSBGRG00000018993)	ANKS1A (ENSBGRG00000017530)	TCP11 (ENSBGRG00000017298)	SCUBE3 (ENSBGRG00000017185) ##16	ZNF76 (ENSBGRG00000017002)	DEF6 (ENSBGRG00000016931)	PPARD (ENSBGRG00000016651)	ENSBGRG00000016542	FANCE (ENSBGRG00000016287)	RPL10A (ENSBGRG00000016190)
American bison	MODERN SPECIES	3186	SYNGAP1 (ENSBBBG00000001211)	ZBTB9 (ENSBBBG00000014478)	BAK1 (ENSBBBG00000014474)	ENSBBBG00000014460	ITPR3 (ENSBBBG00000014413)	UQCC2 (ENSBBBG00000014109)	IP6K3 (ENSBBBG00000014104)	ENSBBBG00000014096	ENSBBBG00000014085	GRM4 (ENSBBBG00000014072)	HMGA1 (ENSBBBG00000003112)	SMIM29 (ENSBBBG00000003105)	NUDT3 (ENSBBBG00000014010)	ENSBBBG00000007549	RPS10 (ENSBBBG00000003090)	PACSIN1 (ENSBBBG00000013990) ##22	SPDEF (ENSBBBG00000013970)	ILRUN (ENSBBBG00000003059)	ENSBBBG00000013963	ENSBBBG00000013957	BLTP3A (ENSBBBG00000013943)	TAF11 (ENSBBBG00000013897)	ANKS1A (ENSBBBG00000013865)	TCP11 (ENSBBBG00000013808)	SCUBE3 (ENSBBBG00000013778) ##16	ZNF76 (ENSBBBG00000002940)	DEF6 (ENSBBBG00000001527)	PPARD (ENSBBBG00000013721)	FANCE (ENSBBBG00000013719)	RPL10A (ENSBBBG00000013708)	TEAD3 (ENSBBBG00000013702)
Siberian musk deer	MODERN SPECIES	355	SYNGAP1 (ENSMMSG00000023343)	ZBTB9 (ENSMMSG00000023399)	BAK1 (ENSMMSG00000023407)	ENSMMSG00000023420	ITPR3 (ENSMMSG00000023429)	ENSMMSG00000023443	IP6K3 (ENSMMSG00000023458)	LEMD2 (ENSMMSG00000023465)	MLN (ENSMMSG00000023475)	GRM4 (ENSMMSG00000023487)	HMGA1 (ENSMMSG00000023513)	SMIM29 (ENSMMSG00000023520)	NUDT3 (ENSMMSG00000023528)	RPS10 (ENSMMSG00000023536)	ENSMMSG00000023552	PACSIN1 (ENSMMSG00000023558) ##22	SPDEF (ENSMMSG00000023570)	ENSMMSG00000023583	SNRPC (ENSMMSG00000023609)	BLTP3A (ENSMMSG00000023628)	ENSMMSG00000023647	TAF11 (ENSMMSG00000023653)	ANKS1A (ENSMMSG00000023673)	TCP11 (ENSMMSG00000023721)	SCUBE3 (ENSMMSG00000023749) ##16	ZNF76 (ENSMMSG00000023755)	DEF6 (ENSMMSG00000023768)	PPARD (ENSMMSG00000023777)	FANCE (ENSMMSG00000004572)	ENSMMSG00000004639	TEAD3 (ENSMMSG00000004692)
Yarkand deer	MODERN SPECIES	30	KIFC1 (ENSCHYG00000005051)	PHF1 (ENSCHYG00000005145)	CUTA (ENSCHYG00000005349)	SYNGAP1 (ENSCHYG00000005513)	ZBTB9 (ENSCHYG00000005656)	BAK1 (ENSCHYG00000005696)	ENSCHYG00000005749	ITPR3 (ENSCHYG00000005797)	UQCC2 (ENSCHYG00000005875)	IP6K3 (ENSCHYG00000005950)	LEMD2 (ENSCHYG00000005984)	ENSCHYG00000006032	GRM4 (ENSCHYG00000006106)	NUDT3 (ENSCHYG00000006377)	RPS10 (ENSCHYG00000006413)	PACSIN1 (ENSCHYG00000006508) ##22	SPDEF (ENSCHYG00000006557)	ILRUN (ENSCHYG00000006613)	ENSCHYG00000006706	BLTP3A (ENSCHYG00000006803)	TAF11 (ENSCHYG00000006899)	ANKS1A (ENSCHYG00000006984)	ENSCHYG00000009019	ENSCHYG00000009047	SCUBE3 (ENSCHYG00000009366) ##16	ZNF76 (ENSCHYG00000009770)	DEF6 (ENSCHYG00000010145)	PPARD (ENSCHYG00000010282)	FANCE (ENSCHYG00000010773)	ENSCHYG00000010877	TEAD3 (ENSCHYG00000010959)
Suina	ANCESTRAL SPECIES	17	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00900000143577	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b
Pig	MODERN SPECIES	15	CUTA (ENSSSCG00000001512)	SYNGAP1 (ENSSSCG00000001513)	ZBTB9 (ENSSSCG00000060402)	ENSSSCG00000001516	ENSSSCG00000001517	ITPR3 (ENSSSCG00000001518)	UQCC2 (ENSSSCG00000030668)	IP6K3 (ENSSSCG00000039272)	LEMD2 (ENSSSCG00000001520)	MLN (ENSSSCG00000001521)	GRM4 (ENSSSCG00000001523)	HMGA1 (ENSSSCG00000032242)	SMIM29 (ENSSSCG00000023160)	NUDT3 (ENSSSCG00000031593)	RPS10 (ENSSSCG00000060493)	PACSIN1 (ENSSSCG00000027053) ##22	SPDEF (ENSSSCG00000036573)	ENSSSCG00000037476	ILRUN (ENSSSCG00000001527)	SNRPC (ENSSSCG00000001531)	BLTP3A (ENSSSCG00000001532)	TAF11 (ENSSSCG00000001533)	ANKS1A (ENSSSCG00000001534)	TCP11 (ENSSSCG00000001535)	SCUBE3 (ENSSSCG00000001536) ##16	ZNF76 (ENSSSCG00000001537)	DEF6 (ENSSSCG00000001538)	PPARD (ENSSSCG00000001539)	FANCE (ENSSSCG00000001546)	RPL10A (ENSSSCG00000001543)	TEAD3 (ENSSSCG00000001544)
Chacoan peccary	MODERN SPECIES	782	CUTA (ENSCWAG00000006165)	SYNGAP1 (ENSCWAG00000006055)	ZBTB9 (ENSCWAG00000006043)	BAK1 (ENSCWAG00000006011)	ENSCWAG00000005968	ITPR3 (ENSCWAG00000005745)	UQCC2 (ENSCWAG00000005671)	IP6K3 (ENSCWAG00000005636)	LEMD2 (ENSCWAG00000005562)	MLN (ENSCWAG00000005531)	GRM4 (ENSCWAG00000012858)	HMGA1 (ENSCWAG00000012769)	SMIM29 (ENSCWAG00000012681)	NUDT3 (ENSCWAG00000012650)	RPS10 (ENSCWAG00000012591)	PACSIN1 (ENSCWAG00000012455) ##22	SPDEF (ENSCWAG00000012352)	ENSCWAG00000012314	ILRUN (ENSCWAG00000012228)	SNRPC (ENSCWAG00000012141)	BLTP3A (ENSCWAG00000012054)	TAF11 (ENSCWAG00000011982)	ANKS1A (ENSCWAG00000011550)	TCP11 (ENSCWAG00000010884)	SCUBE3 (ENSCWAG00000010700) ##16	ZNF76 (ENSCWAG00000010458)	DEF6 (ENSCWAG00000010415)	PPARD (ENSCWAG00000010262)	FANCE (ENSCWAG00000010228)	RPL10A (ENSCWAG00000010172)	TEAD3 (ENSCWAG00000010092)
Euarchontoglires	ANCESTRAL SPECIES	7	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00730000110997.k.a	ENSGT00900000143577	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705
Primates	ANCESTRAL SPECIES	5	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00900000143577	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b
Strepsirrhini	ANCESTRAL SPECIES	7	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b
Lemuriformes	ANCESTRAL SPECIES	3	ENSGT00950000183180.a.b	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b	ENSGT00940000158771
Mouse lemur	MODERN SPECIES	28	ENSMICG00000033055	ADGRF4 (ENSMICG00000015299)	OPN5 (ENSMICG00000015348)	PTCHD4 (ENSMICG00000015380)	BAK1 (ENSMICG00000031665)	ITPR3 (ENSMICG00000016370)	ENSMICG00000016469	IP6K3 (ENSMICG00000016472)	LEMD2 (ENSMICG00000016479)	MLN (ENSMICG00000016491)	GRM4 (ENSMICG00000003131)	HMGA1 (ENSMICG00000036252)	SMIM29 (ENSMICG00000029002)	NUDT3 (ENSMICG00000026429)	ENSMICG00000031123	PACSIN1 (ENSMICG00000030734) ##22	SPDEF (ENSMICG00000013437)	ENSMICG00000029461	ILRUN (ENSMICG00000047546)	ENSMICG00000007339	BLTP3A (ENSMICG00000014035)	ENSMICG00000014063	ENSMICG00000047097	ENSMICG00000047647	ANKS1A (ENSMICG00000014070)	TCP11 (ENSMICG00000005056)	SCUBE3 (ENSMICG00000005061) ##16	ZNF76 (ENSMICG00000015530)	ENSMICG00000009583	DEF6 (ENSMICG00000015541)	PPARD (ENSMICG00000000028)
Lemuriformes_a	ANCESTRAL SPECIES	4	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT00390000008099.u.b	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b	ENSGT00940000158771
Greater bamboo lemur	MODERN SPECIES	318		ENSPSMG00000009034	BAK1 (ENSPSMG00000009025)	ENSPSMG00000009013	UQCC2 (ENSPSMG00000008888)	IP6K3 (ENSPSMG00000008873)	LEMD2 (ENSPSMG00000008863)	MLN (ENSPSMG00000008840)	GRM4 (ENSPSMG00000008799)	ENSPSMG00000008675	SMIM29 (ENSPSMG00000008643)	ENSPSMG00000008613	ENSPSMG00000008606	NUDT3 (ENSPSMG00000008602)	RPS10 (ENSPSMG00000008574)	PACSIN1 (ENSPSMG00000008541) ##22	SPDEF (ENSPSMG00000008512)
Coquerels sifaka	MODERN SPECIES	356											GRM4 (ENSPCOG00000025240)	HMGA1 (ENSPCOG00000022375)	SMIM29 (ENSPCOG00000019890)	NUDT3 (ENSPCOG00000013295)	RPS10 (ENSPCOG00000015821)	PACSIN1 (ENSPCOG00000013300) ##22	SPDEF (ENSPCOG00000027590)	ILRUN (ENSPCOG00000026218)	SNRPC (ENSPCOG00000004904)	BLTP3A (ENSPCOG00000025815)	TAF11 (ENSPCOG00000014818)	ANKS1A (ENSPCOG00000021030)	TCP11 (ENSPCOG00000024469)	SCUBE3 (ENSPCOG00000021049) ##16	ZNF76 (ENSPCOG00000013296)	DEF6 (ENSPCOG00000026130)	PPARD (ENSPCOG00000028127)	FANCE (ENSPCOG00000003132)	RPL10A (ENSPCOG00000023793)	TEAD3 (ENSPCOG00000021314)	TULP1 (ENSPCOG00000021849)
Bushbaby	MODERN SPECIES	146	ZBTB9 (ENSOGAG00000026628)	BAK1 (ENSOGAG00000015573)	ENSOGAG00000015578	ITPR3 (ENSOGAG00000015581)	UQCC2 (ENSOGAG00000015604)	IP6K3 (ENSOGAG00000015606)	LEMD2 (ENSOGAG00000030156)	MLN (ENSOGAG00000015614)	GRM4 (ENSOGAG00000029055)	ENSOGAG00000025948	SMIM29 (ENSOGAG00000015674)	NUDT3 (ENSOGAG00000034590)	ENSOGAG00000031287	ENSOGAG00000001365	ENSOGAG00000027856	PACSIN1 (ENSOGAG00000029242) ##22	SPDEF (ENSOGAG00000011260)	ILRUN (ENSOGAG00000011264)	ENSOGAG00000008755	BLTP3A (ENSOGAG00000016353)	TAF11 (ENSOGAG00000008522)	ANKS1A (ENSOGAG00000008526)	ENSOGAG00000028462	TCP11 (ENSOGAG00000031615)	SCUBE3 (ENSOGAG00000002933) ##16	ZNF76 (ENSOGAG00000002935)	DEF6 (ENSOGAG00000002936)	PPARD (ENSOGAG00000000630)	ENSOGAG00000024631	FANCE (ENSOGAG00000002939)	TEAD3 (ENSOGAG00000002943)
Haplorrhini	ANCESTRAL SPECIES	2	ENSGT00950000183180.a.b	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00900000143577	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b
Simiiformes	ANCESTRAL SPECIES	5	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00910000146977	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329.l	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r.i	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00900000143577	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b
Platyrrhini	ANCESTRAL SPECIES	2	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00910000146977	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329.k.a	ENSGT00390000011871	ENSGT00390000017146.a.m.b	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r.h.b	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00900000143577	ENSGT00490000043415.c	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b
Cebidae	ANCESTRAL SPECIES	5	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329.k.a	ENSGT00390000011871	ENSGT00390000017146.a.m.b	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r.h.b	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00900000143577	ENSGT00490000043415.c	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b
Cebidae_a	ANCESTRAL SPECIES	25	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329.k.a	ENSGT00390000011871	ENSGT00390000017146.a.m.b	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.q.a.a.a.c.a	ENSGT00390000014660.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00900000143577	ENSGT00490000043415.c	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b
Bolivian squirrel monkey	MODERN SPECIES	49	KIFC1 (ENSSBOG00000023255)	PHF1 (ENSSBOG00000024315)	CUTA (ENSSBOG00000033274)	SYNGAP1 (ENSSBOG00000036152)	ZBTB9 (ENSSBOG00000014339)	ITPR3 (ENSSBOG00000021882)	UQCC2 (ENSSBOG00000030900)	IP6K3 (ENSSBOG00000034249)	ENSSBOG00000021386	MLN (ENSSBOG00000028942)	GRM4 (ENSSBOG00000020919)	HMGA1 (ENSSBOG00000000498)	SMIM29 (ENSSBOG00000030537)	NUDT3 (ENSSBOG00000022644)	ENSSBOG00000034667	PACSIN1 (ENSSBOG00000025412) ##22	ENSSBOG00000033685	SPDEF (ENSSBOG00000026084)	ILRUN (ENSSBOG00000026233)	ENSSBOG00000025658	ENSSBOG00000031528	BLTP3A (ENSSBOG00000020282)	ENSSBOG00000034253	ANKS1A (ENSSBOG00000023296)	TCP11 (ENSSBOG00000025221)	SCUBE3 (ENSSBOG00000033009) ##16	ZNF76 (ENSSBOG00000030807)	DEF6 (ENSSBOG00000027933)	PPARD (ENSSBOG00000027821)	FANCE (ENSSBOG00000023245)	RPL10A (ENSSBOG00000027649)
Capuchin	MODERN SPECIES	24	SYNGAP1 (ENSCCAG00000037957)	ZBTB9 (ENSCCAG00000001949)	BAK1 (ENSCCAG00000037937)	ITPR3 (ENSCCAG00000029014)	UQCC2 (ENSCCAG00000028094)	IP6K3 (ENSCCAG00000037337)	LEMD2 (ENSCCAG00000007623)	MLN (ENSCCAG00000025534)	GRM4 (ENSCCAG00000024807)	ENSCCAG00000024304	ENSCCAG00000033605	ENSCCAG00000029813	NUDT3 (ENSCCAG00000024850)	ENSCCAG00000028065	ENSCCAG00000026459	PACSIN1 (ENSCCAG00000024229) ##22	SPDEF (ENSCCAG00000032174)	ENSCCAG00000029431	ILRUN (ENSCCAG00000018395)	ENSCCAG00000022209	UHRF1BP1 (ENSCCAG00000028890)	TAF11 (ENSCCAG00000027206)	ANKS1A (ENSCCAG00000003428)	TCP11 (ENSCCAG00000035758)	SCUBE3 (ENSCCAG00000034166) ##16	ZNF76 (ENSCCAG00000030733)	DEF6 (ENSCCAG00000032504)	ENSCCAG00000033879	PPARD (ENSCCAG00000034461)	FANCE (ENSCCAG00000034008)	ENSCCAG00000032525
Marmoset	MODERN SPECIES	16	ZBTB9 (ENSCJAG00000021692)	ENSCJAG00000084888	ENSCJAG00000084010	ENSCJAG00000016047	ITPR3 (ENSCJAG00000012111)	ENSCJAG00000072978	UQCC2 (ENSCJAG00000012180)	IP6K3 (ENSCJAG00000044270)	LEMD2 (ENSCJAG00000012200)	ENSCJAG00000012209	GRM4 (ENSCJAG00000084753)	HMGA1 (ENSCJAG00000039587)	SMIM29 (ENSCJAG00000015241)	NUDT3 (ENSCJAG00000039344)	ENSCJAG00000015250	PACSIN1 (ENSCJAG00000015266) ##22	ENSCJAG00000078363	SPDEF (ENSCJAG00000015294)	ILRUN (ENSCJAG00000015304)	ENSCJAG00000015321	ENSCJAG00000083830	BLTP3A (ENSCJAG00000015333)	TAF11 (ENSCJAG00000015388)	ANKS1A (ENSCJAG00000034880)	TCP11 (ENSCJAG00000015429)	SCUBE3 (ENSCJAG00000015443) ##16	ENSCJAG00000082425	ENSCJAG00000015519	PPARD (ENSCJAG00000015604)	ENSCJAG00000066888	ENSCJAG00000082871
Mas night monkey	MODERN SPECIES	1007	BAK1 (ENSANAG00000026323)	ITPR3 (ENSANAG00000037391)	ENSANAG00000035534	UQCC2 (ENSANAG00000036236)	IP6K3 (ENSANAG00000036812)	LEMD2 (ENSANAG00000021561)	MLN (ENSANAG00000026306)	GRM4 (ENSANAG00000036603)	ENSANAG00000024318	ENSANAG00000033169	ENSANAG00000026505	ENSANAG00000019819	ENSANAG00000032790	ENSANAG00000023528	ENSANAG00000020059	PACSIN1 (ENSANAG00000034324) ##22	SPDEF (ENSANAG00000028395)	ENSANAG00000019816	ENSANAG00000020523	ENSANAG00000019696	BLTP3A (ENSANAG00000026155)	TAF11 (ENSANAG00000038167)	ANKS1A (ENSANAG00000033183)	TCP11 (ENSANAG00000025285)	SCUBE3 (ENSANAG00000037213) ##16	ZNF76 (ENSANAG00000036344)	DEF6 (ENSANAG00000037250)	PPARD (ENSANAG00000035545)	FANCE (ENSANAG00000027672)	RPL10A (ENSANAG00000034960)	TEAD3 (ENSANAG00000028458)
Catarrhini	ANCESTRAL SPECIES	5	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A.i.a	ENSGT00940000157078	ENSGT00910000146977	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329.l	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r.i	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00950000182857.a.a.b.a.r.a.b.b.b	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a.e	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b
Cercopithecidae	ANCESTRAL SPECIES	4	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A.i.a	ENSGT00940000157078	ENSGT00910000146977	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329.l	ENSGT00410000025882.b	ENSGT00390000011871	ENSGT00940000157882	ENSGT00440000034918.r.i	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00950000182857.a.a.b.a.r.a.b.b.b	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a.e	ENSGT00940000155806	ENSGT00550000074838.e	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b
Cercopithecinae	ANCESTRAL SPECIES	6	ENSGT00940000162408	ENSGT01090000260100.A.i.a	ENSGT00940000157078	ENSGT00510000048041.p	ENSGT00910000146977	ENSGT00510000048041.o	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329.l	ENSGT00410000025882.b	ENSGT00390000011871	ENSGT00940000157882	ENSGT00440000034918.r.i	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a.e	ENSGT00940000155806	ENSGT00550000074838.e	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT00940000162408	ENSGT01090000260100.A.i.a	ENSGT00940000157078	ENSGT00910000146977	ENSGT00510000048041.o	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329.l	ENSGT00410000025882.b	ENSGT00390000011871	ENSGT00910000148034	ENSGT00940000157882	ENSGT00440000034918.r.i	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a.e	ENSGT00940000155806	ENSGT00550000074838.e	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b
Macaca	ANCESTRAL SPECIES	9	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A.i.a	ENSGT00940000157078	ENSGT00910000146977	ENSGT00510000048041.o	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489.f	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329.l	ENSGT00390000011871	ENSGT00910000148034	ENSGT00940000157882	ENSGT00440000034918.r.i	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00730000110997.k.a	ENSGT00600000084428.a	ENSGT00390000013228.e.a.e	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b
Pig-tailed macaque	MODERN SPECIES	528	SYNGAP1 (ENSMNEG00000038386)	ZBTB9 (ENSMNEG00000004451)	BAK1 (ENSMNEG00000029718)	ITPR3 (ENSMNEG00000036557)	ENSMNEG00000041642	ENSMNEG00000029597	IP6K3 (ENSMNEG00000038698)	LEMD2 (ENSMNEG00000038123)	MLN (ENSMNEG00000032540)	GRM4 (ENSMNEG00000044576)	ENSMNEG00000005671	ENSMNEG00000041775	ENSMNEG00000023546	NUDT3 (ENSMNEG00000033006)	ENSMNEG00000043352	PACSIN1 (ENSMNEG00000039933) ##22	SPDEF (ENSMNEG00000044984)	ILRUN (ENSMNEG00000034761)	SNRPC (ENSMNEG00000032731)	BLTP3A (ENSMNEG00000043690)	TAF11 (ENSMNEG00000032309)	ANKS1A (ENSMNEG00000042805)	TCP11 (ENSMNEG00000037244)	SCUBE3 (ENSMNEG00000022720) ##16	ZNF76 (ENSMNEG00000036701)	DEF6 (ENSMNEG00000044475)	ENSMNEG00000016032	PPARD (ENSMNEG00000042655)	FANCE (ENSMNEG00000038022)	RPL10A (ENSMNEG00000040176)	TEAD3 (ENSMNEG00000035473)
Macaca_a	ANCESTRAL SPECIES	9	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A.i.a	ENSGT00390000015789.c.a.b	ENSGT00910000146977	ENSGT00940000157078	ENSGT00510000048041.o	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489.f	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329.l	ENSGT00390000011871	ENSGT00940000157882	ENSGT00440000034918.r.i	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.a.a.b.b.a.a.a.a.a.a.a.a	ENSGT00730000110997.k.a	ENSGT00600000084428.a	ENSGT00390000013228.e.a.e	ENSGT00940000155806	ENSGT01100000263920.C	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b
Rhesus	MODERN SPECIES	14	ZBTB9 (ENSMMUG00000029765)	BAK1 (ENSMMUG00000063304)	ENSMMUG00000019505	ENSMMUG00000052902	ENSMMUG00000058175	ITPR3 (ENSMMUG00000047729)	UQCC2 (ENSMMUG00000020703)	IP6K3 (ENSMMUG00000045656)	LEMD2 (ENSMMUG00000021734)	MLN (ENSMMUG00000021738)	GRM4 (ENSMMUG00000023046)	HMGA1 (ENSMMUG00000019529)	ENSMMUG00000019531	ENSMMUG00000029987	NUDT3 (ENSMMUG00000019532)	PACSIN1 (ENSMMUG00000007811) ##22	SPDEF (ENSMMUG00000056340)	ENSMMUG00000058767	ILRUN (ENSMMUG00000022824)	ENSMMUG00000063472	SNRPC (ENSMMUG00000000869)	BLTP3A (ENSMMUG00000021712)	TAF11 (ENSMMUG00000021715)	ANKS1A (ENSMMUG00000021718)	ENSMMUG00000060313	TCP11 (ENSMMUG00000021720)	SCUBE3 (ENSMMUG00000023557) ##16	ZNF76 (ENSMMUG00000023559)	DEF6 (ENSMMUG00000023560)	PPARD (ENSMMUG00000015904)	FANCE (ENSMMUG00000015906)
Crab-eating macaque	MODERN SPECIES	14	EIF1 (ENSMFAG00000046072)	ENSMFAG00000037076	ITPR3 (ENSMFAG00000039709)	UQCC2 (ENSMFAG00000039620)	IP6K3 (ENSMFAG00000036096)	ENSMFAG00000001775	MLN (ENSMFAG00000032195)	GRM4 (ENSMFAG00000043495)	ENSMFAG00000059689	ENSMFAG00000001292	ENSMFAG00000065608	ENSMFAG00000064073	ENSMFAG00000028033	NUDT3 (ENSMFAG00000042647)	ENSMFAG00000039924	PACSIN1 (ENSMFAG00000036381) ##22	ENSMFAG00000057349	SPDEF (ENSMFAG00000031435)	ENSMFAG00000065156	ENSMFAG00000031764	BLTP3A (ENSMFAG00000000555)	TAF11 (ENSMFAG00000035760)	ANKS1A (ENSMFAG00000003052)	ENSMFAG00000065351	ENSMFAG00000050189	TCP11 (ENSMFAG00000003878)	ENSMFAG00000063658	SCUBE3 (ENSMFAG00000035997) ##16	ENSMFAG00000052092	ZNF76 (ENSMFAG00000036518)	ENSMFAG00000053098
Cercopithecinae_b	ANCESTRAL SPECIES	18	ENSGT00940000162408	ENSGT01090000260100.A.i.a	ENSGT00940000157078	ENSGT00910000146977	ENSGT00510000048041.o	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329.l	ENSGT00410000025882.b	ENSGT00390000011871	ENSGT00910000148034	ENSGT00940000157882	ENSGT00440000034918.q.b.a.a	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a.e	ENSGT00940000155806	ENSGT00550000074838.e	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b
Olive baboon	MODERN SPECIES	16	SYNGAP1 (ENSPANG00000014561)	ZBTB9 (ENSPANG00000012823)	ENSPANG00000039481	BAK1 (ENSPANG00000031258)	ITPR3 (ENSPANG00000017411)	ENSPANG00000007623	UQCC2 (ENSPANG00000010760)	IP6K3 (ENSPANG00000037017)	LEMD2 (ENSPANG00000017101)	MLN (ENSPANG00000009106)	GRM4 (ENSPANG00000012328)	HMGA1 (ENSPANG00000043347)	SMIM29 (ENSPANG00000029208)	ENSPANG00000016480	ENSPANG00000049744	PACSIN1 (ENSPANG00000016481) ##22	SPDEF (ENSPANG00000016482)	ILRUN (ENSPANG00000020768)	ENSPANG00000038047	ENSPANG00000049468	SNRPC (ENSPANG00000022802)	BLTP3A (ENSPANG00000008271)	TAF11 (ENSPANG00000009105)	ANKS1A (ENSPANG00000016478)	ENSPANG00000048759	TCP11 (ENSPANG00000024080)	SCUBE3 (ENSPANG00000021152) ##16	ZNF76 (ENSPANG00000021154)	DEF6 (ENSPANG00000021155)	PPARD (ENSPANG00000016477)	FANCE (ENSPANG00000011154)
Cercopithecinae_d	ANCESTRAL SPECIES	13	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A.i.a	ENSGT00940000157078	ENSGT00910000146977	ENSGT00510000048041.o	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329.l	ENSGT00390000011871	ENSGT00910000148034	ENSGT00940000157882	ENSGT00440000034918.q.b.a.a	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a.e	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b	ENSGT00940000158771
Drill	MODERN SPECIES	941	CUTA (ENSMLEG00000022508)	SYNGAP1 (ENSMLEG00000029147)	ZBTB9 (ENSMLEG00000011741)	BAK1 (ENSMLEG00000033537)	ITPR3 (ENSMLEG00000034958)	ENSMLEG00000009976	ENSMLEG00000012668	IP6K3 (ENSMLEG00000039478)	MLN (ENSMLEG00000039698)	GRM4 (ENSMLEG00000039397)	ENSMLEG00000042857	ENSMLEG00000041073	ENSMLEG00000017707	NUDT3 (ENSMLEG00000041057)	RPS10 (ENSMLEG00000020492)	PACSIN1 (ENSMLEG00000015133) ##22	SPDEF (ENSMLEG00000043720)	ILRUN (ENSMLEG00000036904)	ENSMLEG00000033916	BLTP3A (ENSMLEG00000029436)	TAF11 (ENSMLEG00000023789)	ANKS1A (ENSMLEG00000033172)	TCP11 (ENSMLEG00000038731)	SCUBE3 (ENSMLEG00000010066) ##16	ZNF76 (ENSMLEG00000040578)	DEF6 (ENSMLEG00000039879)	PPARD (ENSMLEG00000039133)	FANCE (ENSMLEG00000029995)	RPL10A (ENSMLEG00000043266)	TEAD3 (ENSMLEG00000034526)	TULP1 (ENSMLEG00000036325)
Sooty mangabey	MODERN SPECIES	97	SYNGAP1 (ENSCATG00000038034)	ZBTB9 (ENSCATG00000022705)	BAK1 (ENSCATG00000038803)	ENSCATG00000036623	ITPR3 (ENSCATG00000037656)	UQCC2 (ENSCATG00000043597)	IP6K3 (ENSCATG00000036617)	LEMD2 (ENSCATG00000005671)	MLN (ENSCATG00000041664)	GRM4 (ENSCATG00000022825)	ENSCATG00000042051	ENSCATG00000038836	ENSCATG00000041218	NUDT3 (ENSCATG00000043783)	RPS10 (ENSCATG00000043558)	PACSIN1 (ENSCATG00000030095) ##22	SPDEF (ENSCATG00000018528)	ILRUN (ENSCATG00000030451)	SNRPC (ENSCATG00000035787)	BLTP3A (ENSCATG00000030943)	TAF11 (ENSCATG00000036264)	ENSCATG00000009047	ANKS1A (ENSCATG00000008652)	TCP11 (ENSCATG00000023254)	SCUBE3 (ENSCATG00000043555) ##16	ZNF76 (ENSCATG00000004304)	DEF6 (ENSCATG00000043169)	PPARD (ENSCATG00000035831)	FANCE (ENSCATG00000034718)	RPL10A (ENSCATG00000028533)	TEAD3 (ENSCATG00000042257)
Vervet Monkey	MODERN SPECIES	8	KIFC1 (ENSCSAG00000009576)	PHF1 (ENSCSAG00000009589)	CUTA (ENSCSAG00000009582)	SYNGAP1 (ENSCSAG00000009596)	ZBTB9 (ENSCSAG00000019306)	BAK1 (ENSCSAG00000009617)	ITPR3 (ENSCSAG00000009649)	UQCC2 (ENSCSAG00000009662)	IP6K3 (ENSCSAG00000009672)	LEMD2 (ENSCSAG00000009695)	MLN (ENSCSAG00000009706)	GRM4 (ENSCSAG00000009763)	HMGA1 (ENSCSAG00000009775)	ENSCSAG00000009778	NUDT3 (ENSCSAG00000009782)	PACSIN1 (ENSCSAG00000009789) ##22	SPDEF (ENSCSAG00000009798)	ILRUN (ENSCSAG00000009818)	SNRPC (ENSCSAG00000009821)	ENSCSAG00000019305	BLTP3A (ENSCSAG00000009829)	ENSCSAG00000009843	ANKS1A (ENSCSAG00000009858)	TCP11 (ENSCSAG00000009892)	ENSCSAG00000009901	SCUBE3 (ENSCSAG00000009938) ##16	ZNF76 (ENSCSAG00000009955)	DEF6 (ENSCSAG00000009963)	PPARD (ENSCSAG00000009967)	FANCE (ENSCSAG00000009968)	ENSCSAG00000009972
Rhinopithecus	ANCESTRAL SPECIES	31	ENSGT00910000146977	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329.l.d.b	ENSGT00730000111329.l.d.a	ENSGT00410000025882.b	ENSGT00950000182872.f.a.a.b.r.b.a.a	ENSGT00910000148034	ENSGT00940000157882	ENSGT00440000034918.r.h.a	ENSGT00440000034918.q.a.a.a.d.m	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00950000182857.a.a.b.a.r.a.b.b.b	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a.e	ENSGT00940000155806	ENSGT00550000074838.e	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00950000182956.b.b.b
Golden snub-nosed monkey	MODERN SPECIES	3244								GRM4 (ENSRROG00000035463)	ENSRROG00000022352	SMIM29 (ENSRROG00000030413)	ENSRROG00000027348	ENSRROG00000014514	NUDT3 (ENSRROG00000019323)	ENSRROG00000030593	ENSRROG00000011959	PACSIN1 (ENSRROG00000044346) ##22	SPDEF (ENSRROG00000030067)	ILRUN (ENSRROG00000039638)
Black snub-nosed monkey	MODERN SPECIES	1651	ZBTB9 (ENSRBIG00000025097)	BAK1 (ENSRBIG00000042255)	ENSRBIG00000035323	ITPR3 (ENSRBIG00000044105)	ENSRBIG00000014909	IP6K3 (ENSRBIG00000028384)	LEMD2 (ENSRBIG00000031339)	MLN (ENSRBIG00000012093)	GRM4 (ENSRBIG00000037392)	ENSRBIG00000030072	SMIM29 (ENSRBIG00000028207)	ENSRBIG00000027690	ENSRBIG00000012680	NUDT3 (ENSRBIG00000028109)	ENSRBIG00000037448	PACSIN1 (ENSRBIG00000037018) ##22	SPDEF (ENSRBIG00000002665)	ENSRBIG00000043717	ILRUN (ENSRBIG00000041529)	ENSRBIG00000037567	BLTP3A (ENSRBIG00000042064)	TAF11 (ENSRBIG00000021601)	ANKS1A (ENSRBIG00000037624)	ENSRBIG00000034989	TCP11 (ENSRBIG00000026596)	SCUBE3 (ENSRBIG00000004204) ##16	ZNF76 (ENSRBIG00000036275)	DEF6 (ENSRBIG00000043555)
Hominoidea	ANCESTRAL SPECIES	4	ENSGT00940000162408	ENSGT01090000260100.A.i.a	ENSGT00940000157078	ENSGT00910000146977	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329.l.a.b	ENSGT00390000011871	ENSGT00730000111329.l.b	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r.i	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00950000182857.a.a.b.a.r.a.b.b.b	ENSGT00490000043415	ENSGT00730000110997.k.a	ENSGT00440000034918.q.a.b	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a.e	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705
Hominidae	ANCESTRAL SPECIES	5	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A.i.a	ENSGT00940000157078	ENSGT00910000146977	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329.l.a.b	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r.i	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.k.a	ENSGT00440000034918.q.a.b	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a.e	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	4	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A.i.a	ENSGT00940000157078	ENSGT00910000146977	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329.l.a.b	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.q.b.a.a	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415.e	ENSGT00730000110997.k.a	ENSGT00600000084428.a	ENSGT00390000013228.e.a.e	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b	ENSGT00940000158771
Gorilla	MODERN SPECIES	19	SYNGAP1 (ENSGGOG00000009923)	ZBTB9 (ENSGGOG00000040099)	ENSGGOG00000025210	BAK1 (ENSGGOG00000022462)	ITPR3 (ENSGGOG00000016235)	ENSGGOG00000023740	UQCC2 (ENSGGOG00000043321)	IP6K3 (ENSGGOG00000016288)	LEMD2 (ENSGGOG00000008126)	MLN (ENSGGOG00000008134)	GRM4 (ENSGGOG00000005313)	ENSGGOG00000025804	ENSGGOG00000024443	ENSGGOG00000038559	NUDT3 (ENSGGOG00000039407)	PACSIN1 (ENSGGOG00000023013) ##22	SPDEF (ENSGGOG00000000383)	ILRUN (ENSGGOG00000000388)	SNRPC (ENSGGOG00000012499)	BLTP3A (ENSGGOG00000014664)	TAF11 (ENSGGOG00000012371)	ANKS1A (ENSGGOG00000007973)	TCP11 (ENSGGOG00000016087)	SCUBE3 (ENSGGOG00000016378) ##16	ZNF76 (ENSGGOG00000014188)	DEF6 (ENSGGOG00000016204)	PPARD (ENSGGOG00000016781)	RPL10A (ENSGGOG00000028140)	TEAD3 (ENSGGOG00000001847)	TULP1 (ENSGGOG00000001850)	ENSGGOG00000028262
Homo/Pan group	ANCESTRAL SPECIES	5	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A.i.a	ENSGT00940000157078	ENSGT00910000146977	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329.l.a.b	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.q.b.a.a	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415.e	ENSGT00730000110997.k.a	ENSGT00600000084428.a	ENSGT00390000013228.e.a.e	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b	ENSGT00940000158771
Human	MODERN SPECIES	18	CUTA (ENSG00000112514)	SYNGAP1 (ENSG00000197283)	ZBTB9 (ENSG00000213588)	BAK1 (ENSG00000030110)	ITPR3 (ENSG00000096433)	UQCC2 (ENSG00000137288)	IP6K3 (ENSG00000161896)	LEMD2 (ENSG00000161904)	MLN (ENSG00000096395)	GRM4 (ENSG00000124493)	HMGA1 (ENSG00000137309)	SMIM29 (ENSG00000186577)	NUDT3 (ENSG00000272325)	RPS10-NUDT3 (ENSG00000270800)	RPS10 (ENSG00000124614)	PACSIN1 (ENSG00000124507) ##22	SPDEF (ENSG00000124664)	ILRUN (ENSG00000196821)	SNRPC (ENSG00000124562)	BLTP3A (ENSG00000065060)	TAF11 (ENSG00000064995)	ANKS1A (ENSG00000064999)	TCP11 (ENSG00000124678)	SCUBE3 (ENSG00000146197) ##16	ZNF76 (ENSG00000065029)	DEF6 (ENSG00000023892)	PPARD (ENSG00000112033)	FANCE (ENSG00000112039)	RPL10A (ENSG00000198755)	TEAD3 (ENSG00000007866)	TULP1 (ENSG00000112041)
Pan	ANCESTRAL SPECIES	5	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A.i.a	ENSGT00940000157078	ENSGT00910000146977	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329.l.a.b	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00910000148210	ENSGT00440000034918.r.i	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415.e	ENSGT00730000110997.k.a	ENSGT00600000084428.a	ENSGT00390000013228.e.a.e	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b	ENSGT00940000158771
Chimpanzee	MODERN SPECIES	19	SYNGAP1 (ENSPTRG00000033928)	ZBTB9 (ENSPTRG00000018052)	BAK1 (ENSPTRG00000018053)	ITPR3 (ENSPTRG00000018054)	ENSPTRG00000044431	UQCC2 (ENSPTRG00000018055)	IP6K3 (ENSPTRG00000018056)	LEMD2 (ENSPTRG00000018057)	MLN (ENSPTRG00000018058)	GRM4 (ENSPTRG00000018059)	HMGA1 (ENSPTRG00000040884)	SMIM29 (ENSPTRG00000018061)	NUDT3 (ENSPTRG00000018062)	ENSPTRG00000052440	ENSPTRG00000018063	PACSIN1 (ENSPTRG00000018064) ##22	SPDEF (ENSPTRG00000018065)	ILRUN (ENSPTRG00000018068)	SNRPC (ENSPTRG00000018070)	BLTP3A (ENSPTRG00000018074)	TAF11 (ENSPTRG00000018075)	ANKS1A (ENSPTRG00000018076)	TCP11 (ENSPTRG00000018077)	SCUBE3 (ENSPTRG00000018079) ##16	ZNF76 (ENSPTRG00000018080)	DEF6 (ENSPTRG00000018081)	PPARD (ENSPTRG00000018082)	FANCE (ENSPTRG00000018084)	RPL10A (ENSPTRG00000018085)	TEAD3 (ENSPTRG00000018086)	TULP1 (ENSPTRG00000018087)
Bonobo	MODERN SPECIES	19	SYNGAP1 (ENSPPAG00000036420)	ZBTB9 (ENSPPAG00000016279)	BAK1 (ENSPPAG00000029631)	ITPR3 (ENSPPAG00000040289)	ENSPPAG00000024853	UQCC2 (ENSPPAG00000039893)	IP6K3 (ENSPPAG00000032091)	ENSPPAG00000035724	MLN (ENSPPAG00000033007)	GRM4 (ENSPPAG00000043362)	ENSPPAG00000031034	SMIM29 (ENSPPAG00000031721)	NUDT3 (ENSPPAG00000031106)	ENSPPAG00000038030	ENSPPAG00000041795	PACSIN1 (ENSPPAG00000001207) ##22	SPDEF (ENSPPAG00000042558)	ILRUN (ENSPPAG00000040518)	ENSPPAG00000031072	SNRPC (ENSPPAG00000043871)	BLTP3A (ENSPPAG00000030877)	TAF11 (ENSPPAG00000041432)	ANKS1A (ENSPPAG00000000841)	TCP11 (ENSPPAG00000036085)	SCUBE3 (ENSPPAG00000043824) ##16	ZNF76 (ENSPPAG00000035130)	DEF6 (ENSPPAG00000033198)	PPARD (ENSPPAG00000038368)	ENSPPAG00000034967	ENSPPAG00000011712	TEAD3 (ENSPPAG00000015570)
Orangutan	MODERN SPECIES	19	PHF1 (ENSPPYG00000016498)	CUTA (ENSPPYG00000016499)	SYNGAP1 (ENSPPYG00000016500)	ZBTB9 (ENSPPYG00000016501)	BAK1 (ENSPPYG00000016502)	ITPR3 (ENSPPYG00000016504)	ENSPPYG00000016507	ENSPPYG00000016508	IP6K3 (ENSPPYG00000016509)	LEMD2 (ENSPPYG00000016510)	MLN (ENSPPYG00000016511)	GRM4 (ENSPPYG00000016512)	ENSPPYG00000016514	NUDT3 (ENSPPYG00000016515)	ENSPPYG00000016516	PACSIN1 (ENSPPYG00000016517) ##22	SPDEF (ENSPPYG00000016518)	ILRUN (ENSPPYG00000016519)	ENSPPYG00000032792	SNRPC (ENSPPYG00000017272)	BLTP3A (ENSPPYG00000016520)	TAF11 (ENSPPYG00000016521)	ANKS1A (ENSPPYG00000016522)	TCP11 (ENSPPYG00000016523)	SCUBE3 (ENSPPYG00000016524) ##16	ZNF76 (ENSPPYG00000016525)	DEF6 (ENSPPYG00000016526)	PPARD (ENSPPYG00000016527)	ENSPPYG00000016528	RPL10A (ENSPPYG00000016529)	TEAD3 (ENSPPYG00000016530)
Gibbon	MODERN SPECIES	10	ZBTB9 (ENSNLEG00000008348)	BAK1 (ENSNLEG00000028170)	ITPR3 (ENSNLEG00000008373)	UQCC2 (ENSNLEG00000035324)	IP6K3 (ENSNLEG00000008448)	ENSNLEG00000008472	MLN (ENSNLEG00000008478)	GRM4 (ENSNLEG00000008487)	ENSNLEG00000034916	HMGA1 (ENSNLEG00000031539)	SMIM29 (ENSNLEG00000032266)	ENSNLEG00000033901	NUDT3 (ENSNLEG00000029692)	ENSNLEG00000033500	ENSNLEG00000008336	PACSIN1 (ENSNLEG00000008343) ##22	SPDEF (ENSNLEG00000008374)	ENSNLEG00000035761	ENSNLEG00000031071	ENSNLEG00000027593	SNRPC (ENSNLEG00000034810)	BLTP3A (ENSNLEG00000008400)	TAF11 (ENSNLEG00000008457)	ANKS1A (ENSNLEG00000008483)	TCP11 (ENSNLEG00000008486)	SCUBE3 (ENSNLEG00000008527) ##16	ENSNLEG00000008581	DEF6 (ENSNLEG00000008604)	PPARD (ENSNLEG00000008621)	ENSNLEG00000008643	RPL10A (ENSNLEG00000008650)
Tarsier	MODERN SPECIES	5961						ITPR3 (ENSTSYG00000033238)	UQCC2 (ENSTSYG00000000510)	IP6K3 (ENSTSYG00000001526)	ENSTSYG00000014312	MLN (ENSTSYG00000008721)	GRM4 (ENSTSYG00000026349)	HMGA1 (ENSTSYG00000025919)	SMIM29 (ENSTSYG00000036429)	NUDT3 (ENSTSYG00000003608)	RPS10 (ENSTSYG00000032368)	PACSIN1 (ENSTSYG00000027582) ##22	SPDEF (ENSTSYG00000011393)	ILRUN (ENSTSYG00000007590)	SNRPC (ENSTSYG00000011216)
Euarchontoglires_A	ANCESTRAL SPECIES	6	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00440000034918.q.b.b	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b
Glires	ANCESTRAL SPECIES	5	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00440000034918.q.b.b	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b
Lagomorpha	ANCESTRAL SPECIES	2	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.k.a	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b	ENSGT00940000158771
Pika	MODERN SPECIES	805																ENSOPRG00000009315 ##22	SPDEF (ENSOPRG00000009328)	ILRUN (ENSOPRG00000009350)
Rabbit	MODERN SPECIES	3	KIFC1 (ENSOCUG00000010708)	PHF1 (ENSOCUG00000013680)	CUTA (ENSOCUG00000025968)	SYNGAP1 (ENSOCUG00000001039)	ZBTB9 (ENSOCUG00000025266)	BAK1 (ENSOCUG00000002556)	ITPR3 (ENSOCUG00000005766)	UQCC2 (ENSOCUG00000005802)	IP6K3 (ENSOCUG00000029364)	ENSOCUG00000022909	ENSOCUG00000013398	GRM4 (ENSOCUG00000002450)	ENSOCUG00000022537	NUDT3 (ENSOCUG00000013405)	ENSOCUG00000011373	PACSIN1 (ENSOCUG00000011332) ##22	ENSOCUG00000024862	ENSOCUG00000026668	BLTP3A (ENSOCUG00000002018)	TAF11 (ENSOCUG00000002023)	ANKS1A (ENSOCUG00000015569)	TCP11 (ENSOCUG00000015587)	SCUBE3 (ENSOCUG00000015611) ##16	ZNF76 (ENSOCUG00000015630)	DEF6 (ENSOCUG00000015644)	PPARD (ENSOCUG00000007732)	FKBP5 (ENSOCUG00000005513)	FANCE (ENSOCUG00000027207)	ENSOCUG00000004065	TEAD3 (ENSOCUG00000004072)	TULP1 (ENSOCUG00000015810)
Rodentia	ANCESTRAL SPECIES	6	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00440000034918.q.b.b	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b
Rodentia_A	ANCESTRAL SPECIES	8	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00440000034918.q.b.b	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.k.a.c.a	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b
Sciuridae	ANCESTRAL SPECIES	1	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.k.a.c.a	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b	ENSGT00940000158771
Marmotini	ANCESTRAL SPECIES	18	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00960000190479	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.k.a.c.a	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00960000190885	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b
Marmotini_b	ANCESTRAL SPECIES	8	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00960000190479	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.k.a.c.a	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00960000190885	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b
Arctic ground squirrel	MODERN SPECIES	25	ZBTB9 (ENSUPAG00010013935)	ENSUPAG00010013936	BAK1 (ENSUPAG00010013946)	ENSUPAG00010013955	ITPR3 (ENSUPAG00010013963)	UQCC2 (ENSUPAG00010014062)	IP6K3 (ENSUPAG00010014072)	LEMD2 (ENSUPAG00010014087)	MLN (ENSUPAG00010014101)	GRM4 (ENSUPAG00010014105)	HMGA1 (ENSUPAG00010014148)	ENSUPAG00010014209	ENSUPAG00010014229	NUDT3 (ENSUPAG00010014236)	RPS10 (ENSUPAG00010014271)	PACSIN1 (ENSUPAG00010014340) ##22	SPDEF (ENSUPAG00010014371)	ILRUN (ENSUPAG00010014410)	ENSUPAG00010014443	BLTP3A (ENSUPAG00010014463)	TAF11 (ENSUPAG00010014501)	ANKS1A (ENSUPAG00010014510)	TCP11 (ENSUPAG00010014741)	ENSUPAG00010014803	SCUBE3 (ENSUPAG00010014823) ##16	ZNF76 (ENSUPAG00010014957)	DEF6 (ENSUPAG00010015048)	PPARD (ENSUPAG00010015080)	FANCE (ENSUPAG00010015114)	RPL10A (ENSUPAG00010015209)	TEAD3 (ENSUPAG00010015261)
Squirrel	MODERN SPECIES	76	PHF1 (ENSSTOG00000002459)	CUTA (ENSSTOG00000002474)	SYNGAP1 (ENSSTOG00000002482)	ZBTB9 (ENSSTOG00000028789)	BAK1 (ENSSTOG00000002492)	ENSSTOG00000023969	ITPR3 (ENSSTOG00000000825)	UQCC2 (ENSSTOG00000000855)	IP6K3 (ENSSTOG00000021218)	LEMD2 (ENSSTOG00000000860)	GRM4 (ENSSTOG00000021639)	HMGA1 (ENSSTOG00000016559)	SMIM29 (ENSSTOG00000009996)	NUDT3 (ENSSTOG00000016560)	ENSSTOG00000013486	PACSIN1 (ENSSTOG00000024029) ##22	SPDEF (ENSSTOG00000028807)	ILRUN (ENSSTOG00000024680)	SNRPC (ENSSTOG00000013786)	BLTP3A (ENSSTOG00000026015)	TAF11 (ENSSTOG00000013562)	ANKS1A (ENSSTOG00000000241)	TCP11 (ENSSTOG00000000247)	SCUBE3 (ENSSTOG00000000248) ##16	ZNF76 (ENSSTOG00000000256)	DEF6 (ENSSTOG00000023306)	PPARD (ENSSTOG00000019649)	FANCE (ENSSTOG00000000259)	ENSSTOG00000023366	TEAD3 (ENSSTOG00000024296)	TULP1 (ENSSTOG00000015488)
Alpin marmot	MODERN SPECIES	20	SYNGAP1 (ENSMMMG00000024248)	ZBTB9 (ENSMMMG00000024268)	BAK1 (ENSMMMG00000024272)	ENSMMMG00000024274	ITPR3 (ENSMMMG00000024278)	UQCC2 (ENSMMMG00000024286)	IP6K3 (ENSMMMG00000024290)	LEMD2 (ENSMMMG00000024291)	MLN (ENSMMMG00000024293)	GRM4 (ENSMMMG00000024297)	HMGA1 (ENSMMMG00000024301)	SMIM29 (ENSMMMG00000024310)	ENSMMMG00000024313	NUDT3 (ENSMMMG00000024314)	RPS10 (ENSMMMG00000024315)	PACSIN1 (ENSMMMG00000024316) ##22	ILRUN (ENSMMMG00000024318)	ENSMMMG00000024319	BLTP3A (ENSMMMG00000024320)	ENSMMMG00000024321	ANKS1A (ENSMMMG00000024322)	TCP11 (ENSMMMG00000024323)	ENSMMMG00000024324	SCUBE3 (ENSMMMG00000024326) ##16	ZNF76 (ENSMMMG00000024327)	DEF6 (ENSMMMG00000024328)	PPARD (ENSMMMG00000024329)	FANCE (ENSMMMG00000024330)	RPL10A (ENSMMMG00000024331)	TEAD3 (ENSMMMG00000024332)	ENSMMMG00000024333
Eurasian red squirrel	MODERN SPECIES	16	ZBTB9 (ENSSVLG00005004305)	ENSSVLG00005004290	ENSSVLG00005010748	ENSSVLG00005010672	ENSSVLG00005010600	ITPR3 (ENSSVLG00005010544)	UQCC2 (ENSSVLG00005010471)	IP6K3 (ENSSVLG00005010422)	LEMD2 (ENSSVLG00005010376)	MLN (ENSSVLG00005010325)	GRM4 (ENSSVLG00005010040)	HMGA1 (ENSSVLG00005009928)	SMIM29 (ENSSVLG00005009875)	ENSSVLG00005009849	ENSSVLG00005009721	PACSIN1 (ENSSVLG00005009627) ##22	SPDEF (ENSSVLG00005009549)	ENSSVLG00005009521	ILRUN (ENSSVLG00005009437)	ENSSVLG00005009380	ENSSVLG00005009363	ENSSVLG00005009350	ENSSVLG00005009315	BLTP3A (ENSSVLG00005009259)	TAF11 (ENSSVLG00005009195)	ENSSVLG00005009159	ANKS1A (ENSSVLG00005008803)	TCP11 (ENSSVLG00005008661)	SCUBE3 (ENSSVLG00005008540) ##16	ZNF76 (ENSSVLG00005008484)	DEF6 (ENSSVLG00005008458)
Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00950000183180.a.b	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.q.b.b	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.k.a.c.a	ENSGT00730000110997.k.a.c.b.a	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b
Naked mole-rat female	MODERN SPECIES	4	ENSHGLG00000017591	ENSHGLG00000017582	ENSHGLG00000043131	ZBTB9 (ENSHGLG00000021359)	ENSHGLG00000017276	ITPR3 (ENSHGLG00000017265)	UQCC2 (ENSHGLG00000017241)	IP6K3 (ENSHGLG00000017231)	LEMD2 (ENSHGLG00000017560)	ENSHGLG00000043165	GRM4 (ENSHGLG00000017549)	ENSHGLG00000019318	ENSHGLG00000036849	NUDT3 (ENSHGLG00000019328)	RPS10 (ENSHGLG00000019210)	PACSIN1 (ENSHGLG00000034230) ##22	SPDEF (ENSHGLG00000016872)	ENSHGLG00000019438	ENSHGLG00000035791	SNRPC (ENSHGLG00000050686)	BLTP3A (ENSHGLG00000013152)	ENSHGLG00000016220	ANKS1A (ENSHGLG00000016179)	TCP11 (ENSHGLG00000015933)	SCUBE3 (ENSHGLG00000013799) ##16	ZNF76 (ENSHGLG00000013342)	DEF6 (ENSHGLG00000012785)	ENSHGLG00000012625	ENSHGLG00000029161	FANCE (ENSHGLG00000012417)	RPL10A (ENSHGLG00000012269)
Hystricomorpha_a	ANCESTRAL SPECIES	42	ENSGT00950000183180.a.b	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.q.b.b	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.k.a.c.a	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b	ENSGT00940000158771
Guinea pig	MODERN SPECIES	15	KIFC1 (ENSCPOG00000010632)	PHF1 (ENSCPOG00000008751)	CUTA (ENSCPOG00000008762)	SYNGAP1 (ENSCPOG00000002979)	ZBTB9 (ENSCPOG00000035179)	BAK1 (ENSCPOG00000000108)	ITPR3 (ENSCPOG00000014107)	UQCC2 (ENSCPOG00000034353)	IP6K3 (ENSCPOG00000013261)	LEMD2 (ENSCPOG00000007946)	MLN (ENSCPOG00000007949)	GRM4 (ENSCPOG00000000288)	HMGA1 (ENSCPOG00000031062)	NUDT3 (ENSCPOG00000003929)	RPS10 (ENSCPOG00000008613)	PACSIN1 (ENSCPOG00000012000) ##22	SPDEF (ENSCPOG00000020697)	ILRUN (ENSCPOG00000010706)	SNRPC (ENSCPOG00000008563)	BLTP3A (ENSCPOG00000015425)	TAF11 (ENSCPOG00000031905)	ANKS1A (ENSCPOG00000015430)	TCP11 (ENSCPOG00000011287)	SCUBE3 (ENSCPOG00000015286) ##16	ZNF76 (ENSCPOG00000007381)	DEF6 (ENSCPOG00000027364)	PPARD (ENSCPOG00000011385)	FANCE (ENSCPOG00000005569)	RPL10A (ENSCPOG00000005577)	TEAD3 (ENSCPOG00000005578)	TULP1 (ENSCPOG00000022079)
Hystricomorpha_b	ANCESTRAL SPECIES	3	ENSGT00940000161735	ENSGT00950000183180.a.b	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.q.b.b	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.k.a.d	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b	ENSGT00940000158771
Long-tailed chinchilla	MODERN SPECIES	144	KIFC1 (ENSCLAG00000007341)	PHF1 (ENSCLAG00000008684)	CUTA (ENSCLAG00000007315)	SYNGAP1 (ENSCLAG00000010661)	ZBTB9 (ENSCLAG00000011733)	BAK1 (ENSCLAG00000015649)	ITPR3 (ENSCLAG00000009348)	UQCC2 (ENSCLAG00000009455)	IP6K3 (ENSCLAG00000009756)	LEMD2 (ENSCLAG00000008317)	GRM4 (ENSCLAG00000010404)	HMGA1 (ENSCLAG00000010467)	SMIM29 (ENSCLAG00000011061)	NUDT3 (ENSCLAG00000009016)	RPS10 (ENSCLAG00000009803)	PACSIN1 (ENSCLAG00000011333) ##22	SPDEF (ENSCLAG00000008792)	ILRUN (ENSCLAG00000010022)	SNRPC (ENSCLAG00000016920)	BLTP3A (ENSCLAG00000016999)	TAF11 (ENSCLAG00000013347)	ANKS1A (ENSCLAG00000009134)	TCP11 (ENSCLAG00000011475)	SCUBE3 (ENSCLAG00000012780) ##16	ZNF76 (ENSCLAG00000007582)	DEF6 (ENSCLAG00000010815)	PPARD (ENSCLAG00000008716)	FANCE (ENSCLAG00000009867)	RPL10A (ENSCLAG00000013481)	TEAD3 (ENSCLAG00000012426)	ENSCLAG00000007729
Degu	MODERN SPECIES	46	KIFC1 (ENSODEG00000017215)	PHF1 (ENSODEG00000017098)	CUTA (ENSODEG00000017063)	SYNGAP1 (ENSODEG00000017205)	ZBTB9 (ENSODEG00000017442)	BAK1 (ENSODEG00000017211)	ITPR3 (ENSODEG00000017165)	ENSODEG00000017142	IP6K3 (ENSODEG00000016935)	LEMD2 (ENSODEG00000017492)	GRM4 (ENSODEG00000017030)	HMGA1 (ENSODEG00000017058)	SMIM29 (ENSODEG00000016986)	NUDT3 (ENSODEG00000017009)	ENSODEG00000017159	PACSIN1 (ENSODEG00000016899) ##22	SPDEF (ENSODEG00000017318)	ENSODEG00000017064	ILRUN (ENSODEG00000017302)	ENSODEG00000017080	BLTP3A (ENSODEG00000017715)	TAF11 (ENSODEG00000016983)	ANKS1A (ENSODEG00000017014)	ENSODEG00000016903	ENSODEG00000020378	SCUBE3 (ENSODEG00000017212) ##16	ENSODEG00000020389	ZNF76 (ENSODEG00000017147)	DEF6 (ENSODEG00000016832)	ENSODEG00000020393	PPARD (ENSODEG00000017223)
Rodentia_B	ANCESTRAL SPECIES	8	ENSGT00950000183180.a.b	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.q.b.b	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b	ENSGT00940000158771
Kangaroo rat	MODERN SPECIES	439											Grm4 (ENSDORG00000003502)	Hmga1b (ENSDORG00000025915)	Smim29 (ENSDORG00000028929)	Nudt3 (ENSDORG00000016311)	ENSDORG00000012060	Pacsin1 (ENSDORG00000016133) ##22	Spdef (ENSDORG00000016134)	Ilrun (ENSDORG00000026614)	ENSDORG00000005955	Uhrf1bp1 (ENSDORG00000009351)	ENSDORG00000009352	Anks1 (ENSDORG00000009353)	Tcp11 (ENSDORG00000009354)	Scube3 (ENSDORG00000003155) ##16	ENSDORG00000004835	Def6 (ENSDORG00000004837)	Ppard (ENSDORG00000009154)	Rpl10a (ENSDORG00000024646)	Tead3 (ENSDORG00000010798)	Tulp1 (ENSDORG00000000427)	Fkbp5 (ENSDORG00000007823)
Myomorpha	ANCESTRAL SPECIES	11	ENSGT00950000183180.a.b	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.q.b.b	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b	ENSGT00940000158771
Lesser Egyptian jerboa	MODERN SPECIES	41	Cuta (ENSJJAG00000021933)	Syngap1 (ENSJJAG00000023548)	Zbtb9 (ENSJJAG00000022199)	Bak1 (ENSJJAG00000005502)	ENSJJAG00000020274	Itpr3 (ENSJJAG00000023487)	Uqcc2 (ENSJJAG00000023718)	Ip6k3 (ENSJJAG00000022349)	ENSJJAG00000021141	Grm4 (ENSJJAG00000022598)	ENSJJAG00000019684	Smim29 (ENSJJAG00000017387)	ENSJJAG00000003056	Nudt3 (ENSJJAG00000001351)	Rps10 (ENSJJAG00000023024)	Pacsin1 (ENSJJAG00000019275) ##22	Spdef (ENSJJAG00000019742)	Ilrun (ENSJJAG00000018829)	Snrpc (ENSJJAG00000021741)	Uhrf1bp1 (ENSJJAG00000016778)	ENSJJAG00000022698	Anks1 (ENSJJAG00000022281)	ENSJJAG00000001270	ENSJJAG00000020856	Scube3 (ENSJJAG00000020942) ##16	Zfp523 (ENSJJAG00000006658)	Def6 (ENSJJAG00000020328)	Ppard (ENSJJAG00000004398)	ENSJJAG00000022676	ENSJJAG00000014896	Tead3 (ENSJJAG00000022931)
Muroidea	ANCESTRAL SPECIES	15	ENSGT00950000183180.a.b	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.q.b.b	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b	ENSGT00940000158771
Upper Galilee mountains blind mole rat	MODERN SPECIES	1087	Phf1 (ENSNGAG00000014246)	Cuta (ENSNGAG00000013238)	Syngap1 (ENSNGAG00000007288)	Zbtb9 (ENSNGAG00000017613)	Bak1 (ENSNGAG00000000971)	Ggnbp1 (ENSNGAG00000000329)	Itpr3 (ENSNGAG00000016614)	Uqcc2 (ENSNGAG00000013059)	Ip6k3 (ENSNGAG00000012474)	Lemd2 (ENSNGAG00000012052)	Grm4 (ENSNGAG00000010916)	ENSNGAG00000009189	Smim29 (ENSNGAG00000007902)	Nudt3 (ENSNGAG00000005815)	Rps10 (ENSNGAG00000021418)	Pacsin1 (ENSNGAG00000021382) ##22	Spdef (ENSNGAG00000021086)	Ilrun (ENSNGAG00000020755)	Snrpc (ENSNGAG00000019686)	Uhrf1bp1 (ENSNGAG00000018660)	Taf11 (ENSNGAG00000016936)	ENSNGAG00000015816	ENSNGAG00000014288	ENSNGAG00000015137	Scube3 (ENSNGAG00000013392) ##16	ENSNGAG00000012643	Def6 (ENSNGAG00000002294)	Ppard (ENSNGAG00000000295)	ENSNGAG00000018624	Rpl10a (ENSNGAG00000021389)	Tead3 (ENSNGAG00000014489)
Muroidea_A	ANCESTRAL SPECIES	8	ENSGT00950000183180.a.b	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.q.b.b.d	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b	ENSGT00940000158771
Murinae	ANCESTRAL SPECIES	18	ENSGT00950000183180.a.b	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.q.b.b.d	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b	ENSGT00940000158771
Mus	ANCESTRAL SPECIES	21	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.q.b.b.d	ENSGT00440000034918.q.b.b.c.b.b	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b	ENSGT00940000158771
Mus_A	ANCESTRAL SPECIES	10	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.q.b.b.d	ENSGT00440000034918.q.b.b.c.b.b	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b	ENSGT00940000158771
Mus_B	ANCESTRAL SPECIES	9	ENSGT00950000183180.a.b	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.q.b.b.c.b.b	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b	ENSGT00940000158771
Mus_C	ANCESTRAL SPECIES	9	ENSGT00950000183180.a.b	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.q.b.b.d	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b	ENSGT00940000158771
Steppe mouse	MODERN SPECIES	3360	Cuta (ENSMSIG00000004352)	Syngap1 (ENSMSIG00000004408)	Zbtb9 (ENSMSIG00000004746)	Ggnbp1 (ENSMSIG00000004764)	Bak1 (ENSMSIG00000004848)	Itpr3 (ENSMSIG00000004883)	Uqcc2 (ENSMSIG00000005071)	Ip6k3 (ENSMSIG00000005125)	Lemd2 (ENSMSIG00000005161)	Grm4 (ENSMSIG00000005245)	ENSMSIG00000005358	ENSMSIG00000005670	Smim29 (ENSMSIG00000005684)	ENSMSIG00000005759	ENSMSIG00000005933	Pacsin1 (ENSMSIG00000006080) ##22	Spdef (ENSMSIG00000006129)	Ilrun (ENSMSIG00000006231)	Snrpc (ENSMSIG00000006356)	Uhrf1bp1 (ENSMSIG00000006462)	Taf11 (ENSMSIG00000006531)	Anks1 (ENSMSIG00000006570)	Tcp11 (ENSMSIG00000007312)	Scube3 (ENSMSIG00000007550) ##16	Zfp523 (ENSMSIG00000007823)	Def6 (ENSMSIG00000007926)	ENSMSIG00000007962	Fance (ENSMSIG00000008000)	Rpl10a (ENSMSIG00000008210)	Tead3 (ENSMSIG00000008386)	Tulp1 (ENSMSIG00000008568)
spretus	MODERN SPECIES	8	Cuta (MGP_SPRETEiJ_G0022203)	Syngap1 (MGP_SPRETEiJ_G0022204)	Zbtb9 (MGP_SPRETEiJ_G0022205)	Ggnbp1 (MGP_SPRETEiJ_G0022206)	Bak1 (MGP_SPRETEiJ_G0022207)	Itpr3 (MGP_SPRETEiJ_G0022208)	Uqcc2 (MGP_SPRETEiJ_G0022209)	Ip6k3 (MGP_SPRETEiJ_G0022210)	Lemd2 (MGP_SPRETEiJ_G0022211)	Grm4 (MGP_SPRETEiJ_G0022212)	MGP_SPRETEiJ_G0022213	MGP_SPRETEiJ_G0022214	Smim29 (MGP_SPRETEiJ_G0022215)	Nudt3 (MGP_SPRETEiJ_G0022216)	Rps10 (MGP_SPRETEiJ_G0022217)	Pacsin1 (MGP_SPRETEiJ_G0022218) ##22	Spdef (MGP_SPRETEiJ_G0022219)	Ilrun (MGP_SPRETEiJ_G0022220)	MGP_SPRETEiJ_G0022221	Uhrf1bp1 (MGP_SPRETEiJ_G0022222)	Taf11 (MGP_SPRETEiJ_G0022223)	Anks1 (MGP_SPRETEiJ_G0022224)	Tcp11 (MGP_SPRETEiJ_G0022225)	Scube3 (MGP_SPRETEiJ_G0022226) ##16	Zfp523 (MGP_SPRETEiJ_G0022227)	Def6 (MGP_SPRETEiJ_G0022228)	MGP_SPRETEiJ_G0022229	MGP_SPRETEiJ_G0022230	Rpl10a (MGP_SPRETEiJ_G0022231)	Tead3 (MGP_SPRETEiJ_G0022232)	Tulp1 (MGP_SPRETEiJ_G0022233)
Mouse	MODERN SPECIES	8	Cuta (ENSMUSG00000024194)	Syngap1 (ENSMUSG00000067629)	Zbtb9 (ENSMUSG00000079605)	Ggnbp1 (ENSMUSG00000048731)	Bak1 (ENSMUSG00000057789)	Itpr3 (ENSMUSG00000042644)	Uqcc2 (ENSMUSG00000024208)	Ip6k3 (ENSMUSG00000024210)	Lemd2 (ENSMUSG00000044857)	Grm4 (ENSMUSG00000063239)	Hmga1 (ENSMUSG00000046711)	Smim29 (ENSMUSG00000062753)	Nudt3 (ENSMUSG00000024213)	Gm49804 (ENSMUSG00000117338)	Rps10 (ENSMUSG00000052146)	Pacsin1 (ENSMUSG00000040276) ##22	Spdef (ENSMUSG00000024215)	Ilrun (ENSMUSG00000056692)	Snrpc (ENSMUSG00000024217)	Uhrf1bp1 (ENSMUSG00000039512)	Taf11 (ENSMUSG00000024218)	Anks1 (ENSMUSG00000024219)	Tcp11 (ENSMUSG00000062859)	Scube3 (ENSMUSG00000038677) ##16	Zfp523 (ENSMUSG00000024220)	Def6 (ENSMUSG00000002257)	Ppard (ENSMUSG00000002250)	Fance (ENSMUSG00000007570)	Rpl10a (ENSMUSG00000037805)	Tead3 (ENSMUSG00000002249)	Tulp1 (ENSMUSG00000037446)
Ryukyu mouse	MODERN SPECIES	8	Cuta (MGP_CAROLIEiJ_G0021290)	Syngap1 (MGP_CAROLIEiJ_G0021291)	Zbtb9 (MGP_CAROLIEiJ_G0021292)	Ggnbp1 (MGP_CAROLIEiJ_G0021293)	Bak1 (MGP_CAROLIEiJ_G0021294)	Itpr3 (MGP_CAROLIEiJ_G0021295)	Uqcc2 (MGP_CAROLIEiJ_G0021296)	Ip6k3 (MGP_CAROLIEiJ_G0021297)	Lemd2 (MGP_CAROLIEiJ_G0021298)	Grm4 (MGP_CAROLIEiJ_G0021299)	MGP_CAROLIEiJ_G0021300	MGP_CAROLIEiJ_G0021301	Smim29 (MGP_CAROLIEiJ_G0021302)	Nudt3 (MGP_CAROLIEiJ_G0021303)	Rps10 (MGP_CAROLIEiJ_G0021304)	Pacsin1 (MGP_CAROLIEiJ_G0021305) ##22	Spdef (MGP_CAROLIEiJ_G0021306)	Ilrun (MGP_CAROLIEiJ_G0021307)	Snrpc (MGP_CAROLIEiJ_G0021308)	Uhrf1bp1 (MGP_CAROLIEiJ_G0021309)	Taf11 (MGP_CAROLIEiJ_G0021310)	Anks1 (MGP_CAROLIEiJ_G0021311)	Tcp11 (MGP_CAROLIEiJ_G0021312)	Scube3 (MGP_CAROLIEiJ_G0021313) ##16	Zfp523 (MGP_CAROLIEiJ_G0021314)	Def6 (MGP_CAROLIEiJ_G0021315)	Ppard (MGP_CAROLIEiJ_G0021316)	MGP_CAROLIEiJ_G0021317	Rpl10a (MGP_CAROLIEiJ_G0021318)	Tead3 (MGP_CAROLIEiJ_G0021319)	Tulp1 (MGP_CAROLIEiJ_G0021320)
Shrew mouse	MODERN SPECIES	13	Cuta (MGP_PahariEiJ_G0023608)	Syngap1 (MGP_PahariEiJ_G0023609)	Zbtb9 (MGP_PahariEiJ_G0023610)	Ggnbp1 (MGP_PahariEiJ_G0023611)	Bak1 (MGP_PahariEiJ_G0023612)	Itpr3 (MGP_PahariEiJ_G0023613)	Uqcc2 (MGP_PahariEiJ_G0023614)	Ip6k3 (MGP_PahariEiJ_G0023615)	Lemd2 (MGP_PahariEiJ_G0023616)	Grm4 (MGP_PahariEiJ_G0023617)	MGP_PahariEiJ_G0023618	MGP_PahariEiJ_G0023619	Smim29 (MGP_PahariEiJ_G0023620)	Nudt3 (MGP_PahariEiJ_G0023621)	Rps10 (MGP_PahariEiJ_G0023622)	Pacsin1 (MGP_PahariEiJ_G0023623) ##22	Spdef (MGP_PahariEiJ_G0023624)	MGP_PahariEiJ_G0023625	MGP_PahariEiJ_G0023626	Uhrf1bp1 (MGP_PahariEiJ_G0023627)	Taf11 (MGP_PahariEiJ_G0023628)	Anks1 (MGP_PahariEiJ_G0023629)	Tcp11 (MGP_PahariEiJ_G0023630)	Scube3 (MGP_PahariEiJ_G0023631) ##16	Zfp523 (MGP_PahariEiJ_G0023632)	Def6 (MGP_PahariEiJ_G0023633)	Ppard (MGP_PahariEiJ_G0023634)	MGP_PahariEiJ_G0023635	Rpl10a (MGP_PahariEiJ_G0023636)	Tead3 (MGP_PahariEiJ_G0023637)	Tulp1 (MGP_PahariEiJ_G0023638)
Rat	MODERN SPECIES	12	Cuta (ENSRNOG00000000481)	Syngap1 (ENSRNOG00000000483)	Zbtb9 (ENSRNOG00000026799)	Ggnbp1 (ENSRNOG00000000486)	Bak1 (ENSRNOG00000000485)	Itpr3 (ENSRNOG00000052795)	ENSRNOG00000067891	Uqcc2 (ENSRNOG00000025909)	Ip6k3 (ENSRNOG00000025883)	Mln (ENSRNOG00000042186)	Grm4 (ENSRNOG00000000487)	Hmga1 (ENSRNOG00000000488)	Smim29 (ENSRNOG00000054374)	Nudt3 (ENSRNOG00000061176)	Rps10l1 (ENSRNOG00000000490)	Pacsin1 (ENSRNOG00000054603) ##22	Spdef (ENSRNOG00000000491)	ENSRNOG00000058912	Ilrun (ENSRNOG00000038883)	Snrpc (ENSRNOG00000000493)	Bltp3a (ENSRNOG00000000495)	Taf11 (ENSRNOG00000024601)	Anks1a (ENSRNOG00000000498)	Tcp11 (ENSRNOG00000000499)	Scube3 (ENSRNOG00000000500) ##16	Zfp523 (ENSRNOG00000000501)	Def6 (ENSRNOG00000000502)	Ppard (ENSRNOG00000000503)	Fance (ENSRNOG00000000504)	Rpl10a (ENSRNOG00000000505)	Tead3 (ENSRNOG00000000506)
Cricetidae	ANCESTRAL SPECIES	9	ENSGT00950000183180.a.b	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.q.b.b.d	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b	ENSGT00940000158771
Cricetinae	ANCESTRAL SPECIES	24	ENSGT00950000183180.a.b	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.q.b.b.d	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b	ENSGT00940000158771
Golden Hamster	MODERN SPECIES	794	Phf1 (ENSMAUG00000002043)	Cuta (ENSMAUG00000016276)	Syngap1 (ENSMAUG00000021307)	Zbtb9 (ENSMAUG00000014578)	Bak1 (ENSMAUG00000018236)	Ggnbp1 (ENSMAUG00000020283)	Itpr3 (ENSMAUG00000019945)	ENSMAUG00000015225	Ip6k3 (ENSMAUG00000007919)	Lemd2 (ENSMAUG00000008930)	Grm4 (ENSMAUG00000014425)	ENSMAUG00000012619	Smim29 (ENSMAUG00000014272)	Nudt3 (ENSMAUG00000009585)	Rps10 (ENSMAUG00000010407)	Pacsin1 (ENSMAUG00000014331) ##22	Spdef (ENSMAUG00000007348)	Ilrun (ENSMAUG00000020257)	Uhrf1bp1 (ENSMAUG00000001812)	Taf11 (ENSMAUG00000012684)	Anks1 (ENSMAUG00000007655)	ENSMAUG00000013869	ENSMAUG00000020125	Scube3 (ENSMAUG00000008838) ##16	Zfp523 (ENSMAUG00000001011)	Def6 (ENSMAUG00000012255)	Ppard (ENSMAUG00000004049)	ENSMAUG00000016572	ENSMAUG00000020124	Tead3 (ENSMAUG00000013377)	Tulp1 (ENSMAUG00000019588)
Chinese hamster chok1gshd	MODERN SPECIES	303	Cuta (ENSCGRG00001018695)	Phf1 (ENSCGRG00001019832)	Syngap1 (ENSCGRG00001017977)	Zbtb9 (ENSCGRG00001012006)	Bak1 (ENSCGRG00001012370)	Ggnbp1 (ENSCGRG00001015484)	Itpr3 (ENSCGRG00001002765)	Uqcc2 (ENSCGRG00001023447)	Ip6k3 (ENSCGRG00001005691)	Lemd2 (ENSCGRG00001010388)	ENSCGRG00001015412	Hmga1 (ENSCGRG00001002340)	Smim29 (ENSCGRG00001011777)	Nudt3 (ENSCGRG00001014942)	ENSCGRG00001018710	Pacsin1 (ENSCGRG00001000381) ##22	Spdef (ENSCGRG00001013540)	Ilrun (ENSCGRG00001024033)	ENSCGRG00001001907	ENSCGRG00001009011	Uhrf1bp1 (ENSCGRG00001018079)	Taf11 (ENSCGRG00001000736)	Anks1 (ENSCGRG00001019540)	Tcp11 (ENSCGRG00001020725)	Scube3 (ENSCGRG00001016041) ##16	Zfp523 (ENSCGRG00001020582)	Def6 (ENSCGRG00001000149)	Ppard (ENSCGRG00001010044)	ENSCGRG00001012736	ENSCGRG00001023791	Tead3 (ENSCGRG00001011025)
Cricetidae_B	ANCESTRAL SPECIES	12	ENSGT00950000183180.a.b	ENSGT00390000017030.b.b	ENSGT00940000158438	ENSGT00940000162408	ENSGT01090000260100.A	ENSGT00390000006663	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.q.b.b.d	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997.l	ENSGT00600000084428.a	ENSGT00390000013228.e.a	ENSGT00940000155806	ENSGT00940000161869	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00390000008767.a.a.a.b	ENSGT00950000182956.b.b.b	ENSGT00940000158771
Prairie vole	MODERN SPECIES	352	Phf1 (ENSMOCG00000015733)	Cuta (ENSMOCG00000022966)	Syngap1 (ENSMOCG00000021904)	Zbtb9 (ENSMOCG00000018315)	Bak1 (ENSMOCG00000018013)	Ggnbp1 (ENSMOCG00000002798)	Itpr3 (ENSMOCG00000017037)	Uqcc2 (ENSMOCG00000020094)	Ip6k3 (ENSMOCG00000017166)	Lemd2 (ENSMOCG00000020451)	Grm4 (ENSMOCG00000018236)	Hmga1b (ENSMOCG00000021224)	Smim29 (ENSMOCG00000020775)	Nudt3 (ENSMOCG00000015183)	ENSMOCG00000010589	Pacsin1 (ENSMOCG00000016272) ##22	Spdef (ENSMOCG00000015432)	Ilrun (ENSMOCG00000021618)	Snrpc (ENSMOCG00000017609)	Uhrf1bp1 (ENSMOCG00000019070)	Taf11 (ENSMOCG00000014739)	ENSMOCG00000000600	Tcp11 (ENSMOCG00000020027)	Scube3 (ENSMOCG00000018773) ##16	ENSMOCG00000013791	Def6 (ENSMOCG00000012935)	Ppard (ENSMOCG00000021292)	ENSMOCG00000015462	ENSMOCG00000005661	Tead3 (ENSMOCG00000019095)	Tulp1 (ENSMOCG00000020188)
Northern American deer mouse	MODERN SPECIES	13	Phf1 (ENSPEMG00000008040)	Cuta (ENSPEMG00000015912)	Syngap1 (ENSPEMG00000016655)	Zbtb9 (ENSPEMG00000005547)	Bak1 (ENSPEMG00000026995)	Ggnbp1 (ENSPEMG00000017027)	Itpr3 (ENSPEMG00000010465)	Uqcc2 (ENSPEMG00000019242)	Ip6k3 (ENSPEMG00000010729)	Lemd2 (ENSPEMG00000029345)	Grm4 (ENSPEMG00000008393)	Hmga1b (ENSPEMG00000027659)	Smim29 (ENSPEMG00000013010)	Nudt3 (ENSPEMG00000029768)	Rps10 (ENSPEMG00000013126)	Pacsin1 (ENSPEMG00000015284) ##22	Spdef (ENSPEMG00000018293)	Ilrun (ENSPEMG00000012968)	Snrpc (ENSPEMG00000010773)	Uhrf1bp1 (ENSPEMG00000007001)	ENSPEMG00000025271	Anks1 (ENSPEMG00000013765)	Tcp11 (ENSPEMG00000007157)	Scube3 (ENSPEMG00000010616) ##16	Zfp523 (ENSPEMG00000003720)	Def6 (ENSPEMG00000012978)	Ppard (ENSPEMG00000006235)	Fance (ENSPEMG00000012868)	Rpl10a (ENSPEMG00000013589)	Tead3 (ENSPEMG00000012216)	Tulp1 (ENSPEMG00000015585)
Platypus	MODERN SPECIES	18	NFYA (ENSOANG00000044490)	ENSOANG00000042689	APOBEC2 (ENSOANG00000046384)	UNC5CL (ENSOANG00000037471)	ENSOANG00000040572	ITPR3 (ENSOANG00000011265)	UQCC2 (ENSOANG00000047713)	IP6K3 (ENSOANG00000011263)	ENSOANG00000036925	MLN (ENSOANG00000021641)	GRM4 (ENSOANG00000008364)	HMGA1 (ENSOANG00000032894)	SMIM29 (ENSOANG00000044876)	NUDT3 (ENSOANG00000000127)	RPS10 (ENSOANG00000012677)	PACSIN1 (ENSOANG00000041042) ##22	SPDEF (ENSOANG00000050028)	ILRUN (ENSOANG00000005979)	SNRPC (ENSOANG00000003405)	BLTP3A (ENSOANG00000049312)	ENSOANG00000013388	ANKS1A (ENSOANG00000038289)	ENSOANG00000008792	ENSOANG00000007040	CLPS (ENSOANG00000048366)	LHFPL5 (ENSOANG00000046683)	SRPK1 (ENSOANG00000000448)	ENSOANG00000009985	MAPK13 (ENSOANG00000042195)	BRPF3 (ENSOANG00000002329)	TBC1D22B (ENSOANG00000001766)
Sauria	ANCESTRAL SPECIES	24	ENSGT00940000156616	ENSGT00390000012980.b ##18	ENSGT00950000182815.b	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234549.a.a.a.a.a.b.a	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.d	ENSGT00940000159117
Archelosauria	ANCESTRAL SPECIES	22	ENSGT00940000156616	ENSGT00390000012980.b ##18	ENSGT00950000182815.b	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234549.a.a.a.a.a.b.a	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16	ENSGT00390000008767.c.b	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.d
Archosauria	ANCESTRAL SPECIES	23	ENSGT00940000156616	ENSGT00390000012980.b ##18	ENSGT00950000182815.b	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234549.a.a.a.a.a.b.a	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16	ENSGT00390000008767.c.b	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.d
Aves	ANCESTRAL SPECIES	25	ENSGT00390000006988	ENSGT00940000156616	ENSGT00390000012980.b ##18	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234549.a.a.a.a.a.b.a	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16	ENSGT00390000008767.d	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00940000159117
Neognathae	ANCESTRAL SPECIES	24	ENSGT00390000006988	ENSGT00940000156616	ENSGT00390000012980.b ##18	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234549.a.a.a.a.a.b.a	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16	ENSGT00390000008767.d	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00940000159117
Neognathae_b	ANCESTRAL SPECIES	24	ENSGT00390000006988	ENSGT00940000156616	ENSGT00390000012980.b ##18	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234549.a.a.a.a.a.b.a	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16	ENSGT00390000008767.d	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00940000159117
Neognathae_c	ANCESTRAL SPECIES	27	ENSGT00390000015714	ENSGT00390000006988	ENSGT00940000156616	ENSGT00390000012980.b ##18	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT01030000234549.a.a.a.a.a.b.a	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00980000202402	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16	ENSGT00390000008767.d	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00390000000705	ENSGT00940000159117	ENSGT00390000009166
Golden eagle	MODERN SPECIES	16	OARD1 (ENSACCG00020012645)	APOBEC2 (ENSACCG00020012676)	TSPO2 (ENSACCG00020012685) ##18	BAK1 (ENSACCG00020012707)	ITPR3 (ENSACCG00020013187)	UQCC2 (ENSACCG00020013440)	IP6K3 (ENSACCG00020013460)	LEMD2 (ENSACCG00020013479)	ENSACCG00020013499	ENSACCG00020013519	GRM4 (ENSACCG00020013536)	HMGA1 (ENSACCG00020013561)	ENSACCG00020013578	NUDT3 (ENSACCG00020013597)	RPS10 (ENSACCG00020013618)	PACSIN1 (ENSACCG00020013637) ##22	SPDEF (ENSACCG00020013661)	ILRUN (ENSACCG00020013698)	SNRPC (ENSACCG00020013719)	BLTP3A (ENSACCG00020013757)	ENSACCG00020013787	ANKS1A (ENSACCG00020014223)	ENSACCG00020014760	SCUBE3 (ENSACCG00020014785) ##16	RPL10A (ENSACCG00020014808)	ZNF76 (ENSACCG00020014824)	DEF6 (ENSACCG00020014845)	PPARD (ENSACCG00020014867)	FANCE (ENSACCG00020014883)	ENSACCG00020014912	MICAL1 (ENSACCG00020014962)
Kakapo	MODERN SPECIES	30	TREM2 (ENSSHBG00005014084)	NFYA (ENSSHBG00005014091)	OARD1 (ENSSHBG00005014103)	APOBEC2 (ENSSHBG00005014113)	TSPO2 (ENSSHBG00005014125) ##18	BAK1 (ENSSHBG00005014138)	ITPR3 (ENSSHBG00005014174)	UQCC2 (ENSSHBG00005014215)	IP6K3 (ENSSHBG00005014223)	LEMD2 (ENSSHBG00005014246)	ENSSHBG00005014478	GRM4 (ENSSHBG00005014485)	NUDT3 (ENSSHBG00005014490)	SMIM29 (ENSSHBG00005014502)	RPS10 (ENSSHBG00005014508)	PACSIN1 (ENSSHBG00005014517) ##22	SPDEF (ENSSHBG00005014525)	ILRUN (ENSSHBG00005014536)	SNRPC (ENSSHBG00005014545)	ENSSHBG00005014557	ENSSHBG00005014571	INKA2 (ENSSHBG00005014581)	DDX20 (ENSSHBG00005014590)	KCND3 (ENSSHBG00005014608)	CTTNBP2NL (ENSSHBG00005014616)	WNT2B (ENSSHBG00005014626)	ST7L (ENSSHBG00005014637)	CAPZA1 (ENSSHBG00005014643)	MOV10 (ENSSHBG00005014656)	RHOC (ENSSHBG00005014686)	PPM1J (ENSSHBG00005014694)
Passeriformes	ANCESTRAL SPECIES	21	ENSGT00390000006988	ENSGT00940000156616	ENSGT00390000012980.b ##18	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234549.a.a.a.a.a.b.a	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000153185.a.a.b ##16	ENSGT00390000008767.d	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00940000159117	ENSGT00390000009166
Passeriformes_d	ANCESTRAL SPECIES	21	ENSGT00940000156616	ENSGT00390000012980.b ##18	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887.j	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234549.a.a.a.a.a.b.a	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00980000202402	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000153185.a.a.b ##16	ENSGT00390000008767.d	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00940000159117	ENSGT00390000009166
Flycatcher	MODERN SPECIES	18	ENSFALG00000003903 ##18	BAK1 (ENSFALG00000003897)	ITPR3 (ENSFALG00000003884)	ENSFALG00000025988	IP6K3 (ENSFALG00000003865)	LEMD2 (ENSFALG00000003858)	ENSFALG00000003856	ENSFALG00000003843	ENSFALG00000003816	ENSFALG00000025014	ENSFALG00000026051	HMGA1 (ENSFALG00000003795)	ENSFALG00000028104	NUDT3 (ENSFALG00000003788)	RPS10 (ENSFALG00000025571)	PACSIN1 (ENSFALG00000003773) ##22	SPDEF (ENSFALG00000027495)	ILRUN (ENSFALG00000023018)	ENSFALG00000028356	BLTP3A (ENSFALG00000003722)	ENSFALG00000024921	ANKS1A (ENSFALG00000003711)	SCUBE3 (ENSFALG00000003706) ##16	ENSFALG00000003701	ZNF76 (ENSFALG00000003698)	DEF6 (ENSFALG00000003694)	PPARD (ENSFALG00000003689)	ENSFALG00000024512	ENSFALG00000003677	ENSFALG00000003653	ENSFALG00000003639
Passeriformes_g	ANCESTRAL SPECIES	24	ENSGT00940000156616	ENSGT00390000012980.b ##18	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887.j	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234549.a.a.a.a.a.b.a	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00980000202402	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000153185.a.a.b ##16	ENSGT00390000008767.d	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00940000159117	ENSGT00390000009166
Passeroidea	ANCESTRAL SPECIES	24	ENSGT00940000156616	ENSGT00390000012980.b ##18	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887.j	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234549.a.a.a.a.a.b.a	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00980000202402	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000153185.a.a.b ##16	ENSGT00390000008767.d	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00940000159117	ENSGT00390000009166
Common canary	MODERN SPECIES	62	OARD1 (ENSSCAG00000016891)	APOBEC2 (ENSSCAG00000016889)	TSPO2 (ENSSCAG00000016888) ##18	BAK1 (ENSSCAG00000016887)	ITPR3 (ENSSCAG00000016393)	UQCC2 (ENSSCAG00000016021)	IP6K3 (ENSSCAG00000016016)	LEMD2 (ENSSCAG00000016012)	MLN (ENSSCAG00000016010)	ENSSCAG00000015998	GRM4 (ENSSCAG00000015992)	HMGA1 (ENSSCAG00000015991)	ENSSCAG00000015990	NUDT3 (ENSSCAG00000015988)	RPS10 (ENSSCAG00000015987)	PACSIN1 (ENSSCAG00000015981) ##22	SPDEF (ENSSCAG00000015977)	ILRUN (ENSSCAG00000015976)	SNRPC (ENSSCAG00000015974)	BLTP3A (ENSSCAG00000015969)	ENSSCAG00000015962	ANKS1A (ENSSCAG00000015899)	SCUBE3 (ENSSCAG00000015844) ##16	ENSSCAG00000015837	RPL10A (ENSSCAG00000015835)	ZNF76 (ENSSCAG00000015828)	DEF6 (ENSSCAG00000015827)	PPARD (ENSSCAG00000015824)	ENSSCAG00000015820	ENSSCAG00000015815	ENSSCAG00000015810
Zebra finch	MODERN SPECIES	19	NFYA (ENSTGUG00000001832)	OARD1 (ENSTGUG00000001830)	APOBEC2 (ENSTGUG00000018533)	TSPO2 (ENSTGUG00000021855) ##18	ITPR3 (ENSTGUG00000001798)	UQCC2 (ENSTGUG00000001797)	IP6K3 (ENSTGUG00000019985)	LEMD2 (ENSTGUG00000001795)	ENSTGUG00000026122	ENSTGUG00000001791	GRM4 (ENSTGUG00000021157)	ENSTGUG00000022185	NUDT3 (ENSTGUG00000025458)	RPS10 (ENSTGUG00000001782)	SPDEF (ENSTGUG00000001781)	PACSIN1 (ENSTGUG00000013694) ##22	ILRUN (ENSTGUG00000001777)	SNRPC (ENSTGUG00000001773)	BLTP3A (ENSTGUG00000001768)	TAF11 (ENSTGUG00000001766)	ANKS1A (ENSTGUG00000001756)	SCUBE3 (ENSTGUG00000001750) ##16	RPL10A (ENSTGUG00000001749)	ZNF76 (ENSTGUG00000001745)	DEF6 (ENSTGUG00000001738)	PPARD (ENSTGUG00000001735)	ENSTGUG00000001733	FANCE (ENSTGUG00000001732)	ENSTGUG00000027374	MICAL1 (ENSTGUG00000001721)	SMPD2 (ENSTGUG00000001713)
Medium ground finch	MODERN SPECIES	215	ENSGFOG00000012479	NFYA (ENSGFOG00000012476)	OARD1 (ENSGFOG00000012469)	APOBEC2 (ENSGFOG00000012466)	TSPO2 (ENSGFOG00000012449) ##18	BAK1 (ENSGFOG00000012443)	ITPR3 (ENSGFOG00000012137)	IP6K3 (ENSGFOG00000012101)	LEMD2 (ENSGFOG00000012096)	ENSGFOG00000012092	ENSGFOG00000012087	GRM4 (ENSGFOG00000012082)	ENSGFOG00000012076	NUDT3 (ENSGFOG00000012072)	ENSGFOG00000012068	PACSIN1 (ENSGFOG00000012062) ##22	ILRUN (ENSGFOG00000012059)	SNRPC (ENSGFOG00000012057)	BLTP3A (ENSGFOG00000012052)	ANKS1A (ENSGFOG00000010716)	SCUBE3 (ENSGFOG00000009691) ##16	RPL10A (ENSGFOG00000009647)	ENSGFOG00000009644	ZNF76 (ENSGFOG00000009638)	ENSGFOG00000009636	DEF6 (ENSGFOG00000009628)	PPARD (ENSGFOG00000009620)	ENSGFOG00000009611	FANCE (ENSGFOG00000009601)	USP49 (ENSGFOG00000009579)	ENSGFOG00000009573
Great tit	MODERN SPECIES	19	NFYA (ENSPMJG00000016250)	OARD1 (ENSPMJG00000016249)	APOBEC2 (ENSPMJG00000016248)	BAK1 (ENSPMJG00000016247)	ENSPMJG00000016246	ITPR3 (ENSPMJG00000012531)	UQCC2 (ENSPMJG00000012530)	IP6K3 (ENSPMJG00000012529)	LEMD2 (ENSPMJG00000012528)	ENSPMJG00000012527	ENSPMJG00000012526	GRM4 (ENSPMJG00000012525)	HMGA1 (ENSPMJG00000012524)	SMIM29 (ENSPMJG00000012523)	NUDT3 (ENSPMJG00000012522)	PACSIN1 (ENSPMJG00000012521) ##22	SPDEF (ENSPMJG00000012520)	RPS10 (ENSPMJG00000012519)	ILRUN (ENSPMJG00000012517)	SNRPC (ENSPMJG00000012516)	BLTP3A (ENSPMJG00000012515)	ENSPMJG00000012514	ANKS1A (ENSPMJG00000012513)	SCUBE3 (ENSPMJG00000012391) ##16	RPL10A (ENSPMJG00000012390)	ENSPMJG00000012389	ENSPMJG00000012388	DEF6 (ENSPMJG00000012387)	PPARD (ENSPMJG00000012386)	ENSPMJG00000012385	FANCE (ENSPMJG00000012384)
Galloanserae	ANCESTRAL SPECIES	28	ENSGT00390000006988	ENSGT00940000156616	ENSGT00390000012980.b ##18	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234549.a.a.a.a.a.b.a	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16	ENSGT00390000008767.d	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00940000159117
Anatidae	ANCESTRAL SPECIES	38	ENSGT00390000015714	ENSGT00390000006988	ENSGT00940000156616	ENSGT00390000012980.b ##18	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887.g	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234549.a.a.a.a.a.b.a	ENSGT01030000234648.a.b.a.a.a	ENSGT01030000235038	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16	ENSGT00390000008767.d	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00940000159117
Pink-footed goose	MODERN SPECIES	237	NFYA (ENSABRG00000011138)	OARD1 (ENSABRG00000011155)	APOBEC2 (ENSABRG00000011171)	TSPO2 (ENSABRG00000011186) ##18	BAK1 (ENSABRG00000011204)	ITPR3 (ENSABRG00000011227)	UQCC2 (ENSABRG00000011317)	IP6K3 (ENSABRG00000011341)	LEMD2 (ENSABRG00000011346)	MLN (ENSABRG00000011350)	ENSABRG00000011362	GRM4 (ENSABRG00000011490)	ENSABRG00000011498	NUDT3 (ENSABRG00000011504)	RPS10 (ENSABRG00000011511)	PACSIN1 (ENSABRG00000011521) ##22	SPDEF (ENSABRG00000011532)	ILRUN (ENSABRG00000011537)	ENSABRG00000011549	BLTP3A (ENSABRG00000011558)	ENSABRG00000011563	ANKS1A (ENSABRG00000011633)	ENSABRG00000012693	SCUBE3 (ENSABRG00000012752) ##16	RPL10A (ENSABRG00000013328)	ZNF76 (ENSABRG00000013332)	DEF6 (ENSABRG00000013347)	PPARD (ENSABRG00000013359)	ENSABRG00000013381	FANCE (ENSABRG00000013418)	MICAL1 (ENSABRG00000013423)
Duck	MODERN SPECIES	18	ENSAPLG00000016298	LRIF1 (ENSAPLG00000001746)	CEPT1 (ENSAPLG00000002219)	DRAM2 (ENSAPLG00000001918)	NFYA (ENSAPLG00000002694)	OARD1 (ENSAPLG00000002869)	APOBEC2 (ENSAPLG00000002895)	TSPO2 (ENSAPLG00000002897) ##18	BAK1 (ENSAPLG00000003058)	ITPR3 (ENSAPLG00000003078)	LEMD2 (ENSAPLG00000028691)	ENSAPLG00000005325	ENSAPLG00000005514	NUDT3 (ENSAPLG00000026621)	RPS10 (ENSAPLG00000008728)	PACSIN1 (ENSAPLG00000008350) ##22	SPDEF (ENSAPLG00000017680)	ILRUN (ENSAPLG00000019995)	SNRPC (ENSAPLG00000023212)	BLTP3A (ENSAPLG00000007589)	ANKS1A (ENSAPLG00000006934)	ENSAPLG00000023437	ENSAPLG00000006673	SOX13 (ENSAPLG00000016687)	ETNK2 (ENSAPLG00000012663)	REN (ENSAPLG00000012376)	GOLT1A (ENSAPLG00000027994)	ENSAPLG00000030874	PIK3C2B (ENSAPLG00000023158)	MDM4 (ENSAPLG00000012694)	LRRN2 (ENSAPLG00000013110)
Phasianidae	ANCESTRAL SPECIES	22	ENSGT00390000006988	ENSGT00940000156616	ENSGT00390000012980.b ##18	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234549.a.a.a.a.a.b.a	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16	ENSGT00390000008767.d	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000007725.A.b
Phasianidae_b	ANCESTRAL SPECIES	22	ENSGT00390000006988	ENSGT00940000156616	ENSGT00390000012980.b ##18	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234549.a.a.a.a.a.b.a	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792.d	ENSGT00940000153185.a.a.b ##16	ENSGT00390000008767.d	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000007725.A.b
Chicken	MODERN SPECIES	18	APOBEC2 (ENSGALG00010027623)	TSPO2 (ENSGALG00010027621) ##18	BAK1 (ENSGALG00010027612)	ENSGALG00010027604	ITPR3 (ENSGALG00010027594)	C26H6ORF125 (ENSGALG00010027579)	IP6K3 (ENSGALG00010027265)	LEMD2 (ENSGALG00010027260)	MLN (ENSGALG00010027373)	OPN1MSW (ENSGALG00010027226)	GRM4 (ENSGALG00010024446)	HMGA1 (ENSGALG00010026300)	SMIM29 (ENSGALG00010026192)	NUDT3 (ENSGALG00010026184)	RPS10 (ENSGALG00010026148)	PACSIN1 (ENSGALG00010026124) ##22	SPDEF (ENSGALG00010026109)	C6orf106 (ENSGALG00010026094)	SNRPC (ENSGALG00010026088)	BLTP3A (ENSGALG00010026068)	TAF11 (ENSGALG00010026051)	ANKS1A (ENSGALG00010026001)	ENSGALG00010025941	SCUBE3 (ENSGALG00010025917) ##16	RPL10A (ENSGALG00010025904)	ZNF76 (ENSGALG00010025887)	DEF6 (ENSGALG00010025847)	PPARD (ENSGALG00010027545)	ENSGALG00010027527	FANCE (ENSGALG00010027520)	NGF (ENSGALG00010025423)
Turkey	MODERN SPECIES	20	FANCE (ENSMGAG00000005885)	ZNF76 (ENSMGAG00000005673)	ENSMGAG00000005654	PPARD (ENSMGAG00000005631)	ENSMGAG00000005735 ##16	ENSMGAG00000005706	ENSMGAG00000019502	ENSMGAG00000005909	ENSMGAG00000018669	ENSMGAG00000020028	ENSMGAG00000005929	ENSMGAG00000006015	ENSMGAG00000005996	ENSMGAG00000006054	ILRUN (ENSMGAG00000006067)	ENSMGAG00000002732 ##22	ENSMGAG00000002725	ENSMGAG00000002756	ENSMGAG00000002783	ENSMGAG00000002804	ENSMGAG00000018879	ENSMGAG00000006072	ENSMGAG00000019397	ENSMGAG00000006145	ENSMGAG00000009787	UQCC2 (ENSMGAG00000018544)	ENSMGAG00000009872	LEMD2 (ENSMGAG00000005990)	ENSMGAG00000020491	ENSMGAG00000010175 ##18	ENSMGAG00000009782
Japanese quail	MODERN SPECIES	18	OARD1 (ENSCJPG00005018932)	APOBEC2 (ENSCJPG00005018931)	TSPO2 (ENSCJPG00005018930) ##18	BAK1 (ENSCJPG00005018929)	ITPR3 (ENSCJPG00005018010)	UQCC2 (ENSCJPG00005018009)	IP6K3 (ENSCJPG00005018008)	LEMD2 (ENSCJPG00005018007)	MLN (ENSCJPG00005018006)	ENSCJPG00005018003	GRM4 (ENSCJPG00005017950)	ENSCJPG00005017949	SMIM29 (ENSCJPG00005017948)	NUDT3 (ENSCJPG00005017947)	RPS10 (ENSCJPG00005017946)	PACSIN1 (ENSCJPG00005017903) ##22	SPDEF (ENSCJPG00005017897)	ILRUN (ENSCJPG00005017896)	BLTP3A (ENSCJPG00005017862)	ENSCJPG00005017861	ANKS1A (ENSCJPG00005017800)	SCUBE3 (ENSCJPG00005017799) ##16	RPL10A (ENSCJPG00005017798)	ENSCJPG00005017797	DEF6 (ENSCJPG00005017796)	PPARD (ENSCJPG00005017795)	FANCE (ENSCJPG00005017794)	NGF (ENSCJPG00005017793)	TSPAN2 (ENSCJPG00005017792)	TSHB (ENSCJPG00005017791)	ENSCJPG00005017774
African ostrich	MODERN SPECIES	505		ENSSCUG00000005003	TREM2 (ENSSCUG00000005005)	NFYA (ENSSCUG00000005007)	OARD1 (ENSSCUG00000005008)	APOBEC2 (ENSSCUG00000005011)	BAK1 (ENSSCUG00000005012)	ITPR3 (ENSSCUG00000005311)	ENSSCUG00000005955	IP6K3 (ENSSCUG00000005956)	ENSSCUG00000005959	ENSSCUG00000005961	GRM4 (ENSSCUG00000005965)	NUDT3 (ENSSCUG00000005966)	RPS10 (ENSSCUG00000005968)	PACSIN1 (ENSSCUG00000005970) ##22	ILRUN (ENSSCUG00000005972)	ENSSCUG00000005973	BLTP3A (ENSSCUG00000005976)	ENSSCUG00000005990	ANKS1A (ENSSCUG00000006006)	ENSSCUG00000006009	RPL10A (ENSSCUG00000006016)	ZNF76 (ENSSCUG00000006018)	PPARD (ENSSCUG00000006020)	ENSSCUG00000006021	FANCE (ENSSCUG00000006023)
Australian saltwater crocodile	MODERN SPECIES	53	OARD1 (ENSCPRG00005011499)	APOBEC2 (ENSCPRG00005011503)	TSPO2 (ENSCPRG00005011511) ##18	UNC5CL (ENSCPRG00005011514)	BAK1 (ENSCPRG00005011519)	ITPR3 (ENSCPRG00005011760)	UQCC2 (ENSCPRG00005014099)	IP6K3 (ENSCPRG00005014108)	LEMD2 (ENSCPRG00005014114)	MLN (ENSCPRG00005014118)	ENSCPRG00005014124	HMGA1 (ENSCPRG00005014137)	SMIM29 (ENSCPRG00005014138)	NUDT3 (ENSCPRG00005014140)	ENSCPRG00005014145	PACSIN1 (ENSCPRG00005014146) ##22	SPDEF (ENSCPRG00005014151)	ILRUN (ENSCPRG00005014159)	SNRPC (ENSCPRG00005014161)	BLTP3A (ENSCPRG00005014167)	ENSCPRG00005014174	ANKS1A (ENSCPRG00005014190)	ENSCPRG00005014273	SCUBE3 (ENSCPRG00005014284) ##16	ENSCPRG00005014319	ZNF76 (ENSCPRG00005014331)	DEF6 (ENSCPRG00005014336)	PPARD (ENSCPRG00005014343)	ENSCPRG00005014350	FANCE (ENSCPRG00005014369)	ENSCPRG00005014386
Cryptodira	ANCESTRAL SPECIES	27	ENSGT00390000006988	ENSGT00940000156616	ENSGT00390000012980.b ##18	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234549.a.a.a.a.a.b.a	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16	ENSGT00390000008767.d	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00940000159117
Chinese turtle	DUPLICATION
Chinese turtle	MODERN SPECIES	500	SUPT7L (ENSPSIG00000004063)	ENSPSIG00000004081	ENSPSIG00000004114	FBXO41 (ENSPSIG00000004135)	CCT7 (ENSPSIG00000004200)	PRADC1 (ENSPSIG00000004465)	SMYD5 (ENSPSIG00000004545)	ENSPSIG00000004664	ENSPSIG00000004684	HMGA1 (ENSPSIG00000004687)	SMIM29 (ENSPSIG00000004692)	ENSPSIG00000004791	NUDT3 (ENSPSIG00000004794)	RPS10 (ENSPSIG00000004818)	ENSPSIG00000004825 ##22	ENSPSIG00000004835 ##22	SPDEF (ENSPSIG00000004860)	ILRUN (ENSPSIG00000004872)	SNRPC (ENSPSIG00000004876)	BLTP3A (ENSPSIG00000004890)	ENSPSIG00000005038	ANKS1A (ENSPSIG00000005058)	ENSPSIG00000005342	SCUBE3 (ENSPSIG00000005357) ##16	RPL10A (ENSPSIG00000005634)	ZNF76 (ENSPSIG00000005652)	DEF6 (ENSPSIG00000005828)	PPARD (ENSPSIG00000005889)	FANCE (ENSPSIG00000005927)	ENSPSIG00000005941	MICAL1 (ENSPSIG00000005964)
Chinese turtle	MODERN SPECIES	500	SLC4A1AP (ENSPSIG00000004013)	SUPT7L (ENSPSIG00000004063)	ENSPSIG00000004081	ENSPSIG00000004114	FBXO41 (ENSPSIG00000004135)	CCT7 (ENSPSIG00000004200)	PRADC1 (ENSPSIG00000004465)	SMYD5 (ENSPSIG00000004545)	ENSPSIG00000004664	ENSPSIG00000004684	HMGA1 (ENSPSIG00000004687)	SMIM29 (ENSPSIG00000004692)	ENSPSIG00000004791	NUDT3 (ENSPSIG00000004794)	RPS10 (ENSPSIG00000004818)	ENSPSIG00000004825 ##22	ENSPSIG00000004835 ##22	SPDEF (ENSPSIG00000004860)	ILRUN (ENSPSIG00000004872)	SNRPC (ENSPSIG00000004876)	BLTP3A (ENSPSIG00000004890)	ENSPSIG00000005038	ANKS1A (ENSPSIG00000005058)	ENSPSIG00000005342	SCUBE3 (ENSPSIG00000005357) ##16	RPL10A (ENSPSIG00000005634)	ZNF76 (ENSPSIG00000005652)	DEF6 (ENSPSIG00000005828)	PPARD (ENSPSIG00000005889)	FANCE (ENSPSIG00000005927)	ENSPSIG00000005941
Testudinoidea	ANCESTRAL SPECIES	22	ENSGT00390000006988	ENSGT00940000156616	ENSGT00390000012980.b ##18	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234549.a.a.a.a.a.b.a	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r.cb	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16	ENSGT00390000008767.c.b	ENSGT00940000160911.e	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00940000159117
Emydidae	ANCESTRAL SPECIES	25	ENSGT00390000015714	ENSGT00390000006988	ENSGT00940000156616	ENSGT00390000012980.b ##18	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234549.a.a.a.a.a.b.a	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00940000157882	ENSGT00440000034918.r.bb	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16	ENSGT00390000008767.c.a	ENSGT00940000160911.e	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00940000159117
Three-toed box turtle	MODERN SPECIES	292														NUDT3 (ENSTMTG00000011633)	ENSTMTG00000011651	PACSIN1 (ENSTMTG00000011668) ##22	SPDEF (ENSTMTG00000011684)	ILRUN (ENSTMTG00000011698)	SNRPC (ENSTMTG00000011719)	BLTP3A (ENSTMTG00000011727)	ENSTMTG00000011773	ANKS1A (ENSTMTG00000011921)	ENSTMTG00000013514	SCUBE3 (ENSTMTG00000013641) ##16	ENSTMTG00000014268	ZNF76 (ENSTMTG00000014283)	DEF6 (ENSTMTG00000014316)	PPARD (ENSTMTG00000014341)	FANCE (ENSTMTG00000014360)	MICAL1 (ENSTMTG00000014404)	SMPD2 (ENSTMTG00000014566)
painted turtle	MODERN SPECIES	914											ENSCPBG00000027128	ENSCPBG00000027130	GRM4 (ENSCPBG00000027131)	ENSCPBG00000027133	ENSCPBG00000027135	PACSIN1 (ENSCPBG00000027137) ##22	SPDEF (ENSCPBG00000027138)	ILRUN (ENSCPBG00000027140)	SNRPC (ENSCPBG00000027142)	BLTP3A (ENSCPBG00000027144)	ENSCPBG00000027153	ANKS1A (ENSCPBG00000027158)	ENSCPBG00000027163	SCUBE3 (ENSCPBG00000027165) ##16	ENSCPBG00000027167	TBC1D22B (ENSCPBG00000027169)
Testudinidae	ANCESTRAL SPECIES	26	ENSGT00390000006988	ENSGT00940000156616	ENSGT00390000012980.b ##18	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT01030000236145	ENSGT01030000234549.a.a.a.a.a.b.a	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r.cb	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16	ENSGT00390000008767.c.b	ENSGT00940000160911.e	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00940000159117
Goode s thornscrub tortoise	MODERN SPECIES	18	TSPO2 (ENSGEVG00005003523) ##18	BAK1 (ENSGEVG00005003511)	ITPR3 (ENSGEVG00005003357)	UQCC2 (ENSGEVG00005003169)	IP6K3 (ENSGEVG00005003153)	LEMD2 (ENSGEVG00005003130)	ENSGEVG00005003122	ENSGEVG00005003110	ENSGEVG00005003101	GRM4 (ENSGEVG00005003070)	HMGA1 (ENSGEVG00005003047)	SMIM29 (ENSGEVG00005003030)	ENSGEVG00005003018	NUDT3 (ENSGEVG00005003006)	ENSGEVG00005002990	PACSIN1 (ENSGEVG00005002971) ##22	SPDEF (ENSGEVG00005002951)	ILRUN (ENSGEVG00005002910)	SNRPC (ENSGEVG00005002884)	BLTP3A (ENSGEVG00005002842)	ENSGEVG00005002812	ANKS1A (ENSGEVG00005002406)	ENSGEVG00005002149	SCUBE3 (ENSGEVG00005001903) ##16	ENSGEVG00005001777	ZNF76 (ENSGEVG00005001748)	DEF6 (ENSGEVG00005001726)	PPARD (ENSGEVG00005001704)	ENSGEVG00005001677	FANCE (ENSGEVG00005001655)	ENSGEVG00005001625
Abingdon island giant tortoise	MODERN SPECIES	1708											HMGA1 (ENSCABG00000006260)	SMIM29 (ENSCABG00000006263)	ENSCABG00000006265	NUDT3 (ENSCABG00000006268)	RPS10 (ENSCABG00000006269)	PACSIN1 (ENSCABG00000006275) ##22	SPDEF (ENSCABG00000006333)	ILRUN (ENSCABG00000006343)	SNRPC (ENSCABG00000006345)	ENSCABG00000006348	ENSCABG00000006351	ENSCABG00000006355	ENSCABG00000006360	ENSCABG00000006361	VRK2 (ENSCABG00000006363)	FANCL (ENSCABG00000006365)
Lepidosauria	ANCESTRAL SPECIES	56	ENSGT00940000156616	ENSGT00390000012980.b ##18	ENSGT00950000182815.b	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234549.a.a.a.a.a.b.a	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00390000008767.c.a	ENSGT00390000008767.d
Episquamata	ANCESTRAL SPECIES	1	ENSGT00390000006988	ENSGT00940000156616	ENSGT00390000012980.b ##18	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234549.a.a.a.a.a.b.a	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00960000190239	ENSGT00470000042297
Toxicofera	ANCESTRAL SPECIES	1	ENSGT00390000006988	ENSGT00940000156616	ENSGT00390000012980.b ##18	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00960000190525	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00960000190239	ENSGT00470000042297
Elapidae	ANCESTRAL SPECIES	1	ENSGT00940000162211	ENSGT00390000015714	ENSGT00390000006988	ENSGT00940000156616	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234648.a.b.a.a.a.i	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00960000190239	ENSGT00470000042297
Elapidae_a	ANCESTRAL SPECIES	57	ENSGT00390000007975.b	ENSGT00940000162211	ENSGT00390000015714	ENSGT00390000006988	ENSGT00940000156616	ENSGT01090000260100.A	ENSGT00940000157078.mb	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT01030000234648.a.b.a.a.a.i	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00610000087427	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00960000190239
Acanthophiinae	ANCESTRAL SPECIES	5	ENSGT00390000007975.b	ENSGT00940000162211	ENSGT00390000015714	ENSGT00390000006988.d	ENSGT00940000156616	ENSGT01090000260100.A	ENSGT00940000157078.mb	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT01030000234648.a.b.a.a.a.i	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00610000087427	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00960000190239
Eastern brown snake	MODERN SPECIES	130												HMGA1 (ENSPTXG00000017561)	SMIM29 (ENSPTXG00000017560)	NUDT3 (ENSPTXG00000017559)	RPS10 (ENSPTXG00000017558)	PACSIN1 (ENSPTXG00000017557) ##22	SPDEF (ENSPTXG00000017556)	ILRUN (ENSPTXG00000017555)	SNRPC (ENSPTXG00000017554)	BLTP3A (ENSPTXG00000017553)	ENSPTXG00000017551	ANKS1A (ENSPTXG00000015270)	ENSPTXG00000015256	ENSPTXG00000015253	SCUBE3 (ENSPTXG00000015243) ##16	ZNF76 (ENSPTXG00000015237)	DEF6 (ENSPTXG00000015232)	PPARD (ENSPTXG00000015228)	ENSPTXG00000015225	ENSPTXG00000015224	ENSPTXG00000015223
Mainland tiger snake	MODERN SPECIES	131						ENSNSUG00000011954	IP6K3 (ENSNSUG00000011927)	LEMD2 (ENSNSUG00000011926)	ENSNSUG00000011925	ENSNSUG00000011924	GRM4 (ENSNSUG00000011923)	HMGA1 (ENSNSUG00000011921)	SMIM29 (ENSNSUG00000011920)	NUDT3 (ENSNSUG00000011919)	RPS10 (ENSNSUG00000011918)	PACSIN1 (ENSNSUG00000011916) ##22	SPDEF (ENSNSUG00000011915)	ILRUN (ENSNSUG00000011914)	SNRPC (ENSNSUG00000011913)	BLTP3A (ENSNSUG00000011912)	ENSNSUG00000011911	ANKS1A (ENSNSUG00000011910)	ENSNSUG00000011909	SCUBE3 (ENSNSUG00000011908) ##16	ENSNSUG00000011907	DEF6 (ENSNSUG00000011906)	ENSNSUG00000011905	PPARD (ENSNSUG00000011904)	ENSNSUG00000011903	FANCE (ENSNSUG00000011902)	ENSNSUG00000011901
Blue-lipped sea krait	MODERN SPECIES	712																PACSIN1 (ENSLLTG00000002159) ##22	SPDEF (ENSLLTG00000002165)
Indian cobra	MODERN SPECIES	2	KCTD20 (ENSNNAG00000009750)	ETV7 (ENSNNAG00000009704)	NFYA (ENSNNAG00000009649)	OARD1 (ENSNNAG00000009595)	APOBEC2 (ENSNNAG00000009562)	ITPR3 (ENSNNAG00000006068)	UQCC2 (ENSNNAG00000005816)	IP6K3 (ENSNNAG00000005795)	LEMD2 (ENSNNAG00000005768)	MLN (ENSNNAG00000005751)	GRM4 (ENSNNAG00000005621)	HMGA1 (ENSNNAG00000005594)	SMIM29 (ENSNNAG00000005577)	NUDT3 (ENSNNAG00000005555)	RPS10 (ENSNNAG00000005537)	PACSIN1 (ENSNNAG00000005506) ##22	SPDEF (ENSNNAG00000005492)	ILRUN (ENSNNAG00000005463)	ENSNNAG00000005441	BLTP3A (ENSNNAG00000005397)	ENSNNAG00000005382	ANKS1A (ENSNNAG00000005133)	ENSNNAG00000004778	SCUBE3 (ENSNNAG00000004594) ##16	ZNF76 (ENSNNAG00000004552)	DEF6 (ENSNNAG00000004512)	PPARD (ENSNNAG00000004475)	ENSNNAG00000004438	FANCE (ENSNNAG00000004388)	ENSNNAG00000004362	TREM2 (ENSNNAG00000004340)
Lizard	MODERN SPECIES	3	IP6K3 (ENSACAG00000016147)	ENSACAG00000016140	MLN (ENSACAG00000022014)	ENSACAG00000039336	rh2 (ENSACAG00000016065)	ENSACAG00000045221	ENSACAG00000039763	ENSACAG00000036298	ENSACAG00000016044	ENSACAG00000042036	GRM4 (ENSACAG00000015953)	HMGA1 (ENSACAG00000015910)	SMIM29 (ENSACAG00000024314)	NUDT3 (ENSACAG00000028344)	ENSACAG00000015886	PACSIN1 (ENSACAG00000015801) ##22	SPDEF (ENSACAG00000015770)	ENSACAG00000037538	ILRUN (ENSACAG00000015742)	SNRPC (ENSACAG00000015721)	BLTP3A (ENSACAG00000001504)	ENSACAG00000001573	ANKS1A (ENSACAG00000001592)	ENSACAG00000001834	ENSACAG00000040370	ENSACAG00000035209	SCUBE3 (ENSACAG00000001947) ##16	DEF6 (ENSACAG00000002129)	PPARD (ENSACAG00000002228)	ENSACAG00000002322	FANCE (ENSACAG00000002350)
Laterata	ANCESTRAL SPECIES	3	ENSGT00390000006988	ENSGT00940000156616	ENSGT00390000012980.b ##18	ENSGT01090000260100.A	ENSGT00940000157078	ENSGT00510000048041	ENSGT00940000160887	ENSGT00940000160955	ENSGT00390000000489	ENSGT01030000234549.a.a.a.a.a.b.a	ENSGT01030000234648.a.b.a.a.a	ENSGT00730000111329	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918.r	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16	ENSGT00940000160911	ENSGT00950000183017.b.b.a.b	ENSGT00940000156676	ENSGT00950000183077.b	ENSGT00390000000705	ENSGT00960000190239	ENSGT00470000042297
Argentine black and white tegu	MODERN SPECIES	16	OARD1 (ENSSMRG00000021024)	APOBEC2 (ENSSMRG00000021025)	TSPO2 (ENSSMRG00000021026) ##18	BAK1 (ENSSMRG00000021028)	ITPR3 (ENSSMRG00000021174)	UQCC2 (ENSSMRG00000023116)	IP6K3 (ENSSMRG00000023117)	LEMD2 (ENSSMRG00000023118)	ENSSMRG00000000018	ENSSMRG00000000044	GRM4 (ENSSMRG00000000779)	ENSSMRG00000000807	SMIM29 (ENSSMRG00000000816)	NUDT3 (ENSSMRG00000000821)	RPS10 (ENSSMRG00000000829)	PACSIN1 (ENSSMRG00000000840) ##22	SPDEF (ENSSMRG00000000860)	ILRUN (ENSSMRG00000000912)	SNRPC (ENSSMRG00000000931)	BLTP3A (ENSSMRG00000000949)	ENSSMRG00000000997	ANKS1A (ENSSMRG00000001033)	ENSSMRG00000001079	ENSSMRG00000001082	SCUBE3 (ENSSMRG00000001879) ##16	ZNF76 (ENSSMRG00000001933)	DEF6 (ENSSMRG00000001956)	PPARD (ENSSMRG00000001965)	ENSSMRG00000002029	FANCE (ENSSMRG00000002032)	ENSSMRG00000002038
Common wall lizard	MODERN SPECIES	14	APOBEC2 (ENSPMRG00000007289)	TSPO2 (ENSPMRG00000007294) ##18	BAK1 (ENSPMRG00000007303)	ENSPMRG00000007310	ITPR3 (ENSPMRG00000008140)	UQCC2 (ENSPMRG00000012294)	IP6K3 (ENSPMRG00000012298)	LEMD2 (ENSPMRG00000012303)	MLN (ENSPMRG00000012308)	ENSPMRG00000012313	GRM4 (ENSPMRG00000012324)	HMGA1 (ENSPMRG00000012333)	SMIM29 (ENSPMRG00000012339)	NUDT3 (ENSPMRG00000012347)	RPS10 (ENSPMRG00000012353)	PACSIN1 (ENSPMRG00000012362) ##22	SPDEF (ENSPMRG00000012387)	ILRUN (ENSPMRG00000012393)	SNRPC (ENSPMRG00000012398)	BLTP3A (ENSPMRG00000012404)	ANKS1A (ENSPMRG00000012513)	ENSPMRG00000012945	ENSPMRG00000013016	SCUBE3 (ENSPMRG00000013119) ##16	ENSPMRG00000013624	ENSPMRG00000013630	DEF6 (ENSPMRG00000013636)	PPARD (ENSPMRG00000013642)	ENSPMRG00000013647	ENSPMRG00000013649	ENSPMRG00000013651
tuatara	MODERN SPECIES	645											GRM4 (ENSSPUG00000002598)	HMGA1 (ENSSPUG00000002580)	SMIM29 (ENSSPUG00000002577)	NUDT3 (ENSSPUG00000002568)	RPS10 (ENSSPUG00000002562)	PACSIN1 (ENSSPUG00000002540) ##22	SPDEF (ENSSPUG00000002521)	ILRUN (ENSSPUG00000002512)	SNRPC (ENSSPUG00000002502)	BLTP3A (ENSSPUG00000002450)	ENSSPUG00000002434	ANKS1A (ENSSPUG00000002405)	ENSSPUG00000002320
Anura	ANCESTRAL SPECIES	383																ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997
Frog	MODERN SPECIES	2	ENSXETG00000048655	zc3h11a (ENSXETG00000000439)	mapk14 (ENSXETG00000000438)	ENSXETG00000043890	ENSXETG00000042261	srpk1 (ENSXETG00000000426)	clps (ENSXETG00000043327)	ENSXETG00000048423	ENSXETG00000041977	tulp1 (ENSXETG00000000422)	ENSXETG00000044991	ENSXETG00000049100	smpd2 (ENSXETG00000000421)	rpl10a (ENSXETG00000012374)	ENSXETG00000047274	pacsin1 (ENSXETG00000012375) ##22	spdef (ENSXETG00000034149)	ENSXETG00000046331	ilrun (ENSXETG00000034908)	snrpc (ENSXETG00000024721)	ENSXETG00000043037	ENSXETG00000049410	ENSXETG00000042800	ENSXETG00000042974	uhrf1bp1 (ENSXETG00000035393)	ENSXETG00000044171	taf11 (ENSXETG00000049377)	ENSXETG00000049449	ENSXETG00000044103	sox13 (ENSXETG00000017139)	ren (ENSXETG00000007042)
Coelacanth	MODERN SPECIES	248	TRIM33 (ENSLACG00000018328)	SYT6 (ENSLACG00000018159)	OLFML3 (ENSLACG00000018099)	TMEM183A (ENSLACG00000018086)	PPIL1 (ENSLACG00000018050)	ENSLACG00000017965	ENSLACG00000017845	KIF21B (ENSLACG00000017760)	CACNA1S (ENSLACG00000017615)	ENSLACG00000017608	TMEM9 (ENSLACG00000017539)	ENSLACG00000022243	CELSR2 (ENSLACG00000017360)	ELAPOR1 (ENSLACG00000017265)	RPS10 (ENSLACG00000017219)	PACSIN1 (ENSLACG00000017058) ##22	SPDEF (ENSLACG00000017022)	ILRUN (ENSLACG00000016868)	FKBP5 (ENSLACG00000016751)	ENSLACG00000016673	TEAD3 (ENSLACG00000016444)	smpd2a (ENSLACG00000016351)	ENSLACG00000016259	rpl10a (ENSLACG00000015995)	FANCE (ENSLACG00000022320)	mkrn4 (ENSLACG00000015839)	PPARD (ENSLACG00000015749)	DEF6 (ENSLACG00000015594)	ZNF76 (ENSLACG00000015486)	SCUBE3 (ENSLACG00000014997) ##16	ENSLACG00000014744
Actinopterygii	ANCESTRAL SPECIES	134	ENSGT00990000203541.a.a.b	ENSGT00390000012644	ENSGT00940000159650	ENSGT00940000156194	ENSGT00940000158771	ENSGT00950000182956.b.b.b.e.a	ENSGT00390000009166	ENSGT00940000158040	ENSGT00940000156637	ENSGT00940000156777	ENSGT00440000039564.a.a	ENSGT01030000234588.b.a	ENSGT00730000112095	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16
Neopterygii	ANCESTRAL SPECIES	79	ENSGT00940000155067.b.b	ENSGT01030000234555.a.a.b.a.b.a	ENSGT00940000158771	ENSGT00950000182956.b.b.b.e.a	ENSGT00390000009166	ENSGT00940000158040	ENSGT00940000156637	ENSGT00940000156777	ENSGT00440000039564.a.a	ENSGT01030000234588.b.a	ENSGT00730000112095	ENSGT00940000154709.a.b.a	ENSGT00940000156735	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806	ENSGT00940000160792	ENSGT00940000153185.a.a.b ##16
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	246								ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000160123.e.b	ENSGT01030000234648.a.b.a.a.a	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.d ##22	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16
Clupeocephala	ANCESTRAL SPECIES	90	ENSGT01030000234588.a.b	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00410000025882.b	ENSGT00940000157392.p	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.l	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000163310.l	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b
Euteleosteomorpha	ANCESTRAL SPECIES	22	ENSGT01030000234588.a.a.a.a	ENSGT00940000156777.c	ENSGT01010000223242	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00390000013981.b	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00940000165292	ENSGT00940000177480.b	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163310.k.a	ENSGT00940000167346	ENSGT00990000203827
Acanthomorphata	ANCESTRAL SPECIES	26	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT01010000223242	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00390000013981.b	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000177480.b	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000163310.k.b	ENSGT00940000164219	ENSGT00940000161381
Euacanthomorphacea	ANCESTRAL SPECIES	1	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT01010000223242	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00390000013981.b	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000163310.k.b	ENSGT00940000164219	ENSGT00940000161381	ENSGT00940000154967.a.a.b
Percomorphaceae	ANCESTRAL SPECIES	1	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT01010000223242	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00390000013981.b	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000163310.k.b	ENSGT00940000164219	ENSGT00940000161381	ENSGT00940000154967.a.a.b
Tiger tail seahorse	MODERN SPECIES	82	smpd2a (ENSHCOG00000001358)	ENSHCOG00000001365	ENSHCOG00000001371	tnni1b (ENSHCOG00000001383)	csrp1b (ENSHCOG00000001389)	ENSHCOG00000001393	NAV1 (ENSHCOG00000001436)	mybphb (ENSHCOG00000000571)	SYT2 (ENSHCOG00000001474)	ENSHCOG00000001508	ENSHCOG00000001530	igfn1.1 (ENSHCOG00000001545)	GRM4 (ENSHCOG00000001550)	nudt3b (ENSHCOG00000001555)	rps10 (ENSHCOG00000001560)	pacsin1b (ENSHCOG00000001573) ##22	SPDEF (ENSHCOG00000001583)	ilrun (ENSHCOG00000001590)	snrpc (ENSHCOG00000001596)	ENSHCOG00000001608	phc2b (ENSHCOG00000001617)	SLC2A1 (ENSHCOG00000001627)	ENSHCOG00000001633	RAP1GAP (ENSHCOG00000001665)	padi2 (ENSHCOG00000001680)	LRIG2 (ENSHCOG00000001695)	MAGI3 (ENSHCOG00000001732)	ENSHCOG00000001754	ENSHCOG00000001761	PLXNA2 (ENSHCOG00000001780)	ENSHCOG00000001787
Percomorphaceae_B	ANCESTRAL SPECIES	3	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT01010000223242	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00390000013981.b	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000177480.b	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000163310.k.b	ENSGT00940000164219	ENSGT00940000161381
Ovalentaria	ANCESTRAL SPECIES	2	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT01010000223242	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000178767	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000163310.k.b	ENSGT00940000154967.a.a.b	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b
Ovalentaria_B	ANCESTRAL SPECIES	5	ENSGT00940000154709.a.b.a.a	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000178767	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b	ENSGT00390000008414.g	ENSGT01050000244850.C.b.u.b
Pomacentridae	ANCESTRAL SPECIES	56	ENSGT00940000154709.a.b.a.a	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000178767	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b	ENSGT00390000008414.g	ENSGT01050000244850.C.b.u.b
Pomacentridae_A	ANCESTRAL SPECIES	72				ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000178767	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b	ENSGT00390000008414.g	ENSGT01050000244850.C.b.u.b
Amphiprion	ANCESTRAL SPECIES	133			ENSGT00940000155094.a	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000178767	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b	ENSGT00390000008414.g	ENSGT01050000244850.C.b.u.b
Orange clownfish	MODERN SPECIES	20	C1QB (ENSAPEG00000022650)	ENSAPEG00000022662	NAV1 (ENSAPEG00000022675)	ENSAPEG00000022719	mybphb (ENSAPEG00000022802)	SYT2 (ENSAPEG00000022843)	ENSAPEG00000022861	ENSAPEG00000022879	ENSAPEG00000022895	ENSAPEG00000022948	ENSAPEG00000022999	ENSAPEG00000023034	GRM4 (ENSAPEG00000023066)	nudt3b (ENSAPEG00000023085)	rps10 (ENSAPEG00000023100)	pacsin1b (ENSAPEG00000023139) ##22	SPDEF (ENSAPEG00000023160)	ilrun (ENSAPEG00000023186)	snrpc (ENSAPEG00000023221)	ANKS1A (ENSAPEG00000023226)	ENSAPEG00000023252	phc2b (ENSAPEG00000023278)	SLC2A1 (ENSAPEG00000023415)	RAP1GAP (ENSAPEG00000023448)	padi2 (ENSAPEG00000023471)	LRIG2 (ENSAPEG00000023495)	MAGI3 (ENSAPEG00000023545)	ENSAPEG00000023647	ENSAPEG00000023691	ENSAPEG00000023698	PLXNA2 (ENSAPEG00000023716)
Clown anemonefish	MODERN SPECIES	1017			ENSAOCG00000022058	NAV1 (ENSAOCG00000022044)	mybphb (ENSAOCG00000021968)	SYT2 (ENSAOCG00000021956)	ENSAOCG00000021942	ENSAOCG00000021928	ENSAOCG00000021891	ENSAOCG00000021706	ENSAOCG00000021641	ENSAOCG00000021515	GRM4 (ENSAOCG00000021348)	nudt3b (ENSAOCG00000021293)	rps10 (ENSAOCG00000021264)	pacsin1b (ENSAOCG00000021240) ##22	SPDEF (ENSAOCG00000002774)	ilrun (ENSAOCG00000021181)	snrpc (ENSAOCG00000021151)
Spiny chromis	MODERN SPECIES	354				ttc27 (ENSAPOG00000009088)	ENSAPOG00000009104	BIRC6 (ENSAPOG00000009525)	yipf4 (ENSAPOG00000009576)	exo1 (ENSAPOG00000009757)	ENSAPOG00000009791	ENSAPOG00000009801	PDZD8 (ENSAPOG00000009843)	ENSAPOG00000009863	GRM4 (ENSAPOG00000009946)	nudt3b (ENSAPOG00000009989)	rps10 (ENSAPOG00000010000)	pacsin1b (ENSAPOG00000010031) ##22	SPDEF (ENSAPOG00000010069)
Bicolor damselfish	MODERN SPECIES	241	ENSSPAG00000001837	ENSSPAG00000001813	tnni1b (ENSSPAG00000001794)	csrp1b (ENSSPAG00000001776)	NAV1 (ENSSPAG00000001711)	mybphb (ENSSPAG00000001684)	SYT2 (ENSSPAG00000001643)	ENSSPAG00000001630	ENSSPAG00000001532	ENSSPAG00000001329	ENSSPAG00000001273	ENSSPAG00000001122	GRM4 (ENSSPAG00000001061)	nudt3b (ENSSPAG00000001034)	rps10 (ENSSPAG00000001013)	pacsin1b (ENSSPAG00000000962) ##22	SPDEF (ENSSPAG00000000942)	ilrun (ENSSPAG00000000921)	snrpc (ENSSPAG00000000914)	ANKS1A (ENSSPAG00000000868)	ENSSPAG00000000862	phc2b (ENSSPAG00000000850)	SLC2A1 (ENSSPAG00000000791)	RAP1GAP (ENSSPAG00000000689)	padi2 (ENSSPAG00000000670)	LRIG2 (ENSSPAG00000000656)	MAGI3 (ENSSPAG00000000505)	ENSSPAG00000000465	ENSSPAG00000000444	ENSSPAG00000000436	PLXNA2 (ENSSPAG00000000320)
Cichlidae	ANCESTRAL SPECIES	1	ENSGT00390000009166	ENSGT00940000156735.c	ENSGT00940000154709.a.b.a.a	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b	ENSGT00390000008414.g	ENSGT01050000244850.C.b.u.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	4	ENSGT00390000009166	ENSGT00940000156735.c	ENSGT00940000154709.a.b.a.a	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b	ENSGT00390000008414.g	ENSGT01050000244850.C.b.u.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	2	ENSGT00390000009166	ENSGT00940000156735.c	ENSGT00940000154709.a.b.a.a	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b.b	ENSGT00990000205310	ENSGT00940000163460.a.b.a
Haplochromini	ANCESTRAL SPECIES	1	ENSGT00390000009166	ENSGT00940000156735.c	ENSGT00940000154709.a.b.a.a	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b.b	ENSGT00990000205310	ENSGT00940000163460.a.b.a
Burton s mouthbrooder	MODERN SPECIES	290	tead3b (ENSHBUG00000010605)	ENSHBUG00000010676	ENSHBUG00000010708	tnni1b (ENSHBUG00000010748)	csrp1b (ENSHBUG00000010771)	NAV1 (ENSHBUG00000010887)	mybphb (ENSHBUG00000010955)	SYT2 (ENSHBUG00000011009)	ENSHBUG00000011017	ENSHBUG00000011298	ENSHBUG00000011389	ENSHBUG00000011488	GRM4 (ENSHBUG00000011533)	nudt3b (ENSHBUG00000011550)	rps10 (ENSHBUG00000011566)	pacsin1b (ENSHBUG00000011583) ##22	SPDEF (ENSHBUG00000011607)	ilrun (ENSHBUG00000011627)	snrpc (ENSHBUG00000011637)	ANKS1A (ENSHBUG00000011669)	ENSHBUG00000011683	ENSHBUG00000011706	ENSHBUG00000011734	SLC2A1 (ENSHBUG00000011765)	RAP1GAP (ENSHBUG00000011803)	padi2 (ENSHBUG00000011820)	LRIG2 (ENSHBUG00000011830)	MAGI3 (ENSHBUG00000000329)	ENSHBUG00000011932	ENSHBUG00000011956	ENSHBUG00000011963
Haplochromini_A	ANCESTRAL SPECIES		ENSGT00390000009166	ENSGT00940000156735.c	ENSGT00940000154709.a.b.a.a	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b.b	ENSGT00940000163460.a.b.a	ENSGT00390000008414.g
P. nyererei	MODERN SPECIES	329	smpd2a (ENSPNYG00000005567)	PKP1 (ENSPNYG00000005548)	ENSPNYG00000005495	tnni1b (ENSPNYG00000005459)	csrp1b (ENSPNYG00000005431)	NAV1 (ENSPNYG00000005359)	mybphb (ENSPNYG00000005332)	SYT2 (ENSPNYG00000005311)	ENSPNYG00000005289	ENSPNYG00000005207	ENSPNYG00000005137	ENSPNYG00000005106	GRM4 (ENSPNYG00000005053)	nudt3b (ENSPNYG00000005021)	rps10 (ENSPNYG00000005008)	pacsin1b (ENSPNYG00000004974) ##22	SPDEF (ENSPNYG00000004949)	ilrun (ENSPNYG00000004926)	snrpc (ENSPNYG00000004900)	ANKS1A (ENSPNYG00000004851)	ENSPNYG00000004783	ENSPNYG00000004747	ENSPNYG00000004717	SLC2A1 (ENSPNYG00000004661)	RAP1GAP (ENSPNYG00000004584)	padi2 (ENSPNYG00000004550)	LRIG2 (ENSPNYG00000004534)	MAGI3 (ENSPNYG00000004487)	ENSPNYG00000004473	ENSPNYG00000004452	ENSPNYG00000004437
Haplochromini_B	ANCESTRAL SPECIES		ENSGT00390000009166	ENSGT00940000156735.c	ENSGT00940000154709.a.b.a.a	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b.b	ENSGT00940000163460.a.b.a	ENSGT00390000008414.g
Zebra mbuna	MODERN SPECIES	1108	smpd2a (ENSMZEG00005002958)	PKP1 (ENSMZEG00005002931)	ENSMZEG00005002768	tnni1b (ENSMZEG00005002731)	csrp1b (ENSMZEG00005002716)	NAV1 (ENSMZEG00005002646)	mybphb (ENSMZEG00005002628)	SYT2 (ENSMZEG00005002615)	ENSMZEG00005002589	ENSMZEG00005002451	ENSMZEG00005002367	ENSMZEG00005002358	GRM4 (ENSMZEG00005002311)	nudt3b (ENSMZEG00005002284)	rps10 (ENSMZEG00005002276)	pacsin1b (ENSMZEG00005002257) ##22	SPDEF (ENSMZEG00005002226)	ilrun (ENSMZEG00005002206)	snrpc (ENSMZEG00005002199)	ANKS1A (ENSMZEG00005002164)	ENSMZEG00005002149	ENSMZEG00005002127	ENSMZEG00005002101	SLC2A1 (ENSMZEG00005002073)	RAP1GAP (ENSMZEG00005002028)	padi2 (ENSMZEG00005001990)	LRIG2 (ENSMZEG00005001965)	MAGI3 (ENSMZEG00005001917)	ENSMZEG00005001862	ENSMZEG00005001828	ENSMZEG00005001822
Eastern happy	MODERN SPECIES	17	smpd2a (ENSACLG00000022892)	PKP1 (ENSACLG00000022905)	ENSACLG00000022933	tnni1b (ENSACLG00000023120)	csrp1b (ENSACLG00000023130)	NAV1 (ENSACLG00000000040)	mybphb (ENSACLG00000000129)	SYT2 (ENSACLG00000000137)	ENSACLG00000000150	ENSACLG00000000179	ENSACLG00000000387	ENSACLG00000000512	GRM4 (ENSACLG00000000676)	nudt3b (ENSACLG00000000730)	rps10 (ENSACLG00000000755)	pacsin1b (ENSACLG00000000768) ##22	SPDEF (ENSACLG00000000801)	ilrun (ENSACLG00000000818)	snrpc (ENSACLG00000000843)	ANKS1A (ENSACLG00000000853)	ENSACLG00000000876	ENSACLG00000000893	SLC2A1 (ENSACLG00000000935)	RAP1GAP (ENSACLG00000001005)	padi2 (ENSACLG00000001118)	LRIG2 (ENSACLG00000001147)	MAGI3 (ENSACLG00000001174)	ENSACLG00000001311	ENSACLG00000001338	ENSACLG00000001353	PLXNA2 (ENSACLG00000001465)
Lyretail cichlid	MODERN SPECIES	294	smpd2a (ENSNBRG00000008403)	ENSNBRG00000008424	ENSNBRG00000008446	tnni1b (ENSNBRG00000008476)	csrp1b (ENSNBRG00000008508)	NAV1 (ENSNBRG00000008543)	mybphb (ENSNBRG00000008627)	SYT2 (ENSNBRG00000008667)	ENSNBRG00000008745	ENSNBRG00000008779	ENSNBRG00000008881	ENSNBRG00000008957	GRM4 (ENSNBRG00000009022)	nudt3b (ENSNBRG00000009064)	rps10 (ENSNBRG00000009084)	pacsin1b (ENSNBRG00000009125) ##22	SPDEF (ENSNBRG00000009239)	ilrun (ENSNBRG00000009272)	snrpc (ENSNBRG00000009297)	ANKS1A (ENSNBRG00000009341)	ENSNBRG00000009392	ENSNBRG00000009398	phc2b (ENSNBRG00000009433)	SLC2A1 (ENSNBRG00000009585)	RAP1GAP (ENSNBRG00000009645)	padi2 (ENSNBRG00000009735)	LRIG2 (ENSNBRG00000009907)	MAGI3 (ENSNBRG00000009969)	ENSNBRG00000010051	ENSNBRG00000010056	ENSNBRG00000010073
Nile tilapia	MODERN SPECIES	17	smpd2a (ENSONIG00000014702)	ENSONIG00000014703	ENSONIG00000014705	tnni1b (ENSONIG00000014712)	csrp1b (ENSONIG00000014714)	NAV1 (ENSONIG00000014720)	mybphb (ENSONIG00000014722)	SYT2 (ENSONIG00000029530)	ENSONIG00000022671	ENSONIG00000031324	ENSONIG00000014732	igfn1.1 (ENSONIG00000014736)	GRM4 (ENSONIG00000014738)	nudt3b (ENSONIG00000014742)	rps10 (ENSONIG00000014744)	pacsin1b (ENSONIG00000014749) ##22	SPDEF (ENSONIG00000014752)	ilrun (ENSONIG00000014754)	ENSONIG00000033132	ANKS1A (ENSONIG00000014758)	ENSONIG00000014761	phc2b (ENSONIG00000014763)	glut1 (ENSONIG00000014767)	RAP1GAP (ENSONIG00000014775)	padi2 (ENSONIG00000014783)	LRIG2 (ENSONIG00000014788)	MAGI3 (ENSONIG00000014790)	ENSONIG00000034263	ENSONIG00000032509	ENSONIG00000023438	PLXNA2 (ENSONIG00000014795)
Midas cichlid	MODERN SPECIES	867	tead3b (ENSACIG00000009716)	smpd2a (ENSACIG00000010069)	ENSACIG00000010117	ENSACIG00000010133	tnni1b (ENSACIG00000010207)	csrp1b (ENSACIG00000010225)	NAV1 (ENSACIG00000010245)	mybphb (ENSACIG00000010317)	SYT2 (ENSACIG00000010463)	ENSACIG00000010493	ENSACIG00000010651	ENSACIG00000010704	GRM4 (ENSACIG00000010762)	nudt3b (ENSACIG00000010785)	rps10 (ENSACIG00000010800)	pacsin1b (ENSACIG00000010810) ##22	SPDEF (ENSACIG00000010833)	ilrun (ENSACIG00000010853)	snrpc (ENSACIG00000010867)	ANKS1A (ENSACIG00000010885)	ENSACIG00000010922	phc2b (ENSACIG00000010948)	SLC2A1 (ENSACIG00000011092)	RAP1GAP (ENSACIG00000011117)	padi2 (ENSACIG00000011164)	LRIG2 (ENSACIG00000011319)	MAGI3 (ENSACIG00000011370)	ENSACIG00000011443	ENSACIG00000011452	ENSACIG00000011483	ENSACIG00000011560
Atherinomorphae	ANCESTRAL SPECIES	2	ENSGT00940000156735.c	ENSGT00940000154709.a.b.a.a	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT01010000223242	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000163310.k.b	ENSGT00990000203957	ENSGT00940000163310.k.a	ENSGT00940000154967.a.a.b
Cyprinodontiformes	ANCESTRAL SPECIES	2	ENSGT00940000156735.c	ENSGT00940000154709.a.b.a.a	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT01010000223242	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b	ENSGT00390000008414.g	ENSGT01050000244850.C.b.u.b
Aplocheiloidei	ANCESTRAL SPECIES	10	ENSGT00390000009166	ENSGT00940000156735.c	ENSGT00940000154709.a.b.a.a	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b	ENSGT00390000008414.g	ENSGT01050000244850.C.b.u.b
Mangrove rivulus	MODERN SPECIES	11	smpd2a (ENSKMAG00000015753)	ENSKMAG00000015800	ENSKMAG00000015840	tnni1b (ENSKMAG00000015857)	csrp1b (ENSKMAG00000015872)	NAV1 (ENSKMAG00000015887)	mybphb (ENSKMAG00000015946)	SYT2 (ENSKMAG00000016008)	ENSKMAG00000016052	ENSKMAG00000016084	ENSKMAG00000016152	ENSKMAG00000016195	GRM4 (ENSKMAG00000016235)	nudt3b (ENSKMAG00000016261)	rps10 (ENSKMAG00000016280)	pacsin1b (ENSKMAG00000016303) ##22	SPDEF (ENSKMAG00000016328)	ilrun (ENSKMAG00000016339)	snrpc (ENSKMAG00000016356)	ENSKMAG00000016371	ENSKMAG00000016417	phc2b (ENSKMAG00000016440)	SLC2A1 (ENSKMAG00000016477)	RAP1GAP (ENSKMAG00000016533)	padi2 (ENSKMAG00000016644)	LRIG2 (ENSKMAG00000016684)	MAGI3 (ENSKMAG00000016724)	ENSKMAG00000016855	ENSKMAG00000016925	ENSKMAG00000016936	PLXNA2 (ENSKMAG00000016947)
Turquoise killifish	MODERN SPECIES	1619	ENSNFUG00015012617	NAV1 (ENSNFUG00015012296)	MYBPHB (ENSNFUG00015012140)	ENSNFUG00015012117	SYT2 (ENSNFUG00015012105)	ENSNFUG00015012095	ENSNFUG00015012077	ENSNFUG00015012067	ENSNFUG00015012063	ENSNFUG00015012054	ENSNFUG00015012022	ENSNFUG00015012008	GRM4 (ENSNFUG00015011848)	NUDT3 (ENSNFUG00015011802)	RPS10 (ENSNFUG00015011779)	pacsin1b (ENSNFUG00015011533) ##22	SPDEF (ENSNFUG00015011501)	C6H6ORF106 (ENSNFUG00015011493)	snrpc (ENSNFUG00015011478)	ENSNFUG00015011446	phc2b (ENSNFUG00015011435)	SLC2A1B (ENSNFUG00015011338)	RAP1GAP (ENSNFUG00015011249)	padi2 (ENSNFUG00015010699)	ENSNFUG00015010639	LRIG2 (ENSNFUG00015010620)	ENSNFUG00015010610	MAGI3 (ENSNFUG00015010562)	ENSNFUG00015010547	ENSNFUG00015010540	Nfu_g_1_020813 (ENSNFUG00015010528)
Cyprinodontoidei	ANCESTRAL SPECIES	4	ENSGT00940000156735.c	ENSGT00940000154709.a.b.a.a	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT01010000223242	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b	ENSGT00390000008414.g	ENSGT01050000244850.C.b.u.b
Poeciliinae	ANCESTRAL SPECIES	4	ENSGT00390000009166	ENSGT00940000156735.c	ENSGT00940000154709.a.b.a.a	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b	ENSGT00390000008414.g	ENSGT01050000244850.C.b.u.b
Poecilia	ANCESTRAL SPECIES	25	ENSGT00390000009166	ENSGT00940000156735.c	ENSGT00940000154709.a.b.a.a	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000176218	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b	ENSGT00390000008414.g	ENSGT01050000244850.C.b.u.b
NAME_6	ANCESTRAL SPECIES	43	ENSGT00390000009166	ENSGT00940000156735.c	ENSGT00940000154709.a.b.a.a	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000176218	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b	ENSGT00390000008414.g	ENSGT01050000244850.C.b.u.b
Sailfin molly	MODERN SPECIES	501													GRM4 (ENSPLAG00000012444)	nudt3b (ENSPLAG00000012406)	rps10 (ENSPLAG00000012383)	pacsin1b (ENSPLAG00000000268) ##22	SPDEF (ENSPLAG00000012343)	ilrun (ENSPLAG00000012326)	snrpc (ENSPLAG00000012311)	ENSPLAG00000012305
Amazon molly	MODERN SPECIES	270	smpd2a (ENSPFOG00000014164)	ENSPFOG00000014167	ENSPFOG00000014199	tnni1b (ENSPFOG00000014255)	csrp1b (ENSPFOG00000014277)	NAV1 (ENSPFOG00000014306)	mybphb (ENSPFOG00000014669)	SYT2 (ENSPFOG00000014693)	ENSPFOG00000023959	ENSPFOG00000014722	ENSPFOG00000014782	igfn1.1 (ENSPFOG00000014846)	GRM4 (ENSPFOG00000014917)	nudt3b (ENSPFOG00000015050)	rps10 (ENSPFOG00000015072)	pacsin1b (ENSPFOG00000015113) ##22	SPDEF (ENSPFOG00000015137)	ilrun (ENSPFOG00000015161)	snrpc (ENSPFOG00000015174)	ENSPFOG00000015193	ENSPFOG00000015257	phc2b (ENSPFOG00000015369)	SLC2A1 (ENSPFOG00000015424)	ENSPFOG00000015496	ENSPFOG00000021940	RAP1GAP (ENSPFOG00000015562)	padi2 (ENSPFOG00000015807)	LRIG2 (ENSPFOG00000015867)	MAGI3 (ENSPFOG00000015969)	ENSPFOG00000023480	ENSPFOG00000016038
Guppy	MODERN SPECIES	457	tead3b (ENSPREG00000012159)	smpd2a (ENSPREG00000012181)	PKP1 (ENSPREG00000012195)	ENSPREG00000012219	tnni1b (ENSPREG00000012241)	csrp1b (ENSPREG00000012264)	NAV1 (ENSPREG00000012290)	mybphb (ENSPREG00000012361)	SYT2 (ENSPREG00000012505)	ENSPREG00000012569	ENSPREG00000012733	ENSPREG00000012772	GRM4 (ENSPREG00000012856)	nudt3b (ENSPREG00000012890)	rps10 (ENSPREG00000012922)	pacsin1b (ENSPREG00000012958) ##22	SPDEF (ENSPREG00000012986)	ilrun (ENSPREG00000013006)	snrpc (ENSPREG00000013017)	ENSPREG00000013044	ENSPREG00000013075	phc2b (ENSPREG00000013115)	SLC2A1 (ENSPREG00000013174)	RAP1GAP (ENSPREG00000013257)	padi2 (ENSPREG00000013395)	LRIG2 (ENSPREG00000013511)	ENSPREG00000013568	MAGI3 (ENSPREG00000013589)	ENSPREG00000013645	ENSPREG00000013662	PLXNA2 (ENSPREG00000013675)
Platyfish	MODERN SPECIES	12	smpd2a (ENSXMAG00000018088)	PKP1 (ENSXMAG00000018083)	ENSXMAG00000018046	tnni1b (ENSXMAG00000018041)	csrp1b (ENSXMAG00000018035)	NAV1 (ENSXMAG00000018024)	mybphb (ENSXMAG00000018011)	SYT2 (ENSXMAG00000017999)	ENSXMAG00000017998	ENSXMAG00000017996	ENSXMAG00000021446	ENSXMAG00000017987	GRM4 (ENSXMAG00000017974)	nudt3b (ENSXMAG00000017966)	rps10 (ENSXMAG00000028872)	pacsin1b (ENSXMAG00000017946) ##22	SPDEF (ENSXMAG00000017942)	ilrun (ENSXMAG00000017940)	snrpc (ENSXMAG00000017935)	ENSXMAG00000017925	ENSXMAG00000021563	ENSXMAG00000017919	phc2b (ENSXMAG00000017915)	SLC2A1 (ENSXMAG00000017903)	RAP1GAP (ENSXMAG00000017883)	ENSXMAG00000027635	padi2 (ENSXMAG00000017865)	LRIG2 (ENSXMAG00000017858)	MAGI3 (ENSXMAG00000028688)	ENSXMAG00000021962	ENSXMAG00000017841
NAME_4	ANCESTRAL SPECIES	37	ENSGT00940000156735.c	ENSGT00940000154709.a.b.a.a	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT01010000223242	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b	ENSGT00390000008414.g	ENSGT01050000244850.C.b.u.b
Sheepshead minnow	MODERN SPECIES	353		PKP1 (ENSCVAG00000015234)	ENSCVAG00000015221	tnni1b (ENSCVAG00000015214)	csrp1b (ENSCVAG00000015201)	NAV1 (ENSCVAG00000015186)	mybphb (ENSCVAG00000015134)	SYT2 (ENSCVAG00000015118)	ENSCVAG00000015096	ENSCVAG00000015086	ENSCVAG00000014957	ENSCVAG00000014626	GRM4 (ENSCVAG00000014517)	nudt3b (ENSCVAG00000014455)	rps10 (ENSCVAG00000014422)	pacsin1b (ENSCVAG00000014401) ##22	SPDEF (ENSCVAG00000014366)	ilrun (ENSCVAG00000014325)	snrpc (ENSCVAG00000014297)	ENSCVAG00000014279	ENSCVAG00000014217	phc2b (ENSCVAG00000014188)	SLC2A1 (ENSCVAG00000014127)	RAP1GAP (ENSCVAG00000014099)
Mummichog	MODERN SPECIES	2219	ENSFHEG00000017390	ENSFHEG00000017375	tnni1b (ENSFHEG00000017364)	csrp1b (ENSFHEG00000000435)	ENSFHEG00000017309	NAV1 (ENSFHEG00000017293)	mybphb (ENSFHEG00000017210)	SYT2 (ENSFHEG00000017200)	ENSFHEG00000017103	ENSFHEG00000017091	ENSFHEG00000016955	ENSFHEG00000016931	GRM4 (ENSFHEG00000016829)	nudt3b (ENSFHEG00000016797)	rps10 (ENSFHEG00000016772)	pacsin1b (ENSFHEG00000016757) ##22	SPDEF (ENSFHEG00000016716)	ilrun (ENSFHEG00000016680)	snrpc (ENSFHEG00000016667)	ENSFHEG00000016660	ENSFHEG00000016622	ENSFHEG00000000841	ENSFHEG00000016596	SLC2A1 (ENSFHEG00000016591)	RAP1GAP (ENSFHEG00000016558)	padi2 (ENSFHEG00000016524)	ENSFHEG00000016475	padi2 (ENSFHEG00000016461)	LRIG2 (ENSFHEG00000016418)	MAGI3 (ENSFHEG00000016396)	ENSFHEG00000016252
Oryzias	ANCESTRAL SPECIES	1	ENSGT01030000234528.B.b.a.a.a.c.b.q.a	ENSGT01030000234528.B.b.a.a.a.c.a	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT01010000223242	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b	ENSGT00390000008414.g	ENSGT01050000244850.C.b.u.b
Oryzias_b	ANCESTRAL SPECIES	3	ENSGT01030000234528.B.b.a.a.a.c.b.q.b	ENSGT01030000234528.B.b.a.a.a.c.b.q.a	ENSGT01030000234528.B.b.a.a.a.c.a	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b	ENSGT00390000008414.g	ENSGT01050000244850.C.b.u.b
Indian medaka	MODERN SPECIES	8	CELA1 (ENSOMEG00000013115)	ENSOMEG00000013096	ENSOMEG00000013070	tnni1b (ENSOMEG00000013028)	csrp1b (ENSOMEG00000013015)	NAV1 (ENSOMEG00000012980)	mybphb (ENSOMEG00000012906)	SYT2 (ENSOMEG00000012840)	ENSOMEG00000012734	ENSOMEG00000012697	ENSOMEG00000012547	ENSOMEG00000012442	GRM4 (ENSOMEG00000012281)	nudt3b (ENSOMEG00000012248)	rps10 (ENSOMEG00000012208)	pacsin1b (ENSOMEG00000012156) ##22	SPDEF (ENSOMEG00000012084)	ilrun (ENSOMEG00000012054)	snrpc (ENSOMEG00000012014)	ENSOMEG00000011963	ENSOMEG00000011838	phc2b (ENSOMEG00000011817)	SLC2A1 (ENSOMEG00000011730)	RAP1GAP (ENSOMEG00000011639)	padi2 (ENSOMEG00000011365)	padi2 (ENSOMEG00000011329)	LRIG2 (ENSOMEG00000011295)	MAGI3 (ENSOMEG00000011228)	ENSOMEG00000011132	ENSOMEG00000011079	ENSOMEG00000011060
Javanese ricefish	MODERN SPECIES	19	ENSOJAG00000005398	ENSOJAG00000005330	CELA1 (ENSOJAG00000005294)	tnni1b (ENSOJAG00000005222)	csrp1b (ENSOJAG00000005158)	NAV1 (ENSOJAG00000004821)	mybphb (ENSOJAG00000004676)	SYT2 (ENSOJAG00000004638)	ENSOJAG00000004626	ENSOJAG00000004389	ENSOJAG00000004319	igfn1.1 (ENSOJAG00000004216)	GRM4 (ENSOJAG00000003923)	nudt3b (ENSOJAG00000003847)	rps10 (ENSOJAG00000003802)	pacsin1b (ENSOJAG00000017834) ##22	SPDEF (ENSOJAG00000017819)	ilrun (ENSOJAG00000017795)	SNRPC (ENSOJAG00000017772)	ENSOJAG00000017744	ENSOJAG00000017734	phc2b (ENSOJAG00000017713)	SLC2A1 (ENSOJAG00000017340)	RAP1GAP (ENSOJAG00000016835)	padi2 (ENSOJAG00000016057)	LRIG2 (ENSOJAG00000015731)	MAGI3 (ENSOJAG00000015676)	ENSOJAG00000015624	ENSOJAG00000015609	ENSOJAG00000015602	PLXNA2 (ENSOJAG00000011712)
Oryzias_a	ANCESTRAL SPECIES	5	ENSGT01030000234528.B.b.a.a.a.c.b.q.a	ENSGT01030000234528.B.b.a.a.a.c.a	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT01010000223242	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b	ENSGT00390000008414.g	ENSGT01050000244850.C.b.u.b
Chinese medaka	MODERN SPECIES	957	ENSOSIG00000013798	CELA1 (ENSOSIG00000013817)	tnni1b (ENSOSIG00000013825)	csrp1b (ENSOSIG00000013830)	NAV1 (ENSOSIG00000013856)	ENSOSIG00000014542	mybphb (ENSOSIG00000014545)	SYT2 (ENSOSIG00000014558)	ENSOSIG00000014562	ENSOSIG00000014568	ENSOSIG00000014573	igfn1.1 (ENSOSIG00000014578)	GRM4 (ENSOSIG00000014580)	nudt3b (ENSOSIG00000014582)	rps10 (ENSOSIG00000014584)	pacsin1b (ENSOSIG00000014592) ##22	SPDEF (ENSOSIG00000014606)	ilrun (ENSOSIG00000014722)	snrpc (ENSOSIG00000014723)	ENSOSIG00000014724	ENSOSIG00000014726	phc2b (ENSOSIG00000014729)	SLC2A1 (ENSOSIG00000014751)	RAP1GAP (ENSOSIG00000016035)	LRIG2 (ENSOSIG00000016044)	MAGI3 (ENSOSIG00000016422)	ENSOSIG00000016476	ENSOSIG00000016477	ENSOSIG00000016479	PLXNA2 (ENSOSIG00000016616)	ENSOSIG00000019998
Japanese Medaka HdrR	MODERN SPECIES	19	ENSORLG00000006922	CELA1 (ENSORLG00000006967)	tnni1b (ENSORLG00000006990)	csrp1b (ENSORLG00000007008)	ENSORLG00000026873	NAV1 (ENSORLG00000007109)	mybphb (ENSORLG00000007135)	ENSORLG00000007159	ENSORLG00000022198	ENSORLG00000028532	ENSORLG00000007183	ENSORLG00000023973	ENSORLG00000007238	nudt3b (ENSORLG00000025270)	rps10 (ENSORLG00000007257)	pacsin1b (ENSORLG00000007282) ##22	SPDEF (ENSORLG00000029267)	ilrun (ENSORLG00000027412)	snrpc (ENSORLG00000007308)	ENSORLG00000024947	ENSORLG00000007347	ENSORLG00000007369	phc2b (ENSORLG00000007405)	ENSORLG00000007473	RAP1GAP (ENSORLG00000007499)	padi2 (ENSORLG00000007539)	LRIG2 (ENSORLG00000007549)	ENSORLG00000007605	ENSORLG00000028621	ENSORLG00000007616	ENSORLG00000007619
Percomorphaceae_C	ANCESTRAL SPECIES	1	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT01010000223242	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00390000013981.b	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000177480.b	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b	ENSGT00390000008414.g
Percomorphaceae_D	ANCESTRAL SPECIES	3	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT01010000223242	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00390000013981.b	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b	ENSGT00390000008414.g	ENSGT01050000244850.C.b.u.b
Carangaria	ANCESTRAL SPECIES	3	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT01010000223242	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00390000013981.b	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b	ENSGT00390000008414.g	ENSGT01050000244850.C.b.u.b
Carangaria_A	ANCESTRAL SPECIES	40													ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b	ENSGT00390000008414.g	ENSGT01050000244850.C.b.u.b
Seriola	ANCESTRAL SPECIES	61													ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT01060000248784.d	ENSGT00390000008414.g	ENSGT01050000244850.C.b.u.b
Greater amberjack	MODERN SPECIES	129													GRM4 (ENSSDUG00000019011)	nudt3b (ENSSDUG00000018990)	rps10 (ENSSDUG00000018963)	pacsin1b (ENSSDUG00000018938) ##22	SPDEF (ENSSDUG00000018926)	ilrun (ENSSDUG00000018909)	snrpc (ENSSDUG00000018895)	ENSSDUG00000018873	ENSSDUG00000018853	phc2b (ENSSDUG00000018822)	SLC2A1 (ENSSDUG00000018767)	RAP1GAP (ENSSDUG00000018720)	padi2 (ENSSDUG00000018679)	LRIG2 (ENSSDUG00000018648)	MAGI3 (ENSSDUG00000018552)	ENSSDUG00000018524	ENSSDUG00000018510	ENSSDUG00000018502	PLXNA2 (ENSSDUG00000018443)
Yellowtail amberjack	MODERN SPECIES	2846													GRM4 (ENSSLDG00000005193)	nudt3b (ENSSLDG00000005159)	rps10 (ENSSLDG00000005134)	pacsin1b (ENSSLDG00000005101) ##22	SPDEF (ENSSLDG00000005067)	ilrun (ENSSLDG00000005045)	snrpc (ENSSLDG00000005034)	ANKS1A (ENSSLDG00000004980)	ENSSLDG00000004955	phc2b (ENSSLDG00000004907)	SLC2A1 (ENSSLDG00000004833)
Barramundi perch	MODERN SPECIES	239													GRM4 (ENSLCAG00010009932)	nudt3b (ENSLCAG00010009924)	rps10 (ENSLCAG00010009915)	pacsin1b (ENSLCAG00010009907) ##22	SPDEF (ENSLCAG00010009904)	ilrun (ENSLCAG00010009901)	snrpc (ENSLCAG00010009899)	ENSLCAG00010009891	ENSLCAG00010009883	ENSLCAG00010009881	ENSLCAG00010009879	SLC2A1 (ENSLCAG00010009747)	RAP1GAP (ENSLCAG00010009691)	padi2 (ENSLCAG00010009538)	LRIG2 (ENSLCAG00010009495)	MAGI3 (ENSLCAG00010009476)	ENSLCAG00010009458	ENSLCAG00010009450	ENSLCAG00010009441
Pleuronectoidei	ANCESTRAL SPECIES	55	ENSGT00940000156735.c	ENSGT00940000154709.a.b.a.a	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT01060000248784.d	ENSGT00390000008414.g	ENSGT01050000244850.C.b.u.b
Turbot	MODERN SPECIES	18	ENSSMAG00000008963	ENSSMAG00000008926	tnni1b (ENSSMAG00000008824)	csrp1b (ENSSMAG00000008808)	ENSSMAG00000032805	ENSSMAG00000008943	mybphb (ENSSMAG00000008659)	ENSSMAG00000008642	ENSSMAG00000008636	ENSSMAG00000008517	ENSSMAG00000008481	ENSSMAG00000008370	igfn1.1 (ENSSMAG00000008245)	ENSSMAG00000008192	nudt3b (ENSSMAG00000008184)	pacsin1b (ENSSMAG00000008113) ##22	SPDEF (ENSSMAG00000008095)	ilrun (ENSSMAG00000037168)	SNRPC (ENSSMAG00000029955)	ENSSMAG00000033000	ENSSMAG00000007950	ENSSMAG00000007931	phc2b (ENSSMAG00000007825)	ENSSMAG00000007747	ENSSMAG00000007501	padi2 (ENSSMAG00000007447)	ENSSMAG00000007413	ENSSMAG00000007350	ENSSMAG00000007304	ENSSMAG00000007299	ENSSMAG00000007274
Tongue sole	MODERN SPECIES	2	ENSCSEG00000017181	hdac11 (ENSCSEG00000017168)	ENSCSEG00000017156	ENSCSEG00000017146	IQSEC1 (ENSCSEG00000017123)	acad9 (ENSCSEG00000017056)	ENSCSEG00000017040	CFAP57 (ENSCSEG00000016999)	nuf2 (ENSCSEG00000016956)	ap5b1 (ENSCSEG00000016947)	zgc:112255 (ENSCSEG00000016938)	P3H1 (ENSCSEG00000016927)	ENSCSEG00000016925	nudt3b (ENSCSEG00000016923)	rps10 (ENSCSEG00000016916)	pacsin1b (ENSCSEG00000016896) ##22	SPDEF (ENSCSEG00000016875)	ilrun (ENSCSEG00000016859)	snrpc (ENSCSEG00000016845)	ENSCSEG00000016785	TCP11X1 (ENSCSEG00000016767)	phc2b (ENSCSEG00000016708)	SLC2A1 (ENSCSEG00000016675)	RAP1GAP (ENSCSEG00000016535)	padi2 (ENSCSEG00000016500)	LRIG2 (ENSCSEG00000016483)	ENSCSEG00000016474	ENSCSEG00000016427	ENSCSEG00000016407	ENSCSEG00000016398	ENSCSEG00000016393
Anabantaria	ANCESTRAL SPECIES		ENSGT00940000156735.c	ENSGT00940000154709.a.b.a.a	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b	ENSGT00390000008414.g	ENSGT01050000244850.C.b.u.b
Zig-zag eel	MODERN SPECIES	19	ENSMAMG00000004710	ENSMAMG00000004698	ENSMAMG00000004593	tnni1b (ENSMAMG00000004575)	csrp1b (ENSMAMG00000004531)	ENSMAMG00000004474	mybphb (ENSMAMG00000004460)	ENSMAMG00000004441	ENSMAMG00000004418	ENSMAMG00000004257	ENSMAMG00000004123	igfn1.1 (ENSMAMG00000004051)	ENSMAMG00000003997	nudt3b (ENSMAMG00000003977)	rps10 (ENSMAMG00000003945)	pacsin1b (ENSMAMG00000003911) ##22	SPDEF (ENSMAMG00000003895)	ilrun (ENSMAMG00000003871)	SNRPC (ENSMAMG00000027913)	ENSMAMG00000003782	ENSMAMG00000003768	phc2b (ENSMAMG00000003660)	ENSMAMG00000003621	ENSMAMG00000003517	padi2 (ENSMAMG00000003493)	ENSMAMG00000003478	ENSMAMG00000003453	ENSMAMG00000003442	ENSMAMG00000027619	ENSMAMG00000003322	ENSMAMG00000003303
Anabantoidei	ANCESTRAL SPECIES	1	ENSGT00940000156735.c	ENSGT00940000154709.a.b.a.a	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b	ENSGT00390000008414.g	ENSGT01050000244850.C.b.u.b
Climbing perch	MODERN SPECIES	18	tnni1b (ENSATEG00000025116)	csrp1b (ENSATEG00000025117)	ENSATEG00000025118	mybphb (ENSATEG00000025119)	ENSATEG00000025120	ENSATEG00000025121	ENSATEG00000025122	ENSATEG00000025123	ENSATEG00000025124	igfn1.1 (ENSATEG00000025125)	ENSATEG00000025126	ENSATEG00000027622	ENSATEG00000025127	nudt3b (ENSATEG00000025128)	rps10 (ENSATEG00000029580)	pacsin1b (ENSATEG00000025130) ##22	SPDEF (ENSATEG00000025131)	ilrun (ENSATEG00000025132)	SNRPC (ENSATEG00000025133)	ENSATEG00000025134	ENSATEG00000025135	phc2b (ENSATEG00000025136)	ENSATEG00000025137	ENSATEG00000025138	padi2 (ENSATEG00000025139)	ENSATEG00000025140	ENSATEG00000025141	ENSATEG00000025142	ENSATEG00000025143	ENSATEG00000025144	ENSATEG00000025145
Siamese fighting fish	MODERN SPECIES	16	ENSBSLG00000001639	ARHGEF10L (ENSBSLG00000001383)	ENSBSLG00000000909	ENSBSLG00000000796	ENSBSLG00000000792	RNF207 (ENSBSLG00000000785)	agtrap (ENSBSLG00000000774)	draxina (ENSBSLG00000000769)	PANK4 (ENSBSLG00000000709)	ENSBSLG00000000673	ENSBSLG00000000666	ENSBSLG00000000644	ENSBSLG00000000627	ENSBSLG00000000620	rps10 (ENSBSLG00000000608)	pacsin1b (ENSBSLG00000000589) ##22	SPDEF (ENSBSLG00000000578)	ilrun (ENSBSLG00000000565)	snrpc (ENSBSLG00000000549)	ENSBSLG00000000514	ENSBSLG00000000485	phc2b (ENSBSLG00000025621)	phc2b (ENSBSLG00000025601)	SLC2A1 (ENSBSLG00000025597)	SLC2A1 (ENSBSLG00000025474)	RAP1GAP (ENSBSLG00000025287)	padi2 (ENSBSLG00000025259)	ENSBSLG00000025249	ENSBSLG00000025243	ENSBSLG00000025234	ENSBSLG00000024843
Eupercaria	ANCESTRAL SPECIES		ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT01010000223242	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00390000013981.b	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000177480.b	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b	ENSGT00390000008414.g
Eupecaria_A	ANCESTRAL SPECIES		ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT01010000223242	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00390000013981.b	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000177480.b	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b	ENSGT00390000008414.g
Ballan wrasse	MODERN SPECIES	34	ENSLBEG00000024791	tnni1b (ENSLBEG00000024764)	csrp1b (ENSLBEG00000024634)	NAV1 (ENSLBEG00000024475)	mybphb (ENSLBEG00000024428)	SYT2 (ENSLBEG00000024399)	ENSLBEG00000024372	ENSLBEG00000024358	ENSLBEG00000024254	ENSLBEG00000024164	ENSLBEG00000024125	igfn1.1 (ENSLBEG00000024087)	GRM4 (ENSLBEG00000024040)	nudt3b (ENSLBEG00000024017)	rps10 (ENSLBEG00000023993)	pacsin1b (ENSLBEG00000023960) ##22	SPDEF (ENSLBEG00000023927)	ilrun (ENSLBEG00000023908)	snrpc (ENSLBEG00000023881)	ANKS1A (ENSLBEG00000023806)	ENSLBEG00000023772	phc2b (ENSLBEG00000023688)	SLC2A1 (ENSLBEG00000023635)	RAP1GAP (ENSLBEG00000023420)
Eupecaria_B	ANCESTRAL SPECIES	2	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT01010000223242	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00390000013981.b	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000177480.b	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b	ENSGT00390000008414.g
Perciformes	ANCESTRAL SPECIES		ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT01010000223242	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00390000013981.b	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000177480.b	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b	ENSGT00940000176162
Cottioidei	ANCESTRAL SPECIES		ENSGT00940000154709.a.b.a.a	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00390000013981.b	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000177480.b	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b	ENSGT00940000176162
Lumpfish	MODERN SPECIES	20	ENSCLMG00005017083	tnni1b (ENSCLMG00005017092)	csrp1b (ENSCLMG00005017095)	ENSCLMG00005017104	mybphb (ENSCLMG00005017109)	SYT2 (ENSCLMG00005017115)	ENSCLMG00005017117	zgc:66479 (ENSCLMG00005017119)	ENSCLMG00005017123	ENSCLMG00005017124	ENSCLMG00005017127	igfn1.1 (ENSCLMG00005017129)	GRM4 (ENSCLMG00005017130)	nudt3b (ENSCLMG00005017132)	rps10 (ENSCLMG00005017133)	pacsin1b (ENSCLMG00005017138) ##22	SPDEF (ENSCLMG00005017240)	ilrun (ENSCLMG00005017242)	snrpc (ENSCLMG00005017244)	ENSCLMG00005017246	ENSCLMG00005017247	ENSCLMG00005017248	phc2b (ENSCLMG00005017250)	SLC2A1 (ENSCLMG00005017260)	RAP1GAP (ENSCLMG00005018097)	padi2 (ENSCLMG00005018204)	LRIG2 (ENSCLMG00005018249)	MAGI3 (ENSCLMG00005000097)	ENSCLMG00005000131	ENSCLMG00005000156	PLXNA2 (ENSCLMG00005000225)
Stickleback	MODERN SPECIES	17	smpd2a (ENSGACG00000005132)	PKP1 (ENSGACG00000005123)	ENSGACG00000005105	tnni1b (ENSGACG00000005095)	csrp1b (ENSGACG00000005056)	NAV1 (ENSGACG00000005034)	mybphb (ENSGACG00000005023)	SYT2 (ENSGACG00000005015)	ENSGACG00000005005	ENSGACG00000005003	ENSGACG00000004994	igfn1.1 (ENSGACG00000004985)	GRM4 (ENSGACG00000004954)	nudt3b (ENSGACG00000004941)	rps10 (ENSGACG00000004926)	pacsin1b (ENSGACG00000004918) ##22	SPDEF (ENSGACG00000004912)	ilrun (ENSGACG00000004904)	snrpc (ENSGACG00000004899)	ENSGACG00000004889	ENSGACG00000004880	phc2b (ENSGACG00000004874)	SLC2A1 (ENSGACG00000004850)	RAP1GAP (ENSGACG00000004819)	padi2 (ENSGACG00000004797)	ENSGACG00000004791	ENSGACG00000004789	MAGI3 (ENSGACG00000004771)	ENSGACG00000004768	ENSGACG00000004759	ENSGACG00000004756
Perciformes_a	ANCESTRAL SPECIES	5	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT01010000223242	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000178767	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a.j.a	ENSGT00940000161110.a.a	ENSGT00940000164219	ENSGT00390000008414.g	ENSGT01050000244850.C.b.u.b
Pike perch	MODERN SPECIES	17	ENSSLUG00000023907	tnni1b (ENSSLUG00000023922)	csrp1b (ENSSLUG00000023929)	NAV1 (ENSSLUG00000023954)	ENSSLUG00000024004	mybphb (ENSSLUG00000024013)	SYT2 (ENSSLUG00000024032)	ENSSLUG00000024038	ENSSLUG00000024054	ENSSLUG00000024095	ENSSLUG00000024134	igfn1.1 (ENSSLUG00000024147)	GRM4 (ENSSLUG00000024152)	nudt3b (ENSSLUG00000024156)	rps10 (ENSSLUG00000024159)	pacsin1b (ENSSLUG00000024170) ##22	SPDEF (ENSSLUG00000024234)	ilrun (ENSSLUG00000024241)	snrpc (ENSSLUG00000024246)	ANKS1A (ENSSLUG00000024247)	ENSSLUG00000024252	phc2b (ENSSLUG00000024259)	SLC2A1 (ENSSLUG00000024326)	RAP1GAP (ENSSLUG00000024656)	padi2 (ENSSLUG00000024676)	LRIG2 (ENSSLUG00000024695)	ENSSLUG00000024702	MAGI3 (ENSSLUG00000024710)	ENSSLUG00000024717	ENSSLUG00000005189	PLXNA2 (ENSSLUG00000005461)
Channel bull blenny	MODERN SPECIES	19	ENSCGOG00000000737	tnni1b (ENSCGOG00000000746)	csrp1b (ENSCGOG00000000758)	NAV1 (ENSCGOG00000000826)	mybphb (ENSCGOG00000000926)	SYT2 (ENSCGOG00000000933)	ENSCGOG00000000934	ENSCGOG00000000935	ENSCGOG00000000937	ENSCGOG00000000946	ENSCGOG00000000952	igfn1.1 (ENSCGOG00000000956)	GRM4 (ENSCGOG00000000991)	nudt3b (ENSCGOG00000001261)	rps10 (ENSCGOG00000001296)	pacsin1b (ENSCGOG00000001328) ##22	SPDEF (ENSCGOG00000001350)	ilrun (ENSCGOG00000001363)	snrpc (ENSCGOG00000001364)	ENSCGOG00000001374	TCP11X1 (ENSCGOG00000001388)	phc2b (ENSCGOG00000001402)	SLC2A1 (ENSCGOG00000001421)	RAP1GAP (ENSCGOG00000001509)	padi2 (ENSCGOG00000002087)	LRIG2 (ENSCGOG00000002220)	MAGI3 (ENSCGOG00000002256)	ENSCGOG00000002260	ENSCGOG00000002266	PLXNA2 (ENSCGOG00000002294)	ENSCGOG00000004640
Eupecaria_C	ANCESTRAL SPECIES		ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT01010000223242	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00390000013981.b	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b	ENSGT00390000008414.g	ENSGT01050000244850.C.b.u.b
Gilthead seabream	MODERN SPECIES	20	ENSSAUG00010026540	ENSSAUG00010026537	tnni1b (ENSSAUG00010026535)	csrp1b (ENSSAUG00010026534)	NAV1 (ENSSAUG00010026401)	mybphb (ENSSAUG00010026361)	SYT2 (ENSSAUG00010026359)	ENSSAUG00010026358	ENSSAUG00010026357	ENSSAUG00010026355	ENSSAUG00010026348	igfn1.1 (ENSSAUG00010026345)	GRM4 (ENSSAUG00010026332)	nudt3b (ENSSAUG00010026327)	rps10 (ENSSAUG00010026324)	pacsin1b (ENSSAUG00010026293) ##22	SPDEF (ENSSAUG00010026285)	ilrun (ENSSAUG00010026284)	snrpc (ENSSAUG00010026281)	ENSSAUG00010026261	ENSSAUG00010026255	phc2b (ENSSAUG00010026250)	SLC2A1 (ENSSAUG00010026058)	RAP1GAP (ENSSAUG00010025470)	padi2 (ENSSAUG00010025461)	LRIG2 (ENSSAUG00010025458)	MAGI3 (ENSSAUG00010025455)	ENSSAUG00010025452	ENSSAUG00010025450	ENSSAUG00010025449	ENSSAUG00010025447
Eupercaria_incertae_sedis	ANCESTRAL SPECIES		ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT01010000223242	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00390000013981.b	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00940000161110.a.a	ENSGT00940000163460.a.b	ENSGT00390000008414.g	ENSGT01050000244850.C.b.u.b
European seabass	MODERN SPECIES	10	ENSDLAG00005030074	tnni1b (ENSDLAG00005023229)	CSRP1 (ENSDLAG00005023237)	ENSDLAG00005023257	ENSDLAG00005023560	mybphb (ENSDLAG00005023570)	ENSDLAG00005023606	ENSDLAG00005030077	ENSDLAG00005004437	ENSDLAG00005004587	ENSDLAG00005027867	ENSDLAG00005004718	ENSDLAG00005004899	nudt3b (ENSDLAG00005006096)	rps10 (ENSDLAG00005006104)	pacsin1b (ENSDLAG00005006128) ##22	SPDEF (ENSDLAG00005006255)	ilrun (ENSDLAG00005031350)	SNRPC (ENSDLAG00005006306)	ENSDLAG00005006317	ENSDLAG00005006364	phc2b (ENSDLAG00005006380)	SLC2A1 (ENSDLAG00005006464)	ENSDLAG00005031769	ENSDLAG00005033449	padi2 (ENSDLAG00005008236)	ENSDLAG00005009001	ENSDLAG00005033529	ENSDLAG00005009111	ENSDLAG00005033913	ENSDLAG00005009284
Large yellow croaker	MODERN SPECIES	478	ENSLCRG00005019543	tnni1b (ENSLCRG00005019546)	csrp1b (ENSLCRG00005019571)	NAV1 (ENSLCRG00005019619)	mybphb (ENSLCRG00005019916)	SYT2 (ENSLCRG00005019919)	ENSLCRG00005019920	ENSLCRG00005019931	ENSLCRG00005019937	ENSLCRG00005019945	ENSLCRG00005019958	igfn1.1 (ENSLCRG00005019960)	GRM4 (ENSLCRG00005019967)	nudt3b (ENSLCRG00005020741)	rps10 (ENSLCRG00005020747)	pacsin1b (ENSLCRG00005020820) ##22	SPDEF (ENSLCRG00005020990)	ilrun (ENSLCRG00005020992)	snrpc (ENSLCRG00005020993)	ENSLCRG00005020996	ENSLCRG00005020998	phc2b (ENSLCRG00005021006)	SLC2A1 (ENSLCRG00005021016)	RAP1GAP (ENSLCRG00005021812)	padi2 (ENSLCRG00005022670)	LRIG2 (ENSLCRG00005022679)	padi2 (ENSLCRG00005022702)	MAGI3 (ENSLCRG00005022768)	ENSLCRG00005022771	ENSLCRG00005022776	ENSLCRG00005022778
Tetraodontidae	ANCESTRAL SPECIES	1						ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00940000155806.c.b	ENSGT00940000154964.y.a	ENSGT00940000156792.g.a	ENSGT00940000156138.d	ENSGT00940000153217	ENSGT00940000158791	ENSGT00940000156496.a.a	ENSGT00390000009166	ENSGT00950000182956.b.b.b.e.a	ENSGT00940000158771	ENSGT01030000234555.a.a.b.a.b.a.c.p	ENSGT01030000234555.a.a.b.a.b.b
Tetraodon	MODERN SPECIES	2	KIF21B (ENSTNIG00000007259)	ENSTNIG00000006794	srpk1b (ENSTNIG00000006793)	ENSTNIG00000000548	NAV1 (ENSTNIG00000005700)	mybphb (ENSTNIG00000005699)	SYT2 (ENSTNIG00000006797)	ENSTNIG00000006796	ENSTNIG00000006795	ENSTNIG00000000349	ENSTNIG00000000619	igfn1.1 (ENSTNIG00000019483)	GRM4 (ENSTNIG00000018312)	nudt3b (ENSTNIG00000002242)	rps10 (ENSTNIG00000018311)	pacsin1b (ENSTNIG00000018310) ##22	SPDEF (ENSTNIG00000018309)	ilrun (ENSTNIG00000018308)	snrpc (ENSTNIG00000018307)	ENSTNIG00000018306	phc2b (ENSTNIG00000018305)	SLC2A1 (ENSTNIG00000018304)	ENSTNIG00000018302	appl1 (ENSTNIG00000018301)	RAP1GAP (ENSTNIG00000018303)	padi2 (ENSTNIG00000018300)	LRIG2 (ENSTNIG00000018299)	MAGI3 (ENSTNIG00000018298)	ENSTNIG00000001309	smpd2a (ENSTNIG00000018297)	tead3b (ENSTNIG00000018296)
Fugu	MODERN SPECIES	10	mybphb (ENSTRUG00000000373)	ENSTRUG00000026836	SYT2 (ENSTRUG00000000406)	ENSTRUG00000027741	ENSTRUG00000024211	ENSTRUG00000002032	ENSTRUG00000031787	ENSTRUG00000026564	igfn1.1 (ENSTRUG00000003182)	ENSTRUG00000025395	ENSTRUG00000031554	ENSTRUG00000031695	nudt3 (ENSTRUG00000029707)	ENSTRUG00000032660	rps10 (ENSTRUG00000027066)	pacsin1b (ENSTRUG00000001255) ##22	SPDEF (ENSTRUG00000001430)	ilrun (ENSTRUG00000001482)	snrpc (ENSTRUG00000031289)	ENSTRUG00000028103	ENSTRUG00000029626	ENSTRUG00000027483	ENSTRUG00000029988	phc2b (ENSTRUG00000001888)	SLC2A1 (ENSTRUG00000002051)	RAP1GAP (ENSTRUG00000018101)	ENSTRUG00000030946	padi2 (ENSTRUG00000018111)	LRIG2 (ENSTRUG00000018129)	MAGI3 (ENSTRUG00000018140)	ENSTRUG00000027119
Pinecone sodierfish	MODERN SPECIES	19	ENSMMDG00005001048	csrp1b (ENSMMDG00005001050)	NAV1 (ENSMMDG00005001052)	ENSMMDG00005001053	mybphb (ENSMMDG00005001055)	SYT2 (ENSMMDG00005001062)	ENSMMDG00005001064	zgc:66479 (ENSMMDG00005001066)	ENSMMDG00005001074	ENSMMDG00005001079	ENSMMDG00005001085	igfn1.1 (ENSMMDG00005001096)	GRM4 (ENSMMDG00005001100)	nudt3b (ENSMMDG00005001114)	rps10 (ENSMMDG00005001117)	pacsin1b (ENSMMDG00005001120) ##22	SPDEF (ENSMMDG00005001126)	ilrun (ENSMMDG00005001152)	snrpc (ENSMMDG00005001162)	ANKS1A (ENSMMDG00005001177)	ENSMMDG00005001200	phc2b (ENSMMDG00005001239)	SLC2A1 (ENSMMDG00005001277)	RAP1GAP (ENSMMDG00005001415)	padi2 (ENSMMDG00005001496)	LRIG2 (ENSMMDG00005001660)	ENSMMDG00005001665	ENSMMDG00005001676	ENSMMDG00005001698	ENSMMDG00005001710	ENSMMDG00005001715
Cod	MODERN SPECIES	4	tnni1b (ENSGMOG00000015185)	csrp1b (ENSGMOG00000015173)	ENSGMOG00000015079	ENSGMOG00000028764	mybphb (ENSGMOG00000015057)	ENSGMOG00000025882	ENSGMOG00000028656	ENSGMOG00000014996	ENSGMOG00000014978	ENSGMOG00000014926	ENSGMOG00000014887	ENSGMOG00000006162	nudt3b (ENSGMOG00000026842)	rps10 (ENSGMOG00000000113)	nudt3b (ENSGMOG00000031793)	pacsin1b (ENSGMOG00000000108) ##22	SPDEF (ENSGMOG00000000105)	ENSGMOG00000000101	ENSGMOG00000010859	ENSGMOG00000025779	ENSGMOG00000022253	GLUT1 (ENSGMOG00000011678)	CPNE1 (ENSGMOG00000011530)	ENSGMOG00000009599	RBM39 (ENSGMOG00000017567)	ENSGMOG00000029915	ENSGMOG00000009106	isy1 (ENSGMOG00000005635)	ENSGMOG00000007798	mkrn2 (ENSGMOG00000018490)	ENSGMOG00000035527
Protacanthopterygii	ANCESTRAL SPECIES	24	ENSGT01030000234588.a.a.a.a	ENSGT00940000156777.c	ENSGT01010000223242	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00390000013981.b	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918.g.a	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.k.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	202													ENSGT01030000234648.a.b.a.a.a.f.b.h	ENSGT00940000157882.i.a	ENSGT00440000034918.g.a.b	ENSGT00950000182973.a.c.a.c.a ##22	ENSGT00940000157549.a.b	ENSGT00490000043415.k.b.a	ENSGT00730000110997.j	ENSGT00940000158156.b.b.d	ENSGT01090000260263.a.a	ENSGT00550000074784.b.e.a	ENSGT01090000260263.b	ENSGT00550000074784.b.e.b.a	ENSGT00940000156624.c	ENSGT00940000156780	ENSGT00940000156669.b.i	ENSGT00940000158385.i	ENSGT00530000063735.a.b.d	ENSGT01100000263491.a.b.b.c.b.k.b	ENSGT01100000263491.a.b.b.c.b.k.a.b
Huchen	MODERN SPECIES	1014													ENSHHUG00000050029	nudt3b (ENSHHUG00000050033)	rps10 (ENSHHUG00000050060)	pacsin1b (ENSHHUG00000050095) ##22	SPDEF (ENSHHUG00000050147)	ilrun (ENSHHUG00000050149)	snrpc (ENSHHUG00000050158)	atp6ap1la (ENSHHUG00000050168)	rps23 (ENSHHUG00000050177)	ENSHHUG00000050212	appl1 (ENSHHUG00000050224)	ENSHHUG00000050419	ENSHHUG00000050422	TECR (ENSHHUG00000050423)
Salmoninae_a	ANCESTRAL SPECIES	25	ENSGT00940000158771.c	ENSGT00950000182956.b.b.b.e.a.i.a	ENSGT00390000009166	ENSGT00940000156735.c.e	ENSGT00940000154709.a.b.a.a	ENSGT01030000234588.a.a.a.a.c	ENSGT00940000156777.c.a	ENSGT01010000223242	ENSGT00940000156637.b.c	ENSGT00940000158040.d.a	ENSGT00940000157586.e.h	ENSGT00940000166065.a.a	ENSGT01030000234648.a.b.a.a.a.f.b.h	ENSGT00940000157882.i.a	ENSGT00440000034918.g.a.b	ENSGT00950000182973.a.c.a.c.a ##22	ENSGT00940000157549.a.b	ENSGT00490000043415.k.b.a	ENSGT00730000110997.j	ENSGT00940000158156.b.b.d	ENSGT00550000074784.b.e.b.a.b	ENSGT00940000156624.c	ENSGT00940000156780	ENSGT00940000156669.b.i	ENSGT00940000158385.i	ENSGT00530000063735.a.b.d	ENSGT01100000263491.a.b.b.c.b.k.b	ENSGT01100000263491.a.b.b.c.b.k.a.b	ENSGT01030000234555.a.a.b.a.a.a.b.p	ENSGT00940000155264.h	ENSGT00990000203541.a.a.b.h.g.a
Salmo	ANCESTRAL SPECIES	6	ENSGT01030000234555.a.a.b.a.b.a.c.q	ENSGT00940000158771.c	ENSGT00950000182956.b.b.b.e.a.i.a	ENSGT00390000009166	ENSGT00940000156735.c.e	ENSGT00940000154709.a.b.a.a	ENSGT01030000234588.a.a.a.a.c	ENSGT00940000156777.c.a	ENSGT00940000156637.b.c	ENSGT00940000158040.d.a	ENSGT00940000157586.e.h	ENSGT00940000166065.a.a	ENSGT01030000234648.a.b.a.a.a.f.b.h	ENSGT00940000157882.i.a	ENSGT00440000034918.g.a.b	ENSGT00950000182973.a.c.a.c.a ##22	ENSGT00940000157549.a.b	ENSGT00490000043415.k.b.a	ENSGT00730000110997.j	ENSGT00940000158156.b.b.d	ENSGT00550000074784.b.e.b.a.b	ENSGT01090000260263.a.a	ENSGT00550000074784.b.e.a	ENSGT00940000156624.c	ENSGT00940000156780	ENSGT00940000156669.b.i	ENSGT00940000158385.i	ENSGT00530000063735.a.b.d	ENSGT01100000263491.a.b.b.c.b.k.b.b	ENSGT01100000263491.a.b.b.c.b.k.a.b	ENSGT01030000234555.a.a.b.a.a.a.b.p
Atlantic salmon	MODERN SPECIES	14	ENSSSAG00000106632	ENSSSAG00000109092	tead3b (ENSSSAG00000077012)	ENSSSAG00000077001	PKP1 (ENSSSAG00000076999)	ENSSSAG00000076994	tnni1b (ENSSSAG00000115603)	csrp1b (ENSSSAG00000102520)	NAV1 (ENSSSAG00000075240)	mybphb (ENSSSAG00000075107)	ENSSSAG00000075099	ENSSSAG00000108666	ENSSSAG00000074204	nudt3b (ENSSSAG00000084577)	rps10 (ENSSSAG00000074172)	pacsin1b (ENSSSAG00000090207) ##22	SPDEF (ENSSSAG00000074163)	ilrun (ENSSSAG00000007069)	RU1C (ENSSSAG00000074153)	atp6ap1la (ENSSSAG00000074146)	rps23 (ENSSSAG00000007090)	appl1 (ENSSSAG00000073962)	HESX1 (ENSSSAG00000110298)	il17rd (ENSSSAG00000073937)	ARHGEF3 (ENSSSAG00000073898)	ENSSSAG00000110320	ENSSSAG00000087797	ENSSSAG00000088014	ENSSSAG00000118251	srpk1b (ENSSSAG00000073880)	ENSSSAG00000073877
River trout	MODERN SPECIES	7	ENSSTUG00000021246	TEAD3 (ENSSTUG00000021317)	smpd2a (ENSSTUG00000021445)	PKP1 (ENSSTUG00000021463)	ENSSTUG00000021480	tnni1b (ENSSTUG00000021493)	csrp1b (ENSSTUG00000021573)	NAV1 (ENSSTUG00000021698)	mybphb (ENSSTUG00000025361)	SYT2 (ENSSTUG00000025631)	ENSSTUG00000025641	ENSSTUG00000025681	GRM4 (ENSSTUG00000025710)	nudt3b (ENSSTUG00000026003)	rps10 (ENSSTUG00000026057)	pacsin1b (ENSSTUG00000026171) ##22	SPDEF (ENSSTUG00000026287)	ilrun (ENSSTUG00000026291)	snrpc (ENSSTUG00000026313)	atp6ap1la (ENSSTUG00000026331)	rps23 (ENSSTUG00000026351)	ENSSTUG00000026413	appl1 (ENSSTUG00000026537)	il17rd (ENSSTUG00000027280)	arhgef3 (ENSSTUG00000027320)	ENSSTUG00000027439	ENSSTUG00000027454	ENSSTUG00000027458	ADORA1 (ENSSTUG00000027464)	srpk1b (ENSSTUG00000027474)	LHFPL5 (ENSSTUG00000027502)
Oncorhynchus	ANCESTRAL SPECIES	5	ENSGT00940000158771.c	ENSGT00950000182956.b.b.b.e.a.i.a	ENSGT00390000009166	ENSGT00940000156735.c.e	ENSGT00940000154709.a.b.a.a	ENSGT01030000234588.a.a.a.a.c	ENSGT00940000156777.c.a	ENSGT01010000223242	ENSGT00940000156637.b.c	ENSGT00940000158040.d.a	ENSGT00940000157586.e.h	ENSGT00940000166065.a.a	ENSGT01030000234648.a.b.a.a.a.f.b.h	ENSGT00940000157882.i.a	ENSGT00440000034918.g.a.b	ENSGT00950000182973.a.c.a.c.a ##22	ENSGT00940000157549.a.b	ENSGT00490000043415.k.b.a	ENSGT00730000110997.j	ENSGT00940000158156.b.b.d	ENSGT00550000074784.b.e.a	ENSGT00940000156624.c	ENSGT00940000156669.b.i	ENSGT00940000158385.i	ENSGT00530000063735.a.b.d	ENSGT01100000263491.a.b.b.c.b.k.b	ENSGT01100000263491.a.b.b.c.b.k.a.b.a	ENSGT01030000234555.a.a.b.a.a.a.b.p	ENSGT00940000155264.h	ENSGT00990000203541.a.a.b.h.h	ENSGT00940000159650.e
Oncorhynchus_a	ANCESTRAL SPECIES	4	ENSGT01030000234555.a.a.b.a.b.a.c.q	ENSGT00940000158771.c	ENSGT00950000182956.b.b.b.e.a.i.a	ENSGT00390000009166	ENSGT00940000156735.c.e	ENSGT00940000154709.a.b.a.a	ENSGT01030000234588.a.a.a.a.c	ENSGT00940000156777.c.a	ENSGT00940000156637.b.c	ENSGT00940000158040.d.a	ENSGT00940000157586.e.h	ENSGT00940000166065.a.a	ENSGT01030000234648.a.b.a.a.a.f.b.h	ENSGT00940000157882.i.a	ENSGT00440000034918.g.a.b	ENSGT00950000182973.a.c.a.c.a ##22	ENSGT00940000157549.a.b	ENSGT00490000043415.k.b.a	ENSGT00730000110997.j	ENSGT00940000158156.b.b.d	ENSGT00550000074784.b.e.a	ENSGT00940000156624.c	ENSGT00940000156669.b.i	ENSGT00940000158385.i	ENSGT00530000063735.a.b.d	ENSGT01100000263491.a.b.b.c.b.k.b	ENSGT01100000263491.a.b.b.c.b.k.a.b.a	ENSGT01030000234555.a.a.b.a.a.a.b.p	ENSGT00990000203541.a.a.b.h.h	ENSGT00940000159650.e	ENSGT00940000156194.m.b.d
Chinook salmon	MODERN SPECIES	31	ADORA3 (ENSOTSG00005029644)	ENSOTSG00005029629	tead3b (ENSOTSG00005041977)	smpd2a (ENSOTSG00005041975)	PKP1 (ENSOTSG00005041973)	ENSOTSG00005041971	tnni1b (ENSOTSG00005041969)	csrp1b (ENSOTSG00005041968)	NAV1 (ENSOTSG00005041561)	mybphb (ENSOTSG00005041560)	SYT2 (ENSOTSG00005041559)	ENSOTSG00005041558	GRM4 (ENSOTSG00005041557)	nudt3b (ENSOTSG00005041556)	rps10 (ENSOTSG00005041555)	pacsin1b (ENSOTSG00005041553) ##22	SPDEF (ENSOTSG00005041552)	ilrun (ENSOTSG00005041551)	snrpc (ENSOTSG00005041549)	atp6ap1la (ENSOTSG00005041548)	rps23 (ENSOTSG00005041547)	appl1 (ENSOTSG00005038445)	il17rd (ENSOTSG00005037532)	arhgef3 (ENSOTSG00005035052)	ENSOTSG00005035032	ENSOTSG00005035030	ADORA1 (ENSOTSG00005035029)	ENSOTSG00005035027	LHFPL5 (ENSOTSG00005035025)	KIF21B (ENSOTSG00005029760)	cpne5b (ENSOTSG00005029735)
Coho salmon	MODERN SPECIES	25	ADORA3 (ENSOKIG00005005688)	ENSOKIG00005005644	TEAD3 (ENSOKIG00005005515)	smpd2a (ENSOKIG00005005468)	PKP1 (ENSOKIG00005005456)	ENSOKIG00005005450	tnni1b (ENSOKIG00005005423)	csrp1b (ENSOKIG00005005410)	NAV1 (ENSOKIG00005003723)	mybphb (ENSOKIG00005003578)	SYT2 (ENSOKIG00005003554)	ENSOKIG00005003545	GRM4 (ENSOKIG00005003510)	nudt3b (ENSOKIG00005003491)	rps10 (ENSOKIG00005003466)	pacsin1b (ENSOKIG00005003426) ##22	SPDEF (ENSOKIG00005003413)	ilrun (ENSOKIG00005003404)	snrpc (ENSOKIG00005003398)	atp6ap1la (ENSOKIG00005003393)	ENSOKIG00005003379	ENSOKIG00005003348	APPL1 (ENSOKIG00005002587)	HESX1 (ENSOKIG00005002428)	il17rd (ENSOKIG00005002393)	arhgef3 (ENSOKIG00005002207)	ENSOKIG00005002113	ENSOKIG00005002102	ADORA1 (ENSOKIG00005002089)	LHFPL5 (ENSOKIG00005002055)	KIF21B (ENSOKIG00005001114)
Rainbow trout	MODERN SPECIES	28	ENSOMYG00000072636	PKP1 (ENSOMYG00000032188)	ENSOMYG00000032181	tnni1b (ENSOMYG00000032167)	csrp1b (ENSOMYG00000032147)	ENSOMYG00000059254	NAV1 (ENSOMYG00000031075)	mybphb (ENSOMYG00000030760)	ENSOMYG00000060994	ENSOMYG00000030699	ENSOMYG00000030692	ENSOMYG00000030686	ENSOMYG00000030638	nudt3b (ENSOMYG00000030583)	rps10 (ENSOMYG00000030562)	pacsin1b (ENSOMYG00000030525) ##22	SPDEF (ENSOMYG00000030457)	ilrun (ENSOMYG00000030435)	ENSOMYG00000072759	SNRPC (ENSOMYG00000030428)	atp6ap1la (ENSOMYG00000030422)	rps23 (ENSOMYG00000030388)	appl1 (ENSOMYG00000029294)	il17rd (ENSOMYG00000028347)	ENSOMYG00000028035	ENSOMYG00000027883	ENSOMYG00000051471	ENSOMYG00000027831	ENSOMYG00000061860	ENSOMYG00000027818	srpk1b (ENSOMYG00000027803)
Salmoninae	ANCESTRAL SPECIES	42	ENSGT00940000156735.c.f	ENSGT01030000234588.a.a.a.a.d	ENSGT00940000156777.c.b	ENSGT00940000156637.b.d	ENSGT00940000158040.d.b	ENSGT00940000157586.e.g	ENSGT00940000166065.a.b	ENSGT00390000013981.b	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b.g	ENSGT00940000157882.i.b	ENSGT00440000034918.g.a.a	ENSGT00950000182973.a.c.a.c.b ##22	ENSGT00940000157549.a.a	ENSGT00490000043415.k.b.b
Huchen	MODERN SPECIES	325	ENSHHUG00000048538	ENSHHUG00000048544	ENSHHUG00000048548	ENSHHUG00000048553	mybphb (ENSHHUG00000048571)	SYT2 (ENSHHUG00000048665)	ENSHHUG00000048677	zgc:66479 (ENSHHUG00000048681)	ENSHHUG00000048685	ENSHHUG00000048698	ENSHHUG00000048708	igfn1.1 (ENSHHUG00000048756)	ENSHHUG00000048778	nudt3b (ENSHHUG00000048787)	rps10 (ENSHHUG00000048807)	pacsin1b (ENSHHUG00000048839) ##22	SPDEF (ENSHHUG00000048871)	ilrun (ENSHHUG00000048875)	ENSHHUG00000048891	ENSHHUG00000048895	ENSHHUG00000048897
Salmoninae_a	ANCESTRAL SPECIES	29	ENSGT00940000156735.c.f	ENSGT01030000234588.a.a.a.a.d	ENSGT00940000156777.c.b	ENSGT00940000156637.b.d	ENSGT00940000158040.d.b	ENSGT00940000157586.e.g	ENSGT00940000166065.a.b	ENSGT00390000013981.b	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b.g	ENSGT00940000157882.i.b	ENSGT00440000034918.g.a.a	ENSGT00950000182973.a.c.a.c.b ##22	ENSGT00940000157549.a.a	ENSGT00490000043415.k.b.b	ENSGT00550000074784.a.b	ENSGT00940000156550.a	ENSGT00940000156624.d	ENSGT00390000012588	ENSGT00530000065281	ENSGT01100000263475.f.a.d.a.a.b.b	ENSGT00940000156669.b.j	ENSGT00940000158385.j	ENSGT00530000063735.a.b.c	ENSGT00390000012411	ENSGT00940000164807.G.a.b.e.b	ENSGT01100000263533.b.b.b.a.a.a.a.c.b.a.b	ENSGT01100000263491.a.b.b.c.b.k.a.a.b.b.b
Salmo	ANCESTRAL SPECIES	33	ENSGT00940000156735.c.f	ENSGT01030000234588.a.a.a.a.d	ENSGT00940000156777.c.b	ENSGT00940000156637.b.d	ENSGT00940000158040.d.b	ENSGT00940000157586.e.g	ENSGT00940000166065.a.b	ENSGT00390000013981.b	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b.g	ENSGT00940000157882.i.b	ENSGT00440000034918.g.a.a	ENSGT00950000182973.a.c.a.c.b ##22	ENSGT00940000157549.a.a	ENSGT00490000043415.k.b.b	ENSGT00940000158156.b.b.c	ENSGT01090000260263.a.b	ENSGT00550000074784.b.e.b.b	ENSGT00940000156550.a	ENSGT00940000156624.d	ENSGT00390000012588	ENSGT00530000065281	ENSGT01100000263475.f.a.d.a.a.b.b	ENSGT00940000156669.b.j	ENSGT00940000158385.j	ENSGT00530000063735.a.b.c	ENSGT00390000012411	ENSGT00940000164807.G.a.b.e.b
River trout	MODERN SPECIES	5	ENSSTUG00000019906	tead3b (ENSSTUG00000019715)	PKP1 (ENSSTUG00000019675)	tnni1b (ENSSTUG00000019641)	csrp1b (ENSSTUG00000019617)	NAV1 (ENSSTUG00000019368)	mybphb (ENSSTUG00000019146)	SYT2 (ENSSTUG00000019102)	zgc:66479 (ENSSTUG00000019083)	ENSSTUG00000018979	ENSSTUG00000018915	ENSSTUG00000018634	GRM4 (ENSSTUG00000018468)	nudt3b (ENSSTUG00000018426)	rps10 (ENSSTUG00000018394)	pacsin1b (ENSSTUG00000018306) ##22	SPDEF (ENSSTUG00000018285)	ENSSTUG00000018276	ilrun (ENSSTUG00000018263)	ENSSTUG00000018256	ENSSTUG00000018255	atp6ap1la (ENSSTUG00000018243)	ENSSTUG00000018238	rps23 (ENSSTUG00000018173)	ASB14 (ENSSTUG00000018150)	appl1 (ENSSTUG00000016822)	irak1bp1 (ENSSTUG00000016729)	ENSSTUG00000016724	ENSSTUG00000016713	il17rd (ENSSTUG00000016636)	arhgef3 (ENSSTUG00000015877)
Atlantic salmon	MODERN SPECIES	3	PKP1 (ENSSSAG00000071648)	TNNI1 (ENSSSAG00000071655)	csrp1 (ENSSSAG00000071677)	NAV1 (ENSSSAG00000071694)	mybphb (ENSSSAG00000071742)	ENSSSAG00000111107	ENSSSAG00000004157	zgc:66479 (ENSSSAG00000004175)	ENSSSAG00000004198	ENSSSAG00000004265	ENSSSAG00000004485	igfn1.1 (ENSSSAG00000004505)	ENSSSAG00000039813	nudt3b (ENSSSAG00000112102)	rps10 (ENSSSAG00000103389)	pacsin1b (ENSSSAG00000006799) ##22	SPDEF (ENSSSAG00000007065)	ilrun (ENSSSAG00000091907)	ENSSSAG00000112867	ENSSSAG00000059592	srpk1b (ENSSSAG00000007612)	ENSSSAG00000009801	ENSSSAG00000009852	ENSSSAG00000082539	cpne5b (ENSSSAG00000088360)	ENSSSAG00000058444	ENSSSAG00000086731	ca119 (ENSSSAG00000107955)	ENSSSAG00000015707	ENSSSAG00000040745	ENSSSAG00000015735
Oncorhynchus	ANCESTRAL SPECIES	1	ENSGT00940000156735.c.f	ENSGT01030000234588.a.a.a.a.d	ENSGT00940000156777.c.b	ENSGT00940000156637.b.d	ENSGT00940000158040.d.b	ENSGT00940000157586.e.g.a.b	ENSGT00940000166065.a.b	ENSGT00390000013981.b	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b.g	ENSGT00940000157882.i.b	ENSGT00440000034918.g.a.a	ENSGT00950000182973.a.c.a.c.b ##22	ENSGT00940000157549.a.a	ENSGT00490000043415.k.b.b	ENSGT00990000213924	ENSGT00940000158156.b.b.c	ENSGT01090000260263.a.b	ENSGT00550000074784.b.e.b.a.a	ENSGT00940000156550.a	ENSGT00940000156624.d	ENSGT00940000156780	ENSGT00390000012588	ENSGT00530000065281	ENSGT01100000263475.f.a.d.a.a.b.b	ENSGT00940000156669.b.j	ENSGT00940000158385.j	ENSGT00530000063735.a.b.c
Oncorhynchus_a	ANCESTRAL SPECIES	54	ENSGT00940000156777.c.b	ENSGT00940000156637.b.d	ENSGT00940000158040.d.b	ENSGT00940000157586.e.g.b	ENSGT01000000220204	ENSGT00940000157586.e.g.a.a	ENSGT00940000166065.a.b	ENSGT00390000013981.b	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.a.b	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b.g	ENSGT00940000157882.i.b	ENSGT00440000034918.g.a.a	ENSGT00950000182973.a.c.a.c.b ##22	ENSGT00940000157549.a.a	ENSGT00490000043415.k.b.b	ENSGT00990000213924	ENSGT00940000158156.b.b.c	ENSGT01090000260263.a.b	ENSGT00550000074784.b.e.b.a.a	ENSGT00940000156550.a	ENSGT00940000156624.d	ENSGT00940000156780	ENSGT00390000012588	ENSGT00530000065281	ENSGT01100000263475.f.a.d.a.a.b.b	ENSGT00940000156669.b.j	ENSGT00940000158385.j	ENSGT00530000063735.a.b.c
Coho salmon	MODERN SPECIES		TEAD3 (ENSOKIG00005000515)	PKP1 (ENSOKIG00005000493)	tnni1b (ENSOKIG00005000487)	csrp1b (ENSOKIG00005000477)	NAV1 (ENSOKIG00005000458)	mybphb (ENSOKIG00005000411)	SYT2 (ENSOKIG00005000389)	zgc:66479 (ENSOKIG00005000378)	ENSOKIG00005000356	ENSOKIG00005000300	ENSOKIG00005000258	igfn1.1 (ENSOKIG00005000236)	GRM4 (ENSOKIG00005000180)	nudt3b (ENSOKIG00005000119)	rps10 (ENSOKIG00005000098)	pacsin1b (ENSOKIG00005000074) ##22	SPDEF (ENSOKIG00005000031)	ilrun (ENSOKIG00005000011)	ENSOKIG00005032103	ENSOKIG00005032056	atp6ap1la (ENSOKIG00005032044)	ENSOKIG00005032021	rps23 (ENSOKIG00005031842)	ASB14 (ENSOKIG00005031770)	appl1 (ENSOKIG00005030714)	irak1bp1 (ENSOKIG00005030575)	ENSOKIG00005030563	ENSOKIG00005030558	IL17RD (ENSOKIG00005030455)	ARHGEF3 (ENSOKIG00005029910)	TASOR (ENSOKIG00005029822)
Chinook salmon	MODERN SPECIES	11	tnni1b (ENSOTSG00005001165)	csrp1b (ENSOTSG00005001169)	NAV1 (ENSOTSG00005001176)	mybphb (ENSOTSG00005001206)	ENSOTSG00005001210	SYT2 (ENSOTSG00005001217)	ENSOTSG00005001222	zgc:66479 (ENSOTSG00005001225)	ENSOTSG00005001232	ENSOTSG00005001271	ENSOTSG00005001310	igfn1.1 (ENSOTSG00005001324)	GRM4 (ENSOTSG00005001351)	nudt3b (ENSOTSG00005001515)	rps10 (ENSOTSG00005001517)	pacsin1b (ENSOTSG00005001519) ##22	SPDEF (ENSOTSG00005001521)	ilrun (ENSOTSG00005001524)	ENSOTSG00005001526	ENSOTSG00005001528	ENSOTSG00005001529	ENSOTSG00005001530	ENSOTSG00005001531	atp6ap1la (ENSOTSG00005001532)	ENSOTSG00005001535	ENSOTSG00005001537	ASB14 (ENSOTSG00005001538)	appl1 (ENSOTSG00005001556)	ENSOTSG00005004694	irak1bp1 (ENSOTSG00005004695)	ENSOTSG00005004697
Rainbow trout	MODERN SPECIES	8	csrp1 (ENSOMYG00000027036)	ENSOMYG00000049179	NAV1 (ENSOMYG00000005205)	mybphb (ENSOMYG00000005590)	ENSOMYG00000005709	ENSOMYG00000005720	zgc:66479 (ENSOMYG00000005767)	ENSOMYG00000005815	ENSOMYG00000006174	ENSOMYG00000006434	igfn1.1 (ENSOMYG00000006509)	ENSOMYG00000006672	ENSOMYG00000067513	nudt3b (ENSOMYG00000006824)	rps10 (ENSOMYG00000006863)	pacsin1b (ENSOMYG00000007012) ##22	ENSOMYG00000058362	ENSOMYG00000059957	ENSOMYG00000007125	ilrun (ENSOMYG00000007170)	ENSOMYG00000007200	ENSOMYG00000007227	ENSOMYG00000058834	atp6ap1la (ENSOMYG00000007259)	ENSOMYG00000062124	ENSOMYG00000007335	ENSOMYG00000007378	appl1 (ENSOMYG00000008084)	ENSOMYG00000008760	ENSOMYG00000008762	ENSOMYG00000008774
Northern pike	MODERN SPECIES	16	ngfb (ENSELUG00000023507)	KCNA3 (ENSELUG00000023494)	KCNA2 (ENSELUG00000023489)	KCNA10 (ENSELUG00000023484)	rplp2 (ENSELUG00000028982)	ENSELUG00000023465	ENSELUG00000023455	ENSELUG00000023438	ENSELUG00000021091	ENSELUG00000021032	ENSELUG00000020961	igfn1.1 (ENSELUG00000020910)	GRM4 (ENSELUG00000020642)	nudt3b (ENSELUG00000020596)	rps10 (ENSELUG00000020573)	pacsin1b (ENSELUG00000020536) ##22	SPDEF (ENSELUG00000001273)	ilrun (ENSELUG00000020501)	ENSELUG00000031687	snrpc (ENSELUG00000020489)	ENSELUG00000020468	ENSELUG00000021134	SYT2 (ENSELUG00000021160)	mybphb (ENSELUG00000021224)	NAV1 (ENSELUG00000021348)	csrp1b (ENSELUG00000021388)	tnni1b (ENSELUG00000021412)	ENSELUG00000021424	PKP1 (ENSELUG00000021481)	smpd2a (ENSELUG00000021534)	tead3b (ENSELUG00000021598)
Otomorpha	ANCESTRAL SPECIES	157	ENSGT00440000039564.a.a	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00940000157392.p	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.l	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00940000159065.a	ENSGT00940000163428.a.a.b
Otophysi	ANCESTRAL SPECIES	15	ENSGT00940000156617.e.a	ENSGT00990000203619.B.b	ENSGT01000000214413.b.a.b.b.b	ENSGT00940000163135	ENSGT00410000025882.a	ENSGT01000000214687	ENSGT00940000159461	ENSGT00940000159388	ENSGT00940000156238.a.a	ENSGT01020000230364.a.a.a.a.b	ENSGT01020000230364.a.a.a.b.mb	ENSGT00390000008040.bb.b	ENSGT00940000167932.a.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.l	ENSGT00940000177480.b	ENSGT00940000155806.c.b	ENSGT00730000110997	ENSGT00940000154347.a	ENSGT01030000234555.a.a.b.a.b.b	ENSGT01030000234555.a.a.b.a.b.a.c.a	ENSGT01030000234555.a.a.b.a.b.a.c.b	ENSGT00940000158771	ENSGT00950000182956.b.b.b.e.a	ENSGT00390000009166.b	ENSGT00940000156735.c	ENSGT00940000154709.a.b.a.a	ENSGT01030000234588.a.a.a.a
Characiphysae	ANCESTRAL SPECIES	104	ENSGT00940000156617.e.a	ENSGT00990000203619.B.b	ENSGT01000000214413.b.a.b.b.b	ENSGT00940000163135	ENSGT00410000025882.a	ENSGT00980000200207	ENSGT00940000159461	ENSGT00940000159388	ENSGT00940000156238.a.a	ENSGT01020000230364.a.a.a.a.b	ENSGT01020000230364.a.a.a.b.mb	ENSGT00390000008040.bb.b	ENSGT00940000167932.a.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.l	ENSGT00940000177480.b	ENSGT00940000155806.c.b	ENSGT00730000110997	ENSGT00940000154347.a	ENSGT01030000234555.a.a.b.a.b.b
Channel catfish	MODERN SPECIES	2	ENSIPUG00000000634	gnb1b (ENSIPUG00000000618)	calml6 (ENSIPUG00000000611)	ENSIPUG00000000596	ENSIPUG00000000588	MST1 (ENSIPUG00000000552)	ENSIPUG00000000544	Abhd14b (ENSIPUG00000000534)	cacna2d2a (ENSIPUG00000024893)	hyal1 (ENSIPUG00000024883)	HYAL2 (ENSIPUG00000024882)	Tusc2 (ENSIPUG00000024880)	hmga1b (ENSIPUG00000024877)	NUDT3 (ENSIPUG00000024874)	rps10 (ENSIPUG00000024872)	pacsin1b (ENSIPUG00000024866) ##22	SPDEF (ENSIPUG00000024860)	c11h6orf106 (ENSIPUG00000024857)	ENSIPUG00000024853	snrpc (ENSIPUG00000024851)	sys1 (ENSIPUG00000024848)	ENSIPUG00000024845	tulp1 (ENSIPUG00000024810)	tead3 (ENSIPUG00000024800)	ENSIPUG00000024794	pkp1 (ENSIPUG00000024791)	ENSIPUG00000024788	tnni1b (ENSIPUG00000024785)	csrp1 (ENSIPUG00000024780)	NAV1 (ENSIPUG00000024775)	mybph (ENSIPUG00000024771)
Characiphysae_b	ANCESTRAL SPECIES	114	ENSGT00940000156617.e.a	ENSGT01100000263536.B.d	ENSGT01000000214413.b.a.b.b.b	ENSGT00940000163135	ENSGT00410000025882.a	ENSGT00980000200207	ENSGT00940000159461	ENSGT00940000159388	ENSGT00940000156238.a.a	ENSGT01020000230364.a.a.a.a.b	ENSGT01020000230364.a.a.a.b.mb	ENSGT00390000008040.bb.b	ENSGT00940000167932.a.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.l	ENSGT00940000177480.b	ENSGT00940000155806.c.b	ENSGT00730000110997	ENSGT00940000154347.a	ENSGT01030000234555.a.a.b.a.b.b
Characoidei	ANCESTRAL SPECIES	177	ENSGT00940000156617.e.a	ENSGT01100000263536.B.d	ENSGT01000000214413.b.a.b.b.b	ENSGT00940000163135	ENSGT00410000025882.a	ENSGT00980000200207	ENSGT00940000159461	ENSGT00940000159388	ENSGT00940000156238.a.a	ENSGT01020000230364.a.a.a.a.b	ENSGT01020000230364.a.a.a.b.mb	ENSGT00390000008040.bb.b	ENSGT00940000167932.a.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.l	ENSGT00940000155806.c.b	ENSGT00730000110997	ENSGT00940000154347.a	ENSGT01030000234555.a.a.b.a.b.b	ENSGT01030000234555.a.a.b.a.b.a.c.a.c
Red-bellied piranha	MODERN SPECIES	140	rbm5 (ENSPNAG00000012070)	ENSPNAG00000012082	gnb1b (ENSPNAG00000002108)	CALML6 (ENSPNAG00000002119)	C3orf18 (ENSPNAG00000002132)	ENSPNAG00000002141	mst1 (ENSPNAG00000012212)	abhd14b (ENSPNAG00000002157)	cacna2d2a (ENSPNAG00000012572)	hyal1 (ENSPNAG00000012605)	HYAL2 (ENSPNAG00000012607)	tusc2a (ENSPNAG00000002326)	hmga1b (ENSPNAG00000002330)	nudt3b (ENSPNAG00000002337)	rps10 (ENSPNAG00000002350)	pacsin1b (ENSPNAG00000012686) ##22	SPDEF (ENSPNAG00000012707)	ilrun (ENSPNAG00000012734)	ANKS1A (ENSPNAG00000012766)	snrpc (ENSPNAG00000012799)	sys1 (ENSPNAG00000012817)	ENSPNAG00000012826	ENSPNAG00000012833	ENSPNAG00000002422	ADORA3 (ENSPNAG00000002423)	ENSPNAG00000007168
Mexicana tetra	MODERN SPECIES	4	ENSAMXG00000030009	gnb1b (ENSAMXG00000040710)	CALML6 (ENSAMXG00000007954)	ENSAMXG00000007915	ENSAMXG00000034146	mst1 (ENSAMXG00000007792)	ENSAMXG00000030547	abhd14b (ENSAMXG00000043158)	cacna2d2a (ENSAMXG00000007470)	hyal1 (ENSAMXG00000041352)	HYAL2 (ENSAMXG00000029279)	tusc2a (ENSAMXG00000031577)	hmga1b (ENSAMXG00000039389)	nudt3b (ENSAMXG00000043055)	rps10 (ENSAMXG00000043037)	pacsin1b (ENSAMXG00000037934) ##22	SPDEF (ENSAMXG00000033621)	ilrun (ENSAMXG00000042172)	ANKS1A (ENSAMXG00000016705)	snrpc (ENSAMXG00000032641)	sys1 (ENSAMXG00000035009)	ENSAMXG00000031459	ENSAMXG00000038612	ENSAMXG00000013451	ENSAMXG00000037152	ENSAMXG00000031217	ENSAMXG00000039349	ENSAMXG00000036826	ENSAMXG00000036368	ENSAMXG00000004314	ENSAMXG00000039314
Electric eel	MODERN SPECIES	44	SLC38A3 (ENSEEEG00000006314)	rbm5 (ENSEEEG00000006430)	ENSEEEG00000006448	gnb1b (ENSEEEG00000006458)	CALML6 (ENSEEEG00000006721)	C3orf18 (ENSEEEG00000006722)	mst1 (ENSEEEG00000006735)	abhd14b (ENSEEEG00000007167)	cacna2d2a (ENSEEEG00000007168)	hyal1 (ENSEEEG00000007170)	HYAL2 (ENSEEEG00000007171)	tusc2a (ENSEEEG00000007172)	hmga1b (ENSEEEG00000007173)	nudt3b (ENSEEEG00000007176)	rps10 (ENSEEEG00000007178)	pacsin1b (ENSEEEG00000007180) ##22	SPDEF (ENSEEEG00000007181)	ilrun (ENSEEEG00000007182)	ENSEEEG00000007183	ENSEEEG00000007184	snrpc (ENSEEEG00000007187)	ENSEEEG00000007190	ENSEEEG00000007192	ENSEEEG00000007193	ADORA3 (ENSEEEG00000007194)	ENSEEEG00000007195	tead3b (ENSEEEG00000007197)	ENSEEEG00000007204	PKP1 (ENSEEEG00000007206)	ENSEEEG00000007207	tnni1b (ENSEEEG00000007212)
Cyprinoidei	ANCESTRAL SPECIES	2	ENSGT00940000157127.a	ENSGT00940000156617.e.a	ENSGT00990000203619.B.b	ENSGT01000000214413.b.a.b.b.b	ENSGT00410000025882.a	ENSGT01000000214687	ENSGT00940000159461	ENSGT00940000159388	ENSGT00940000156238.a.a	ENSGT01020000230364.a.a.a.a.b	ENSGT01020000230364.a.a.a.b.mb	ENSGT00390000008040.bb.b	ENSGT00940000167932.a.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.l	ENSGT00940000155806.c.b	ENSGT00730000110997	ENSGT00940000154347.a	ENSGT01030000234555.a.a.b.a.b.b	ENSGT01030000234555.a.a.b.a.b.a.c.a	ENSGT01030000234555.a.a.b.a.b.a.c.b	ENSGT00940000158771	ENSGT00950000182956.b.b.b.e.a	ENSGT00390000009166.a	ENSGT00940000156735.d	ENSGT00390000009166.b	ENSGT00940000156735.c	ENSGT00940000154709.a.b.a.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	9	ENSGT01020000230364.a.a.a.a.b.b	ENSGT01020000230364.a.a.a.b.mb.a	ENSGT00390000008040.bb.b.d	ENSGT00940000167932.a.b.a	ENSGT00940000157882.b.a.a	ENSGT01000000214687.b	ENSGT00940000159461.a	ENSGT00940000159388.a	ENSGT00940000156238.a.a.a	ENSGT01020000230364.a.a.a.a.b.a	ENSGT01020000230364.a.a.a.b.mb.b	ENSGT00390000008040.bb.b.c	ENSGT00940000167932.a.b.b	ENSGT00940000157882.b.a.b	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c.c ##22	ENSGT00940000157549.a.d	ENSGT00490000043415.l.a.b	ENSGT00950000182973.a.c.a.c.d ##22	ENSGT00940000157549.a.c	ENSGT00490000043415.l.b	ENSGT00940000155806.c.b	ENSGT00730000110997.e	ENSGT00940000154347.a.b	ENSGT01030000234555.a.a.b.a.b.b.b	ENSGT01030000234555.a.a.b.a.b.a.c.a.f	ENSGT01030000234555.a.a.b.a.b.a.c.b	ENSGT00940000158771.g.b.b	ENSGT00950000182956.b.b.b.e.a.b.a.a.b	ENSGT00390000009166.b.a	ENSGT00940000156735.c.b
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	2363											HYAL2 (ENSCARG00000054746)	tusc2a (ENSCARG00000054757)	hmga1b (ENSCARG00000054775)	nudt3b (ENSCARG00000054793)	rps10 (ENSCARG00000054802)	pacsin1b (ENSCARG00000054827) ##22	SPDEF (ENSCARG00000054902)	ilrun (ENSCARG00000054912)
Goldfish	MODERN SPECIES	24	ENSCARG00000014869	ENSCARG00000014898	zgc:109913 (ENSCARG00000014902)	DNTTIP1 (ENSCARG00000014907)	PCIF1 (ENSCARG00000014932)	pltp (ENSCARG00000015046)	ENSCARG00000015157	ncoa5 (ENSCARG00000015172)	ENSCARG00000015201	hyal1 (ENSCARG00000015271)	HYAL2 (ENSCARG00000015275)	tusc2a (ENSCARG00000015280)	hmga1b (ENSCARG00000015288)	nudt3b (ENSCARG00000015293)	RPS10 (ENSCARG00000015306)	pacsin1b (ENSCARG00000015318) ##22	SPDEF (ENSCARG00000015339)	ilrun (ENSCARG00000015346)	R3HDM2 (ENSCARG00000015417)	INHBC (ENSCARG00000017559)	gli1 (ENSCARG00000017568)	ENSCARG00000017588	ARHGAP9 (ENSCARG00000017610)	mars1 (ENSCARG00000017742)	ddit3 (ENSCARG00000018899)	ENSCARG00000018906	dctn2 (ENSCARG00000018917)	soat2 (ENSCARG00000019007)	igsf8 (ENSCARG00000019035)	sp7 (ENSCARG00000019038)	ENSCARG00000019046
Cyprininae_a	ANCESTRAL SPECIES	135	ENSGT00940000157127.a.b	ENSGT00940000156617.e.a.j	ENSGT00990000203619.B.b.a	ENSGT01000000214413.b.a.b.b.b.s	ENSGT00410000025882.a.b	ENSGT01000000214687.b	ENSGT00940000159461.a	ENSGT00940000159388.a	ENSGT00940000156238.a.a.a	ENSGT01020000230364.a.a.a.a.b.a	ENSGT01020000230364.a.a.a.b.mb.b	ENSGT00390000008040.bb.b.c	ENSGT00940000167932.a.b.b	ENSGT00940000157882.b.a.b	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c.c ##22	ENSGT00940000157549.a.d	ENSGT00490000043415.l.a.b	ENSGT00940000155806.c.b.h	ENSGT00940000177480.b	ENSGT00730000110997.f	ENSGT00940000154347.a.a	ENSGT01030000234555.a.a.b.a.b.b.a	ENSGT01030000234555.a.a.b.a.b.a.c.a.e	ENSGT00940000158771.g.b.a	ENSGT00950000182956.b.b.b.e.a.b.a.a.a	ENSGT00940000158771.g.a.b	ENSGT00950000182956.b.b.b.e.a.b.b	ENSGT00390000009166.b.b	ENSGT00940000156735.c.a	ENSGT00940000154709.a.b.a.a.b
Common carp reference	MODERN SPECIES	16	ENSCCRG00000082135	rbm5 (ENSCCRG00000071867)	ENSCCRG00000078783	gnb1b (ENSCCRG00000049743)	ENSCCRG00000025684	ENSCCRG00000069170	mst1 (ENSCCRG00000007786)	abhd14b (ENSCCRG00000007769)	cacna2d2a (ENSCCRG00000005696)	ENSCCRG00000074319	hyal1 (ENSCCRG00000020526)	ENSCCRG00000020530	tusc2a (ENSCCRG00000020533)	hmga1b (ENSCCRG00000056020)	rps10 (ENSCCRG00000060271)	pacsin1b (ENSCCRG00000047642) ##22	SPDEF (ENSCCRG00000078812)	ilrun (ENSCCRG00000047811)	ENSCCRG00000046033	ENSCCRG00000063276	snrpc (ENSCCRG00000081127)	ENSCCRG00000080398	ENSCCRG00000024001	ENSCCRG00000023989	tead3b (ENSCCRG00000023671)	ENSCCRG00000023646	ENSCCRG00000023980	ENSCCRG00000062975	tnni1b (ENSCCRG00000052771)	csrp1b (ENSCCRG00000023978)	ENSCCRG00000066630
Golden-line barbel	MODERN SPECIES	93	gnai2b (ENSSGRG00000021975)	SLC38A3 (ENSSGRG00000022589)	rbm5 (ENSSGRG00000023322)	ENSSGRG00000023323	gnb1b (ENSSGRG00000023324)	C3orf18 (ENSSGRG00000023520)	mst1 (ENSSGRG00000023522)	cacna2d2a (ENSSGRG00000023957)	ENSSGRG00000024129	hyal1 (ENSSGRG00000024132)	HYAL2 (ENSSGRG00000024135)	tusc2a (ENSSGRG00000024187)	hmga1b (ENSSGRG00000024189)	nudt3b (ENSSGRG00000024191)	rps10 (ENSSGRG00000024194)	pacsin1b (ENSSGRG00000024200) ##22	SPDEF (ENSSGRG00000024308)	ENSSGRG00000024368	ENSSGRG00000024369	snrpc (ENSSGRG00000024371)	sys1 (ENSSGRG00000024372)	ENSSGRG00000024373	TULP1 (ENSSGRG00000024377)	tead3b (ENSSGRG00000024380)	ENSSGRG00000024538	ENSSGRG00000024539	ENSSGRG00000024540	tnni1b (ENSSGRG00000024625)	csrp1b (ENSSGRG00000024626)	NAV1 (ENSSGRG00000024637)	mybphb (ENSSGRG00000024642)
Cyprininae	ANCESTRAL SPECIES	9	ENSGT00940000167932.a.b.a	ENSGT00940000157882.b.a.a	ENSGT01000000214687.b	ENSGT00940000159461.a	ENSGT00940000159388.a	ENSGT00940000156238.a.a.a	ENSGT01020000230364.a.a.a.a.b.a	ENSGT01020000230364.a.a.a.b.mb.b	ENSGT00390000008040.bb.b.c	ENSGT00940000167932.a.b.b	ENSGT00940000157882.b.a.b	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c.c ##22	ENSGT00940000157549.a.d	ENSGT00490000043415.l.a.b	ENSGT00950000182973.a.c.a.c.d ##22	ENSGT00940000157549.a.c	ENSGT00490000043415.l.b	ENSGT00940000155806.c.b	ENSGT00730000110997.e	ENSGT00940000154347.a.b	ENSGT01030000234555.a.a.b.a.b.b.b	ENSGT01030000234555.a.a.b.a.b.a.c.a.f	ENSGT01030000234555.a.a.b.a.b.a.c.b	ENSGT00940000158771.g.b.b	ENSGT00950000182956.b.b.b.e.a.b.a.a.b	ENSGT00390000009166.b.a	ENSGT00940000156735.c.b	ENSGT00940000154709.a.b.a.a.a	ENSGT01030000234588.a.a.a.a.b	ENSGT00940000156777.c.c
Goldfish	MODERN SPECIES	46	inka1b (ENSCARG00000023987)	gnai2b (ENSCARG00000023991)	SLC38A3 (ENSCARG00000024040)	rbm5 (ENSCARG00000024570)	ENSCARG00000024770	C3orf18 (ENSCARG00000024792)	ENSCARG00000024799	mst1 (ENSCARG00000024859)	abhd14b (ENSCARG00000025523)	cacna2d2a (ENSCARG00000025706)	HYAL2 (ENSCARG00000029847)	tusc2a (ENSCARG00000029852)	hmga1b (ENSCARG00000029861)	nudt3b (ENSCARG00000029873)	rps10 (ENSCARG00000029882)	pacsin1b (ENSCARG00000029895) ##22	SPDEF (ENSCARG00000029985)	ilrun (ENSCARG00000029993)	ANKS1A (ENSCARG00000030024)	snrpc (ENSCARG00000030095)	sys1 (ENSCARG00000030101)	ENSCARG00000030108	ENSCARG00000030109	ENSCARG00000030111	ENSCARG00000030115	ENSCARG00000030119	ENSCARG00000030131	tead3b (ENSCARG00000030174)	ENSCARG00000030220	ENSCARG00000030233	ENSCARG00000030243
Cyprininae_a	ANCESTRAL SPECIES	20	ENSGT00530000063849.A.b.c	ENSGT00940000155125.a.a.b.a	ENSGT00940000157127.a.a	ENSGT00940000156617.e.a.i	ENSGT00990000203619.B.b.b	ENSGT01000000214413.b.a.b.b.b.t	ENSGT00410000025882.a.a	ENSGT01000000214687.a	ENSGT00940000159461.b	ENSGT00940000159388.b	ENSGT00940000156238.a.a.b	ENSGT01020000230364.a.a.a.a.b.b	ENSGT01020000230364.a.a.a.b.mb.a	ENSGT00390000008040.bb.b.d	ENSGT00940000167932.a.b.a	ENSGT00950000182973.a.c.a.c.d ##22	ENSGT00940000157549.a.c	ENSGT00490000043415.l.b	ENSGT00940000155806.c.b.g	ENSGT00730000110997.e	ENSGT00940000154347.a.b	ENSGT01030000234555.a.a.b.a.b.b.b	ENSGT01030000234555.a.a.b.a.b.a.c.a.f	ENSGT01030000234555.a.a.b.a.b.a.c.b	ENSGT00940000158771.g.a.a	ENSGT00950000182956.b.b.b.e.a.b.a.b	ENSGT00940000158771.g.b.b	ENSGT00950000182956.b.b.b.e.a.b.a.a.b	ENSGT00390000009166.b.a	ENSGT00940000156735.c.b	ENSGT00940000154709.a.b.a.a.a
Common carp reference	MODERN SPECIES	10	ENSCCRG00000000237	rbm5 (ENSCCRG00000049748)	ENSCCRG00000049745	gnb1b (ENSCCRG00000049758)	ENSCCRG00000080976	ENSCCRG00000065564	mst1 (ENSCCRG00000033953)	abhd14b (ENSCCRG00000053027)	cacna2d2a (ENSCCRG00000025699)	hyal1 (ENSCCRG00000044272)	ENSCCRG00000044268	tusc2a (ENSCCRG00000080165)	hmga1b (ENSCCRG00000044264)	nudt3b (ENSCCRG00000063235)	RPS10 (ENSCCRG00000020564)	pacsin1b (ENSCCRG00000020579) ##22	SPDEF (ENSCCRG00000026226)	ilrun (ENSCCRG00000026229)	ENSCCRG00000042078	snrpc (ENSCCRG00000020589)	sys1 (ENSCCRG00000080024)	ENSCCRG00000009430	ENSCCRG00000065361	ENSCCRG00000080911	ENSCCRG00000063100	ENSCCRG00000067274	ENSCCRG00000075288	ENSCCRG00000008176	ENSCCRG00000064722	ENSCCRG00000066557	ENSCCRG00000023974
Golden-line barbel	MODERN SPECIES	201	ENSSGRG00000050189	inka1b (ENSSGRG00000050188)	gnai2b (ENSSGRG00000050009)	SLC38A3 (ENSSGRG00000049825)	rbm5 (ENSSGRG00000049694)	ENSSGRG00000049693	gnb1b (ENSSGRG00000049560)	C3orf18 (ENSSGRG00000049555)	abhd14b (ENSSGRG00000049551)	mst1 (ENSSGRG00000049529)	cacna2d2a (ENSSGRG00000049424)	ENSSGRG00000049407	tusc2a (ENSSGRG00000049404)	nudt3b (ENSSGRG00000049381)	rps10 (ENSSGRG00000049374)	pacsin1b (ENSSGRG00000049370) ##22	SPDEF (ENSSGRG00000049369)	ilrun (ENSSGRG00000049368)	ENSSGRG00000049367	snrpc (ENSSGRG00000049366)	ENSSGRG00000049365	ENSSGRG00000049364	ADORA3 (ENSSGRG00000049363)	sys1 (ENSSGRG00000049361)	ENSSGRG00000049360	tead3b (ENSSGRG00000049359)	ENSSGRG00000049358	ENSSGRG00000049357	ENSSGRG00000049356	tnni1b (ENSSGRG00000049355)	csrp1b (ENSSGRG00000049354)
Zebrafish	MODERN SPECIES	21	rbm5 (ENSDARG00000098280)	ENSDARG00000101769	gnb1b (ENSDARG00000104372)	C6H3orf18 (ENSDARG00000100263)	ENSDARG00000078781	mst1 (ENSDARG00000103308)	abhd14b (ENSDARG00000100531)	cacna2d2a (ENSDARG00000103390)	hyal1 (ENSDARG00000059916)	fhit (ENSDARG00000078195)	HYAL2 (ENSDARG00000059931)	tusc2a (ENSDARG00000099817)	hmga1b (ENSDARG00000070951)	nudt3b (ENSDARG00000042123)	rps10 (ENSDARG00000034897)	pacsin1b (ENSDARG00000042128) ##22	SPDEF (ENSDARG00000029930)	ilrun (ENSDARG00000078075)	ENSDARG00000078901	snrpc (ENSDARG00000009871)	sys1 (ENSDARG00000017606)	ENSDARG00000059899	ENSDARG00000026246	ENSDARG00000044061	ENSDARG00000078210	tead3b (ENSDARG00000063649)	ENSDARG00000052701	ENSDARG00000052705	ENSDARG00000100694	tnni1b (ENSDARG00000052708)	csrp1b (ENSDARG00000030980)
Osteoglossiformes	ANCESTRAL SPECIES	308									ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00940000157392.n	ENSGT00940000157882.k	ENSGT00940000157882.l.a	ENSGT00440000034918	ENSGT00950000182973.a.c.a.d ##22	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00940000155806.c.a	ENSGT00940000153185.a.a.b.c ##16	ENSGT00390000017874.b	ENSGT00940000161110.a.a	ENSGT00950000182835.d.a.k.b
P. kingsleyae	MODERN SPECIES	285							ENSPKIG00000003908	ENSPKIG00000003823	ENSPKIG00000003670	ENSPKIG00000003489	GRM4 (ENSPKIG00000003411)	ENSPKIG00000003388	ENSPKIG00000003372	NUDT3 (ENSPKIG00000003355)	rps10 (ENSPKIG00000003321)	pacsin1b (ENSPKIG00000003257) ##22	SPDEF (ENSPKIG00000003229)	ilrun (ENSPKIG00000003195)	snrpc (ENSPKIG00000003136)	slc6a17 (ENSPKIG00000003085)	RBM15 (ENSPKIG00000003067)	ENSPKIG00000003046	ENSPKIG00000003025	ENSPKIG00000003006	ENSPKIG00000002985	ENSPKIG00000002975	ENSPKIG00000002958	AMIGO1 (ENSPKIG00000002950)	AMPD2 (ENSPKIG00000002854)	ENSPKIG00000002782	atp5pb (ENSPKIG00000002761)
Asian bonytongue	MODERN SPECIES	7	atp5pb (ENSSFOG00015019982)	ENSSFOG00015019974	AMIGO1 (ENSSFOG00015019969)	WDR77 (ENSSFOG00015019958)	irf6 (ENSSFOG00015019939)	ENSSFOG00015030882	ENSSFOG00015031053	ENSSFOG00015026879	slc6a17 (ENSSFOG00015019327)	ENSSFOG00015019313	ENSSFOG00015019151	ENSSFOG00015019100	ENSSFOG00015019090	nudt3a (ENSSFOG00015019218)	RPS10 (ENSSFOG00015019200)	pacsin1b (ENSSFOG00015019174) ##22	ilrun (ENSSFOG00015019163)	snrpc (ENSSFOG00015019150)	LDLRAD2 (ENSSFOG00015019135)	USP48 (ENSSFOG00015019049)	etnppl (ENSSFOG00015019020)	ostc (ENSSFOG00015019009)	ENSSFOG00015018971	H2AZ1 (ENSSFOG00015029988)	PPP3CA (ENSSFOG00015018908)	NFIB (ENSSFOG00015018825)	ENSSFOG00015018790	stra6l (ENSSFOG00015018765)	ENSSFOG00015018746	b4galt1l (ENSSFOG00015009528)	abca1a (ENSSFOG00015009376)
Osteoglossocephalai	ANCESTRAL SPECIES	246									ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000160123.e.b	ENSGT01030000234648.a.b.a.a.a	ENSGT00410000025882.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.d ##22	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00940000155806.c.b	ENSGT00940000160792	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16
Osteoglossiformes	ANCESTRAL SPECIES	308										ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00940000157392.n	ENSGT00940000157882.k	ENSGT00940000157882.l.a	ENSGT00440000034918	ENSGT00950000182973.a.c.a.d ##22	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549	ENSGT00490000043415	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00940000155806.c.a	ENSGT00940000153185.a.a.b.c ##16	ENSGT00390000017874.b	ENSGT00940000161110.a.a	ENSGT00950000182835.d.a.k.b
Asian bonytongue	MODERN SPECIES	10	SYT2 (ENSSFOG00015031201)	ENSSFOG00015028965	ENSSFOG00015032618	SYT2 (ENSSFOG00015022645)	ENSSFOG00015030251	ENSSFOG00015022611	ENSSFOG00015030537	ENSSFOG00015022568	GRM4 (ENSSFOG00015022554)	ENSSFOG00015022548	hmga1a (ENSSFOG00015031448)	SMIM29 (ENSSFOG00015024775)	ENSSFOG00015031819	nudt3a (ENSSFOG00015022497)	rps10 (ENSSFOG00015024890)	pacsin1a (ENSSFOG00015027372) ##22	SPDEF (ENSSFOG00015022446)	ILRUN (ENSSFOG00015024501)	SNRPC (ENSSFOG00015022422)	BLTP3A (ENSSFOG00015022390)	ANKS1A (ENSSFOG00015030366)	scube3 (ENSSFOG00015022325) ##16	ENSSFOG00015030945	ENSSFOG00015028954	pfkfb2a (ENSSFOG00015022210)	SLC26A9 (ENSSFOG00015022184)	slc48a1a (ENSSFOG00015028152)	RAPGEF3 (ENSSFOG00015022138)	itga5 (ENSSFOG00015022112)	CSRNP2 (ENSSFOG00015026829)	TFCP2 (ENSSFOG00015022044)
P. kingsleyae	MODERN SPECIES	59											GRM4 (ENSPKIG00000001301)	hmga1a (ENSPKIG00000001356)	SMIM29 (ENSPKIG00000001373)	nudt3a (ENSPKIG00000001412)	RPS10 (ENSPKIG00000001472)	pacsin1a (ENSPKIG00000001540) ##22	SPDEF (ENSPKIG00000001617)	ILRUN (ENSPKIG00000001636)	SNRPC (ENSPKIG00000001671)	BLTP3A (ENSPKIG00000001733)	ANKS1A (ENSPKIG00000001810)	scube3 (ENSPKIG00000001868) ##16	ENSPKIG00000001924	ENSPKIG00000001967	PFKFB2 (ENSPKIG00000002071)	sarnp (ENSPKIG00000002212)	ccnt1 (ENSPKIG00000002270)	kansl2 (ENSPKIG00000002317)	ENSPKIG00000002369	TMBIM6 (ENSPKIG00000002418)	SLC11A2 (ENSPKIG00000002469)
Clupeocephala	ANCESTRAL SPECIES	90	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00410000025882.b	ENSGT00940000157392.p	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.l	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000163310.l	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000165533.d	ENSGT01050000244866.B.c.b
Otomorpha	ANCESTRAL SPECIES	157	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00940000157392.p	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c ##22	ENSGT00940000157549.a	ENSGT00490000043415.l	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00940000159065.a	ENSGT00940000163428.a.a.b
Clupeiformes	ANCESTRAL SPECIES	21	ENSGT00940000155067.b.b	ENSGT01030000234555.a.a.b.a.b.a.d	ENSGT00940000156777.d	ENSGT00940000156637.a	ENSGT00940000158040.c	ENSGT00940000165428.c.a	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00410000025882.b	ENSGT00940000157392.p	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00950000182982.B.c.b	ENSGT00940000158762.f	ENSGT00390000013839.c.b	ENSGT00400000022086.b.a.b	ENSGT01070000253766.B.f.b	ENSGT00940000159974.b	ENSGT00940000160661	ENSGT00940000161936	ENSGT00940000156364.a.b	ENSGT00950000183032.A.b.b.b.a.b
Atlantic herring	MODERN SPECIES	20	NAV1 (ENSCHAG00000001738)	mybpha (ENSCHAG00000005301)	ENSCHAG00000005698	ENSCHAG00000005721	ENSCHAG00000005745	SYT2 (ENSCHAG00000005753)	ENSCHAG00000005820	ENSCHAG00000005848	ENSCHAG00000005879	GRM4 (ENSCHAG00000006184)	ENSCHAG00000006521	SMIM29 (ENSCHAG00000006534)	ENSCHAG00000006563	nudt3a (ENSCHAG00000006577)	rps10 (ENSCHAG00000006608)	pacsin1a (ENSCHAG00000006652) ##22	SPDEF (ENSCHAG00000006771)	ilrun (ENSCHAG00000006788)	BLTP3A (ENSCHAG00000006831)	taf11 (ENSCHAG00000007240)	ANKS1A (ENSCHAG00000007286)	ENSCHAG00000007612	OSBPL2 (ENSCHAG00000007713)	ADRM1 (ENSCHAG00000008102)	ENSCHAG00000008159	xkr7a (ENSCHAG00000008172)	OPRL1 (ENSCHAG00000008183)	NPBWR1 (ENSCHAG00000008190)	MYT1 (ENSCHAG00000008243)	pcmtd2a (ENSCHAG00000008908)	asxl1 (ENSCHAG00000008933)
Denticle herring	MODERN SPECIES	1	ENSDCDG00000020263	ENSDCDG00000020267	ENSDCDG00000020269	ENSDCDG00000020273	SYT2 (ENSDCDG00000020280)	ENSDCDG00000020285	ENSDCDG00000020290	ENSDCDG00000020292	GRM4 (ENSDCDG00000020299)	ENSDCDG00000021019	hmga1a (ENSDCDG00000021021)	ENSDCDG00000021023	ENSDCDG00000021025	nudt3a (ENSDCDG00000021026)	rps10 (ENSDCDG00000021029)	pacsin1a (ENSDCDG00000021035) ##22	SPDEF (ENSDCDG00000021037)	ilrun (ENSDCDG00000021042)	BLTP3A (ENSDCDG00000021051)	taf11 (ENSDCDG00000021062)	ANKS1A (ENSDCDG00000021081)	ENSDCDG00000021351	OSBPL2 (ENSDCDG00000021362)	ENSDCDG00000021436	snai1b (ENSDCDG00000021447)	TP53INP2 (ENSDCDG00000021449)	GGT7 (ENSDCDG00000021455)	NCOA6 (ENSDCDG00000021501)	zgc:114123 (ENSDCDG00000021506)	TOP1 (ENSDCDG00000021537)	plcg1 (ENSDCDG00000022166)
Otophysi	ANCESTRAL SPECIES	510																ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a
Characiphysae	ANCESTRAL SPECIES	299																ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a
Channel catfish	MODERN SPECIES	6	mitfb (ENSIPUG00000017300)	tmem106c (ENSIPUG00000017323)	ENSIPUG00000017333	twist3 (ENSIPUG00000017339)	ENSIPUG00000017353	Klf15 (ENSIPUG00000017412)	ENSIPUG00000017416	ENSIPUG00000017426	CHST13 (ENSIPUG00000017433)	ndnl2 (ENSIPUG00000017446)	ID1 (ENSIPUG00000017459)	HM13 (ENSIPUG00000017475)	ENSIPUG00000017531	GDI1 (ENSIPUG00000017551)	ENSIPUG00000017577	pacsin1a (ENSIPUG00000017587) ##22	ENSIPUG00000017644	SPDEF (ENSIPUG00000017654)	ILRUN (ENSIPUG00000017672)	tafazzin (ENSIPUG00000017688)	ATP6AP1 (ENSIPUG00000017801)	ENSIPUG00000017832	slc6a1a (ENSIPUG00000017842)	VGLL4 (ENSIPUG00000017868)	Syn2 (ENSIPUG00000017901)	ENSIPUG00000017936	ENSIPUG00000017984	RAF1 (ENSIPUG00000018733)	cnbpa (ENSIPUG00000018873)	ENSIPUG00000018890	Iqsec1 (ENSIPUG00000018899)
Characiphysae_b	ANCESTRAL SPECIES	77	ENSGT00940000156047.b	ENSGT00390000009491.d	ENSGT00940000156915.f.a	ENSGT00530000064244.a	ENSGT00950000183041.A.a.b	ENSGT00940000156084	ENSGT00940000156062.n	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.D	ENSGT00940000157262.n	ENSGT00940000156650.j	ENSGT00390000018621	ENSGT00940000167069	ENSGT00950000182994.B.a.a.a.d.a	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00940000156478	ENSGT00940000161109.t	ENSGT00940000164454	ENSGT00940000161154.b	ENSGT00950000183042.b.a	ENSGT00940000156977.f	ENSGT00940000159659.d.a.c	ENSGT00940000157172	ENSGT00390000017888	ENSGT00390000004915.b	ENSGT00950000183056.A.b	ENSGT00940000158351	ENSGT00940000159969.b.a.a
Characoidei	ANCESTRAL SPECIES	38	ENSGT00940000158523.c.a	ENSGT00940000156047.b	ENSGT00390000009491.d	ENSGT00940000156915.f.a	ENSGT00530000064244.a	ENSGT00950000183041.A.a.b	ENSGT00940000156062.n	ENSGT00390000003282.B.e	ENSGT00940000156027.a	ENSGT00940000153541.A	ENSGT00940000158342.a.a	ENSGT00940000156650.j	ENSGT00390000018621	ENSGT00940000167069	ENSGT00950000182994.B.a.a.a.d.a	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00940000156478	ENSGT00940000161109.t	ENSGT00940000164454	ENSGT00940000161154.b	ENSGT00950000183042.b.a	ENSGT00940000156977.f	ENSGT00940000159659.d.a.c	ENSGT00940000157172	ENSGT00390000017888	ENSGT00390000004915.b	ENSGT00950000183056.A.b	ENSGT00940000158351	ENSGT00940000159969.b.a.a
Mexicana tetra	MODERN SPECIES	6	IQSEC1 (ENSAMXG00000001027)	cnbpa (ENSAMXG00000032363)	ENSAMXG00000026018	raf1a (ENSAMXG00000001055)	ENSAMXG00000043189	ENSAMXG00000041369	ENSAMXG00000043621	syn2a (ENSAMXG00000001126)	VGLL4 (ENSAMXG00000038300)	slc6a1a (ENSAMXG00000009126)	ENSAMXG00000035577	atp6ap1a (ENSAMXG00000009113)	tafazzin (ENSAMXG00000043118)	ENSAMXG00000039739	GDI1 (ENSAMXG00000009105)	pacsin1a (ENSAMXG00000036749) ##22	SPDEF (ENSAMXG00000040721)	ILRUN (ENSAMXG00000032528)	hm13 (ENSAMXG00000032438)	ENSAMXG00000031705	ndnl2 (ENSAMXG00000012845)	ENSAMXG00000012863	ENSAMXG00000029156	ENSAMXG00000012871	klf15 (ENSAMXG00000037576)	CPNE9 (ENSAMXG00000043995)	cmtr1 (ENSAMXG00000012891)	fbxo25 (ENSAMXG00000031988)	ENSAMXG00000039410	ENSAMXG00000014298	acp1 (ENSAMXG00000040715)
Red-bellied piranha	MODERN SPECIES	55	NUP210 (ENSPNAG00000022954)	IQSEC1 (ENSPNAG00000022682)	ENSPNAG00000022440	cnbpa (ENSPNAG00000022431)	raf1a (ENSPNAG00000022396)	ENSPNAG00000022259	syn2a (ENSPNAG00000022244)	VGLL4 (ENSPNAG00000022221)	slc6a1a (ENSPNAG00000022190)	ENSPNAG00000022129	ENSPNAG00000022099	atp6ap1a (ENSPNAG00000022089)	tafazzin (ENSPNAG00000022068)	ENSPNAG00000022018	GDI1 (ENSPNAG00000021971)	pacsin1a (ENSPNAG00000021909) ##22
Electric eel	MODERN SPECIES	54	FBLN2 (ENSEEEG00000008980)	NUP210 (ENSEEEG00000008993)	IQSEC1 (ENSEEEG00000009053)	ENSEEEG00000009481	cnbpa (ENSEEEG00000009483)	raf1a (ENSEEEG00000009503)	syn2a (ENSEEEG00000009732)	VGLL4 (ENSEEEG00000009744)	slc6a1a (ENSEEEG00000009746)	ENSEEEG00000009762	DUSP7 (ENSEEEG00000009828)	atp6ap1a (ENSEEEG00000009833)	tafazzin (ENSEEEG00000009836)	ENSEEEG00000009841	gdi1 (ENSEEEG00000009844)	pacsin1a (ENSEEEG00000009894) ##22	SPDEF (ENSEEEG00000009896)	ILRUN (ENSEEEG00000009902)	hm13 (ENSEEEG00000009908)	ID1 (ENSEEEG00000009919)	ENSEEEG00000009924	CHST13 (ENSEEEG00000009928)	ENSEEEG00000009951
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00950000182973.a.c.a.d ##22
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	1088													ENSGT00940000167932.a.a.b	ENSGT00410000025882.b.b	ENSGT00940000157882.a	ENSGT00950000182973.a.c.a.d.a ##22
Cyprininae_a	ANCESTRAL SPECIES	808													ENSGT00940000167932.a.a.b	ENSGT00410000025882.b.b	ENSGT00940000157882.a	ENSGT00950000182973.a.c.a.d.a ##22
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	603															nudt3a (ENSSGRG00000053746)	pacsin1a (ENSSGRG00000053747) ##22	spata2 (ENSSGRG00000053753)	rnf114 (ENSSGRG00000053754)	mafba (ENSSGRG00000053755)	ENSSGRG00000053756	dhx35 (ENSSGRG00000053757)	rab5if (ENSSGRG00000053788)	zhx3b (ENSSGRG00000053790)	plcg1 (ENSSGRG00000053791)	TOP1 (ENSSGRG00000053815)	zgc:114123 (ENSSGRG00000053818)	ENSSGRG00000053820	GGT7 (ENSSGRG00000053822)
Golden-line barbel	MODERN SPECIES	1559												ENSSGRG00000012303	hmga1a (ENSSGRG00000012304)	SMIM29 (ENSSGRG00000012305)	nudt3a (ENSSGRG00000012306)	pacsin1a (ENSSGRG00000012307) ##22	ENSSGRG00000012364	ENSSGRG00000012368	ENSSGRG00000012369
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	1251															ENSGT00940000157882.b.b.a	ENSGT00950000182973.a.c.a.d.b.a ##22	ENSGT00950000182996.b.a.a.b.d.b.a.a.b.a.a
Goldfish	MODERN SPECIES	57	ENSCARG00000030590	adtrp1 (ENSCARG00000030578)	sgk2a (ENSCARG00000030347)	arl6ip5b (ENSCARG00000030336)	srsf6a (ENSCARG00000030325)	zgc:113278 (ENSCARG00000029707)	aar2 (ENSCARG00000029677)	ENSCARG00000029656	ENSCARG00000029633	EMILIN3 (ENSCARG00000029601)	b4galt5 (ENSCARG00000029259)	slc9a8 (ENSCARG00000028396)	ENSCARG00000028346	hmga1a (ENSCARG00000028320)	nudt3a (ENSCARG00000028299)	pacsin1a (ENSCARG00000028221) ##22	ENSCARG00000028206	spata2 (ENSCARG00000028196)	rnf114 (ENSCARG00000028192)	mafba (ENSCARG00000028185)	rab5if (ENSCARG00000028182)	zhx3b (ENSCARG00000028175)	plcg1 (ENSCARG00000026709)	ENSCARG00000026627	NCOA6 (ENSCARG00000026591)	GGT7 (ENSCARG00000026523)	ENSCARG00000026503	snai1b (ENSCARG00000026486)	ENSCARG00000026478	tcp1 (ENSCARG00000026367)	PLEKHG1 (ENSCARG00000026347)
Cyprininae_a	ANCESTRAL SPECIES	932															ENSGT00940000157882.b.b.a	ENSGT00950000182973.a.c.a.d.b.a ##22	ENSGT00950000182996.b.a.a.b.d.b.a.a.b.a.a
Common carp reference	MODERN SPECIES	11	ENSCCRG00000070198	ENSCCRG00000013508	mybl2a (ENSCCRG00000062825)	ENSCCRG00000054965	sgk2a (ENSCCRG00000030012)	ENSCCRG00000073134	ENSCCRG00000013582	zgc:113278 (ENSCCRG00000072829)	aar2 (ENSCCRG00000073612)	ENSCCRG00000040330	b4galt5 (ENSCCRG00000016918)	slc9a8 (ENSCCRG00000052225)	hmga1a (ENSCCRG00000067646)	ENSCCRG00000060197	nudt3a (ENSCCRG00000055456)	pacsin1a (ENSCCRG00000082067) ##22	ENSCCRG00000048972	spata2 (ENSCCRG00000015742)	rnf114 (ENSCCRG00000015736)	mafba (ENSCCRG00000074407)	ENSCCRG00000075257	ENSCCRG00000070138	ENSCCRG00000074500	ENSCCRG00000065758	zhx3b (ENSCCRG00000075543)	plcg1 (ENSCCRG00000032195)	TOP1 (ENSCCRG00000032166)	ENSCCRG00000082092	ENSCCRG00000071709	ENSCCRG00000075756	snai1b (ENSCCRG00000022786)
Cyprininae	ANCESTRAL SPECIES	895													ENSGT00940000167932.a.a.a.a	ENSGT00410000025882.b.a	ENSGT00940000157882.b.b.b	ENSGT00950000182973.a.c.a.d.b.b ##22	ENSGT00940000164679.eb.d.b.b.b	ENSGT00940000164679.eb.d.b.b.a
Goldfish	MODERN SPECIES	15	ENSCARG00000014295	hmga1a (ENSCARG00000014289)	SMIM29 (ENSCARG00000014279)	nudt3a (ENSCARG00000014274)	ENSCARG00000014260	ENSCARG00000014251	ENSCARG00000014241	ENSCARG00000014226	ENSCARG00000014212	ENSCARG00000014204	ENSCARG00000014181	ENSCARG00000014172	spata2 (ENSCARG00000014162)	rnf114 (ENSCARG00000014157)	ENSCARG00000014154	pacsin1a (ENSCARG00000014066) ##22	mafba (ENSCARG00000014042)	dhx35 (ENSCARG00000013970)	rab5if (ENSCARG00000013958)	zhx3b (ENSCARG00000013954)	plcg1 (ENSCARG00000013028)	TOP1 (ENSCARG00000012904)	ENSCARG00000012843	GGT7 (ENSCARG00000012143)	TP53INP2 (ENSCARG00000012126)	snai1b (ENSCARG00000012120)	PRSS35 (ENSCARG00000012115)	tcp1 (ENSCARG00000011994)	PLEKHG1 (ENSCARG00000011944)	CC2D2A (ENSCARG00000011654)	ENSCARG00000011642
Cyprininae_a	ANCESTRAL SPECIES	659													ENSGT00940000167932.a.a.a.a	ENSGT00410000025882.b.a	ENSGT00940000157882.b.b.b	ENSGT00950000182973.a.c.a.d.b.b ##22	ENSGT00940000156038.a.b.b.d.a	ENSGT00940000164679.eb.d.b.b.b	ENSGT00940000164679.eb.d.b.b.a
Common carp reference	MODERN SPECIES	49	zgc:113278 (ENSCCRG00000043689)	ENSCCRG00000043935	ENSCCRG00000057850	ENSCCRG00000072322	b4galt5 (ENSCCRG00000041252)	slc9a8 (ENSCCRG00000071841)	ENSCCRG00000060727	ENSCCRG00000077577	ENSCCRG00000064217	ENSCCRG00000065072	opn7b (ENSCCRG00000082421)	ENSCCRG00000019327	ENSCCRG00000067239	ENSCCRG00000054162	nudt3a (ENSCCRG00000073754)	pacsin1a (ENSCCRG00000052233) ##22	ENSCCRG00000078380	ENSCCRG00000068570	ENSCCRG00000064976	ENSCCRG00000081689	ENSCCRG00000069841	ENSCCRG00000015773	ENSCCRG00000080474	ENSCCRG00000078263	ENSCCRG00000078144	ENSCCRG00000070147	ENSCCRG00000020987	ENSCCRG00000045681	spata2 (ENSCCRG00000071221)	rnf114 (ENSCCRG00000060470)	mafba (ENSCCRG00000063775)
Zebrafish	MODERN SPECIES	15	sgk2a (ENSDARG00000063370)	L3MBTL1 (ENSDARG00000014828)	ENSDARG00000094801	ENSDARG00000095510	srsf6a (ENSDARG00000013729)	arl6ip5b (ENSDARG00000016238)	zgc:113278 (ENSDARG00000037813)	aar2 (ENSDARG00000018658)	ENSDARG00000076299	b4galt5 (ENSDARG00000037815)	slc9a8 (ENSDARG00000020699)	opn7b (ENSDARG00000116584)	hmga1a (ENSDARG00000028335)	SMIM29 (ENSDARG00000090634)	nudt3a (ENSDARG00000016256)	pacsin1a (ENSDARG00000032865) ##22	ENSDARG00000105341	spata2 (ENSDARG00000063250)	rnf114 (ENSDARG00000009886)	mafba (ENSDARG00000017121)	dhx35 (ENSDARG00000063419)	rab5if (ENSDARG00000074790)	zhx3b (ENSDARG00000019774)	plcg1 (ENSDARG00000038442)	TOP1 (ENSDARG00000086775)	zgc:114123 (ENSDARG00000044956)	ENSDARG00000071272	ENSDARG00000115082	GGT7 (ENSDARG00000115805)	ENSDARG00000109769	snai1b (ENSDARG00000046019)
Euteleosteomorpha	ANCESTRAL SPECIES	44	ENSGT00940000156326.a.a	ENSGT00730000111641.a	ENSGT00940000165920.a	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00940000157392.p	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00490000043415.k.b	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000163310.l	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000165533.d	ENSGT01050000244866.B.c.b
Acanthomorphata	ANCESTRAL SPECIES	3	ENSGT00940000159731	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b
Euacanthomorphacea	ANCESTRAL SPECIES	2	ENSGT00940000159731	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b
Pinecone sodierfish	MODERN SPECIES	21	arl6ip5b (ENSMMDG00005017082)	LMOD3 (ENSMMDG00005017081)	FRMD4B (ENSMMDG00005017076)	mitfb (ENSMMDG00005016805)	ENSMMDG00005016802	eif4e3 (ENSMMDG00005016796)	ENSMMDG00005016793	guca1b (ENSMMDG00005016790)	oard1 (ENSMMDG00005016788)	SYT2 (ENSMMDG00005016786)	ENSMMDG00005016784	ENSMMDG00005016777	GRM4 (ENSMMDG00005016739)	ENSMMDG00005016728	SMIM29 (ENSMMDG00005016725)	pacsin1a (ENSMMDG00005016719) ##22	SPDEF (ENSMMDG00005016706)	ilrun (ENSMMDG00005016703)	BLTP3A (ENSMMDG00005016702)	taf11 (ENSMMDG00005016698)	ANKS1A (ENSMMDG00005016664)	ENSMMDG00005016655	scube3 (ENSMMDG00005013637) ##16	ENSMMDG00005013597	PFKFB2 (ENSMMDG00005008736)	ENSMMDG00005008637	pcbp2 (ENSMMDG00005007623)	map3k12 (ENSMMDG00005007583)	aaas (ENSMMDG00005006424)	col2a1a (ENSMMDG00005000945)	GLS2 (ENSMMDG00005000862)
Percomorphaceae	ANCESTRAL SPECIES	7	ENSGT00940000159731	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b
Tiger tail seahorse	MODERN SPECIES	404	parapinopsina (ENSHCOG00000001902)	ENSHCOG00000001885	p4htma (ENSHCOG00000001858)	ENSHCOG00000001846	ENSHCOG00000001824	SLC26A6 (ENSHCOG00000001784)	KBTBD12 (ENSHCOG00000001709)	ENSHCOG00000001701	cfap20 (ENSHCOG00000001687)	samhd1 (ENSHCOG00000020558)	snai1b (ENSHCOG00000020556)	ENSHCOG00000000816	GRM4 (ENSHCOG00000020506)	hmga1a (ENSHCOG00000020487)	SMIM29 (ENSHCOG00000020479)	pacsin1a (ENSHCOG00000020474) ##22	SPDEF (ENSHCOG00000020452)	ilrun (ENSHCOG00000000713)	BLTP3A (ENSHCOG00000020148)	taf11 (ENSHCOG00000020114)	ANKS1A (ENSHCOG00000020105)	ENSHCOG00000020015	scube3 (ENSHCOG00000020006) ##16	ENSHCOG00000019961	pfkfb2a (ENSHCOG00000019938)	ENSHCOG00000019924	pcbp2 (ENSHCOG00000019886)	map3k12 (ENSHCOG00000019859)	aaas (ENSHCOG00000019828)	col2a1a (ENSHCOG00000019810)	GLS2 (ENSHCOG00000019713)
Percomorphaceae_B	ANCESTRAL SPECIES	6	ENSGT00940000159731	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b
Ovalentaria	ANCESTRAL SPECIES	6	ENSGT00940000159731	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b
Atherinomorphae	ANCESTRAL SPECIES	3	ENSGT00940000159731	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b	ENSGT00940000159780
Cyprinodontiformes	ANCESTRAL SPECIES	4	ENSGT00940000159731	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b	ENSGT00940000159780
Aplocheiloidei	ANCESTRAL SPECIES		ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00390000011238	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b	ENSGT00940000159780
Mangrove rivulus	MODERN SPECIES	13	FRMD4B (ENSKMAG00000009928)	mitfb (ENSKMAG00000010000)	ENSKMAG00000010050	ENSKMAG00000010077	eif4e3 (ENSKMAG00000010167)	ppp4r2a (ENSKMAG00000010201)	oard1 (ENSKMAG00000010222)	guca1b (ENSKMAG00000010238)	SYT2 (ENSKMAG00000010271)	ENSKMAG00000010344	ENSKMAG00000010374	ENSKMAG00000010408	GRM4 (ENSKMAG00000010513)	hmga1a (ENSKMAG00000010571)	ENSKMAG00000010586	pacsin1a (ENSKMAG00000010634) ##22	ilrun (ENSKMAG00000010704)	BLTP3A (ENSKMAG00000010747)	taf11 (ENSKMAG00000010780)	ANKS1A (ENSKMAG00000010858)	ENSKMAG00000011073	scube3 (ENSKMAG00000011109) ##16	ENSKMAG00000011207	pfkfb2a (ENSKMAG00000011230)	DLGAP4 (ENSKMAG00000011302)	pcbp2 (ENSKMAG00000011367)	map3k12 (ENSKMAG00000011456)	aaas (ENSKMAG00000011524)	col2a1a (ENSKMAG00000011552)	GLS2 (ENSKMAG00000011645)	spryd4 (ENSKMAG00000011681)
Turquoise killifish	MODERN SPECIES	1624	SNPHA (ENSNFUG00015005340)	Nfu_g_1_001572 (ENSNFUG00015005331)	oard1 (ENSNFUG00015005290)	SYT2 (ENSNFUG00015005275)	PPP1R12B (ENSNFUG00015005256)	Nfu_g_1_001532 (ENSNFUG00015005243)	ENSNFUG00015005213	ENSNFUG00015005200	ENSNFUG00015005195	GRM4 (ENSNFUG00015005026)	ENSNFUG00015004951	ENSNFUG00015004944	ENSNFUG00015004940	ENSNFUG00015004926	SMIM29 (ENSNFUG00015004918)	PACSIN1A (ENSNFUG00015004845) ##22	C6ORF106 (ENSNFUG00015022528)	UHRF1BP1 (ENSNFUG00015022520)	TAF11 (ENSNFUG00015022519)	TMEM194A (ENSNFUG00015022508)	ORMDL2 (ENSNFUG00015022504)	ENSNFUG00015022502	PAN2 (ENSNFUG00015022494)	SPATS2 (ENSNFUG00015022490)	WIBG (ENSNFUG00015022489)	MMP19 (ENSNFUG00015022487)	Nfu_g_1_001587 (ENSNFUG00015022482)	CABZ01084942.1 (ENSNFUG00015022478)	ocstamp (ENSNFUG00015022476)	SLC13A3 (ENSNFUG00015022459)	PAR1 (ENSNFUG00015022454)
Cyprinodontoidei	ANCESTRAL SPECIES	3	ENSGT00940000159731	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b	ENSGT00940000159780
NAME_4	ANCESTRAL SPECIES	21	ENSGT00940000159731	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b	ENSGT00940000159780
Mummichog	MODERN SPECIES	2226	LMOD3 (ENSFHEG00000006588)	mitfb (ENSFHEG00000008148)	ENSFHEG00000008230	spc25 (ENSFHEG00000008240)	eif4e3 (ENSFHEG00000008279)	ENSFHEG00000008293	guca1b (ENSFHEG00000008497)	oard1 (ENSFHEG00000008533)	SYT2 (ENSFHEG00000008553)	ENSFHEG00000008583	ENSFHEG00000008603	ENSFHEG00000008681	GRM4 (ENSFHEG00000008715)	hmga1a (ENSFHEG00000008729)	SMIM29 (ENSFHEG00000008742)	pacsin1a (ENSFHEG00000008762) ##22	ilrun (ENSFHEG00000008788)	BLTP3A (ENSFHEG00000008944)	taf11 (ENSFHEG00000008968)	ANKS1A (ENSFHEG00000009266)	ENSFHEG00000009324	scube3 (ENSFHEG00000009478) ##16	ENSFHEG00000009494	PFKFB2 (ENSFHEG00000009537)	DLGAP4 (ENSFHEG00000009546)	pcbp2 (ENSFHEG00000009608)	map3k12 (ENSFHEG00000009675)	aaas (ENSFHEG00000009696)	col2a1a (ENSFHEG00000014769)	GLS2 (ENSFHEG00000014898)	spryd4 (ENSFHEG00000014914)
Sheepshead minnow	MODERN SPECIES	199	LMOD3 (ENSCVAG00000003950)	FRMD4B (ENSCVAG00000003936)	mitfb (ENSCVAG00000003807)	ENSCVAG00000023261	eif4e3 (ENSCVAG00000023205)	ENSCVAG00000023190	guca1b (ENSCVAG00000023180)	oard1 (ENSCVAG00000023174)	SYT2 (ENSCVAG00000023162)	ENSCVAG00000023156	ENSCVAG00000023109	ENSCVAG00000023090	GRM4 (ENSCVAG00000023051)	hmga1a (ENSCVAG00000023019)	SMIM29 (ENSCVAG00000023002)	pacsin1a (ENSCVAG00000022993) ##22	ilrun (ENSCVAG00000022951)	BLTP3A (ENSCVAG00000022934)	taf11 (ENSCVAG00000022925)	ANKS1A (ENSCVAG00000022892)
Poeciliinae	ANCESTRAL SPECIES	2	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00390000011238	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988.z	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b	ENSGT00940000159780
Poecilia	ANCESTRAL SPECIES	14	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00390000011238	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988.z	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b	ENSGT00940000159780
NAME_6	ANCESTRAL SPECIES	23	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00390000011238	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988.z	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b	ENSGT00940000159780
Amazon molly	MODERN SPECIES	370	FRMD4B (ENSPFOG00000006714)	mitfb (ENSPFOG00000007171)	ENSPFOG00000007399	ENSPFOG00000007428	eif4e3 (ENSPFOG00000007551)	ENSPFOG00000007627	guca1b (ENSPFOG00000007725)	oard1 (ENSPFOG00000007773)	SYT2 (ENSPFOG00000007780)	ENSPFOG00000007908	ENSPFOG00000007912	ENSPFOG00000007918	GRM4 (ENSPFOG00000008171)	hmga1a (ENSPFOG00000008457)	SMIM29 (ENSPFOG00000008463)	pacsin1a (ENSPFOG00000008472) ##22	ilrun (ENSPFOG00000008533)	BLTP3A (ENSPFOG00000008598)	taf11 (ENSPFOG00000008998)	ANKS1A (ENSPFOG00000009029)	ENSPFOG00000009291	scube3 (ENSPFOG00000009325) ##16	ENSPFOG00000024032	pfkfb2a (ENSPFOG00000009728)	DLGAP4 (ENSPFOG00000010011)	pcbp2 (ENSPFOG00000010086)	map3k12 (ENSPFOG00000010164)	aaas (ENSPFOG00000010272)	col2a1a (ENSPFOG00000010436)	GLS2 (ENSPFOG00000011849)	spryd4 (ENSPFOG00000012152)
Sailfin molly	MODERN SPECIES	2097														hmga1a (ENSPLAG00000005835)	SMIM29 (ENSPLAG00000005813)	pacsin1a (ENSPLAG00000005808) ##22	ilrun (ENSPLAG00000000116)
Guppy	MODERN SPECIES	245																pacsin1a (ENSPREG00000003627) ##22
Platyfish	MODERN SPECIES		FRMD4B (ENSXMAG00000016435)	mitfb (ENSXMAG00000016472)	ENSXMAG00000016489	ENSXMAG00000016493	eif4e3 (ENSXMAG00000024672)	ENSXMAG00000009582	guca1b (ENSXMAG00000022127)	ENSXMAG00000016506	SYT2 (ENSXMAG00000016509)	ENSXMAG00000016524	ENSXMAG00000016527	ENSXMAG00000016529	GRM4 (ENSXMAG00000016544)	hmga1a (ENSXMAG00000016571)	SMIM29 (ENSXMAG00000016573)	pacsin1a (ENSXMAG00000016576) ##22	ilrun (ENSXMAG00000022264)	BLTP3A (ENSXMAG00000016608)	taf11 (ENSXMAG00000016646)	ANKS1A (ENSXMAG00000016654)	ENSXMAG00000022061	scube3 (ENSXMAG00000016699) ##16	ENSXMAG00000022642	PFKFB2 (ENSXMAG00000016736)	DLGAP4 (ENSXMAG00000016762)	pcbp2 (ENSXMAG00000021752)	map3k12 (ENSXMAG00000016777)	aaas (ENSXMAG00000016820)	col2a1a (ENSXMAG00000016824)	GLS2 (ENSXMAG00000017173)	spryd4 (ENSXMAG00000021258)
Oryzias	ANCESTRAL SPECIES	4	ENSGT00940000159731	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b	ENSGT00940000159780
Oryzias_b	ANCESTRAL SPECIES	2	ENSGT00940000159731	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b	ENSGT00940000159780
Indian medaka	MODERN SPECIES	23	LMOD3 (ENSOMEG00000004488)	FRMD4B (ENSOMEG00000004533)	mitfb (ENSOMEG00000004573)	ENSOMEG00000004624	eif4e3 (ENSOMEG00000004650)	ENSOMEG00000004679	guca1b (ENSOMEG00000004691)	oard1 (ENSOMEG00000004709)	SYT2 (ENSOMEG00000004746)	ENSOMEG00000004820	ENSOMEG00000004839	ENSOMEG00000004950	GRM4 (ENSOMEG00000005033)	hmga1a (ENSOMEG00000005055)	SMIM29 (ENSOMEG00000005067)	pacsin1a (ENSOMEG00000005086) ##22	ilrun (ENSOMEG00000005106)	BLTP3A (ENSOMEG00000005127)	taf11 (ENSOMEG00000005158)	ANKS1A (ENSOMEG00000005364)	ENSOMEG00000005444	scube3 (ENSOMEG00000005579) ##16	ENSOMEG00000005618	PFKFB2 (ENSOMEG00000005685)	ENSOMEG00000005701	DLGAP4 (ENSOMEG00000005720)	pcbp2 (ENSOMEG00000005759)	map3k12 (ENSOMEG00000005820)	aaas (ENSOMEG00000005856)	col2a1a (ENSOMEG00000005965)	GLS2 (ENSOMEG00000006041)
Javanese ricefish	MODERN SPECIES	21	LMOD3 (ENSOJAG00000007078)	FRMD4B (ENSOJAG00000006745)	mitfb (ENSOJAG00000006597)	ENSOJAG00000006566	eif4e3 (ENSOJAG00000006325)	ENSOJAG00000006313	guca1b (ENSOJAG00000006296)	oard1 (ENSOJAG00000006290)	SYT2 (ENSOJAG00000006280)	ENSOJAG00000006263	ENSOJAG00000006258	ENSOJAG00000006093	GRM4 (ENSOJAG00000005734)	hmga1a (ENSOJAG00000023934)	SMIM29 (ENSOJAG00000023933)	pacsin1a (ENSOJAG00000023927) ##22	ilrun (ENSOJAG00000023925)	BLTP3A (ENSOJAG00000023922)	taf11 (ENSOJAG00000023920)	ANKS1A (ENSOJAG00000023912)	ENSOJAG00000023910	ENSOJAG00000023909	scube3 (ENSOJAG00000023855) ##16	ENSOJAG00000023816	pfkfb2a (ENSOJAG00000023547)	DLGAP4 (ENSOJAG00000023366)	pcbp2 (ENSOJAG00000023362)	map3k12 (ENSOJAG00000023237)	aaas (ENSOJAG00000023023)	col2a1a (ENSOJAG00000018902)	GLS2 (ENSOJAG00000018062)
Oryzias_a	ANCESTRAL SPECIES		ENSGT00940000159731	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000177729	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00490000043415.k.a	ENSGT01090000260066.a.a.d.a.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b
Chinese medaka	MODERN SPECIES	38	FRMD4B (ENSOSIG00000023683)	mitfb (ENSOSIG00000023681)	ENSOSIG00000023675	eif4e3 (ENSOSIG00000023673)	ENSOSIG00000023671	guca1b (ENSOSIG00000023670)	oard1 (ENSOSIG00000023667)	SYT2 (ENSOSIG00000023665)	ENSOSIG00000023663	ENSOSIG00000023662	ENSOSIG00000023660	ENSOSIG00000023658	GRM4 (ENSOSIG00000023620)	ENSOSIG00000023598	SMIM29 (ENSOSIG00000023597)	pacsin1a (ENSOSIG00000023593) ##22	ENSOSIG00000023589	BLTP3A (ENSOSIG00000023588)	taf11 (ENSOSIG00000023585)	ANKS1A (ENSOSIG00000023579)	ENSOSIG00000023570	scube3 (ENSOSIG00000023565) ##16	ENSOSIG00000023558	pfkfb2a (ENSOSIG00000023250)	DLGAP4 (ENSOSIG00000023129)	pcbp2 (ENSOSIG00000023126)	map3k12 (ENSOSIG00000023118)	aaas (ENSOSIG00000023097)	col2a1a (ENSOSIG00000020234)	GLS2 (ENSOSIG00000019932)	spryd4 (ENSOSIG00000019911)
Japanese Medaka HdrR	MODERN SPECIES	21	FRMD4B (ENSORLG00000013479)	mitfb (ENSORLG00000013461)	ENSORLG00000013419	EIF4E3 (ENSORLG00000013391)	ENSORLG00000025571	guca1b (ENSORLG00000013359)	oard1 (ENSORLG00000013349)	SYT2 (ENSORLG00000013338)	ENSORLG00000013293	ENSORLG00000013284	ENSORLG00000013280	ENSORLG00000025216	ENSORLG00000013266	ENSORLG00000026301	SMIM29 (ENSORLG00000022781)	pacsin1a (ENSORLG00000013207) ##22	ILRUN (ENSORLG00000013188)	ENSORLG00000023178	BLTP3A (ENSORLG00000013171)	taf11 (ENSORLG00000013132)	ANKS1A (ENSORLG00000013119)	ENSORLG00000013093	scube3 (ENSORLG00000013086) ##16	ENSORLG00000012982	pfkfb2a (ENSORLG00000012972)	ENSORLG00000012896	pcbp2 (ENSORLG00000012872)	map3k12 (ENSORLG00000012844)	aaas (ENSORLG00000012807)	col2a1a (ENSORLG00000012738)	GLS2 (ENSORLG00000012493)
Ovalentaria_B	ANCESTRAL SPECIES	2	ENSGT00940000159731	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000163310.l	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b
Pomacentridae	ANCESTRAL SPECIES	2	ENSGT00940000159731	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b.f	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000163310.l	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b
Pomacentridae_A	ANCESTRAL SPECIES	24	ENSGT00940000159731	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b.f	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000163310.l	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b
Amphiprion	ANCESTRAL SPECIES	15	ENSGT00940000159731	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988.cb	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b.f	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000163310.l	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b
Clown anemonefish	MODERN SPECIES	1283	LMOD3 (ENSAOCG00000022546)	FRMD4B (ENSAOCG00000022672)	MITF (ENSAOCG00000022699)	ENSAOCG00000022757	eif4e3 (ENSAOCG00000022785)	ppp4r2a (ENSAOCG00000022804)	guca1b (ENSAOCG00000002085)	oard1 (ENSAOCG00000022871)	SYT2 (ENSAOCG00000022906)	ENSAOCG00000022927	ENSAOCG00000001658	ENSAOCG00000023054	GRM4 (ENSAOCG00000023110)	hmga1a (ENSAOCG00000023138)	ENSAOCG00000002496	pacsin1a (ENSAOCG00000023170) ##22	SPDEF (ENSAOCG00000023268)	ilrun (ENSAOCG00000023296)	BLTP3A (ENSAOCG00000023342)	taf11 (ENSAOCG00000023354)	ANKS1A (ENSAOCG00000023461)	C1orf116 (ENSAOCG00000023494)	scube3 (ENSAOCG00000023577) ##16	ENSAOCG00000023617
Orange clownfish	MODERN SPECIES	22	LMOD3 (ENSAPEG00000018905)	FRMD4B (ENSAPEG00000018736)	mitfb (ENSAPEG00000018693)	ENSAPEG00000018598	eif4e3 (ENSAPEG00000018566)	ENSAPEG00000018551	guca1b (ENSAPEG00000018546)	oard1 (ENSAPEG00000018533)	SYT2 (ENSAPEG00000018508)	ENSAPEG00000018492	ENSAPEG00000018479	ENSAPEG00000018303	GRM4 (ENSAPEG00000018246)	hmga1a (ENSAPEG00000018199)	ENSAPEG00000018187	pacsin1a (ENSAPEG00000018156) ##22	SPDEF (ENSAPEG00000018147)	ilrun (ENSAPEG00000018121)	BLTP3A (ENSAPEG00000018013)	taf11 (ENSAPEG00000017987)	ANKS1A (ENSAPEG00000017865)	C1orf116 (ENSAPEG00000017825)	scube3 (ENSAPEG00000017769) ##16	ENSAPEG00000017753	ENSAPEG00000017735	pfkfb2a (ENSAPEG00000017662)	ENSAPEG00000017647	DLGAP4 (ENSAPEG00000017580)	pcbp2 (ENSAPEG00000017523)	map3k12 (ENSAPEG00000017464)	aaas (ENSAPEG00000017442)
Spiny chromis	MODERN SPECIES	494													GRM4 (ENSAPOG00000015361)	hmga1a (ENSAPOG00000015286)	ENSAPOG00000015268	pacsin1a (ENSAPOG00000000426) ##22	SPDEF (ENSAPOG00000015237)	ilrun (ENSAPOG00000015034)	BLTP3A (ENSAPOG00000015000)	taf11 (ENSAPOG00000014989)
Bicolor damselfish	MODERN SPECIES	2042																pacsin1a (ENSSPAG00000005569) ##22	SPDEF (ENSSPAG00000005586)	ilrun (ENSSPAG00000005609)	BLTP3A (ENSSPAG00000005626)	taf11 (ENSSPAG00000005652)	ANKS1A (ENSSPAG00000005686)	ENSSPAG00000005906	scube3 (ENSSPAG00000005933) ##16	ENSSPAG00000005971
Cichlidae	ANCESTRAL SPECIES		ENSGT00940000159731	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000163310.l	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b	ENSGT00940000159780
Pseudocrenilabrinae	ANCESTRAL SPECIES	5	ENSGT00940000159731	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000163310.l	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b	ENSGT00940000159780
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	18	ENSGT00940000159731	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000163310.l	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b	ENSGT00940000159780
Haplochromini	ANCESTRAL SPECIES	20	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000177729	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000163310.l	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b	ENSGT00940000159780
Burton s mouthbrooder	MODERN SPECIES	346	LMOD3 (ENSHBUG00000007688)	FRMD4B (ENSHBUG00000007720)	mitfb (ENSHBUG00000007780)	ENSHBUG00000007818	eif4e3 (ENSHBUG00000007849)	ENSHBUG00000001185	guca1b (ENSHBUG00000007882)	oard1 (ENSHBUG00000007914)	SYT2 (ENSHBUG00000007924)	ENSHBUG00000007957	ENSHBUG00000007975	ENSHBUG00000008020	GRM4 (ENSHBUG00000008056)	ENSHBUG00000008088	SMIM29 (ENSHBUG00000008097)	pacsin1a (ENSHBUG00000008147) ##22	ilrun (ENSHBUG00000008175)	BLTP3A (ENSHBUG00000008196)	taf11 (ENSHBUG00000008209)	ANKS1A (ENSHBUG00000008381)	ENSHBUG00000008402	scube3 (ENSHBUG00000008582) ##16	ENSHBUG00000008603	PFKFB2 (ENSHBUG00000008677)	ENSHBUG00000008692	DLGAP4 (ENSHBUG00000008711)	pcbp2 (ENSHBUG00000008769)	map3k12 (ENSHBUG00000008855)	aaas (ENSHBUG00000008871)	col2a1a (ENSHBUG00000011436)	GLS2 (ENSHBUG00000001190)
Haplochromini_A	ANCESTRAL SPECIES	17	ENSGT00940000159731	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000163310.l	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b	ENSGT00940000159780
Haplochromini_B	ANCESTRAL SPECIES	14	ENSGT00940000159731	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000177729	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b	ENSGT00940000159780	ENSGT00940000158414
Zebra mbuna	MODERN SPECIES	1103	LMOD3 (ENSMZEG00005026257)	FRMD4B (ENSMZEG00005026256)	mitfb (ENSMZEG00005026253)	ENSMZEG00005026252	eif4e3 (ENSMZEG00005026251)	ENSMZEG00005026250	guca1b (ENSMZEG00005026249)	oard1 (ENSMZEG00005026247)	SYT2 (ENSMZEG00005026246)	ENSMZEG00005026245	ENSMZEG00005026244	ENSMZEG00005026230	GRM4 (ENSMZEG00005026226)	ENSMZEG00005026223	SMIM29 (ENSMZEG00005026222)	pacsin1a (ENSMZEG00005026221) ##22	ilrun (ENSMZEG00005026220)	BLTP3A (ENSMZEG00005026216)	taf11 (ENSMZEG00005026214)	ANKS1A (ENSMZEG00005026203)	ENSMZEG00005026201	scube3 (ENSMZEG00005026197) ##16	ENSMZEG00005026196	PFKFB2 (ENSMZEG00005026194)	ENSMZEG00005026192	ENSMZEG00005026190	pcbp2 (ENSMZEG00005026186)	map3k12 (ENSMZEG00005026185)	aaas (ENSMZEG00005026184)	col2a1a (ENSMZEG00005026136)	GLS2 (ENSMZEG00005026115)
P. nyererei	MODERN SPECIES	339	lmod3 (ENSPNYG00000017518)	FRMD4B (ENSPNYG00000017559)	mitfb (ENSPNYG00000017638)	ENSPNYG00000017690	eif4e3 (ENSPNYG00000017704)	ENSPNYG00000017730	oard1 (ENSPNYG00000017743)	guca1b (ENSPNYG00000017770)	SYT2 (ENSPNYG00000017859)	ENSPNYG00000017879	ENSPNYG00000017892	ENSPNYG00000017905	GRM4 (ENSPNYG00000018018)	hmga1a (ENSPNYG00000018055)	SMIM29 (ENSPNYG00000018092)	pacsin1a (ENSPNYG00000018149) ##22	ilrun (ENSPNYG00000018391)	BLTP3A (ENSPNYG00000018412)	taf11 (ENSPNYG00000018423)	ANKS1A (ENSPNYG00000018443)	ENSPNYG00000018474	scube3 (ENSPNYG00000018503) ##16	ENSPNYG00000018602	PFKFB2 (ENSPNYG00000018657)	ENSPNYG00000018720	ENSPNYG00000018763	pcbp2 (ENSPNYG00000018792)	map3k12 (ENSPNYG00000018837)	aaas (ENSPNYG00000018888)	col2a1a (ENSPNYG00000019240)	GLS2 (ENSPNYG00000020883)
Lyretail cichlid	MODERN SPECIES	321	arl6ip5b (ENSNBRG00000011929)	FRMD4B (ENSNBRG00000011966)	mitfb (ENSNBRG00000012137)	ENSNBRG00000012176	eif4e3 (ENSNBRG00000012239)	ENSNBRG00000012260	oard1 (ENSNBRG00000012273)	guca1b (ENSNBRG00000012287)	SYT2 (ENSNBRG00000012295)	ENSNBRG00000012353	ENSNBRG00000012364	ENSNBRG00000012393	GRM4 (ENSNBRG00000012602)	hmga1a (ENSNBRG00000012619)	SMIM29 (ENSNBRG00000012639)	pacsin1a (ENSNBRG00000012655) ##22	ilrun (ENSNBRG00000012669)	BLTP3A (ENSNBRG00000012691)	taf11 (ENSNBRG00000012729)	ENSNBRG00000012735	ENSNBRG00000012744	ENSNBRG00000012757	ENSNBRG00000012804	scube3 (ENSNBRG00000012815) ##16	ENSNBRG00000012863	pfkfb2a (ENSNBRG00000012892)
Nile tilapia	MODERN SPECIES	12	LMOD3 (ENSONIG00000041416)	FRMD4B (ENSONIG00000016949)	mitfb (ENSONIG00000016952)	SYT2 (ENSONIG00000016962)	ENSONIG00000016955	eif4e3 (ENSONIG00000016959)	ENSONIG00000016960	guca1b (ENSONIG00000016961)	oard1 (ENSONIG00000039334)	ENSONIG00000031575	ENSONIG00000016963	ENSONIG00000016965	GRM4 (ENSONIG00000016968)	hmga1a (ENSONIG00000016976)	ENSONIG00000029046	pacsin1a (ENSONIG00000016981) ##22	ilrun (ENSONIG00000016983)	BLTP3A (ENSONIG00000016984)	taf11 (ENSONIG00000016989)	ANKS1A (ENSONIG00000016990)	ENSONIG00000016992	scube3 (ENSONIG00000016993) ##16	ENSONIG00000027632	PFKFB2 (ENSONIG00000016995)	ENSONIG00000017000	ENSONIG00000030798	pcbp2 (ENSONIG00000017003)	map3k12 (ENSONIG00000017012)	aaas (ENSONIG00000017015)	col2a1a (ENSONIG00000017019)	GLS2 (ENSONIG00000017028)
Midas cichlid	MODERN SPECIES		arl6ip5b (ENSACIG00000000063)	LMOD3 (ENSACIG00000000062)	mitfb (ENSACIG00000000061)	ENSACIG00000000060	eif4e3 (ENSACIG00000000059)	PPP4R2 (ENSACIG00000000058)	guca1b (ENSACIG00000000057)	oard1 (ENSACIG00000000056)	SYT2 (ENSACIG00000000055)	ENSACIG00000000054	ENSACIG00000000053	ENSACIG00000000052	GRM4 (ENSACIG00000000051)	ENSACIG00000000050	ENSACIG00000000049	pacsin1a (ENSACIG00000000048) ##22	ilrun (ENSACIG00000000047)	BLTP3A (ENSACIG00000000046)	taf11 (ENSACIG00000000045)	ANKS1A (ENSACIG00000000044)	ENSACIG00000000043	scube3 (ENSACIG00000000042) ##16	ENSACIG00000000041	ENSACIG00000000040	PFKFB2 (ENSACIG00000000039)	ENSACIG00000000038	ENSACIG00000000037	ENSACIG00000000036	pcbp2 (ENSACIG00000000035)	map3k12 (ENSACIG00000000034)	aaas (ENSACIG00000000033)
Percomorphaceae_C	ANCESTRAL SPECIES	4	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000178117	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b
Eupercaria	ANCESTRAL SPECIES	4	ENSGT00940000159731	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b
Tetraodontidae	ANCESTRAL SPECIES	2	ENSGT00940000159731	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000177729	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT01000000217669	ENSGT00940000153185.a.a.b ##16	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b
Tetraodon	MODERN SPECIES	24	UBA3 (ENSTNIG00000012560)	arl6ip5b (ENSTNIG00000012561)	LMOD3 (ENSTNIG00000012562)	FRMD4B (ENSTNIG00000012563)	mitfb (ENSTNIG00000012564)	ENSTNIG00000012565	eif4e3 (ENSTNIG00000012566)	guca1b (ENSTNIG00000012567)	oard1 (ENSTNIG00000012568)	SYT2 (ENSTNIG00000012569)	ENSTNIG00000012570	ENSTNIG00000012571	ENSTNIG00000012572	GRM4 (ENSTNIG00000012573)	ENSTNIG00000012574	pacsin1a (ENSTNIG00000012576) ##22	SPDEF (ENSTNIG00000001703)	ilrun (ENSTNIG00000012577)	BLTP3A (ENSTNIG00000012578)	taf11 (ENSTNIG00000012579)	ANKS1A (ENSTNIG00000012580)	scube3 (ENSTNIG00000012581) ##16	ENSTNIG00000012582	pfkfb2a (ENSTNIG00000012583)	DLGAP4 (ENSTNIG00000012584)	pcbp2 (ENSTNIG00000012585)	map3k12 (ENSTNIG00000012586)	aaas (ENSTNIG00000012587)	col2a1a (ENSTNIG00000012588)	GLS2 (ENSTNIG00000012589)	spryd4 (ENSTNIG00000012590)
Fugu	MODERN SPECIES	15	FRMD4B (ENSTRUG00000031158)	mitfb (ENSTRUG00000012080)	ENSTRUG00000011898	eif4e3 (ENSTRUG00000029505)	ENSTRUG00000011777	guca1b (ENSTRUG00000011703)	ENSTRUG00000011698	SYT2 (ENSTRUG00000011452)	ENSTRUG00000026763	ENSTRUG00000028060	ENSTRUG00000020555	ENSTRUG00000027214	ENSTRUG00000011185	ENSTRUG00000021298	ENSTRUG00000030849	pacsin1a (ENSTRUG00000011060) ##22	SPDEF (ENSTRUG00000011048)	ILRUN (ENSTRUG00000011005)	BLTP3A (ENSTRUG00000010893)	taf11 (ENSTRUG00000021221)	ANKS1A (ENSTRUG00000010524)	ENSTRUG00000031987	scube3 (ENSTRUG00000010346) ##16	ENSTRUG00000028258	pfkfb2a (ENSTRUG00000009968)	ENSTRUG00000009651	pcbp2 (ENSTRUG00000009361)	map3k12 (ENSTRUG00000009106)	aaas (ENSTRUG00000008818)	GLS2 (ENSTRUG00000002880)	spryd4 (ENSTRUG00000028780)
Eupecaria_A	ANCESTRAL SPECIES	4	ENSGT00940000159731	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b
Ballan wrasse	MODERN SPECIES	4					eif4e3 (ENSLBEG00000008251)	ENSLBEG00000008284	guca1b (ENSLBEG00000008316)	oard1 (ENSLBEG00000008410)	SYT2 (ENSLBEG00000008433)	ENSLBEG00000008516	ENSLBEG00000008572	ENSLBEG00000008629	GRM4 (ENSLBEG00000008769)	hmga1a (ENSLBEG00000008947)	SMIM29 (ENSLBEG00000008973)	pacsin1a (ENSLBEG00000009020) ##22	SPDEF (ENSLBEG00000009095)	ilrun (ENSLBEG00000009112)	BLTP3A (ENSLBEG00000009223)	taf11 (ENSLBEG00000009596)	ANKS1A (ENSLBEG00000009637)	ENSLBEG00000009698	scube3 (ENSLBEG00000009740) ##16	ENSLBEG00000009848	pfkfb2a (ENSLBEG00000009916)	ENSLBEG00000009987	DLGAP4 (ENSLBEG00000010025)	pcbp2 (ENSLBEG00000010080)	map3k12 (ENSLBEG00000010187)	aaas (ENSLBEG00000010250)	col2a1a (ENSLBEG00000010331)
Eupecaria_B	ANCESTRAL SPECIES	5	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000178117	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b
Eupecaria_C	ANCESTRAL SPECIES	5	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000177729	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b
Gilthead seabream	MODERN SPECIES	21	LMOD3 (ENSSAUG00010005019)	FRMD4B (ENSSAUG00010004427)	mitfb (ENSSAUG00010004313)	ENSSAUG00010004303	eif4e3 (ENSSAUG00010004299)	ppp4r2a (ENSSAUG00010004280)	guca1b (ENSSAUG00010004275)	oard1 (ENSSAUG00010004272)	SYT2 (ENSSAUG00010004264)	ENSSAUG00010004255	ENSSAUG00010004252	ENSSAUG00010004241	GRM4 (ENSSAUG00010004196)	ENSSAUG00010004159	ENSSAUG00010004092	pacsin1a (ENSSAUG00010023975) ##22	SPDEF (ENSSAUG00010023973)	ilrun (ENSSAUG00010023972)	BLTP3A (ENSSAUG00010023962)	taf11 (ENSSAUG00010023960)	ANKS1A (ENSSAUG00010023655)	ENSSAUG00010023631	scube3 (ENSSAUG00010023261) ##16	ENSSAUG00010023247	ENSSAUG00010023246	pfkfb2a (ENSSAUG00010021414)	UQCC5 (ENSSAUG00010021391)	OGN2 (ENSSAUG00010021388)	YWHAB (ENSSAUG00010021386)	pabpc1l (ENSSAUG00010021044)	rbm39b (ENSSAUG00010020893)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	15	ENSGT00940000159731	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b
Large yellow croaker	MODERN SPECIES	487	FRMD4B (ENSLCRG00005006784)	mitfb (ENSLCRG00005005088)	ENSLCRG00005004789	ENSLCRG00005004742	eif4e3 (ENSLCRG00005004729)	ppp4r2a (ENSLCRG00005004700)	guca1b (ENSLCRG00005004667)	oard1 (ENSLCRG00005004663)	SYT2 (ENSLCRG00005004649)	ENSLCRG00005004624	ENSLCRG00005004608	ENSLCRG00005004592	GRM4 (ENSLCRG00005003603)	ENSLCRG00005003421	SMIM29 (ENSLCRG00005003415)	pacsin1a (ENSLCRG00005022218) ##22	SPDEF (ENSLCRG00005022189)	ENSLCRG00005022185	ENSLCRG00005022141	ENSLCRG00005022103	ENSLCRG00005022098	trappc6b (ENSLCRG00005022080)	ENSLCRG00005022051	gpr173 (ENSLCRG00005022028)	suv39h1b (ENSLCRG00005022024)	ENSLCRG00005022004	porcnl (ENSLCRG00005021971)	MYT1 (ENSLCRG00005021923)	ENSLCRG00005021920	ENSLCRG00005021918	asxl1 (ENSLCRG00005021910)
European seabass	MODERN SPECIES	14	UBA3 (ENSDLAG00005014726)	ARL6IP5 (ENSDLAG00005015672)	LMOD3 (ENSDLAG00005015682)	FRMD4B (ENSDLAG00005015693)	MITF (ENSDLAG00005016175)	ENSDLAG00005016425	ENSDLAG00005032959	ENSDLAG00005029171	ENSDLAG00005016562	ENSDLAG00005032742	ENSDLAG00005016624	ENSDLAG00005016641	ENSDLAG00005016672	hmga1a (ENSDLAG00005016792)	ENSDLAG00005030656	pacsin1a (ENSDLAG00005016814) ##22	SPDEF (ENSDLAG00005016913)	ILRUN (ENSDLAG00005026599)	BLTP3A (ENSDLAG00005016949)	TAF11 (ENSDLAG00005027404)	ANKS1A (ENSDLAG00005017188)	ENSDLAG00005018775	SCUBE3 (ENSDLAG00005018821) ##16	ENSDLAG00005020455	ENSDLAG00005020550	ENSDLAG00005022197	pcbp2 (ENSDLAG00005022214)	ENSDLAG00005029050	ENSDLAG00005034247	aaas (ENSDLAG00005022676)	ENSDLAG00005024784
Perciformes	ANCESTRAL SPECIES	4	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000178117	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b
Cottioidei	ANCESTRAL SPECIES	2	ENSGT00390000008631.a.o.b	ENSGT00940000159731	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000163310.l	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b
Lumpfish	MODERN SPECIES	22	LMOD3 (ENSCLMG00005016194)	FRMD4B (ENSCLMG00005016199)	mitfb (ENSCLMG00005016206)	ENSCLMG00005016275	eif4e3 (ENSCLMG00005016277)	ENSCLMG00005016281	guca1b (ENSCLMG00005016282)	oard1 (ENSCLMG00005016285)	SYT2 (ENSCLMG00005016314)	ENSCLMG00005016315	ENSCLMG00005002965	ENSCLMG00005002982	GRM4 (ENSCLMG00005003011)	ENSCLMG00005003026	SMIM29 (ENSCLMG00005003029)	pacsin1a (ENSCLMG00005003034) ##22	SPDEF (ENSCLMG00005003041)	ILRUN (ENSCLMG00005003045)	BLTP3A (ENSCLMG00005003054)	taf11 (ENSCLMG00005003060)	ANKS1A (ENSCLMG00005003104)	ENSCLMG00005003263	scube3 (ENSCLMG00005003280) ##16	ENSCLMG00005004047	PFKFB2 (ENSCLMG00005004090)	ENSCLMG00005010726	DLGAP4 (ENSCLMG00005010727)	pcbp2 (ENSCLMG00005010728)	ENSCLMG00005010729	map3k12 (ENSCLMG00005010730)	aaas (ENSCLMG00005010733)
Stickleback	MODERN SPECIES	11	LMOD3 (ENSGACG00000003438)	FRMD4B (ENSGACG00000003431)	MITF (ENSGACG00000003425)	ENSGACG00000003402	eif4e3 (ENSGACG00000003392)	ENSGACG00000003388	guca1b (ENSGACG00000003369)	oard1 (ENSGACG00000003364)	SYT2 (ENSGACG00000003359)	ENSGACG00000003354	ENSGACG00000003351	ENSGACG00000003349	ENSGACG00000003339	GRM4 (ENSGACG00000003323)	SMIM29 (ENSGACG00000003322)	pacsin1a (ENSGACG00000003301) ##22	SPDEF (ENSGACG00000003298)	ilrun (ENSGACG00000003293)	BLTP3A (ENSGACG00000003278)	taf11 (ENSGACG00000003275)	ANKS1A (ENSGACG00000003255)	ENSGACG00000003252	scube3 (ENSGACG00000003249) ##16	ENSGACG00000003245	pfkfb2a (ENSGACG00000003225)	DLGAP4 (ENSGACG00000003221)	pcbp2 (ENSGACG00000003197)	map3k12 (ENSGACG00000003194)	aaas (ENSGACG00000003128)	col2a1a (ENSGACG00000003112)	GLS2 (ENSGACG00000003096)
Perciformes_a	ANCESTRAL SPECIES	2	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000178117	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b
Channel bull blenny	MODERN SPECIES	21	arl6ip5b (ENSCGOG00000023690)	FRMD4B (ENSCGOG00000023692)	mitfb (ENSCGOG00000000480)	ENSCGOG00000000562	eif4e3 (ENSCGOG00000000575)	ppp4r2a (ENSCGOG00000000601)	guca1b (ENSCGOG00000000606)	oard1 (ENSCGOG00000000615)	SYT2 (ENSCGOG00000000622)	ENSCGOG00000000630	ENSCGOG00000000634	ENSCGOG00000000639	GRM4 (ENSCGOG00000000653)	ENSCGOG00000000668	SMIM29 (ENSCGOG00000000672)	pacsin1a (ENSCGOG00000000682) ##22	SPDEF (ENSCGOG00000000705)	ilrun (ENSCGOG00000000707)	BLTP3A (ENSCGOG00000000711)	taf11 (ENSCGOG00000000721)	ANKS1A (ENSCGOG00000000723)	ENSCGOG00000000747	scube3 (ENSCGOG00000000833) ##16	ENSCGOG00000001037	pfkfb2a (ENSCGOG00000001061)	ENSCGOG00000001967	pcbp2 (ENSCGOG00000001972)	map3k12 (ENSCGOG00000002031)	aaas (ENSCGOG00000002273)	col2a1a (ENSCGOG00000002456)	GLS2 (ENSCGOG00000002572)
Pike perch	MODERN SPECIES	31	mitfb (ENSSLUG00000024839)	ENSSLUG00000024830	ENSSLUG00000024823	eif4e3 (ENSSLUG00000024819)	ENSSLUG00000024814	guca1b (ENSSLUG00000024812)	oard1 (ENSSLUG00000024810)	SYT2 (ENSSLUG00000024808)	ENSSLUG00000024803	ENSSLUG00000024799	ENSSLUG00000024788	ENSSLUG00000024785	GRM4 (ENSSLUG00000024781)	hmga1a (ENSSLUG00000024780)	SMIM29 (ENSSLUG00000024779)	pacsin1a (ENSSLUG00000024771) ##22	SPDEF (ENSSLUG00000024768)	ilrun (ENSSLUG00000024766)	BLTP3A (ENSSLUG00000024763)	taf11 (ENSSLUG00000024762)	ANKS1A (ENSSLUG00000024759)	ENSSLUG00000024756	scube3 (ENSSLUG00000024590) ##16	ENSSLUG00000024519	PFKFB2 (ENSSLUG00000023258)	DLGAP4 (ENSSLUG00000023132)	pcbp2 (ENSSLUG00000022994)	map3k12 (ENSSLUG00000022911)	aaas (ENSSLUG00000022524)	col2a1a (ENSSLUG00000015542)	GLS2 (ENSSLUG00000014900)
Percomorphaceae_D	ANCESTRAL SPECIES	4	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000178117	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b
Anabantaria	ANCESTRAL SPECIES	3	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000178117	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b
Zig-zag eel	MODERN SPECIES	21	MITF (ENSMAMG00000024182)	ENSMAMG00000026584	ENSMAMG00000024181	EIF4E3 (ENSMAMG00000024995)	ENSMAMG00000024179	ENSMAMG00000024178	ENSMAMG00000024177	ENSMAMG00000024176	ENSMAMG00000024175	ENSMAMG00000024174	ENSMAMG00000028098	ENSMAMG00000024172	ENSMAMG00000024171	ENSMAMG00000024170	ENSMAMG00000024733	PACSIN1 (ENSMAMG00000024168) ##22	SPDEF (ENSMAMG00000024167)	ILRUN (ENSMAMG00000024166)	BLTP3A (ENSMAMG00000024165)	TAF11 (ENSMAMG00000027828)	ANKS1A (ENSMAMG00000024163)	ENSMAMG00000028001	SCUBE3 (ENSMAMG00000024161) ##16	ENSMAMG00000024160	ENSMAMG00000024159	ENSMAMG00000027810	ENSMAMG00000024157	pcbp2 (ENSMAMG00000024156)	ENSMAMG00000024155	aaas (ENSMAMG00000024154)	col2a1a (ENSMAMG00000024153)
Anabantoidei	ANCESTRAL SPECIES	2	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000178117	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b
Siamese fighting fish	MODERN SPECIES	18						ENSBSLG00000015782	ENSBSLG00000015777	ENSBSLG00000015774	ENSBSLG00000015769	SYT2 (ENSBSLG00000015762)	ENSBSLG00000015743	ENSBSLG00000015723	ENSBSLG00000015263	hmga1a (ENSBSLG00000015172)	ENSBSLG00000015150	pacsin1a (ENSBSLG00000014934) ##22	SPDEF (ENSBSLG00000014928)	ilrun (ENSBSLG00000014922)	BLTP3A (ENSBSLG00000014475)	taf11 (ENSBSLG00000014455)	ANKS1A (ENSBSLG00000013397)	ENSBSLG00000012415	scube3 (ENSBSLG00000010867) ##16	ENSBSLG00000010501	ENSBSLG00000010215	hsd17b10 (ENSBSLG00000010206)	FAM120C (ENSBSLG00000009766)	ENSBSLG00000009461	lima1a (ENSBSLG00000009446)	spryd3 (ENSBSLG00000009424)	igfbp6b (ENSBSLG00000009412)
Climbing perch	MODERN SPECIES	20	LMOD3 (ENSATEG00000028174)	FRMD4B (ENSATEG00000020382)	MITF (ENSATEG00000025665)	ENSATEG00000020274	EIF4E3 (ENSATEG00000028400)	ENSATEG00000020209	ENSATEG00000026466	ENSATEG00000020099	ENSATEG00000020079	ENSATEG00000020037	ENSATEG00000020017	ENSATEG00000019912	ENSATEG00000019879	hmga1a (ENSATEG00000029103)	ENSATEG00000027835	pacsin1a (ENSATEG00000019801) ##22	SPDEF (ENSATEG00000019791)	ILRUN (ENSATEG00000019774)	BLTP3A (ENSATEG00000019758)	TAF11 (ENSATEG00000019727)	ENSATEG00000019715	ANKS1A (ENSATEG00000019572)	ENSATEG00000019537	SCUBE3 (ENSATEG00000019449) ##16	ENSATEG00000026104	ENSATEG00000019363	ENSATEG00000028543	pcbp2 (ENSATEG00000019272)	ENSATEG00000019222	aaas (ENSATEG00000019204)	col2a1a (ENSATEG00000017520)
Carangaria	ANCESTRAL SPECIES	2	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000178117	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b
Pleuronectoidei	ANCESTRAL SPECIES	24	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000178117	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b
Turbot	MODERN SPECIES	2	PRIM1 (ENSSMAG00000000511)	RND1 (ENSSMAG00000000522)	ddx23 (ENSSMAG00000000529)	cacnb3a (ENSSMAG00000000545)	ADCY6 (ENSSMAG00000000552)	ENSSMAG00000000568	ENSSMAG00000000595	ENSSMAG00000000601	spryd4 (ENSSMAG00000032069)	ENSSMAG00000000622	col2a1a (ENSSMAG00000000707)	aaas (ENSSMAG00000005124)	ENSSMAG00000005155	pcbp2 (ENSSMAG00000005182)	ENSSMAG00000033675	PACSIN1 (ENSSMAG00000005246) ##22	SPDEF (ENSSMAG00000005268)	ILRUN (ENSSMAG00000030395)	BLTP3A (ENSSMAG00000005317)	TAF11 (ENSSMAG00000005281)	ANKS1A (ENSSMAG00000005327)	ENSSMAG00000005398	SCUBE3 (ENSSMAG00000005434) ##16	ENSSMAG00000005530	ENSSMAG00000005545	ENSSMAG00000029604	ENSSMAG00000026827	ENSSMAG00000005616	ENSSMAG00000005664	ENSSMAG00000005929	ENSSMAG00000005944
Tongue sole	MODERN SPECIES	1	UBA3 (ENSCSEG00000018598)	LMOD3 (ENSCSEG00000018592)	arl6ip5b (ENSCSEG00000018585)	FRMD4B (ENSCSEG00000018511)	mitfb (ENSCSEG00000018476)	ENSCSEG00000018463	eif4e3 (ENSCSEG00000018457)	guca1b (ENSCSEG00000018453)	ENSCSEG00000018435	SYT2 (ENSCSEG00000018415)	ENSCSEG00000018403	ENSCSEG00000017902	ENSCSEG00000017881	hmga1a (ENSCSEG00000017875)	SMIM29 (ENSCSEG00000017870)	pacsin1a (ENSCSEG00000017855) ##22	SPDEF (ENSCSEG00000017844)	ilrun (ENSCSEG00000017831)	ENSCSEG00000017811	taf11 (ENSCSEG00000017802)	ANKS1A (ENSCSEG00000017717)	ENSCSEG00000017696	scube3 (ENSCSEG00000017662) ##16	ENSCSEG00000017618	irx7 (ENSCSEG00000017607)	ENSCSEG00000017598	PLEKHG5 (ENSCSEG00000017546)	NOL9 (ENSCSEG00000017536)	ZBTB48 (ENSCSEG00000017531)	klhl21 (ENSCSEG00000017524)	ENSCSEG00000017513
Carangaria_A	ANCESTRAL SPECIES	1	ENSGT00940000159731	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b
Barramundi perch	MODERN SPECIES	53	ENSLCAG00010011054	FRMD4B (ENSLCAG00010010999)	mitfb (ENSLCAG00010010894)	ENSLCAG00010010882	eif4e3 (ENSLCAG00010010884)	ppp4r2a (ENSLCAG00010010880)	guca1b (ENSLCAG00010010874)	oard1 (ENSLCAG00010010869)	SYT2 (ENSLCAG00010010866)	ENSLCAG00010010863	ENSLCAG00010010857	ENSLCAG00010010848	GRM4 (ENSLCAG00010010829)	ENSLCAG00010010822	SMIM29 (ENSLCAG00010010818)	pacsin1a (ENSLCAG00010010814) ##22	SPDEF (ENSLCAG00010010811)	ilrun (ENSLCAG00010010808)	BLTP3A (ENSLCAG00010010801)	taf11 (ENSLCAG00010010799)	ANKS1A (ENSLCAG00010010775)	ENSLCAG00010010765	scube3 (ENSLCAG00010010627) ##16	ENSLCAG00010010593
Seriola	ANCESTRAL SPECIES	8	ENSGT00940000159731	ENSGT01020000230354.A.a.b	ENSGT00940000156326.a.a	ENSGT00940000167980	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000167932	ENSGT00410000025882.b	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000154129.hd	ENSGT00940000159006.c.b	ENSGT00390000009446	ENSGT00940000155224.c.b	ENSGT00390000010463.a.a.a.b	ENSGT00940000159780
Yellowtail amberjack	MODERN SPECIES	2725	FRMD4B (ENSSLDG00000007437)	mitfb (ENSSLDG00000007666)	ENSSLDG00000007698	eif4e3 (ENSSLDG00000007755)	ENSSLDG00000007800	guca1b (ENSSLDG00000007830)	oard1 (ENSSLDG00000007846)	ENSSLDG00000007868	ENSSLDG00000007886	ENSSLDG00000007911	ENSSLDG00000007924	GRM4 (ENSSLDG00000007949)	hmga1a (ENSSLDG00000007999)	SMIM29 (ENSSLDG00000008016)	ENSSLDG00000008031	pacsin1a (ENSSLDG00000008056) ##22	SPDEF (ENSSLDG00000008101)	ilrun (ENSSLDG00000008116)	BLTP3A (ENSSLDG00000008151)	taf11 (ENSSLDG00000008190)	ANKS1A (ENSSLDG00000008265)	ENSSLDG00000008472	scube3 (ENSSLDG00000008542) ##16	ENSSLDG00000008665	PFKFB2 (ENSSLDG00000008710)	DLGAP4 (ENSSLDG00000008798)	pcbp2 (ENSSLDG00000008839)	map3k12 (ENSSLDG00000008892)	aaas (ENSSLDG00000008933)	col2a1a (ENSSLDG00000009047)	GLS2 (ENSSLDG00000009348)
Greater amberjack	MODERN SPECIES	228	ENSSDUG00000020303	guca1b (ENSSDUG00000020255)	oard1 (ENSSDUG00000020232)	ENSSDUG00000020215	SYT2 (ENSSDUG00000020202)	ENSSDUG00000020179	ENSSDUG00000020170	ENSSDUG00000020145	ENSSDUG00000020135	ENSSDUG00000020108	ENSSDUG00000020073	ENSSDUG00000019643	GRM4 (ENSSDUG00000019602)	hmga1a (ENSSDUG00000019583)	SMIM29 (ENSSDUG00000019574)	pacsin1a (ENSSDUG00000019543) ##22	SPDEF (ENSSDUG00000019525)	ilrun (ENSSDUG00000019512)	BLTP3A (ENSSDUG00000019488)	taf11 (ENSSDUG00000019473)	ANKS1A (ENSSDUG00000019353)	ENSSDUG00000019314	scube3 (ENSSDUG00000019266) ##16	ENSSDUG00000019249
Cod	MODERN SPECIES		FRMD4B (ENSGMOG00000010202)	ENSGMOG00000033892	MITF (ENSGMOG00000010175)	ENSGMOG00000010153	EIF4E3 (ENSGMOG00000010140)	ENSGMOG00000010131	ENSGMOG00000010119	ENSGMOG00000010113	ENSGMOG00000015030	ENSGMOG00000036092	ENSGMOG00000010089	ENSGMOG00000010082	ENSGMOG00000010065	hmga1a (ENSGMOG00000024668)	ENSGMOG00000026218	pacsin1a (ENSGMOG00000010048) ##22	SPDEF (ENSGMOG00000023283)	ILRUN (ENSGMOG00000010041)	BLTP3A (ENSGMOG00000010011)	TAF11 (ENSGMOG00000010004)	ANKS1A (ENSGMOG00000009954)	ENSGMOG00000035233	SCUBE3 (ENSGMOG00000009879) ##16	ENSGMOG00000009821	ENSGMOG00000023581	ENSGMOG00000028292	pcbp2 (ENSGMOG00000009787)	ENSGMOG00000009765	aaas (ENSGMOG00000009746)	col2a1a (ENSGMOG00000009692)	ENSGMOG00000009670
Protacanthopterygii	ANCESTRAL SPECIES	6	ENSGT00730000111641.a	ENSGT00940000165920.a	ENSGT00940000155865.c.a	ENSGT00940000162859.p	ENSGT00940000157530.a	ENSGT00390000006988	ENSGT00940000157586.f	ENSGT00940000166065.b	ENSGT00390000013981.a	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a	ENSGT00940000177729	ENSGT00410000025882.b	ENSGT00940000157392.p	ENSGT00440000034918.h	ENSGT00950000182973.a.c.a.d ##22	ENSGT00940000157549.b	ENSGT00490000043415.k.a	ENSGT00730000110997	ENSGT00600000084428.a	ENSGT00390000013228	ENSGT00940000155806.c.a	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b ##16	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155308.c	ENSGT00940000165533.d.b	ENSGT01050000244866.B.c.b	ENSGT00950000183094.b.a	ENSGT00390000009748
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	28	ENSGT00940000155865.c.a.c	ENSGT00940000162859.p.e	ENSGT00940000157530.a.h	ENSGT00390000006988.fb	ENSGT00940000157586.f.d	ENSGT00940000166065.b.d	ENSGT00390000013981.a.b	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a.c	ENSGT00940000177729.b	ENSGT00410000025882.b.d	ENSGT00940000157392.p	ENSGT00940000157882.j.a	ENSGT00440000034918.g.b.a	ENSGT00440000034918.h	ENSGT00950000182973.a.c.a.d.c ##22	ENSGT00940000157549.b.a	ENSGT00490000043415.k.a.b	ENSGT00730000110997.i.a	ENSGT00600000084428.a.i	ENSGT00390000013228	ENSGT00940000155806.c.a.d	ENSGT00390000017874.b.b	ENSGT00940000153185.a.a.b.h ##16	ENSGT00940000154967.a.a.a.b	ENSGT00950000182835.d.a.k.b.j	ENSGT00940000155308.c.`b	ENSGT00940000165533.d.a	ENSGT00950000183094.b.a.l
Huchen	MODERN SPECIES	332										ENSHHUG00000028801	ENSHHUG00000028837	ENSHHUG00000028848	nudt3a (ENSHHUG00000028853)	ENSHHUG00000028858	RPS10 (ENSHHUG00000028863)	pacsin1a (ENSHHUG00000028908) ##22	SPDEF (ENSHHUG00000028931)	ilrun (ENSHHUG00000028937)	SNRPC (ENSHHUG00000028942)	BLTP3A (ENSHHUG00000028983)	taf11 (ENSHHUG00000029034)	ANKS1A (ENSHHUG00000029041)	C1orf116 (ENSHHUG00000029058)	scube3 (ENSHHUG00000029074) ##16	ENSHHUG00000029387	pfkfb2a (ENSHHUG00000029406)	ENSHHUG00000029575	ENSHHUG00000029579	ENSHHUG00000029606	rprd1b (ENSHHUG00000029612)	VSTM2L (ENSHHUG00000029630)
Salmoninae_a	ANCESTRAL SPECIES	27	ENSGT00940000167980	ENSGT00940000155865.c.a.c	ENSGT00940000162859.p.e	ENSGT00940000157530.a.h	ENSGT00390000006988.fb	ENSGT00940000157586.f.d	ENSGT00940000166065.b.d	ENSGT00390000013981.a.b	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a.c	ENSGT00940000177729.b	ENSGT00410000025882.b.d	ENSGT00940000157392.p	ENSGT00940000157882.j.a	ENSGT00440000034918.g.b.a	ENSGT00950000182973.a.c.a.d.c ##22	ENSGT00940000157549.b.a	ENSGT00490000043415.k.a.b	ENSGT00730000110997.i.a	ENSGT00600000084428.a.i	ENSGT00390000013228	ENSGT00940000155806.c.a.d	ENSGT00390000017874.b.b	ENSGT00940000153185.a.a.b.h ##16	ENSGT00940000154967.a.a.a.b	ENSGT00950000182835.d.a.k.b.j	ENSGT00940000155308.c.`b	ENSGT00940000165533.d.a	ENSGT00950000183094.b.a.l	ENSGT00940000159381.c.b	ENSGT00390000006931.b
Salmo	ANCESTRAL SPECIES	16	ENSGT00940000167980	ENSGT00940000155865.c.a.c	ENSGT00940000162859.p.e	ENSGT00940000157530.a.h	ENSGT00390000006988.fb	ENSGT00940000157586.f.d	ENSGT00940000166065.b.d	ENSGT00390000013981.a.b	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a.c	ENSGT00940000177729.b	ENSGT00410000025882.b.d	ENSGT00940000157392.p	ENSGT00940000157882.j.a	ENSGT00440000034918.g.b.a	ENSGT00950000182973.a.c.a.d.c ##22	ENSGT00940000157549.b.a	ENSGT00490000043415.k.a.b	ENSGT00730000110997.i.a	ENSGT00600000084428.a.i	ENSGT00390000013228	ENSGT00940000155806.c.a.d	ENSGT00390000017874.b.b	ENSGT00940000153185.a.a.b.h ##16	ENSGT00940000154967.a.a.a.b	ENSGT00950000182835.d.a.k.b.j	ENSGT00940000155308.c.`b	ENSGT00940000165533.d.a	ENSGT00950000183094.b.a.l	ENSGT00940000159381.c.b	ENSGT00390000006931.b
Atlantic salmon	MODERN SPECIES	6	ENSSSAG00000040772	ENSSSAG00000040752	ENSSSAG00000091686	ENSSSAG00000040652	ENSSSAG00000110375	ENSSSAG00000103431	ENSSSAG00000108728	ENSSSAG00000040570	ENSSSAG00000040424	ENSSSAG00000085116	ENSSSAG00000065547	ENSSSAG00000039652	SMIM29 (ENSSSAG00000093782)	nudt3 (ENSSSAG00000039586)	RPS10 (ENSSSAG00000039526)	pacsin1 (ENSSSAG00000079319) ##22	spdef (ENSSSAG00000079307)	ILRUN (ENSSSAG00000039345)	BLTP3A (ENSSSAG00000079287)	taf11 (ENSSSAG00000079281)	ANKS1A (ENSSSAG00000078820)	ENSSSAG00000078770	ENSSSAG00000078571 ##16	ENSSSAG00000078540	pfkfb2a (ENSSSAG00000078211)	ENSSSAG00000078181	ENSSSAG00000078176	rprd1b (ENSSSAG00000078168)	ENSSSAG00000083463	ENSSSAG00000089514	ctbl1 (ENSSSAG00000078103)
River trout	MODERN SPECIES	20	eif4e3 (ENSSTUG00000033133)	ENSSTUG00000033155	ppp4r2a (ENSSTUG00000033167)	guca1b (ENSSTUG00000033201)	oard1 (ENSSTUG00000033221)	SYT2 (ENSSTUG00000033226)	ENSSTUG00000033247	ENSSTUG00000033255	ENSSTUG00000033272	GRM4 (ENSSTUG00000033384)	ENSSTUG00000033448	ENSSTUG00000033452	ENSSTUG00000033459	nudt3a (ENSSTUG00000033477)	rps10 (ENSSTUG00000033496)	pacsin1a (ENSSTUG00000033632) ##22	SPDEF (ENSSTUG00000033816)	ilrun (ENSSTUG00000033830)	SNRPC (ENSSTUG00000033844)	BLTP3A (ENSSTUG00000033863)	taf11 (ENSSTUG00000034012)	ANKS1A (ENSSTUG00000034057)	ENSSTUG00000035194	scube3 (ENSSTUG00000035254) ##16	ENSSTUG00000037260	pfkfb2a (ENSSTUG00000037287)	DLGAP4 (ENSSTUG00000038198)	ENSSTUG00000038241	ENSSTUG00000038264	rprd1b (ENSSTUG00000038270)	VSTM2L (ENSSTUG00000038443)
Oncorhynchus	ANCESTRAL SPECIES	20	ENSGT00940000165920.a.a.b	ENSGT00940000155865.c.a.c	ENSGT00940000162859.p.e	ENSGT00940000157530.a.h	ENSGT00390000006988.fb	ENSGT00940000157586.f.d	ENSGT00940000166065.b.d	ENSGT00390000013981.a.b	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a.c	ENSGT00940000177729.b	ENSGT00410000025882.b.d	ENSGT00940000157392.p	ENSGT00940000157882.j.a	ENSGT00440000034918.h	ENSGT00950000182973.a.c.a.d.c ##22	ENSGT00940000157549.b.a	ENSGT00490000043415.k.a.b	ENSGT00730000110997.i.a	ENSGT00600000084428.a.i	ENSGT00390000013228	ENSGT00940000155806.c.a.d	ENSGT00390000017874.b.b	ENSGT00940000153185.a.a.b.h ##16	ENSGT00940000154967.a.a.a.b	ENSGT00950000182835.d.a.k.b.j	ENSGT00940000155308.c.`b	ENSGT00940000165533.d.a	ENSGT00940000162507.B	ENSGT00950000183094.b.a.l	ENSGT00940000159381.c.b
Oncorhynchus_a	ANCESTRAL SPECIES	7	ENSGT00940000165920.a.a.b	ENSGT00940000155865.c.a.c	ENSGT00940000162859.p.e	ENSGT00390000006988.fb	ENSGT00940000157586.f.d	ENSGT00940000166065.b.d	ENSGT00390000013981.a.b	ENSGT00940000160123.e.a	ENSGT01030000234648.a.b.a.a.a.f.a.c	ENSGT00940000177729.b	ENSGT00410000025882.b.d	ENSGT00940000157983.ab.a.b	ENSGT00940000157882.j.a	ENSGT00440000034918.g.b.a	ENSGT00440000034918.h	ENSGT00950000182973.a.c.a.d.c ##22	ENSGT00940000157549.b.a	ENSGT00490000043415.k.a.b	ENSGT00730000110997.i.a	ENSGT00600000084428.a.i	ENSGT00390000013228	ENSGT00940000155806.c.a.d	ENSGT00390000017874.b.b	ENSGT00940000153185.a.a.b.h ##16	ENSGT00940000154967.a.a.a.b	ENSGT00950000182835.d.a.k.b.j	ENSGT00940000155308.c.`b	ENSGT00940000165533.d.a	ENSGT00940000162507.B	ENSGT00950000183094.b.a.l	ENSGT00940000159381.c.b
Chinook salmon	MODERN SPECIES	7	MITF (ENSOTSG00005018913)	foxp1a (ENSOTSG00005018911)	ENSOTSG00005018909	ppp4r2a (ENSOTSG00005018903)	eif4e3 (ENSOTSG00005018901)	oard1 (ENSOTSG00005018898)	SYT2 (ENSOTSG00005018897)	ENSOTSG00005018890	ENSOTSG00005018887	ENSOTSG00005018876	GRM4 (ENSOTSG00005018874)	ENSOTSG00005018873	SMIM29 (ENSOTSG00005018872)	nudt3a (ENSOTSG00005018871)	rps10 (ENSOTSG00005018869)	pacsin1a (ENSOTSG00005018660) ##22	SPDEF (ENSOTSG00005018646)	ilrun (ENSOTSG00005018644)	SNRPC (ENSOTSG00005018642)	BLTP3A (ENSOTSG00005018638)	taf11 (ENSOTSG00005018636)	ANKS1A (ENSOTSG00005018633)	C1orf116 (ENSOTSG00005018632)	scube3 (ENSOTSG00005018628) ##16	ENSOTSG00005018624	ENSOTSG00005018525	ENSOTSG00005018497	DLGAP4 (ENSOTSG00005018496)	HDAC7 (ENSOTSG00005018441)	twist3 (ENSOTSG00005018436)	ENSOTSG00005018435
Coho salmon	MODERN SPECIES	8	ENSOKIG00005039684	ENSOKIG00005039672	EIF4E3 (ENSOKIG00005039602)	ppp4r2a (ENSOKIG00005039499)	OARD1 (ENSOKIG00005039408)	SYT2 (ENSOKIG00005039372)	ENSOKIG00005039333	ENSOKIG00005039316	ENSOKIG00005038951	GRM4 (ENSOKIG00005038876)	ENSOKIG00005038860	SMIM29 (ENSOKIG00005038848)	ENSOKIG00005038826	nudt3a (ENSOKIG00005038815)	RPS10 (ENSOKIG00005038797)	pacsin1a (ENSOKIG00005038719) ##22	SPDEF (ENSOKIG00005038702)	ILRUN (ENSOKIG00005038686)	BLTP3A (ENSOKIG00005038575)	taf11 (ENSOKIG00005038557)	ENSOKIG00005038520	ANKS1A (ENSOKIG00005037811)	C1orf116 (ENSOKIG00005037665)	scube3 (ENSOKIG00005034554) ##16	ENSOKIG00005034438	pfkfb2a (ENSOKIG00005032785)	DLGAP4 (ENSOKIG00005032626)	ENSOKIG00005032601	rprd1b (ENSOKIG00005032577)	VSTM2L (ENSOKIG00005032554)	ctnnbl1 (ENSOKIG00005032027)
Rainbow trout	MODERN SPECIES	30	ENSOMYG00000042428	ENSOMYG00000064683	ENSOMYG00000042422	ENSOMYG00000068047	ENSOMYG00000076775	ENSOMYG00000042405	ENSOMYG00000042400	ENSOMYG00000042384	ENSOMYG00000058885	ENSOMYG00000042365	ENSOMYG00000042354	SMIM29 (ENSOMYG00000042352)	ENSOMYG00000048124	ENSOMYG00000042340	RPS10 (ENSOMYG00000042305)	pacsin1a (ENSOMYG00000042285) ##22	SPDEF (ENSOMYG00000042277)	ILRUN (ENSOMYG00000042270)	SNRPC (ENSOMYG00000042274)	ENSOMYG00000066450	BLTP3A (ENSOMYG00000042224)	TAF11 (ENSOMYG00000042191)	ANKS1A (ENSOMYG00000042182)	ENSOMYG00000042169	ENSOMYG00000041493 ##16	ENSOMYG00000067423	pfkfb2a (ENSOMYG00000039256)	ENSOMYG00000038652	ENSOMYG00000062324	ENSOMYG00000076544	ENSOMYG00000050584
Salmoninae	ANCESTRAL SPECIES	282											ENSGT01030000234648.a.b.a.a.a.g	ENSGT00410000025882.b.c	ENSGT00940000157983.ab	ENSGT00940000157882.j.b	ENSGT00440000034918.g.b.b	ENSGT00950000182973.a.c.a.d.d ##22	ENSGT00940000157549.b.b	ENSGT00490000043415.k.a.a	ENSGT00730000110997.i.b	ENSGT00600000084428.a.j	ENSGT00940000155806.c.a.c	ENSGT00390000017874.b.a	ENSGT00940000153185.a.a.b.g ##16	ENSGT00940000154967.a.a.a.a	ENSGT00950000182835.d.a.k.b.i	ENSGT00940000155308.c.ab	ENSGT00940000165533.d.b	ENSGT01050000244866.B.c.b	ENSGT00950000183094.b.a.k	ENSGT00390000009748	ENSGT00940000159381.c.a
Salmoninae_a	ANCESTRAL SPECIES	14	ENSGT00730000111641.a	ENSGT00940000165920.a.a.a	ENSGT00940000155865.c.a.d	ENSGT00940000162859.p.f	ENSGT00940000157530.a.g	ENSGT00390000006988.gb	ENSGT00940000157586.f.c	ENSGT00940000166065.b.c	ENSGT00390000013981.a.a	ENSGT01030000234648.a.b.a.a.a.f.a.d	ENSGT00940000177729.a	ENSGT00410000025882.b.c	ENSGT00940000157983.ab	ENSGT00940000157882.j.b	ENSGT00440000034918.g.b.b	ENSGT00950000182973.a.c.a.d.d ##22	ENSGT00940000157549.b.b	ENSGT00490000043415.k.a.a	ENSGT00730000110997.i.b	ENSGT00600000084428.a.j	ENSGT00990000214154	ENSGT00940000155806.c.a.c	ENSGT00390000017874.b.a	ENSGT00940000153185.a.a.b.g ##16	ENSGT00940000154967.a.a.a.a	ENSGT00950000182835.d.a.k.b.i	ENSGT00940000155308.c.ab	ENSGT00940000165533.d.b	ENSGT01050000244866.B.c.b	ENSGT00950000183094.b.a.k	ENSGT00390000009748
Oncorhynchus	ANCESTRAL SPECIES	7	ENSGT00730000111641.a	ENSGT00940000165920.a.a.a	ENSGT00940000155865.c.a.d	ENSGT00940000162859.p.f	ENSGT00940000157530.a.g	ENSGT00390000006988.gb	ENSGT00940000157586.f.c	ENSGT00940000166065.b.c	ENSGT00390000013981.a.a	ENSGT01030000234648.a.b.a.a.a.f.a.d	ENSGT00940000177729.a	ENSGT00410000025882.b.c	ENSGT00940000157983.ab.a.a	ENSGT00940000157882.j.b	ENSGT00440000034918.g.b.b	ENSGT00950000182973.a.c.a.d.d ##22	ENSGT00940000157549.b.b	ENSGT00490000043415.k.a.a	ENSGT00730000110997.i.b	ENSGT00600000084428.a.j	ENSGT00990000214154	ENSGT00940000155806.c.a.c	ENSGT00390000017874.b.a	ENSGT00940000153185.a.a.b.g ##16	ENSGT00940000154967.a.a.a.a	ENSGT00950000182835.d.a.k.b.i	ENSGT00940000155308.c.ab	ENSGT00940000165533.d.b	ENSGT01050000244866.B.c.b	ENSGT00950000183094.b.a.k	ENSGT00390000009748
Oncorhynchus_a	ANCESTRAL SPECIES	9	ENSGT00730000111641.a	ENSGT00940000165920.a.a.a	ENSGT00940000155865.c.a.d	ENSGT00940000162859.p.f	ENSGT00940000157530.a.g	ENSGT00390000006988.gb	ENSGT00940000157586.f.c	ENSGT00940000166065.b.c	ENSGT00390000013981.a.a	ENSGT01030000234648.a.b.a.a.a.f.a.d	ENSGT00940000177729.a	ENSGT00410000025882.b.c	ENSGT00940000157983.ab.a.a	ENSGT00940000157882.j.b	ENSGT00440000034918.g.b.b	ENSGT00950000182973.a.c.a.d.d ##22	ENSGT00940000157549.b.b	ENSGT00490000043415.k.a.a	ENSGT00730000110997.i.b	ENSGT00600000084428.a.j	ENSGT00990000214154	ENSGT00940000155806.c.a.c	ENSGT00390000017874.b.a	ENSGT00940000153185.a.a.b.g ##16	ENSGT00940000154967.a.a.a.a	ENSGT00950000182835.d.a.k.b.i	ENSGT00940000155308.c.ab	ENSGT00940000165533.d.b	ENSGT01050000244866.B.c.b	ENSGT00950000183094.b.a.k	ENSGT00390000009748
Chinook salmon	MODERN SPECIES	14	ENSOTSG00005042349	foxp1a (ENSOTSG00005042350)	eif4e3 (ENSOTSG00005042351)	ppp4r2a (ENSOTSG00005042352)	guca1b (ENSOTSG00005042353)	oard1 (ENSOTSG00005042358)	SYT2 (ENSOTSG00005042359)	ENSOTSG00005042360	ENSOTSG00005042361	GRM4 (ENSOTSG00005042362)	ENSOTSG00005042364	ENSOTSG00005042365	ENSOTSG00005042366	ENSOTSG00005042367	rps10 (ENSOTSG00005042368)	pacsin1a (ENSOTSG00005042378) ##22	SPDEF (ENSOTSG00005042385)	ilrun (ENSOTSG00005002613)	SNRPC (ENSOTSG00005002615)	BLTP3A (ENSOTSG00005002621)	ENSOTSG00005002626	ANKS1A (ENSOTSG00005002646)	ENSOTSG00005004681	scube3 (ENSOTSG00005004686) ##16	ENSOTSG00005004689	pfkfb2a (ENSOTSG00005004731)	ENSOTSG00005008017	DLGAP4 (ENSOTSG00005008018)	ENSOTSG00005008019	ENSOTSG00005008023	TTI1 (ENSOTSG00005008033)
Coho salmon	MODERN SPECIES	16	MITF (ENSOKIG00005046858)	MDFIC2 (ENSOKIG00005047135)	foxp1a (ENSOKIG00005047142)	EIF4E3 (ENSOKIG00005047152)	ppp4r2a (ENSOKIG00005047161)	guca1b (ENSOKIG00005047180)	SYT2 (ENSOKIG00005047233)	ENSOKIG00005047271	ENSOKIG00005047284	GRM4 (ENSOKIG00005047297)	ENSOKIG00005047312	ENSOKIG00005047320	ENSOKIG00005047323	ENSOKIG00005047331	ENSOKIG00005047337	pacsin1a (ENSOKIG00005047396) ##22	SPDEF (ENSOKIG00005047452)	ILRUN (ENSOKIG00005047463)	SNRPC (ENSOKIG00005047480)	BLTP3A (ENSOKIG00005047496)	ENSOKIG00005047506	ANKS1A (ENSOKIG00005013688)	ENSOKIG00005013807	ENSOKIG00005013814	SCUBE3 (ENSOKIG00005013852) ##16	ENSOKIG00005014039	pfkfb2a (ENSOKIG00005014088)	DLGAP4 (ENSOKIG00005014253)	ENSOKIG00005014262	tgm2a (ENSOKIG00005014316)	rprd1b (ENSOKIG00005015687)
Rainbow trout	MODERN SPECIES	7	ENSOMYG00000058567	foxp1a (ENSOMYG00000033705)	ENSOMYG00000033738	ppp4r2a (ENSOMYG00000033725)	ENSOMYG00000033756	ENSOMYG00000033774	ENSOMYG00000033784	ENSOMYG00000033803	ENSOMYG00000033831	ENSOMYG00000033863	ENSOMYG00000033908	ENSOMYG00000033921	socs2b (ENSOMYG00000051998)	ENSOMYG00000059109	ENSOMYG00000034103	PACSIN1 (ENSOMYG00000033949) ##22	SPDEF (ENSOMYG00000034131)	ILRUN (ENSOMYG00000034144)	ru1c (ENSOMYG00000034165)	BLTP3A (ENSOMYG00000034194)	ENSOMYG00000053241	ANKS1A (ENSOMYG00000034233)	Onmy-LAA (ENSOMYG00000034309)	ENSOMYG00000064556	ENSOMYG00000034314	ENSOMYG00000034670 ##16	ENSOMYG00000050842	TRC1 (ENSOMYG00000072410)	pfkfb2a (ENSOMYG00000036814)	ENSOMYG00000037026	ENSOMYG00000050087
Salmo	ANCESTRAL SPECIES	4	ENSGT00730000111641.a	ENSGT00940000165920.a.a.a	ENSGT00940000155865.c.a.d	ENSGT00940000162859.p.f	ENSGT00940000157530.a.g	ENSGT00390000006988.gb	ENSGT00940000157586.f.c	ENSGT00940000166065.b.c	ENSGT00390000013981.a.a	ENSGT01030000234648.a.b.a.a.a.f.a.d	ENSGT00940000177729.a	ENSGT00410000025882.b.c	ENSGT00940000157983.ab	ENSGT00940000157882.j.b	ENSGT00440000034918.g.b.b	ENSGT00950000182973.a.c.a.d.d ##22	ENSGT00940000157549.b.b	ENSGT00490000043415.k.a.a	ENSGT00730000110997.i.b	ENSGT00600000084428.a.j	ENSGT00990000214154	ENSGT00940000155806.c.a.c	ENSGT00390000017874.b.a	ENSGT00940000153185.a.a.b.g ##16	ENSGT00940000154967.a.a.a.a	ENSGT00950000182835.d.a.k.b.i	ENSGT00940000155308.c.ab	ENSGT00940000165533.d.b	ENSGT01050000244866.B.c.b	ENSGT00950000183094.b.a.k	ENSGT00390000009748
River trout	MODERN SPECIES	23	MDFIC2 (ENSSTUG00000038012)	foxp1a (ENSSTUG00000038017)	eif4e3 (ENSSTUG00000038040)	ppp4r2a (ENSSTUG00000038058)	guca1b (ENSSTUG00000038083)	oard1 (ENSSTUG00000038101)	SYT2 (ENSSTUG00000038114)	ENSSTUG00000038124	ENSSTUG00000038140	GRM4 (ENSSTUG00000038163)	ENSSTUG00000038228	ENSSTUG00000038244	ENSSTUG00000038267	ENSSTUG00000038281	rps10 (ENSSTUG00000038295)	pacsin1a (ENSSTUG00000038362) ##22	SPDEF (ENSSTUG00000038529)	ilrun (ENSSTUG00000038535)	SNRPC (ENSSTUG00000038548)	BLTP3A (ENSSTUG00000038562)	ENSSTUG00000038655	ANKS1A (ENSSTUG00000038714)	C1orf116 (ENSSTUG00000042430)	scube3 (ENSSTUG00000042616) ##16	ENSSTUG00000045450	pfkfb2a (ENSSTUG00000045462)	DLGAP4 (ENSSTUG00000045663)	ENSSTUG00000045667	tgm2a (ENSSTUG00000045720)	rprd1b (ENSSTUG00000046941)	TTI1 (ENSSTUG00000046945)
Atlantic salmon	MODERN SPECIES	4	mitf (ENSSSAG00000064604)	MDFIC2 (ENSSSAG00000111369)	ENSSSAG00000065486	ENSSSAG00000065498	ENSSSAG00000065502	ENSSSAG00000065505	ENSSSAG00000089458	ENSSSAG00000091810	ENSSSAG00000065542	ENSSSAG00000004685	ENSSSAG00000065560	SMIM29 (ENSSSAG00000065565)	ENSSSAG00000103559	nudt3a (ENSSSAG00000115927)	RPS10 (ENSSSAG00000065595)	pacsin1a (ENSSSAG00000074166) ##22	SPDEF (ENSSSAG00000039330)	SNRPC (ENSSSAG00000039409)	ILRUN (ENSSSAG00000079304)	BLTP3A (ENSSSAG00000039489)	ENSSSAG00000040103	ENSSSAG00000040333	ENSSSAG00000041866	ENSSSAG00000041951 ##16	ENSSSAG00000048868	pfkfb2a (ENSSSAG00000049094)	ENSSSAG00000062193	ENSSSAG00000091983	rprd1b (ENSSSAG00000064329)	tgm2a (ENSSSAG00000062445)	TTI1 (ENSSSAG00000064338)
Huchen	MODERN SPECIES	39											ENSHHUG00000025572	ENSHHUG00000025566	ENSHHUG00000025561	nudt3a (ENSHHUG00000025548)	rps10 (ENSHHUG00000025460)	pacsin1a (ENSHHUG00000025448) ##22	SPDEF (ENSHHUG00000025441)	ilrun (ENSHHUG00000025433)	SNRPC (ENSHHUG00000025421)	BLTP3A (ENSHHUG00000025391)	ANKS1A (ENSHHUG00000025208)	ENSHHUG00000025199	C1orf116 (ENSHHUG00000025195)	ENSHHUG00000025188	scube3 (ENSHHUG00000025002) ##16	ENSHHUG00000024994	pfkfb2a (ENSHHUG00000024798)	ENSHHUG00000024773	ENSHHUG00000024777	ENSHHUG00000024761	ENSHHUG00000024755
Northern pike	MODERN SPECIES	11	FRMD4B (ENSELUG00000019897)	MITF (ENSELUG00000019860)	ENSELUG00000019786	eif4e3 (ENSELUG00000019727)	ppp4r2a (ENSELUG00000019694)	guca1b (ENSELUG00000019659)	oard1 (ENSELUG00000019637)	SYT2 (ENSELUG00000019591)	ENSELUG00000019559	ENSELUG00000019546	ENSELUG00000019514	GRM4 (ENSELUG00000019340)	hmga1a (ENSELUG00000019318)	ENSELUG00000019304	nudt3a (ENSELUG00000019268)	pacsin1a (ENSELUG00000019245) ##22	SPDEF (ENSELUG00000019175)	ILRUN (ENSELUG00000029115)	SNRPC (ENSELUG00000000815)	BLTP3A (ENSELUG00000001377)	taf11 (ENSELUG00000019055)	ANKS1A (ENSELUG00000019007)	ENSELUG00000018775	scube3 (ENSELUG00000018752) ##16	ENSELUG00000018702	pfkfb2a (ENSELUG00000018645)	DLGAP4 (ENSELUG00000018599)	ENSELUG00000032529	ENSELUG00000018569	rprd1b (ENSELUG00000018527)	TTI1 (ENSELUG00000018503)
Spotted gar	MODERN SPECIES	669	PKP1 (ENSLOCG00000009825)	ENSLOCG00000009840	ENSLOCG00000009848	ENSLOCG00000009857	ENSLOCG00000009867	ENSLOCG00000009878	ENSLOCG00000009888	ENSLOCG00000009895	ENSLOCG00000009899	GRM4 (ENSLOCG00000009910)	hmga1a (ENSLOCG00000009932)	SMIM29 (ENSLOCG00000009940)	ENSLOCG00000009945	nudt3a (ENSLOCG00000009949)	rps10 (ENSLOCG00000009959)	pacsin1a (ENSLOCG00000009969) ##22	SPDEF (ENSLOCG00000009979)	ilrun (ENSLOCG00000009988)	ENSLOCG00000009999	BLTP3A (ENSLOCG00000010005)	taf11 (ENSLOCG00000010021)	ANKS1A (ENSLOCG00000010031)	TCP11X2 (ENSLOCG00000010042)	scube3 (ENSLOCG00000010047) ##16	rnpep (ENSLOCG00000010074)	timm17a (ENSLOCG00000010082)	LMOD1 (ENSLOCG00000010089)	shisa4 (ENSLOCG00000010094)	ipo9 (ENSLOCG00000010108)	kdm5ba (ENSLOCG00000010123)	tuba5 (ENSLOCG00000010138)
Reedfish	MODERN SPECIES	11	TNNI1 (ENSECRG00000002839)	ENSECRG00000002873	PKP1 (ENSECRG00000002897)	ENSECRG00000002925	ENSECRG00000002941	ENSECRG00000002950	ENSECRG00000002973	ENSECRG00000003001	ENSECRG00000003034	ENSECRG00000003114	hmga1a (ENSECRG00000003125)	ENSECRG00000003138	ENSECRG00000003153	nudt3a (ENSECRG00000003163)	rps10 (ENSECRG00000003169)	pacsin1a (ENSECRG00000003188) ##22	SPDEF (ENSECRG00000003212)	ilrun (ENSECRG00000003230)	snrpc (ENSECRG00000003247)	ENSECRG00000003258	ENSECRG00000003278	taf11 (ENSECRG00000003290)	ANKS1A (ENSECRG00000003332)	ENSECRG00000003394	ENSECRG00000003404	scube3 (ENSECRG00000003455) ##16	ZNF76 (ENSECRG00000003561)	ENSECRG00000003572	mical1 (ENSECRG00000003592)	rpl10a (ENSECRG00000003619)	fance (ENSECRG00000003630)
Elephant shark	MODERN SPECIES	1518	stk38a (ENSCMIG00000000363)	KCTD20 (ENSCMIG00000000316)	srsf3 (ENSCMIG00000000280)	ENSCMIG00000000260	naxe (ENSCMIG00000000251)	adora1b (ENSCMIG00000000245)	myog (ENSCMIG00000000235)	ppfia4 (ENSCMIG00000017690)	tmem183a (ENSCMIG00000017564)	ENSCMIG00000017562	oard1 (ENSCMIG00000017558)	apobec2b (ENSCMIG00000017554)	BAK1 (ENSCMIG00000017551)	ENSCMIG00000017548 #21	rps10 (ENSCMIG00000017547)	pacsin1b (ENSCMIG00000017543) ##22	SPDEF (ENSCMIG00000017538)	ilrun (ENSCMIG00000017534)	BLTP3A (ENSCMIG00000017530)	taf11 (ENSCMIG00000017523)	ANKS1A (ENSCMIG00000017510)	TCP11X2 (ENSCMIG00000017496)	scube3 (ENSCMIG00000017453) ##16	ENSCMIG00000017411	ENSCMIG00000017410	ENSCMIG00000017408	def6a (ENSCMIG00000017397)	ppardb (ENSCMIG00000017376)	ENSCMIG00000017369	ENSCMIG00000017362	ENSCMIG00000017267 #25
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00950000182973.a.d ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00950000182973.a.d ##22
Sarcopterygii	ANCESTRAL SPECIES																	ENSGT00950000182973.a.d ##22
Tetrapoda	ANCESTRAL SPECIES																	ENSGT00950000182973.a.d ##22
Amniota	ANCESTRAL SPECIES																	ENSGT00950000182973.a.d ##22
Mammalia	ANCESTRAL SPECIES																	ENSGT00950000182973.a.d ##22
Theria	ANCESTRAL SPECIES																	ENSGT00950000182973.a.d ##22
Marsupialia	ANCESTRAL SPECIES																	ENSGT00950000182973.a.d ##22
Opossum	MODERN SPECIES	1	ZBTB9 (ENSMODG00000014092)	BAK1 (ENSMODG00000014089)	ENSMODG00000014083	ITPR3 (ENSMODG00000014069)	UQCC2 (ENSMODG00000013996)	IP6K3 (ENSMODG00000013993)	ENSMODG00000013987	ENSMODG00000048209	ENSMODG00000013983	ENSMODG00000027450	GRM4 (ENSMODG00000013970)	ENSMODG00000013940	SMIM29 (ENSMODG00000013938)	NUDT3 (ENSMODG00000048086)	RPS10 (ENSMODG00000013929)	ENSMODG00000049383 ##22	SPDEF (ENSMODG00000013916)	ILRUN (ENSMODG00000013910)	ENSMODG00000013904	BLTP3A (ENSMODG00000013895)	TAF11 (ENSMODG00000051190)	ANKS1A (ENSMODG00000013855)	ENSMODG00000013839	ENSMODG00000027808	SCUBE3 (ENSMODG00000013831) ##16	ZNF76 (ENSMODG00000013806)	DEF6 (ENSMODG00000013789)	PPARD (ENSMODG00000013778)	ENSMODG00000050582	ENSMODG00000013771	ENSMODG00000013766
Cyclostomata	DUPLICATION
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00950000182973.a.a #22
Lamprey	DUPLICATION
Lamprey	MODERN SPECIES	632														ENSPMAG00000000575	ENSPMAG00000000578	ENSPMAG00000000580 #22	slc25a55b (ENSPMAG00000000583)	ENSPMAG00000000598	rfc4 (ENSPMAG00000000599)	snrpc (ENSPMAG00000000602)	uhrf1bp1l (ENSPMAG00000000608)	ENSPMAG00000000615	TH (ENSPMAG00000000617)	ENSPMAG00000000619	ENSPMAG00000000628	ENSPMAG00000000634	ENSPMAG00000000638
Lamprey	MODERN SPECIES	881														ENSPMAG00000010353	ENSPMAG00000007227	ENSPMAG00000007232 #22	ENSPMAG00000007238	ENSPMAG00000007249	ENSPMAG00000007251
Hagfish	MODERN SPECIES	87					ENSEBUG00000011533	chpt1 (ENSEBUG00000001781)	ENSEBUG00000014682	pold1 (ENSEBUG00000007380)	ENSEBUG00000001016	ENSEBUG00000009566	arl1 (ENSEBUG00000005739)	ENSEBUG00000006687	ENSEBUG00000002945	pwp1 (ENSEBUG00000009426)	ENSEBUG00000002501	ENSEBUG00000007401 #22	ENSEBUG00000010941	ENSEBUG00000000849	ENSEBUG00000003765	ENSEBUG00000010236	ENSEBUG00000008376	ENSEBUG00000008603	psmc2 (ENSEBUG00000014085)	ENSEBUG00000010998	polr2h (ENSEBUG00000008233)	ENSEBUG00000013340	ENSEBUG00000002194
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00950000182973.a.b #22
Hagfish	MODERN SPECIES	1023	pan3 (ENSEBUG00000012218)	ENSEBUG00000007360	ENSEBUG00000015805	lnx2a (ENSEBUG00000001535)	ENSEBUG00000007706	ENSEBUG00000007835	ENSEBUG00000003368	ENSEBUG00000011644 #23	ENSEBUG00000013720	ENSEBUG00000011270	rps16 (ENSEBUG00000006941)	ENSEBUG00000001242	ENSEBUG00000014734	ENSEBUG00000009450	ENSEBUG00000012444	ENSEBUG00000007022 #22	ENSEBUG00000005223	ENSEBUG00000004769	AP2A2 (ENSEBUG00000003517)	ENSEBUG00000014657	ENSEBUG00000016037	ENSEBUG00000002445	ENSEBUG00000005816	ENSEBUG00000009491	ENSEBUG00000012737
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000182973.b ##22
Gnathostomata	DUPLICATION
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00950000182973.b.a ##22
Euteleostomi	ANCESTRAL SPECIES	652														ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00940000165402
Sarcopterygii	ANCESTRAL SPECIES	381									ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00940000165402
Tetrapoda	ANCESTRAL SPECIES	9	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT00940000161022	ENSGT00940000160668	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00940000165402	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000164059	ENSGT00930000151062	ENSGT00940000160630	ENSGT01030000234629.E.b	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152
Amniota	ANCESTRAL SPECIES	20	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00390000015299.a.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000164059	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848
Sauria	ANCESTRAL SPECIES	3	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00390000015299.a.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT01030000235152.a	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757.g	ENSGT00940000164059	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152
Archelosauria	ANCESTRAL SPECIES	2	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00390000015299.a.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000161474.b.b	ENSGT01030000235152.a	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757.g	ENSGT00940000164059	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b
Archosauria	ANCESTRAL SPECIES	5	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00390000015299.a.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000161474.b.b	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757.g	ENSGT00940000164059	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152
Aves	ANCESTRAL SPECIES	2	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00390000015299.a.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757.g	ENSGT00940000164059	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848
Neognathae	ANCESTRAL SPECIES	4	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00390000015299.a.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757.g	ENSGT00940000164059	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848
Galloanserae	ANCESTRAL SPECIES	4	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00390000015299.a.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757.g	ENSGT00940000164059	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848
Anatidae	ANCESTRAL SPECIES	26															ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757.g	ENSGT00940000164059	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848
Pink-footed goose	MODERN SPECIES	44	PTDSS2 (ENSABRG00000009975)	ANO9 (ENSABRG00000009990)	SIGIRR (ENSABRG00000010038)	PKP3 (ENSABRG00000010049)	B4GALNT4 (ENSABRG00000010077)	ENSABRG00000010112	ENSABRG00000010129	IFITM5 (ENSABRG00000010133)	PGGHG (ENSABRG00000010191)	ENSABRG00000010570	PSMD13 (ENSABRG00000010627)	SIRT3 (ENSABRG00000011173)	RIC8A (ENSABRG00000011180)	BET1L (ENSABRG00000011228)	DDB2 (ENSABRG00000011250)	PACSIN3 (ENSABRG00000011272) ##22	ARFGAP2 (ENSABRG00000011294)	CSTPP1 (ENSABRG00000011314)	LRP4 (ENSABRG00000011397)	CKAP5 (ENSABRG00000012270)	ENSABRG00000014826	ZNF408 (ENSABRG00000014838)	ARHGAP1 (ENSABRG00000014848)	ATG13 (ENSABRG00000015023)	HARBI1 (ENSABRG00000015289)	AMBRA1 (ENSABRG00000015319)	CHRM4 (ENSABRG00000015532)	ENSABRG00000015542	DGKZ (ENSABRG00000015580)	CREB3L1 (ENSABRG00000015657)	PHF21A (ENSABRG00000015666)
Duck	MODERN SPECIES	23	DISP2 (ENSAPLG00000002430)	ENSAPLG00000002551	PLCB2 (ENSAPLG00000002574)	PAK6 (ENSAPLG00000003937)	BUB1B (ENSAPLG00000004271)	DRD4 (ENSAPLG00000011878)	DEAF1 (ENSAPLG00000011215)	TMEM80 (ENSAPLG00000031153)	EPS8L2 (ENSAPLG00000017050)	ENSAPLG00000021646	TALDO1 (ENSAPLG00000010471)	GATD1 (ENSAPLG00000010378)	ENSAPLG00000001178	ENSAPLG00000010090	DDB2 (ENSAPLG00000007909)	PACSIN3 (ENSAPLG00000007958) ##22	ARFGAP2 (ENSAPLG00000008452)	CSTPP1 (ENSAPLG00000009411)	ENSAPLG00000028080	LRP4 (ENSAPLG00000009787)	CKAP5 (ENSAPLG00000011076)	ENSAPLG00000013716	ENSAPLG00000025197	ARHGAP1 (ENSAPLG00000014489)	ATG13 (ENSAPLG00000015034)	HARBI1 (ENSAPLG00000015636)	AMBRA1 (ENSAPLG00000015643)	CHRM4 (ENSAPLG00000001514)	MDK (ENSAPLG00000015677)	DGKZ (ENSAPLG00000015859)	ENSAPLG00000020029
Phasianidae	ANCESTRAL SPECIES	4	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00390000015299.a.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757.g	ENSGT00940000164059	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Japanese quail	MODERN SPECIES	23	NDUFS3 (ENSCJPG00005010838)	KBTBD4 (ENSCJPG00005010839)	PTPMT1 (ENSCJPG00005010840)	CELF1 (ENSCJPG00005010841)	RAPSN (ENSCJPG00005010842)	PSMC3 (ENSCJPG00005010843)	ENSCJPG00005010844	SLC39A13 (ENSCJPG00005010845)	SPI1 (ENSCJPG00005010846)	MYBPC3 (ENSCJPG00005010847)	ENSCJPG00005011665	ENSCJPG00005011707	NR1H3 (ENSCJPG00005012023)	ACP2 (ENSCJPG00005012024)	DDB2 (ENSCJPG00005012054)	PACSIN3 (ENSCJPG00005012055) ##22	ARFGAP2 (ENSCJPG00005012077)	CSTPP1 (ENSCJPG00005012079)	ENSCJPG00005012080	LRP4 (ENSCJPG00005012083)	CKAP5 (ENSCJPG00005012374)	ENSCJPG00005013566	ARHGAP1 (ENSCJPG00005013573)	ATG13 (ENSCJPG00005013688)	HARBI1 (ENSCJPG00005013781)	AMBRA1 (ENSCJPG00005013782)	CHRM4 (ENSCJPG00005013889)	MDK (ENSCJPG00005013890)	DGKZ (ENSCJPG00005013891)	CREB3L1 (ENSCJPG00005013892)	PHF21A (ENSCJPG00005013893)
Phasianidae_b	ANCESTRAL SPECIES	3	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00390000015299.a.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757.g	ENSGT00940000164059	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124	ENSGT00940000158758
Turkey	MODERN SPECIES	25	ENSMGAG00000011016	ENSMGAG00000017332	ENSMGAG00000015803	MDK (ENSMGAG00000011008)	ENSMGAG00000010997	ENSMGAG00000010995	ENSMGAG00000010974	ENSMGAG00000010945	ENSMGAG00000020851	ENSMGAG00000010924	ENSMGAG00000010880	ENSMGAG00000010850	ENSMGAG00000022957	ENSMGAG00000019564	ENSMGAG00000010807	ENSMGAG00000010789 ##22	ENSMGAG00000010776	ENSMGAG00000010763	NR1H3 (ENSMGAG00000010751)	ENSMGAG00000021766	ENSMGAG00000017760	ENSMGAG00000010695	ENSMGAG00000010682	ENSMGAG00000010673	ENSMGAG00000010651	ENSMGAG00000010671	ENSMGAG00000010605	ENSMGAG00000021247	ENSMGAG00000010629	KBTBD4 (ENSMGAG00000010626)	ENSMGAG00000010627
Chicken	MODERN SPECIES	34	FAM180B (ENSGALG00010021988)	KBTBD4 (ENSGALG00010022032)	NDUFS3 (ENSGALG00010023836)	PTPMT1 (ENSGALG00010022073)	CELF1 (ENSGALG00010022161)	RAPSN (ENSGALG00010022229)	PSMC3 (ENSGALG00010022256)	ENSGALG00010022328	SLC39A13 (ENSGALG00010022353)	SPI1 (ENSGALG00010022386)	MYBPC3 (ENSGALG00010022468)	MADD (ENSGALG00010022619)	NR1H3 (ENSGALG00010022650)	ACP2 (ENSGALG00010022727)	DDB2 (ENSGALG00010022792)	PACSIN3 (ENSGALG00010022819) ##22	ARFGAP2 (ENSGALG00010022838)	CSTPP1 (ENSGALG00010022864)	LRP4 (ENSGALG00010022929)	CKAP5 (ENSGALG00010022971)	F2 (ENSGALG00010022987)	ARHGAP1 (ENSGALG00010022997)	ATG13 (ENSGALG00010023064)	HARBI1 (ENSGALG00010023083)	AMBRA1 (ENSGALG00010023866)	CHRM4 (ENSGALG00010023120)	MDK (ENSGALG00010023136)	DGKZ (ENSGALG00010023196)	CREB3L1 (ENSGALG00010023217)	PHF21A (ENSGALG00010021790)	LARGE2 (ENSGALG00010021848)
Neognathae_b	ANCESTRAL SPECIES	6	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00390000015299.a.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757.g	ENSGT00940000164059	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848
Passeriformes	ANCESTRAL SPECIES	5	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00390000015299.a.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757.g	ENSGT00940000164059	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Passeriformes_d	ANCESTRAL SPECIES	5	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00390000015299.a.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757.g	ENSGT00940000164059	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Flycatcher	MODERN SPECIES	24	KBTBD4 (ENSFALG00000006408)	NDUFS3 (ENSFALG00000006411)	PTPMT1 (ENSFALG00000006406)	CELF1 (ENSFALG00000006402)	RAPSN (ENSFALG00000006401)	PSMC3 (ENSFALG00000006396)	ENSFALG00000028830	SLC39A13 (ENSFALG00000006394)	SPI1 (ENSFALG00000024717)	MYBPC3 (ENSFALG00000006369)	ENSFALG00000006333	ENSFALG00000026717	NR1H3 (ENSFALG00000006313)	ACP2 (ENSFALG00000026896)	DDB2 (ENSFALG00000025215)	PACSIN3 (ENSFALG00000006296) ##22	ARFGAP2 (ENSFALG00000006292)	CSTPP1 (ENSFALG00000024272)	ENSFALG00000025106	LRP4 (ENSFALG00000006286)	CKAP5 (ENSFALG00000006282)	ENSFALG00000006272	ARHGAP1 (ENSFALG00000006265)	ATG13 (ENSFALG00000006261)	HARBI1 (ENSFALG00000028036)	AMBRA1 (ENSFALG00000006252)	CHRM4 (ENSFALG00000014204)	MDK (ENSFALG00000006248)	DGKZ (ENSFALG00000006244)	CREB3L1 (ENSFALG00000006242)	PHF21A (ENSFALG00000006238)
Passeriformes_g	ANCESTRAL SPECIES		ENSGT00940000171188	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00390000015299.a.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757.g	ENSGT00940000164059	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124	ENSGT00940000158758
Passeroidea	ANCESTRAL SPECIES	1	ENSGT00940000171188	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00390000015299.a.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757.g	ENSGT00940000164059	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124	ENSGT00940000158758
Common canary	MODERN SPECIES	3	ENSSCAG00000003433	NDUFS3 (ENSSCAG00000003420)	KBTBD4 (ENSSCAG00000003415)	PTPMT1 (ENSSCAG00000003409)	CELF1 (ENSSCAG00000003397)	RAPSN (ENSSCAG00000003388)	PSMC3 (ENSSCAG00000003373)	ENSSCAG00000003365	SLC39A13 (ENSSCAG00000003352)	SPI1 (ENSSCAG00000003345)	MYBPC3 (ENSSCAG00000003326)	MADD (ENSSCAG00000003307)	NR1H3 (ENSSCAG00000003301)	ACP2 (ENSSCAG00000003297)	DDB2 (ENSSCAG00000003292)	PACSIN3 (ENSSCAG00000003283) ##22	ARFGAP2 (ENSSCAG00000003185)	CSTPP1 (ENSSCAG00000003159)	LRP4 (ENSSCAG00000003129)	CKAP5 (ENSSCAG00000003039)	ENSSCAG00000003007	ARHGAP1 (ENSSCAG00000002990)	ATG13 (ENSSCAG00000002981)	HARBI1 (ENSSCAG00000002978)	AMBRA1 (ENSSCAG00000002743)	CHRM4 (ENSSCAG00000002686)	MDK (ENSSCAG00000002680)	DGKZ (ENSSCAG00000002643)	CREB3L1 (ENSSCAG00000002634)	PHF21A (ENSSCAG00000002624)	LARGE2 (ENSSCAG00000002619)
Zebra finch	MODERN SPECIES	27	C1QTNF4 (ENSTGUG00000010341)	ENSTGUG00000019362	NDUFS3 (ENSTGUG00000010343)	KBTBD4 (ENSTGUG00000010361)	PTPMT1 (ENSTGUG00000010369)	CELF1 (ENSTGUG00000010377)	RAPSN (ENSTGUG00000010400)	PSMC3 (ENSTGUG00000028944)	SLC39A13 (ENSTGUG00000010418)	SPI1 (ENSTGUG00000026691)	MYBPC3 (ENSTGUG00000010426)	MADD (ENSTGUG00000010454)	NR1H3 (ENSTGUG00000010475)	ACP2 (ENSTGUG00000010486)	DDB2 (ENSTGUG00000010493)	PACSIN3 (ENSTGUG00000010497) ##22	ARFGAP2 (ENSTGUG00000010515)	CSTPP1 (ENSTGUG00000010527)	LRP4 (ENSTGUG00000010533)	CKAP5 (ENSTGUG00000023569)	ENSTGUG00000010580	ARHGAP1 (ENSTGUG00000010593)	ATG13 (ENSTGUG00000010603)	HARBI1 (ENSTGUG00000010627)	AMBRA1 (ENSTGUG00000010628)	CHRM4 (ENSTGUG00000010635)	MDK (ENSTGUG00000010641)	DGKZ (ENSTGUG00000010647)	CREB3L1 (ENSTGUG00000010669)	PHF21A (ENSTGUG00000010680)	LARGE2 (ENSTGUG00000010689)
Medium ground finch	MODERN SPECIES	15	C1QTNF4 (ENSGFOG00000006164)	ENSGFOG00000006160	NDUFS3 (ENSGFOG00000006152)	KBTBD4 (ENSGFOG00000006147)	CELF1 (ENSGFOG00000006114)	RAPSN (ENSGFOG00000006104)	PSMC3 (ENSGFOG00000006090)	ENSGFOG00000006082	SLC39A13 (ENSGFOG00000006071)	SPI1 (ENSGFOG00000006067)	MYBPC3 (ENSGFOG00000005710)	MADD (ENSGFOG00000005599)	NR1H3 (ENSGFOG00000005580)	ACP2 (ENSGFOG00000005529)	DDB2 (ENSGFOG00000005508)	PACSIN3 (ENSGFOG00000005468) ##22	ARFGAP2 (ENSGFOG00000005441)	CSTPP1 (ENSGFOG00000005426)	LRP4 (ENSGFOG00000005261)	CKAP5 (ENSGFOG00000005139)	ENSGFOG00000005094	ARHGAP1 (ENSGFOG00000005074)	ATG13 (ENSGFOG00000005043)	HARBI1 (ENSGFOG00000005030)	AMBRA1 (ENSGFOG00000005019)	CHRM4 (ENSGFOG00000005010)	MDK (ENSGFOG00000005000)	DGKZ (ENSGFOG00000000238)	CREB3L1 (ENSGFOG00000000033)	PHF21A (ENSGFOG00000002605)	LARGE2 (ENSGFOG00000002573)
Great tit	MODERN SPECIES	25	C1QTNF4 (ENSPMJG00000000868)	ENSPMJG00000000873	NDUFS3 (ENSPMJG00000000879)	KBTBD4 (ENSPMJG00000000885)	PTPMT1 (ENSPMJG00000000896)	CELF1 (ENSPMJG00000000899)	PSMC3 (ENSPMJG00000000915)	ENSPMJG00000000920	SLC39A13 (ENSPMJG00000000932)	SPI1 (ENSPMJG00000000997)	MYBPC3 (ENSPMJG00000001019)	MADD (ENSPMJG00000004069)	NR1H3 (ENSPMJG00000012279)	ACP2 (ENSPMJG00000012280)	DDB2 (ENSPMJG00000012286)	PACSIN3 (ENSPMJG00000012291) ##22	ARFGAP2 (ENSPMJG00000012299)	CSTPP1 (ENSPMJG00000012300)	ENSPMJG00000012301	LRP4 (ENSPMJG00000012302)	CKAP5 (ENSPMJG00000012334)	ENSPMJG00000013670	ARHGAP1 (ENSPMJG00000013679)	ATG13 (ENSPMJG00000013870)	HARBI1 (ENSPMJG00000013871)	AMBRA1 (ENSPMJG00000013872)	CHRM4 (ENSPMJG00000014372)	MDK (ENSPMJG00000014373)	DGKZ (ENSPMJG00000014374)	CREB3L1 (ENSPMJG00000014375)	PHF21A (ENSPMJG00000014377)
Neognathae_c	ANCESTRAL SPECIES	6	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00390000015299.a.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757.g	ENSGT00940000164059	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Golden eagle	MODERN SPECIES	11	FAM180B (ENSACCG00020004632)	NDUFS3 (ENSACCG00020004622)	KBTBD4 (ENSACCG00020004612)	PTPMT1 (ENSACCG00020004607)	CELF1 (ENSACCG00020004593)	RAPSN (ENSACCG00020004581)	PSMC3 (ENSACCG00020004570)	ENSACCG00020004563	SLC39A13 (ENSACCG00020009305)	SPI1 (ENSACCG00020009293)	MYBPC3 (ENSACCG00020009268)	MADD (ENSACCG00020009078)	NR1H3 (ENSACCG00020008972)	ACP2 (ENSACCG00020008959)	DDB2 (ENSACCG00020008939)	PACSIN3 (ENSACCG00020008914) ##22	ARFGAP2 (ENSACCG00020008855)	CSTPP1 (ENSACCG00020008796)	LRP4 (ENSACCG00020008390)	CKAP5 (ENSACCG00020007836)	ENSACCG00020007794	ZNF408 (ENSACCG00020007780)	ARHGAP1 (ENSACCG00020007772)	ATG13 (ENSACCG00020007724)	HARBI1 (ENSACCG00020007689)	AMBRA1 (ENSACCG00020007670)	CHRM4 (ENSACCG00020007659)	MDK (ENSACCG00020007651)	DGKZ (ENSACCG00020007561)	CREB3L1 (ENSACCG00020007513)	PHF21A (ENSACCG00020007479)
Kakapo	MODERN SPECIES	21	ENSSHBG00005002652	NDUFS3 (ENSSHBG00005002665)	KBTBD4 (ENSSHBG00005002689)	PTPMT1 (ENSSHBG00005002711)	CELF1 (ENSSHBG00005002788)	RAPSN (ENSSHBG00005002915)	PSMC3 (ENSSHBG00005002985)	ENSSHBG00005003006	SLC39A13 (ENSSHBG00005003021)	SPI1 (ENSSHBG00005003049)	MYBPC3 (ENSSHBG00005003084)	MADD (ENSSHBG00005003189)	NR1H3 (ENSSHBG00005003352)	ACP2 (ENSSHBG00005003371)	DDB2 (ENSSHBG00005003396)	PACSIN3 (ENSSHBG00005003435) ##22	ARFGAP2 (ENSSHBG00005003460)	CSTPP1 (ENSSHBG00005003475)	LRP4 (ENSSHBG00005003580)	CKAP5 (ENSSHBG00005003723)	ENSSHBG00005003750	ARHGAP1 (ENSSHBG00005003766)	ATG13 (ENSSHBG00005003785)	HARBI1 (ENSSHBG00005003802)	AMBRA1 (ENSSHBG00005003842)	CHRM4 (ENSSHBG00005003882)	MDK (ENSSHBG00005003898)	DGKZ (ENSSHBG00005003935)	CREB3L1 (ENSSHBG00005003978)	PHF21A (ENSSHBG00005004004)	LARGE2 (ENSSHBG00005004024)
African ostrich	MODERN SPECIES	885	C1QTNF4 (ENSSCUG00000017344)	FAM180B (ENSSCUG00000017343)	NDUFS3 (ENSSCUG00000017342)	KBTBD4 (ENSSCUG00000017340)	CELF1 (ENSSCUG00000017336)	RAPSN (ENSSCUG00000017332)	PSMC3 (ENSSCUG00000017315)	ENSSCUG00000017312	SLC39A13 (ENSSCUG00000017311)	SPI1 (ENSSCUG00000017309)	MYBPC3 (ENSSCUG00000017219)	MADD (ENSSCUG00000017005)	NR1H3 (ENSSCUG00000016935)	ACP2 (ENSSCUG00000016921)	DDB2 (ENSSCUG00000016918)	PACSIN3 (ENSSCUG00000016916) ##22	ARFGAP2 (ENSSCUG00000016901)	CSTPP1 (ENSSCUG00000016889)	LRP4 (ENSSCUG00000016879)	CKAP5 (ENSSCUG00000016863)	ENSSCUG00000016848
Australian saltwater crocodile	MODERN SPECIES	64	C1QTNF4 (ENSCPRG00005017446)	FAM180B (ENSCPRG00005017443)	NDUFS3 (ENSCPRG00005017439)	KBTBD4 (ENSCPRG00005017435)	PTPMT1 (ENSCPRG00005017408)	CELF1 (ENSCPRG00005017370)	PSMC3 (ENSCPRG00005017298)	ENSCPRG00005017284	SLC39A13 (ENSCPRG00005017281)	SPI1 (ENSCPRG00005017278)	MYBPC3 (ENSCPRG00005017258)	MADD (ENSCPRG00005015319)	NR1H3 (ENSCPRG00005014870)	ACP2 (ENSCPRG00005014864)	DDB2 (ENSCPRG00005014860)	PACSIN3 (ENSCPRG00005014853) ##22	ENSCPRG00005014850	ARFGAP2 (ENSCPRG00005014830)	CSTPP1 (ENSCPRG00005014822)	LRP4 (ENSCPRG00005014807)	CKAP5 (ENSCPRG00005014039)	ENSCPRG00005013914	ZNF408 (ENSCPRG00005013908)	ARHGAP1 (ENSCPRG00005013849)	ATG13 (ENSCPRG00005013813)	HARBI1 (ENSCPRG00005013808)	AMBRA1 (ENSCPRG00005013805)	CHRM4 (ENSCPRG00005013799)	MDK (ENSCPRG00005013793)	DGKZ (ENSCPRG00005012247)	ENSCPRG00005011946
Cryptodira	ANCESTRAL SPECIES	3	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00390000015299.a.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000161474.b.b	ENSGT01030000235152.a	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757.g	ENSGT00940000164059	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b
Testudinoidea	ANCESTRAL SPECIES	3	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00390000015299.a.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000161474.b.b	ENSGT01030000235152.a	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757.g	ENSGT00940000164059	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b
Emydidae	ANCESTRAL SPECIES	2	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00390000015299.a.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000161474.b.b	ENSGT01030000235152.a	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757.g	ENSGT00940000164059	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b
Three-toed box turtle	MODERN SPECIES	40	FAM180B (ENSTMTG00000002205)	NDUFS3 (ENSTMTG00000002201)	KBTBD4 (ENSTMTG00000002190)	PTPMT1 (ENSTMTG00000002180)	CELF1 (ENSTMTG00000002164)	RAPSN (ENSTMTG00000002125)	PSMC3 (ENSTMTG00000002110)	ENSTMTG00000002105	SLC39A13 (ENSTMTG00000002100)	SPI1 (ENSTMTG00000002089)	MYBPC3 (ENSTMTG00000002067)	MADD (ENSTMTG00000001980)	NR1H3 (ENSTMTG00000001955)	ACP2 (ENSTMTG00000001937)	DDB2 (ENSTMTG00000001919)	PACSIN3 (ENSTMTG00000001907) ##22	ENSTMTG00000001899	ENSTMTG00000001884	ARFGAP2 (ENSTMTG00000001865)	CSTPP1 (ENSTMTG00000001857)	ENSTMTG00000001848	LRP4 (ENSTMTG00000001223)	CKAP5 (ENSTMTG00000000970)	ENSTMTG00000000941	ENSTMTG00000000932	ARHGAP1 (ENSTMTG00000000921)	ATG13 (ENSTMTG00000000864)	HARBI1 (ENSTMTG00000000846)	AMBRA1 (ENSTMTG00000000819)	CHRM4 (ENSTMTG00000000807)	MDK (ENSTMTG00000000793)
painted turtle	MODERN SPECIES	13	ATP5F1D (ENSCPBG00000022922)	ENSCPBG00000022921	CBARP (ENSCPBG00000022920)	STK11 (ENSCPBG00000022919)	CELF1 (ENSCPBG00000022914)	RAPSN (ENSCPBG00000022911)	PSMC3 (ENSCPBG00000022907)	ENSCPBG00000022906	SLC39A13 (ENSCPBG00000022904)	SPI1 (ENSCPBG00000022901)	MYBPC3 (ENSCPBG00000022606)	MADD (ENSCPBG00000015642)	NR1H3 (ENSCPBG00000015508)	ACP2 (ENSCPBG00000015503)	DDB2 (ENSCPBG00000015494)	PACSIN3 (ENSCPBG00000015488) ##22	ENSCPBG00000015485	ENSCPBG00000015483	ARFGAP2 (ENSCPBG00000015479)	CSTPP1 (ENSCPBG00000015473)	LRP4 (ENSCPBG00000015397)	CKAP5 (ENSCPBG00000012821)	ENSCPBG00000012688	ZNF408 (ENSCPBG00000012683)	ARHGAP1 (ENSCPBG00000012676)	ATG13 (ENSCPBG00000012673)	HARBI1 (ENSCPBG00000012670)	AMBRA1 (ENSCPBG00000012667)	CHRM4 (ENSCPBG00000012662)	MDK (ENSCPBG00000012660)	DGKZ (ENSCPBG00000012640)
Testudinidae	ANCESTRAL SPECIES	2	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00390000015299.a.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000161474.b.b	ENSGT01030000235152.a	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757.g.c	ENSGT00940000164059	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152
Abingdon island giant tortoise	MODERN SPECIES	852										SPI1 (ENSCABG00000010435)	MYBPC3 (ENSCABG00000010433)	MADD (ENSCABG00000001771)	NR1H3 (ENSCABG00000001529)	ACP2 (ENSCABG00000001524)	DDB2 (ENSCABG00000001519)	PACSIN3 (ENSCABG00000001512) ##22	ENSCABG00000001508	ARFGAP2 (ENSCABG00000001499)	CSTPP1 (ENSCABG00000001380)
Goode s thornscrub tortoise	MODERN SPECIES	18	FAM180B (ENSGEVG00005018619)	ENSGEVG00005018637	KBTBD4 (ENSGEVG00005018662)	PTPMT1 (ENSGEVG00005018678)	CELF1 (ENSGEVG00005008981)	RAPSN (ENSGEVG00005009044)	PSMC3 (ENSGEVG00005009237)	ENSGEVG00005009277	SLC39A13 (ENSGEVG00005009349)	SPI1 (ENSGEVG00005009450)	MYBPC3 (ENSGEVG00005009503)	MADD (ENSGEVG00005009759)	NR1H3 (ENSGEVG00005009930)	ACP2 (ENSGEVG00005009970)	DDB2 (ENSGEVG00005010017)	PACSIN3 (ENSGEVG00005010100) ##22	ENSGEVG00005010139	ENSGEVG00005010166	ARFGAP2 (ENSGEVG00005010210)	CSTPP1 (ENSGEVG00005010346)	LRP4 (ENSGEVG00005010404)	CKAP5 (ENSGEVG00005010815)	ENSGEVG00005011016	ZNF408 (ENSGEVG00005011280)	ARHGAP1 (ENSGEVG00005011311)	ATG13 (ENSGEVG00005011349)	HARBI1 (ENSGEVG00005011393)	AMBRA1 (ENSGEVG00005011573)	CHRM4 (ENSGEVG00005011709)	MDK (ENSGEVG00005011735)	DGKZ (ENSGEVG00005011914)
Chinese turtle	MODERN SPECIES	2040												MADD (ENSPSIG00000011191)	NR1H3 (ENSPSIG00000010360)	ACP2 (ENSPSIG00000009418)	DDB2 (ENSPSIG00000009124)	PACSIN3 (ENSPSIG00000008397) ##22	ENSPSIG00000008989	ARFGAP2 (ENSPSIG00000008332)	CSTPP1 (ENSPSIG00000007995)	LRP4 (ENSPSIG00000017168)	ENSPSIG00000017079
Lepidosauria	ANCESTRAL SPECIES	10	ENSGT00940000171188	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00390000015299.a.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446.bb	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT01030000235152.a	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757.g	ENSGT00940000164059	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152
Episquamata	ANCESTRAL SPECIES		ENSGT00940000171188	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00390000015299.a.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446.bb	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000161474.b	ENSGT01030000235152.a	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757.g	ENSGT00940000164059	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b
Laterata	ANCESTRAL SPECIES	2	ENSGT00940000171188	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00390000015299.a.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446.bb	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT01030000235152.a	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757.g	ENSGT00940000164059	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848
Common wall lizard	MODERN SPECIES		ENSPMRG00000003859	NDUFS3 (ENSPMRG00000003864)	KBTBD4 (ENSPMRG00000003871)	PTPMT1 (ENSPMRG00000003875)	CELF1 (ENSPMRG00000003881)	PSMC3 (ENSPMRG00000003892)	ENSPMRG00000003975	ENSPMRG00000003979	SLC39A13 (ENSPMRG00000003994)	SPI1 (ENSPMRG00000004012)	MYBPC3 (ENSPMRG00000004475)	MADD (ENSPMRG00000008010)	NR1H3 (ENSPMRG00000011909)	ACP2 (ENSPMRG00000011917)	DDB2 (ENSPMRG00000011927)	PACSIN3 (ENSPMRG00000011938) ##22	ENSPMRG00000011947	ARFGAP2 (ENSPMRG00000011954)	CSTPP1 (ENSPMRG00000011967)	LRP4 (ENSPMRG00000012004)	CKAP5 (ENSPMRG00000012212)	ENSPMRG00000012267	ZNF408 (ENSPMRG00000012272)	ARHGAP1 (ENSPMRG00000012280)	ATG13 (ENSPMRG00000012377)	HARBI1 (ENSPMRG00000012436)	AMBRA1 (ENSPMRG00000012441)	CHRM4 (ENSPMRG00000012456)	MDK (ENSPMRG00000012465)	ENSPMRG00000012478	DGKZ (ENSPMRG00000012726)
Argentine black and white tegu	MODERN SPECIES	3	ENSSMRG00000006346	NDUFS3 (ENSSMRG00000006342)	KBTBD4 (ENSSMRG00000006338)	PTPMT1 (ENSSMRG00000006333)	CELF1 (ENSSMRG00000006315)	RAPSN (ENSSMRG00000006301)	PSMC3 (ENSSMRG00000006278)	ENSSMRG00000006277	SLC39A13 (ENSSMRG00000006274)	SPI1 (ENSSMRG00000006272)	MYBPC3 (ENSSMRG00000006219)	MADD (ENSSMRG00000006111)	NR1H3 (ENSSMRG00000006068)	ACP2 (ENSSMRG00000006020)	DDB2 (ENSSMRG00000006012)	PACSIN3 (ENSSMRG00000006009) ##22	ARFGAP2 (ENSSMRG00000006004)	CSTPP1 (ENSSMRG00000006000)	LRP4 (ENSSMRG00000005929)	CKAP5 (ENSSMRG00000005833)	ENSSMRG00000005831	ZNF408 (ENSSMRG00000005829)	ARHGAP1 (ENSSMRG00000005826)	ATG13 (ENSSMRG00000005818)	HARBI1 (ENSSMRG00000005723)	AMBRA1 (ENSSMRG00000005709)	CHRM4 (ENSSMRG00000005613)	MDK (ENSSMRG00000005607)	DGKZ (ENSSMRG00000005548)	CREB3L1 (ENSSMRG00000005539)	PHF21A (ENSSMRG00000005500)
Toxicofera	ANCESTRAL SPECIES	5	ENSGT00940000171188	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00390000015299.a.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446.bb	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000161474.b	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757.g	ENSGT00940000164059	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152
Elapidae	ANCESTRAL SPECIES	3	ENSGT00940000171188	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00390000015299.a.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446.bb	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757.g	ENSGT00930000151062	ENSGT00940000164059	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848
Elapidae_a	ANCESTRAL SPECIES	4	ENSGT00940000171188	ENSGT00390000017480.a	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00390000015299.a.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446.bb	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757.g	ENSGT00940000164059	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Acanthophiinae	ANCESTRAL SPECIES	6	ENSGT00940000171188	ENSGT00390000017480.a	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00390000015299.a.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446.bb	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757.g	ENSGT00940000164059	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Mainland tiger snake	MODERN SPECIES	36	ENSNSUG00000017709	NDUFS3 (ENSNSUG00000017710)	KBTBD4 (ENSNSUG00000017712)	PTPMT1 (ENSNSUG00000017713)	CELF1 (ENSNSUG00000017714)	RAPSN (ENSNSUG00000017715)	PSMC3 (ENSNSUG00000017716)	ENSNSUG00000017717	SLC39A13 (ENSNSUG00000017718)	SPI1 (ENSNSUG00000017719)	MYBPC3 (ENSNSUG00000017720)	MADD (ENSNSUG00000017721)	NR1H3 (ENSNSUG00000017722)	ACP2 (ENSNSUG00000017723)	DDB2 (ENSNSUG00000017724)	PACSIN3 (ENSNSUG00000017725) ##22	ARFGAP2 (ENSNSUG00000017726)	CSTPP1 (ENSNSUG00000017812)	ENSNSUG00000017813	LRP4 (ENSNSUG00000017814)	CKAP5 (ENSNSUG00000017815)	ENSNSUG00000017817	ARHGAP1 (ENSNSUG00000017818)	ATG13 (ENSNSUG00000017819)	HARBI1 (ENSNSUG00000017831)	AMBRA1 (ENSNSUG00000017836)	CHRM4 (ENSNSUG00000017843)	MDK (ENSNSUG00000017844)	DGKZ (ENSNSUG00000017845)	CREB3L1 (ENSNSUG00000018219)	PHF21A (ENSNSUG00000018220)
Eastern brown snake	MODERN SPECIES	1	ENSPTXG00000012047	ENSPTXG00000012045	KBTBD4 (ENSPTXG00000012043)	PTPMT1 (ENSPTXG00000012042)	CELF1 (ENSPTXG00000012038)	RAPSN (ENSPTXG00000012021)	PSMC3 (ENSPTXG00000012020)	ENSPTXG00000012019	SLC39A13 (ENSPTXG00000012018)	SPI1 (ENSPTXG00000012017)	MYBPC3 (ENSPTXG00000012012)	MADD (ENSPTXG00000011997)	NR1H3 (ENSPTXG00000011996)	ACP2 (ENSPTXG00000011995)	DDB2 (ENSPTXG00000011994)	PACSIN3 (ENSPTXG00000011992) ##22	ARFGAP2 (ENSPTXG00000011989)	CSTPP1 (ENSPTXG00000011967)	LRP4 (ENSPTXG00000011966)	CKAP5 (ENSPTXG00000011950)	ENSPTXG00000011946	ARHGAP1 (ENSPTXG00000011944)	ATG13 (ENSPTXG00000011942)	HARBI1 (ENSPTXG00000011941)	AMBRA1 (ENSPTXG00000011938)	CHRM4 (ENSPTXG00000011936)	MDK (ENSPTXG00000011934)	DGKZ (ENSPTXG00000008729)	CREB3L1 (ENSPTXG00000008716)	PHF21A (ENSPTXG00000008714)	LARGE2 (ENSPTXG00000008713)
Blue-lipped sea krait	MODERN SPECIES	7622																PACSIN3 (ENSLLTG00000005384) ##22	ARFGAP2 (ENSLLTG00000005345)	CSTPP1 (ENSLLTG00000005333)
Indian cobra	MODERN SPECIES		ENSNNAG00000007916	NDUFS3 (ENSNNAG00000007881)	KBTBD4 (ENSNNAG00000007860)	PTPMT1 (ENSNNAG00000007839)	CELF1 (ENSNNAG00000007686)	RAPSN (ENSNNAG00000007663)	PSMC3 (ENSNNAG00000007548)	ENSNNAG00000007492	SLC39A13 (ENSNNAG00000007477)	SPI1 (ENSNNAG00000007464)	MYBPC3 (ENSNNAG00000007372)	MADD (ENSNNAG00000006994)	NR1H3 (ENSNNAG00000006918)	ACP2 (ENSNNAG00000006887)	DDB2 (ENSNNAG00000006863)	PACSIN3 (ENSNNAG00000006783) ##22	ARFGAP2 (ENSNNAG00000006716)	CSTPP1 (ENSNNAG00000016196)	ENSNNAG00000016189	LRP4 (ENSNNAG00000016125)	CKAP5 (ENSNNAG00000012822)	ENSNNAG00000012596	ENSNNAG00000012433	ARHGAP1 (ENSNNAG00000012386)	ATG13 (ENSNNAG00000012104)	HARBI1 (ENSNNAG00000012072)	AMBRA1 (ENSNNAG00000011933)	CHRM4 (ENSNNAG00000011899)	MDK (ENSNNAG00000011865)	DGKZ (ENSNNAG00000011459)	CREB3L1 (ENSNNAG00000011364)
Lizard	MODERN SPECIES		PTPMT1 (ENSACAG00000002085)	CELF1 (ENSACAG00000002114)	ENSACAG00000037762	RAPSN (ENSACAG00000002242)	PSMC3 (ENSACAG00000002289)	ENSACAG00000041621	SLC39A13 (ENSACAG00000002440)	SPI1 (ENSACAG00000035887)	MYBPC3 (ENSACAG00000002510)	ENSACAG00000043000	ENSACAG00000042190	MADD (ENSACAG00000002771)	NR1H3 (ENSACAG00000002940)	ACP2 (ENSACAG00000003028)	DDB2 (ENSACAG00000003132)	PACSIN3 (ENSACAG00000003162) ##22	ENSACAG00000003234	ENSACAG00000040032	ENSACAG00000003243	CSTPP1 (ENSACAG00000003280)	LRP4 (ENSACAG00000003321)	CKAP5 (ENSACAG00000029651)	ENSACAG00000003853	ZNF408 (ENSACAG00000003860)	ARHGAP1 (ENSACAG00000003876)	ATG13 (ENSACAG00000003943)	HARBI1 (ENSACAG00000004077)	AMBRA1 (ENSACAG00000004085)	CHRM4 (ENSACAG00000004120)	MDK (ENSACAG00000041148)	ENSACAG00000041893
tuatara	MODERN SPECIES	1197		NDUFS3 (ENSSPUG00000004338)	KBTBD4 (ENSSPUG00000004313)	PTPMT1 (ENSSPUG00000004302)	CELF1 (ENSSPUG00000004228)	RAPSN (ENSSPUG00000004202)	PSMC3 (ENSSPUG00000004135)	ENSSPUG00000004090	SLC39A13 (ENSSPUG00000004075)	SPI1 (ENSSPUG00000004067)	MYBPC3 (ENSSPUG00000004024)	MADD (ENSSPUG00000003976)	NR1H3 (ENSSPUG00000003960)	ACP2 (ENSSPUG00000003932)	DDB2 (ENSSPUG00000003915)	PACSIN3 (ENSSPUG00000003902) ##22	ENSSPUG00000003889	ARFGAP2 (ENSSPUG00000003827)	CSTPP1 (ENSSPUG00000003775)	LRP4 (ENSSPUG00000003709)	CKAP5 (ENSSPUG00000003628)	ENSSPUG00000003565	ZNF408 (ENSSPUG00000003559)	ARHGAP1 (ENSSPUG00000003553)	ATG13 (ENSSPUG00000003280)	HARBI1 (ENSSPUG00000003237)	AMBRA1 (ENSSPUG00000003231)	CHRM4 (ENSSPUG00000003226)	MDK (ENSSPUG00000003220)	DGKZ (ENSSPUG00000003133)	CREB3L1 (ENSSPUG00000003053)
Mammalia	ANCESTRAL SPECIES	9	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000164059	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848
Theria	ANCESTRAL SPECIES	8	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000164059	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848
Eutheria	ANCESTRAL SPECIES	3	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848
Atlantogenata	ANCESTRAL SPECIES	13	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Afrotheria	ANCESTRAL SPECIES	16	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Afrotheria_a	ANCESTRAL SPECIES	17	ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Elephant	MODERN SPECIES	209	MTCH2 (ENSLAFG00000017949)	C1QTNF4 (ENSLAFG00000017947)	NDUFS3 (ENSLAFG00000017939)	KBTBD4 (ENSLAFG00000017937)	PTPMT1 (ENSLAFG00000020874)	CELF1 (ENSLAFG00000003484)	RAPSN (ENSLAFG00000016010)	PSMC3 (ENSLAFG00000032142)	SLC39A13 (ENSLAFG00000015999)	SPI1 (ENSLAFG00000004062)	MYBPC3 (ENSLAFG00000031033)	MADD (ENSLAFG00000009270)	NR1H3 (ENSLAFG00000009267)	ACP2 (ENSLAFG00000025658)	DDB2 (ENSLAFG00000009262)	PACSIN3 (ENSLAFG00000016193) ##22	ARFGAP2 (ENSLAFG00000013742)	CSTPP1 (ENSLAFG00000013736)	LRP4 (ENSLAFG00000013726)	CKAP5 (ENSLAFG00000010386)	F2 (ENSLAFG00000010383)	ZNF408 (ENSLAFG00000027848)	ARHGAP1 (ENSLAFG00000015141)	ATG13 (ENSLAFG00000015138)	HARBI1 (ENSLAFG00000032359)	ENSLAFG00000015123	ENSLAFG00000030479	CHRM4 (ENSLAFG00000026552)	MDK (ENSLAFG00000015119)	DGKZ (ENSLAFG00000015107)	CREB3L1 (ENSLAFG00000005092)
Hyrax	MODERN SPECIES	3657										SPI1 (ENSPCAG00000016572)	MYBPC3 (ENSPCAG00000016433)	MADD (ENSPCAG00000016258)	NR1H3 (ENSPCAG00000016194)	ACP2 (ENSPCAG00000016140)	DDB2 (ENSPCAG00000016073)	PACSIN3 (ENSPCAG00000015992) ##22	ARFGAP2 (ENSPCAG00000015888)	CSTPP1 (ENSPCAG00000015812)
Tenrec	MODERN SPECIES	5840																PACSIN3 (ENSETEG00000010143) ##22
Xenarthra	ANCESTRAL SPECIES	19	ENSGT00940000160201	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Armadillo	MODERN SPECIES	1506	AGBL2 (ENSDNOG00000013277)	C1QTNF4 (ENSDNOG00000041468)	FAM180B (ENSDNOG00000009566)	NDUFS3 (ENSDNOG00000009548)	KBTBD4 (ENSDNOG00000009543)	ENSDNOG00000025849	CELF1 (ENSDNOG00000009523)	RAPSN (ENSDNOG00000040969)	PSMC3 (ENSDNOG00000033470)	SLC39A13 (ENSDNOG00000018463)	SPI1 (ENSDNOG00000041462)	MYBPC3 (ENSDNOG00000042129)	MADD (ENSDNOG00000011229)	NR1H3 (ENSDNOG00000011206)	ACP2 (ENSDNOG00000044310)	PACSIN3 (ENSDNOG00000030783) ##22	ENSDNOG00000019820	ENSDNOG00000038982	CSTPP1 (ENSDNOG00000019818)	LRP4 (ENSDNOG00000019816)	CKAP5 (ENSDNOG00000012007)	F2 (ENSDNOG00000012528)	ZNF408 (ENSDNOG00000047669)	ARHGAP1 (ENSDNOG00000017314)	ATG13 (ENSDNOG00000002084)	HARBI1 (ENSDNOG00000002083)	ENSDNOG00000049497	AMBRA1 (ENSDNOG00000049694)	CHRM4 (ENSDNOG00000043079)	ENSDNOG00000037925	DGKZ (ENSDNOG00000024292)
Boreoeutheria	ANCESTRAL SPECIES	1	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00910000148141	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152
Euarchontoglires	ANCESTRAL SPECIES	1	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00910000148141	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848
Tree shrew	MODERN SPECIES	2428																ENSTBEG00000007718 ##22	ARFGAP2 (ENSTBEG00000006506)	CSTPP1 (ENSTBEG00000005477)
Glires	ANCESTRAL SPECIES	1	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848
Lagomorpha	ANCESTRAL SPECIES	4	ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000164059	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124	ENSGT00940000158758
Rabbit	MODERN SPECIES		MTCH2 (ENSOCUG00000006368)	C1QTNF4 (ENSOCUG00000006365)	FAM180B (ENSOCUG00000006361)	NDUFS3 (ENSOCUG00000006359)	KBTBD4 (ENSOCUG00000006353)	PTPMT1 (ENSOCUG00000021229)	CELF1 (ENSOCUG00000001311)	RAPSN (ENSOCUG00000008892)	PSMC3 (ENSOCUG00000026980)	SLC39A13 (ENSOCUG00000005557)	MYBPC3 (ENSOCUG00000002112)	MADD (ENSOCUG00000002099)	NR1H3 (ENSOCUG00000002095)	ACP2 (ENSOCUG00000013342)	DDB2 (ENSOCUG00000002076)	PACSIN3 (ENSOCUG00000027715) ##22	ENSOCUG00000002073	CSTPP1 (ENSOCUG00000002066)	LRP4 (ENSOCUG00000002052)	CKAP5 (ENSOCUG00000016200)	ZNF408 (ENSOCUG00000010953)	ARHGAP1 (ENSOCUG00000016160)	ATG13 (ENSOCUG00000016144)	HARBI1 (ENSOCUG00000016137)	AMBRA1 (ENSOCUG00000016117)	CHRM4 (ENSOCUG00000021064)	ENSOCUG00000024752	CREB3L1 (ENSOCUG00000004418)	PHF21A (ENSOCUG00000001675)	LARGE2 (ENSOCUG00000001671)	PEX16 (ENSOCUG00000001670)
Pika	MODERN SPECIES	3586											MYBPC3 (ENSOPRG00000009569)	MADD (ENSOPRG00000009509)	NR1H3 (ENSOPRG00000009497)	ACP2 (ENSOPRG00000009485)	DDB2 (ENSOPRG00000009468)	PACSIN3 (ENSOPRG00000009451) ##22	ARFGAP2 (ENSOPRG00000009432)	CSTPP1 (ENSOPRG00000009417)	LRP4 (ENSOPRG00000009347)	CKAP5 (ENSOPRG00000009287)	ENSOPRG00000009249	ZNF408 (ENSOPRG00000009225)	ARHGAP1 (ENSOPRG00000009201)	ATG13 (ENSOPRG00000009172)
Rodentia	ANCESTRAL SPECIES	1	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00860000136066
Rodentia_B	ANCESTRAL SPECIES	5	ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00860000136066
Myomorpha	ANCESTRAL SPECIES	4	ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00860000136066
Muroidea	ANCESTRAL SPECIES	2	ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00860000136066
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00860000136066
Cricetidae	ANCESTRAL SPECIES	5	ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00860000136066	ENSGT00940000159848
Cricetidae_B	ANCESTRAL SPECIES	34	ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Northern American deer mouse	MODERN SPECIES	17	Agbl2 (ENSPEMG00000001437)	Mtch2 (ENSPEMG00000010063)	C1qtnf4 (ENSPEMG00000024602)	Ndufs3 (ENSPEMG00000007248)	Kbtbd4 (ENSPEMG00000001992)	Ptpmt1 (ENSPEMG00000030250)	Celf1 (ENSPEMG00000015644)	Rapsn (ENSPEMG00000016952)	Slc39a13 (ENSPEMG00000016290)	Spi1 (ENSPEMG00000009647)	Mybpc3 (ENSPEMG00000009479)	Madd (ENSPEMG00000001264)	Nr1h3 (ENSPEMG00000018824)	Acp2 (ENSPEMG00000011860)	Ddb2 (ENSPEMG00000012899)	Pacsin3 (ENSPEMG00000018424) ##22	Arfgap2 (ENSPEMG00000009220)	Cstpp1 (ENSPEMG00000018931)	Lrp4 (ENSPEMG00000015598)	Ckap5 (ENSPEMG00000007231)	F2 (ENSPEMG00000018118)	Zfp408 (ENSPEMG00000016757)	Arhgap1 (ENSPEMG00000011370)	Atg13 (ENSPEMG00000017021)	Harbi1 (ENSPEMG00000013606)	ENSPEMG00000025318	Ambra1 (ENSPEMG00000005111)	Chrm4 (ENSPEMG00000028345)	Mdk (ENSPEMG00000014123)	Dgkz (ENSPEMG00000009628)	Creb3l1 (ENSPEMG00000019031)
Prairie vole	MODERN SPECIES	81	C1qtnf4 (ENSMOCG00000013500)	Ndufs3 (ENSMOCG00000009375)	Kbtbd4 (ENSMOCG00000021780)	Ptpmt1 (ENSMOCG00000018913)	Celf1 (ENSMOCG00000012633)	Rapsn (ENSMOCG00000012267)	Psmc3 (ENSMOCG00000001464)	ENSMOCG00000006097	ENSMOCG00000008195	Spi1 (ENSMOCG00000006114)	Mybpc3 (ENSMOCG00000008344)	Madd (ENSMOCG00000003278)	Nr1h3 (ENSMOCG00000010671)	Acp2 (ENSMOCG00000002882)	Ddb2 (ENSMOCG00000021291)	Pacsin3 (ENSMOCG00000022577) ##22	Arfgap2 (ENSMOCG00000016700)	Cstpp1 (ENSMOCG00000006672)	Lrp4 (ENSMOCG00000005823)	Ckap5 (ENSMOCG00000022214)	F2 (ENSMOCG00000019585)	Arhgap1 (ENSMOCG00000008533)	Atg13 (ENSMOCG00000018209)	ENSMOCG00000007253	Ambra1 (ENSMOCG00000018792)	Chrm4 (ENSMOCG00000016103)	Mdk (ENSMOCG00000014474)	Dgkz (ENSMOCG00000000694)	Creb3l1 (ENSMOCG00000012802)	Phf21a (ENSMOCG00000018126)	Large2 (ENSMOCG00000004366)
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00860000136066	ENSGT00940000159848
Chinese hamster chok1gshd	MODERN SPECIES	188	Mtch2 (ENSCGRG00001024807)	C1qtnf4 (ENSCGRG00001007540)	Ndufs3 (ENSCGRG00001024136)	Kbtbd4 (ENSCGRG00001023919)	Ptpmt1 (ENSCGRG00001012152)	Celf1 (ENSCGRG00001011274)	Rapsn (ENSCGRG00001009650)	Psmc3 (ENSCGRG00001005657)	Slc39a13 (ENSCGRG00001003447)	Spi1 (ENSCGRG00001009684)	Mybpc3 (ENSCGRG00001006702)	Madd (ENSCGRG00001024681)	Nr1h3 (ENSCGRG00001022656)	Acp2 (ENSCGRG00001022138)	Ddb2 (ENSCGRG00001012939)	Pacsin3 (ENSCGRG00001011840) ##22	Arfgap2 (ENSCGRG00001010700)	Cstpp1 (ENSCGRG00001020042)	Lrp4 (ENSCGRG00001018783)	Ckap5 (ENSCGRG00001013368)	F2 (ENSCGRG00001023426)	Zfp408 (ENSCGRG00001023588)	Arhgap1 (ENSCGRG00001023260)	ENSCGRG00001022859	Atg13 (ENSCGRG00001022112)	Harbi1 (ENSCGRG00001021313)	Ambra1 (ENSCGRG00001020313)	Chrm4 (ENSCGRG00001012019)	Mdk (ENSCGRG00001022566)	ENSCGRG00001011874	Dgkz (ENSCGRG00001021082)
Golden Hamster	MODERN SPECIES	618	Mtch2 (ENSMAUG00000009619)	C1qtnf4 (ENSMAUG00000009128)	Ndufs3 (ENSMAUG00000010036)	Kbtbd4 (ENSMAUG00000009694)	Ptpmt1 (ENSMAUG00000010436)	Celf1 (ENSMAUG00000009468)	Rapsn (ENSMAUG00000008690)	Psmc3 (ENSMAUG00000007346)	ENSMAUG00000009110	Spi1 (ENSMAUG00000008854)	Mybpc3 (ENSMAUG00000008229)	Madd (ENSMAUG00000009156)	Nr1h3 (ENSMAUG00000008657)	Acp2 (ENSMAUG00000007767)	Ddb2 (ENSMAUG00000010179)	Pacsin3 (ENSMAUG00000009572) ##22	Arfgap2 (ENSMAUG00000009218)	ENSMAUG00000008870	ENSMAUG00000008742	Cstpp1 (ENSMAUG00000008635)	Lrp4 (ENSMAUG00000016435)	Ckap5 (ENSMAUG00000012944)	F2 (ENSMAUG00000009414)	Arhgap1 (ENSMAUG00000012048)	Atg13 (ENSMAUG00000011052)	Harbi1 (ENSMAUG00000012193)	Ambra1 (ENSMAUG00000008821)	Chrm4 (ENSMAUG00000007510)	Mdk (ENSMAUG00000006759)	Dgkz (ENSMAUG00000008433)	Creb3l1 (ENSMAUG00000003224)
Murinae	ANCESTRAL SPECIES	1	ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00860000136066
Mus	ANCESTRAL SPECIES	1	ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00860000136066
Mus_A	ANCESTRAL SPECIES		ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b.g	ENSGT00940000156152	ENSGT00860000136066
Mus_B	ANCESTRAL SPECIES	1	ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b.g	ENSGT00940000156152	ENSGT00860000136066
Mus_C	ANCESTRAL SPECIES		ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00960000189374	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b.g	ENSGT00940000156152	ENSGT00860000136066
spretus	MODERN SPECIES	11	Agbl2 (MGP_SPRETEiJ_G0024854)	Mtch2 (MGP_SPRETEiJ_G0024855)	C1qtnf4 (MGP_SPRETEiJ_G0024856)	Ndufs3 (MGP_SPRETEiJ_G0024857)	Kbtbd4 (MGP_SPRETEiJ_G0024858)	Celf1 (MGP_SPRETEiJ_G0024859)	Rapsn (MGP_SPRETEiJ_G0024860)	Psmc3 (MGP_SPRETEiJ_G0024861)	Slc39a13 (MGP_SPRETEiJ_G0024862)	Spi1 (MGP_SPRETEiJ_G0024863)	Mybpc3 (MGP_SPRETEiJ_G0024864)	Madd (MGP_SPRETEiJ_G0024865)	Nr1h3 (MGP_SPRETEiJ_G0024866)	Acp2 (MGP_SPRETEiJ_G0024867)	Ddb2 (MGP_SPRETEiJ_G0024868)	Pacsin3 (MGP_SPRETEiJ_G0024869) ##22	Arfgap2 (MGP_SPRETEiJ_G0024870)	Cstpp1 (MGP_SPRETEiJ_G0024871)	Lrp4 (MGP_SPRETEiJ_G0024872)	Ckap5 (MGP_SPRETEiJ_G0024873)	F2 (MGP_SPRETEiJ_G0024874)	Zfp408 (MGP_SPRETEiJ_G0024875)	Arhgap1 (MGP_SPRETEiJ_G0024876)	Atg13 (MGP_SPRETEiJ_G0024877)	Harbi1 (MGP_SPRETEiJ_G0024878)	Ambra1 (MGP_SPRETEiJ_G0024879)	Chrm4 (MGP_SPRETEiJ_G0024880)	Mdk (MGP_SPRETEiJ_G0024881)	Dgkz (MGP_SPRETEiJ_G0024882)	MGP_SPRETEiJ_G0024883	Creb3l1 (MGP_SPRETEiJ_G0024884)
Steppe mouse	MODERN SPECIES	36	C1qtnf4 (ENSMSIG00000027637)	Ndufs3 (ENSMSIG00000027630)	Kbtbd4 (ENSMSIG00000027623)	ENSMSIG00000027615	Celf1 (ENSMSIG00000027572)	ENSMSIG00000027554	Rapsn (ENSMSIG00000027530)	Psmc3 (ENSMSIG00000027459)	Slc39a13 (ENSMSIG00000027429)	Spi1 (ENSMSIG00000027421)	Mybpc3 (ENSMSIG00000027308)	Madd (ENSMSIG00000021063)	Nr1h3 (ENSMSIG00000020950)	Acp2 (ENSMSIG00000020936)	Ddb2 (ENSMSIG00000020921)	Pacsin3 (ENSMSIG00000020892) ##22	Arfgap2 (ENSMSIG00000020760)	ENSMSIG00000020727	ENSMSIG00000020721	Lrp4 (ENSMSIG00000020667)	ENSMSIG00000020658	Ckap5 (ENSMSIG00000020211)	F2 (ENSMSIG00000020083)	Zfp408 (ENSMSIG00000020068)	Arhgap1 (ENSMSIG00000020000)	Atg13 (ENSMSIG00000019915)	Harbi1 (ENSMSIG00000019911)	Ambra1 (ENSMSIG00000019820)	Chrm4 (ENSMSIG00000019816)	Mdk (ENSMSIG00000019785)	ENSMSIG00000019782
Mouse	MODERN SPECIES	11	Mtch2 (ENSMUSG00000027282)	C1qtnf4 (ENSMUSG00000040794)	Ndufs3 (ENSMUSG00000005510)	Kbtbd4 (ENSMUSG00000005505)	Ptpmt1 (ENSMUSG00000063235)	Celf1 (ENSMUSG00000005506)	Rapsn (ENSMUSG00000002104)	Psmc3 (ENSMUSG00000002102)	Slc39a13 (ENSMUSG00000002105)	Spi1 (ENSMUSG00000002111)	Mybpc3 (ENSMUSG00000002100)	Madd (ENSMUSG00000040687)	Nr1h3 (ENSMUSG00000002108)	Acp2 (ENSMUSG00000002103)	Ddb2 (ENSMUSG00000002109)	Pacsin3 (ENSMUSG00000027257) ##22	Arfgap2 (ENSMUSG00000027255)	Cstpp1 (ENSMUSG00000040591)	Lrp4 (ENSMUSG00000027253)	Ckap5 (ENSMUSG00000040549)	F2 (ENSMUSG00000027249)	Zfp408 (ENSMUSG00000075040)	Arhgap1 (ENSMUSG00000027247)	Atg13 (ENSMUSG00000027244)	Harbi1 (ENSMUSG00000027243)	Ambra1 (ENSMUSG00000040506)	Chrm4 (ENSMUSG00000040495)	Mdk (ENSMUSG00000027239)	Dgkz (ENSMUSG00000040479)	Creb3l1 (ENSMUSG00000027230)	Phf21a (ENSMUSG00000058318)
Ryukyu mouse	MODERN SPECIES	11	Agbl2 (MGP_CAROLIEiJ_G0023943)	Mtch2 (MGP_CAROLIEiJ_G0023944)	Madd (MGP_CAROLIEiJ_G0023945)	C1qtnf4 (MGP_CAROLIEiJ_G0023946)	Ndufs3 (MGP_CAROLIEiJ_G0023947)	Kbtbd4 (MGP_CAROLIEiJ_G0023948)	Celf1 (MGP_CAROLIEiJ_G0023949)	Rapsn (MGP_CAROLIEiJ_G0023950)	Psmc3 (MGP_CAROLIEiJ_G0023951)	Slc39a13 (MGP_CAROLIEiJ_G0023952)	Spi1 (MGP_CAROLIEiJ_G0023953)	Mybpc3 (MGP_CAROLIEiJ_G0023954)	Nr1h3 (MGP_CAROLIEiJ_G0023955)	Acp2 (MGP_CAROLIEiJ_G0023956)	Ddb2 (MGP_CAROLIEiJ_G0023957)	Pacsin3 (MGP_CAROLIEiJ_G0023958) ##22	Arfgap2 (MGP_CAROLIEiJ_G0023959)	Cstpp1 (MGP_CAROLIEiJ_G0023960)	MGP_CAROLIEiJ_G0023961	Lrp4 (MGP_CAROLIEiJ_G0023962)	Ckap5 (MGP_CAROLIEiJ_G0023963)	F2 (MGP_CAROLIEiJ_G0023964)	Zfp408 (MGP_CAROLIEiJ_G0023965)	Arhgap1 (MGP_CAROLIEiJ_G0023966)	Atg13 (MGP_CAROLIEiJ_G0023967)	Harbi1 (MGP_CAROLIEiJ_G0023968)	Ambra1 (MGP_CAROLIEiJ_G0023969)	Chrm4 (MGP_CAROLIEiJ_G0023970)	Mdk (MGP_CAROLIEiJ_G0023971)	Dgkz (MGP_CAROLIEiJ_G0023972)	MGP_CAROLIEiJ_G0023973
Shrew mouse	MODERN SPECIES	16	Agbl2 (MGP_PahariEiJ_G0025380)	Mtch2 (MGP_PahariEiJ_G0025381)	C1qtnf4 (MGP_PahariEiJ_G0025382)	Ndufs3 (MGP_PahariEiJ_G0025383)	Kbtbd4 (MGP_PahariEiJ_G0025384)	Celf1 (MGP_PahariEiJ_G0025385)	Rapsn (MGP_PahariEiJ_G0025386)	Psmc3 (MGP_PahariEiJ_G0025387)	Slc39a13 (MGP_PahariEiJ_G0025388)	Spi1 (MGP_PahariEiJ_G0025389)	Mybpc3 (MGP_PahariEiJ_G0025390)	Madd (MGP_PahariEiJ_G0025391)	Nr1h3 (MGP_PahariEiJ_G0025392)	Acp2 (MGP_PahariEiJ_G0025393)	Ddb2 (MGP_PahariEiJ_G0025394)	Pacsin3 (MGP_PahariEiJ_G0025395) ##22	Arfgap2 (MGP_PahariEiJ_G0025396)	Cstpp1 (MGP_PahariEiJ_G0025397)	MGP_PahariEiJ_G0025398	Lrp4 (MGP_PahariEiJ_G0025399)	Ckap5 (MGP_PahariEiJ_G0025400)	F2 (MGP_PahariEiJ_G0025401)	Zfp408 (MGP_PahariEiJ_G0025402)	Arhgap1 (MGP_PahariEiJ_G0025403)	Atg13 (MGP_PahariEiJ_G0025404)	Harbi1 (MGP_PahariEiJ_G0025405)	Ambra1 (MGP_PahariEiJ_G0025406)	Chrm4 (MGP_PahariEiJ_G0025407)	Mdk (MGP_PahariEiJ_G0025408)	Dgkz (MGP_PahariEiJ_G0025409)	MGP_PahariEiJ_G0025410
Rat	MODERN SPECIES	13	Mtch2 (ENSRNOG00000058658)	C1qtnf4 (ENSRNOG00000069579)	Ndufs3 (ENSRNOG00000009155)	Kbtbd4 (ENSRNOG00000009397)	Ptpmt1 (ENSRNOG00000009723)	Celf1 (ENSRNOG00000010379)	Rapsn (ENSRNOG00000011208)	Psmc3 (ENSRNOG00000011414)	Slc39a13 (ENSRNOG00000011981)	Spi1 (ENSRNOG00000012172)	Mybpc3 (ENSRNOG00000012307)	Madd (ENSRNOG00000012568)	Nr1h3 (ENSRNOG00000013172)	Acp2 (ENSRNOG00000013594)	Ddb2 (ENSRNOG00000014071)	Pacsin3 (ENSRNOG00000014204) ##22	Arfgap2 (ENSRNOG00000014429)	Cstpp1 (ENSRNOG00000014798)	Lrp4 (ENSRNOG00000015285)	Ckap5 (ENSRNOG00000016067)	F2 (ENSRNOG00000016325)	ENSRNOG00000070459	Arhgap1 (ENSRNOG00000016610)	Atg13 (ENSRNOG00000016984)	Ambra1 (ENSRNOG00000017422)	Chrm4 (ENSRNOG00000017556)	Mdk (ENSRNOG00000017560)	Dgkz (ENSRNOG00000017737)	Creb3l1 (ENSRNOG00000005413)	Phf21a (ENSRNOG00000006063)	Large2 (ENSRNOG00000006353)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1238	C1qtnf4 (ENSNGAG00000009680)	Ndufs3 (ENSNGAG00000012046)	Kbtbd4 (ENSNGAG00000000276)	Ptpmt1 (ENSNGAG00000017776)	ENSNGAG00000018260	Celf1 (ENSNGAG00000017390)	Rapsn (ENSNGAG00000007295)	Psmc3 (ENSNGAG00000017843)	Slc39a13 (ENSNGAG00000017536)	Spi1 (ENSNGAG00000010713)	Mybpc3 (ENSNGAG00000000260)	Madd (ENSNGAG00000017768)	Nr1h3 (ENSNGAG00000015402)	Acp2 (ENSNGAG00000007455)	Ddb2 (ENSNGAG00000017336)	Pacsin3 (ENSNGAG00000014205) ##22	Arfgap2 (ENSNGAG00000009124)	Cstpp1 (ENSNGAG00000000171)	Lrp4 (ENSNGAG00000020436)	Ckap5 (ENSNGAG00000001579)	F2 (ENSNGAG00000010351)	Zfp408 (ENSNGAG00000000309)	Arhgap1 (ENSNGAG00000013969)	Atg13 (ENSNGAG00000015785)	ENSNGAG00000012504
Lesser Egyptian jerboa	MODERN SPECIES	62	Agbl2 (ENSJJAG00000022894)	Mtch2 (ENSJJAG00000011880)	C1qtnf4 (ENSJJAG00000023278)	Ndufs3 (ENSJJAG00000023557)	Kbtbd4 (ENSJJAG00000020543)	Celf1 (ENSJJAG00000020280)	Rapsn (ENSJJAG00000020297)	Psmc3 (ENSJJAG00000021354)	Slc39a13 (ENSJJAG00000007370)	Spi1 (ENSJJAG00000019221)	Mybpc3 (ENSJJAG00000018706)	Madd (ENSJJAG00000015606)	Nr1h3 (ENSJJAG00000020697)	Acp2 (ENSJJAG00000019515)	Ddb2 (ENSJJAG00000016552)	Pacsin3 (ENSJJAG00000023252) ##22	Arfgap2 (ENSJJAG00000003129)	Cstpp1 (ENSJJAG00000008330)	Lrp4 (ENSJJAG00000014851)	Ckap5 (ENSJJAG00000023265)	F2 (ENSJJAG00000005619)	Zfp408 (ENSJJAG00000015381)	Arhgap1 (ENSJJAG00000022610)	Atg13 (ENSJJAG00000024173)	ENSJJAG00000015195	ENSJJAG00000016975	Ambra1 (ENSJJAG00000004138)	Chrm4 (ENSJJAG00000010466)	Mdk (ENSJJAG00000023305)	Dgkz (ENSJJAG00000003197)	Creb3l1 (ENSJJAG00000014152)
Kangaroo rat	MODERN SPECIES	444	Agbl2 (ENSDORG00000025903)	Mtch2 (ENSDORG00000001511)	C1qtnf4 (ENSDORG00000015597)	Kbtbd4 (ENSDORG00000015593)	Ptpmt1 (ENSDORG00000015591)	Celf1 (ENSDORG00000013721)	Rapsn (ENSDORG00000000757)	Psmc3 (ENSDORG00000000756)	Slc39a13 (ENSDORG00000000753)	Spi1 (ENSDORG00000007758)	Mybpc3 (ENSDORG00000007751)	Madd (ENSDORG00000007749)	Nr1h3 (ENSDORG00000007747)	Acp2 (ENSDORG00000007743)	Ddb2 (ENSDORG00000007741)	ENSDORG00000013060 ##22	Arfgap2 (ENSDORG00000013057)	Cstpp1 (ENSDORG00000013052)	Lrp4 (ENSDORG00000001785)	Ckap5 (ENSDORG00000011373)	F2 (ENSDORG00000029579)	Zfp408 (ENSDORG00000000387)	Arhgap1 (ENSDORG00000000385)	Atg13 (ENSDORG00000000382)	ENSDORG00000028941	Ambra1 (ENSDORG00000008382)	Chrm4 (ENSDORG00000024984)	Mdk (ENSDORG00000029447)	Dgkz (ENSDORG00000008377)	ENSDORG00000028371	Creb3l1 (ENSDORG00000023541)
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00860000136066	ENSGT00940000159848
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Marmotini	ANCESTRAL SPECIES	22	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Marmotini_b	ANCESTRAL SPECIES	23	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Arctic ground squirrel	MODERN SPECIES	208	FAM180B (ENSUPAG00010014076)	NDUFS3 (ENSUPAG00010014067)	KBTBD4 (ENSUPAG00010014056)	ENSUPAG00010014045	CELF1 (ENSUPAG00010013973)	RAPSN (ENSUPAG00010013926)	PSMC3 (ENSUPAG00010013908)	SLC39A13 (ENSUPAG00010013855)	SPI1 (ENSUPAG00010013850)	ENSUPAG00010013841	MYBPC3 (ENSUPAG00010013812)	MADD (ENSUPAG00010011229)	NR1H3 (ENSUPAG00010011188)	ACP2 (ENSUPAG00010011162)	DDB2 (ENSUPAG00010011149)	PACSIN3 (ENSUPAG00010011141) ##22	ARFGAP2 (ENSUPAG00010011117)	CSTPP1 (ENSUPAG00010011093)	LRP4 (ENSUPAG00010011049)	CKAP5 (ENSUPAG00010010730)	F2 (ENSUPAG00010010714)	ZNF408 (ENSUPAG00010010704)	ARHGAP1 (ENSUPAG00010010696)	ATG13 (ENSUPAG00010010621)	HARBI1 (ENSUPAG00010010611)	AMBRA1 (ENSUPAG00010010430)	CHRM4 (ENSUPAG00010010417)	MDK (ENSUPAG00010010379)	DGKZ (ENSUPAG00010010211)	CREB3L1 (ENSUPAG00010010194)	PHF21A (ENSUPAG00010009105)
Squirrel	MODERN SPECIES	162	C1QTNF4 (ENSSTOG00000024273)	FAM180B (ENSSTOG00000000628)	NDUFS3 (ENSSTOG00000000622)	KBTBD4 (ENSSTOG00000020864)	PTPMT1 (ENSSTOG00000019770)	CELF1 (ENSSTOG00000000613)	RAPSN (ENSSTOG00000011047)	PSMC3 (ENSSTOG00000011038)	SLC39A13 (ENSSTOG00000027722)	SPI1 (ENSSTOG00000022735)	MYBPC3 (ENSSTOG00000026473)	MADD (ENSSTOG00000007626)	NR1H3 (ENSSTOG00000007611)	ACP2 (ENSSTOG00000007586)	DDB2 (ENSSTOG00000007571)	PACSIN3 (ENSSTOG00000007547) ##22	ARFGAP2 (ENSSTOG00000007524)	CSTPP1 (ENSSTOG00000007512)	LRP4 (ENSSTOG00000005236)	CKAP5 (ENSSTOG00000005158)	F2 (ENSSTOG00000005130)	ZNF408 (ENSSTOG00000005114)	ARHGAP1 (ENSSTOG00000026557)	ATG13 (ENSSTOG00000005077)	HARBI1 (ENSSTOG00000005072)	AMBRA1 (ENSSTOG00000019411)	CHRM4 (ENSSTOG00000022455)	MDK (ENSSTOG00000027636)	DGKZ (ENSSTOG00000012704)	CREB3L1 (ENSSTOG00000012697)	PHF21A (ENSSTOG00000011552)
Alpin marmot	MODERN SPECIES	3	ENSMMMG00000015683	FAM180B (ENSMMMG00000015675)	NDUFS3 (ENSMMMG00000015667)	KBTBD4 (ENSMMMG00000015654)	ENSMMMG00000015652	CELF1 (ENSMMMG00000015346)	RAPSN (ENSMMMG00000015294)	PSMC3 (ENSMMMG00000015270)	SLC39A13 (ENSMMMG00000015224)	SPI1 (ENSMMMG00000015212)	MYBPC3 (ENSMMMG00000015189)	MADD (ENSMMMG00000014606)	NR1H3 (ENSMMMG00000014541)	ACP2 (ENSMMMG00000014527)	DDB2 (ENSMMMG00000014518)	PACSIN3 (ENSMMMG00000014498) ##22	ARFGAP2 (ENSMMMG00000014424)	CSTPP1 (ENSMMMG00000014382)	LRP4 (ENSMMMG00000014335)	CKAP5 (ENSMMMG00000013993)	F2 (ENSMMMG00000013961)	ZNF408 (ENSMMMG00000013944)	ARHGAP1 (ENSMMMG00000013934)	ATG13 (ENSMMMG00000013875)	HARBI1 (ENSMMMG00000013860)	AMBRA1 (ENSMMMG00000013284)	CHRM4 (ENSMMMG00000013278)	MDK (ENSMMMG00000013259)	DGKZ (ENSMMMG00000013155)	CREB3L1 (ENSMMMG00000013137)	PHF21A (ENSMMMG00000012404)
Eurasian red squirrel	MODERN SPECIES	2	KBTBD4 (ENSSVLG00005009359)	PTPMT1 (ENSSVLG00005009417)	CELF1 (ENSSVLG00005009492)	RAPSN (ENSSVLG00005009920)	ENSSVLG00005009993	ENSSVLG00005010167	ENSSVLG00005010225	ENSSVLG00005010302	SPI1 (ENSSVLG00005010597)	MYBPC3 (ENSSVLG00005010729)	MADD (ENSSVLG00005011762)	ENSSVLG00005012055	NR1H3 (ENSSVLG00005012159)	ACP2 (ENSSVLG00005012397)	DDB2 (ENSSVLG00005012634)	PACSIN3 (ENSSVLG00005013010) ##22	ARFGAP2 (ENSSVLG00005013354)	CSTPP1 (ENSSVLG00005013495)	LRP4 (ENSSVLG00005013702)	CKAP5 (ENSSVLG00005013939)	F2 (ENSSVLG00005014116)	ARHGAP1 (ENSSVLG00005014685)	ENSSVLG00005014869	HARBI1 (ENSSVLG00005015510)	AMBRA1 (ENSSVLG00005015569)	CHRM4 (ENSSVLG00005015740)	MDK (ENSSVLG00005015782)	DGKZ (ENSSVLG00005015887)	ENSSVLG00005015926	CREB3L1 (ENSSVLG00005015955)	PHF21A (ENSSVLG00005016012)
Hystricomorpha	ANCESTRAL SPECIES	16	ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00860000136066	ENSGT00940000159848	ENSGT00940000156124
Hystricomorpha_a	ANCESTRAL SPECIES	12	ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00860000136066	ENSGT00940000159848	ENSGT00940000156124
Guinea pig	MODERN SPECIES	72	MTCH2 (ENSCPOG00000006293)	C1QTNF4 (ENSCPOG00000023948)	NDUFS3 (ENSCPOG00000006141)	KBTBD4 (ENSCPOG00000019448)	PTPMT1 (ENSCPOG00000031147)	CELF1 (ENSCPOG00000036381)	RAPSN (ENSCPOG00000015456)	PSMC3 (ENSCPOG00000008176)	SLC39A13 (ENSCPOG00000008169)	SPI1 (ENSCPOG00000022138)	MYBPC3 (ENSCPOG00000013368)	MADD (ENSCPOG00000013364)	NR1H3 (ENSCPOG00000013362)	ACP2 (ENSCPOG00000013359)	DDB2 (ENSCPOG00000013358)	PACSIN3 (ENSCPOG00000013356) ##22	ARFGAP2 (ENSCPOG00000013352)	CSTPP1 (ENSCPOG00000020334)	LRP4 (ENSCPOG00000007072)	CKAP5 (ENSCPOG00000007054)	F2 (ENSCPOG00000026682)	ARHGAP1 (ENSCPOG00000013046)	ATG13 (ENSCPOG00000013042)	HARBI1 (ENSCPOG00000037304)	AMBRA1 (ENSCPOG00000007341)	CHRM4 (ENSCPOG00000020788)	MDK (ENSCPOG00000007340)	DGKZ (ENSCPOG00000009636)	CREB3L1 (ENSCPOG00000010073)	PHF21A (ENSCPOG00000001299)	LARGE2 (ENSCPOG00000033339)
Hystricomorpha_b	ANCESTRAL SPECIES	10	ENSGT00940000160201	ENSGT00390000000020.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00860000136066	ENSGT00940000159848	ENSGT00940000156124
Long-tailed chinchilla	MODERN SPECIES	129	FNBP4 (ENSCLAG00000014534)	MTCH2 (ENSCLAG00000012026)	C1QTNF4 (ENSCLAG00000015186)	NDUFS3 (ENSCLAG00000014873)	KBTBD4 (ENSCLAG00000016255)	CELF1 (ENSCLAG00000011791)	RAPSN (ENSCLAG00000015497)	PSMC3 (ENSCLAG00000013916)	SLC39A13 (ENSCLAG00000014480)	SPI1 (ENSCLAG00000017201)	MYBPC3 (ENSCLAG00000015418)	MADD (ENSCLAG00000012503)	NR1H3 (ENSCLAG00000013563)	ACP2 (ENSCLAG00000014608)	DDB2 (ENSCLAG00000016473)	ENSCLAG00000012709 ##22	ARFGAP2 (ENSCLAG00000016467)	CSTPP1 (ENSCLAG00000014110)	LRP4 (ENSCLAG00000016159)	CKAP5 (ENSCLAG00000015801)	F2 (ENSCLAG00000015618)	ARHGAP1 (ENSCLAG00000013542)	ATG13 (ENSCLAG00000015328)	HARBI1 (ENSCLAG00000013578)	AMBRA1 (ENSCLAG00000015156)	CHRM4 (ENSCLAG00000013251)	MDK (ENSCLAG00000014462)	DGKZ (ENSCLAG00000016057)	ENSCLAG00000014194	CREB3L1 (ENSCLAG00000013609)	PHF21A (ENSCLAG00000016632)
Degu	MODERN SPECIES	59	NUP160 (ENSODEG00000015381)	FNBP4 (ENSODEG00000016574)	AGBL2 (ENSODEG00000016111)	MTCH2 (ENSODEG00000015416)	NDUFS3 (ENSODEG00000015948)	KBTBD4 (ENSODEG00000015830)	CELF1 (ENSODEG00000015204)	RAPSN (ENSODEG00000015194)	ENSODEG00000016550	SLC39A13 (ENSODEG00000015895)	SPI1 (ENSODEG00000015369)	MYBPC3 (ENSODEG00000016030)	MADD (ENSODEG00000017645)	NR1H3 (ENSODEG00000016180)	ACP2 (ENSODEG00000015528)	ENSODEG00000015965 ##22	ENSODEG00000016456	CSTPP1 (ENSODEG00000016656)	LRP4 (ENSODEG00000015720)	CKAP5 (ENSODEG00000016409)	F2 (ENSODEG00000016157)	ARHGAP1 (ENSODEG00000016156)	ATG13 (ENSODEG00000017294)	ENSODEG00000016339	AMBRA1 (ENSODEG00000016633)	CHRM4 (ENSODEG00000020352)	MDK (ENSODEG00000015931)	DGKZ (ENSODEG00000016309)	ENSODEG00000016420	ENSODEG00000016039	CREB3L1 (ENSODEG00000016017)
Primates	ANCESTRAL SPECIES		ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00910000148141	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848
Strepsirrhini	ANCESTRAL SPECIES	6	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Lemuriformes	ANCESTRAL SPECIES	16	ENSGT00390000000020.b	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Lemuriformes_a	ANCESTRAL SPECIES	75	ENSGT00390000000020.b	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Coquerels sifaka	MODERN SPECIES	328	MTCH2 (ENSPCOG00000018416)	FAM180B (ENSPCOG00000014736)	NDUFS3 (ENSPCOG00000012926)	KBTBD4 (ENSPCOG00000017241)	PTPMT1 (ENSPCOG00000026725)	CELF1 (ENSPCOG00000021865)	RAPSN (ENSPCOG00000019055)	PSMC3 (ENSPCOG00000020878)	SLC39A13 (ENSPCOG00000020868)	SPI1 (ENSPCOG00000026208)	MYBPC3 (ENSPCOG00000018047)	MADD (ENSPCOG00000013832)	NR1H3 (ENSPCOG00000023831)	ACP2 (ENSPCOG00000027729)	DDB2 (ENSPCOG00000022207)	PACSIN3 (ENSPCOG00000020469) ##22	ARFGAP2 (ENSPCOG00000028490)	CSTPP1 (ENSPCOG00000013763)	LRP4 (ENSPCOG00000028608)	CKAP5 (ENSPCOG00000017517)	F2 (ENSPCOG00000018345)	ZNF408 (ENSPCOG00000028698)	ARHGAP1 (ENSPCOG00000020308)	ATG13 (ENSPCOG00000023763)	HARBI1 (ENSPCOG00000027989)	AMBRA1 (ENSPCOG00000028231)	CHRM4 (ENSPCOG00000013773)	MDK (ENSPCOG00000017622)	DGKZ (ENSPCOG00000026865)	CREB3L1 (ENSPCOG00000025289)	PHF21A (ENSPCOG00000005609)
Greater bamboo lemur	MODERN SPECIES	1076	ENSPSMG00000019906	FAM180B (ENSPSMG00000019935)	NDUFS3 (ENSPSMG00000019959)	KBTBD4 (ENSPSMG00000019995)	PTPMT1 (ENSPSMG00000020020)	CELF1 (ENSPSMG00000020100)	RAPSN (ENSPSMG00000020171)	PSMC3 (ENSPSMG00000020244)	SLC39A13 (ENSPSMG00000020336)	SPI1 (ENSPSMG00000020380)	MYBPC3 (ENSPSMG00000020533)	MADD (ENSPSMG00000021740)	NR1H3 (ENSPSMG00000022646)	ACP2 (ENSPSMG00000022714)	DDB2 (ENSPSMG00000022768)	PACSIN3 (ENSPSMG00000022785) ##22	ARFGAP2 (ENSPSMG00000022927)	CSTPP1 (ENSPSMG00000022997)
Mouse lemur	MODERN SPECIES	27	FAM180B (ENSMICG00000001091)	NDUFS3 (ENSMICG00000045989)	KBTBD4 (ENSMICG00000001087)	PTPMT1 (ENSMICG00000028273)	CELF1 (ENSMICG00000045113)	ENSMICG00000043341	RAPSN (ENSMICG00000007148)	PSMC3 (ENSMICG00000007138)	SLC39A13 (ENSMICG00000007125)	SPI1 (ENSMICG00000007120)	MYBPC3 (ENSMICG00000007096)	MADD (ENSMICG00000007074)	NR1H3 (ENSMICG00000007066)	ACP2 (ENSMICG00000007053)	DDB2 (ENSMICG00000007047)	PACSIN3 (ENSMICG00000007038) ##22	ENSMICG00000007019	CSTPP1 (ENSMICG00000007010)	LRP4 (ENSMICG00000006982)	CKAP5 (ENSMICG00000006951)	F2 (ENSMICG00000006934)	ZNF408 (ENSMICG00000045320)	ARHGAP1 (ENSMICG00000006918)	ATG13 (ENSMICG00000006905)	HARBI1 (ENSMICG00000029266)	AMBRA1 (ENSMICG00000006891)	CHRM4 (ENSMICG00000042428)	MDK (ENSMICG00000006889)	DGKZ (ENSMICG00000006865)	CREB3L1 (ENSMICG00000006853)	PHF21A (ENSMICG00000014259)
Bushbaby	MODERN SPECIES	116	FAM180B (ENSOGAG00000032394)	NDUFS3 (ENSOGAG00000011606)	ENSOGAG00000030764	KBTBD4 (ENSOGAG00000028799)	PTPMT1 (ENSOGAG00000031935)	CELF1 (ENSOGAG00000011600)	RAPSN (ENSOGAG00000027783)	ENSOGAG00000015289	SLC39A13 (ENSOGAG00000012440)	SPI1 (ENSOGAG00000012435)	MYBPC3 (ENSOGAG00000012425)	MADD (ENSOGAG00000012414)	NR1H3 (ENSOGAG00000012410)	ACP2 (ENSOGAG00000025562)	DDB2 (ENSOGAG00000012408)	PACSIN3 (ENSOGAG00000012403) ##22	ARFGAP2 (ENSOGAG00000012399)	ENSOGAG00000026518	CSTPP1 (ENSOGAG00000012396)	LRP4 (ENSOGAG00000011979)	CKAP5 (ENSOGAG00000004560)	F2 (ENSOGAG00000004555)	ZNF408 (ENSOGAG00000034080)	ARHGAP1 (ENSOGAG00000014288)	ATG13 (ENSOGAG00000004547)	HARBI1 (ENSOGAG00000004554)	ENSOGAG00000033750	AMBRA1 (ENSOGAG00000002355)	CHRM4 (ENSOGAG00000033812)	MDK (ENSOGAG00000002353)	DGKZ (ENSOGAG00000002350)
Haplorrhini	ANCESTRAL SPECIES		ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00910000148141	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848
Tarsier	MODERN SPECIES	4544												MADD (ENSTSYG00000001550)	NR1H3 (ENSTSYG00000001532)	ACP2 (ENSTSYG00000001510)	DDB2 (ENSTSYG00000001500)	PACSIN3 (ENSTSYG00000025849) ##22	ARFGAP2 (ENSTSYG00000014155)	CUNH11orf49 (ENSTSYG00000014153)	ENSTSYG00000033400
Simiiformes	ANCESTRAL SPECIES		ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E.s.b	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00910000148141	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848
Catarrhini	ANCESTRAL SPECIES	1	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E.s.b	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00910000148141	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848
Hominoidea	ANCESTRAL SPECIES	1	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E.s.b	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00910000148141	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848
Hominidae	ANCESTRAL SPECIES	1	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E.s.b	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	20	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E.s.b	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Homo/Pan group	ANCESTRAL SPECIES	1	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E.s.b	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Pan	ANCESTRAL SPECIES	1	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E.s.b	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00390000003248.a.b.a.b	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Chimpanzee	MODERN SPECIES	2	FAM180B (ENSPTRG00000023838)	NDUFS3 (ENSPTRG00000003571)	KBTBD4 (ENSPTRG00000003570)	PTPMT1 (ENSPTRG00000033944)	CELF1 (ENSPTRG00000052299)	RAPSN (ENSPTRG00000003567)	PSMC3 (ENSPTRG00000003565)	SLC39A13 (ENSPTRG00000003564)	SPI1 (ENSPTRG00000003563)	MYBPC3 (ENSPTRG00000003562)	MADD (ENSPTRG00000003561)	NR1H3 (ENSPTRG00000003560)	ACP2 (ENSPTRG00000003559)	DDB2 (ENSPTRG00000003558)	ENSPTRG00000045675	PACSIN3 (ENSPTRG00000003557) ##22	ARFGAP2 (ENSPTRG00000003556)	CSTPP1 (ENSPTRG00000003555)	LRP4 (ENSPTRG00000003554)	CKAP5 (ENSPTRG00000003553)	F2 (ENSPTRG00000003552)	ZNF408 (ENSPTRG00000003551)	ARHGAP1 (ENSPTRG00000003550)	ATG13 (ENSPTRG00000003549)	HARBI1 (ENSPTRG00000003548)	ENSPTRG00000043648	AMBRA1 (ENSPTRG00000003546)	CHRM4 (ENSPTRG00000038696)	MDK (ENSPTRG00000047115)	DGKZ (ENSPTRG00000003545)	CREB3L1 (ENSPTRG00000003543)
Bonobo	MODERN SPECIES	2	FAM180B (ENSPPAG00000030975)	NDUFS3 (ENSPPAG00000031162)	KBTBD4 (ENSPPAG00000031866)	PTPMT1 (ENSPPAG00000040774)	CELF1 (ENSPPAG00000033870)	RAPSN (ENSPPAG00000042512)	PSMC3 (ENSPPAG00000042401)	SLC39A13 (ENSPPAG00000042717)	SPI1 (ENSPPAG00000036814)	MYBPC3 (ENSPPAG00000030985)	MADD (ENSPPAG00000043339)	NR1H3 (ENSPPAG00000039033)	ACP2 (ENSPPAG00000042373)	DDB2 (ENSPPAG00000000958)	ENSPPAG00000021284	PACSIN3 (ENSPPAG00000040614) ##22	ARFGAP2 (ENSPPAG00000030940)	CSTPP1 (ENSPPAG00000040870)	LRP4 (ENSPPAG00000043379)	CKAP5 (ENSPPAG00000030676)	F2 (ENSPPAG00000041509)	ZNF408 (ENSPPAG00000034993)	ARHGAP1 (ENSPPAG00000027953)	ATG13 (ENSPPAG00000042268)	HARBI1 (ENSPPAG00000035636)	AMBRA1 (ENSPPAG00000034195)	CHRM4 (ENSPPAG00000025475)	MDK (ENSPPAG00000023561)	DGKZ (ENSPPAG00000038574)	CREB3L1 (ENSPPAG00000029634)	PHF21A (ENSPPAG00000040226)
Human	MODERN SPECIES	2	C1QTNF4 (ENSG00000172247)	FAM180B (ENSG00000196666)	KBTBD4 (ENSG00000123444)	PTPMT1 (ENSG00000110536)	NDUFS3 (ENSG00000213619)	CELF1 (ENSG00000149187)	RAPSN (ENSG00000165917)	PSMC3 (ENSG00000165916)	SLC39A13 (ENSG00000165915)	SPI1 (ENSG00000066336)	MYBPC3 (ENSG00000134571)	MADD (ENSG00000110514)	NR1H3 (ENSG00000025434)	ACP2 (ENSG00000134575)	DDB2 (ENSG00000134574)	PACSIN3 (ENSG00000165912) ##22	ARFGAP2 (ENSG00000149182)	CSTPP1 (ENSG00000149179)	LRP4 (ENSG00000134569)	CKAP5 (ENSG00000175216)	F2 (ENSG00000180210)	ZNF408 (ENSG00000175213)	ARHGAP1 (ENSG00000175220)	ATG13 (ENSG00000175224)	HARBI1 (ENSG00000180423)	AMBRA1 (ENSG00000110497)	CHRM4 (ENSG00000180720)	MDK (ENSG00000110492)	DGKZ (ENSG00000149091)	CREB3L1 (ENSG00000157613)	PHF21A (ENSG00000135365)
Gorilla	MODERN SPECIES	2	MTCH2 (ENSGGOG00000008281)	FAM180B (ENSGGOG00000014401)	NDUFS3 (ENSGGOG00000014393)	KBTBD4 (ENSGGOG00000013959)	PTPMT1 (ENSGGOG00000013954)	CELF1 (ENSGGOG00000004106)	RAPSN (ENSGGOG00000007325)	PSMC3 (ENSGGOG00000016530)	SLC39A13 (ENSGGOG00000016524)	SPI1 (ENSGGOG00000006485)	MYBPC3 (ENSGGOG00000006471)	MADD (ENSGGOG00000008588)	NR1H3 (ENSGGOG00000008583)	ACP2 (ENSGGOG00000008576)	DDB2 (ENSGGOG00000008569)	PACSIN3 (ENSGGOG00000008566) ##22	ARFGAP2 (ENSGGOG00000008555)	CSTPP1 (ENSGGOG00000008547)	LRP4 (ENSGGOG00000001024)	CKAP5 (ENSGGOG00000006980)	F2 (ENSGGOG00000006967)	ZNF408 (ENSGGOG00000010152)	ARHGAP1 (ENSGGOG00000005697)	ATG13 (ENSGGOG00000005689)	HARBI1 (ENSGGOG00000004410)	AMBRA1 (ENSGGOG00000011880)	CHRM4 (ENSGGOG00000026871)	MDK (ENSGGOG00000011872)	DGKZ (ENSGGOG00000011849)	CREB3L1 (ENSGGOG00000015181)	PHF21A (ENSGGOG00000002304)
Orangutan	MODERN SPECIES	2	ENSPPYG00000038525	FAM180B (ENSPPYG00000040243)	NDUFS3 (ENSPPYG00000003299)	KBTBD4 (ENSPPYG00000003300)	PTPMT1 (ENSPPYG00000003301)	CELF1 (ENSPPYG00000003302)	RAPSN (ENSPPYG00000003303)	PSMC3 (ENSPPYG00000003304)	SLC39A13 (ENSPPYG00000003305)	SPI1 (ENSPPYG00000003306)	MYBPC3 (ENSPPYG00000003307)	MADD (ENSPPYG00000003308)	NR1H3 (ENSPPYG00000003309)	ACP2 (ENSPPYG00000003310)	DDB2 (ENSPPYG00000003311)	PACSIN3 (ENSPPYG00000003312) ##22	ARFGAP2 (ENSPPYG00000003313)	CSTPP1 (ENSPPYG00000003314)	LRP4 (ENSPPYG00000003315)	CKAP5 (ENSPPYG00000003316)	F2 (ENSPPYG00000003317)	ZNF408 (ENSPPYG00000003318)	ARHGAP1 (ENSPPYG00000003319)	ATG13 (ENSPPYG00000003320)	HARBI1 (ENSPPYG00000003321)	AMBRA1 (ENSPPYG00000003322)	CHRM4 (ENSPPYG00000029365)	ENSPPYG00000038515	DGKZ (ENSPPYG00000003323)	CREB3L1 (ENSPPYG00000003324)	PHF21A (ENSPPYG00000003325)
Gibbon	MODERN SPECIES	5	ENSNLEG00000014694	NDUFS3 (ENSNLEG00000028559)	KBTBD4 (ENSNLEG00000014672)	PTPMT1 (ENSNLEG00000033815)	ENSNLEG00000033020	CELF1 (ENSNLEG00000014638)	RAPSN (ENSNLEG00000014627)	PSMC3 (ENSNLEG00000014572)	ENSNLEG00000014565	SPI1 (ENSNLEG00000014555)	ENSNLEG00000014525	MADD (ENSNLEG00000014491)	NR1H3 (ENSNLEG00000014458)	ACP2 (ENSNLEG00000014425)	DDB2 (ENSNLEG00000014385)	PACSIN3 (ENSNLEG00000014344) ##22	ARFGAP2 (ENSNLEG00000014290)	CSTPP1 (ENSNLEG00000014283)	LRP4 (ENSNLEG00000014206)	CKAP5 (ENSNLEG00000014160)	F2 (ENSNLEG00000014150)	ZNF408 (ENSNLEG00000014132)	ARHGAP1 (ENSNLEG00000014095)	ATG13 (ENSNLEG00000014030)	HARBI1 (ENSNLEG00000014025)	ENSNLEG00000030310	AMBRA1 (ENSNLEG00000014020)	ENSNLEG00000014019	DGKZ (ENSNLEG00000014014)	ENSNLEG00000014012	PHF21A (ENSNLEG00000013978)
Cercopithecidae	ANCESTRAL SPECIES		ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E.s.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00910000148141	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b.l	ENSGT00940000156152	ENSGT00940000159848
Cercopithecinae	ANCESTRAL SPECIES	3	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E.s.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00910000148141	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b.l	ENSGT00940000156152	ENSGT00940000159848
Vervet Monkey	MODERN SPECIES		C1QTNF4 (ENSCSAG00000019208)	FAM180B (ENSCSAG00000005805)	NDUFS3 (ENSCSAG00000005802)	KBTBD4 (ENSCSAG00000005797)	PTPMT1 (ENSCSAG00000005789)	CELF1 (ENSCSAG00000005786)	RAPSN (ENSCSAG00000005780)	PSMC3 (ENSCSAG00000005779)	SLC39A13 (ENSCSAG00000005760)	SPI1 (ENSCSAG00000005757)	MYBPC3 (ENSCSAG00000005746)	MADD (ENSCSAG00000005705)	NR1H3 (ENSCSAG00000005699)	ACP2 (ENSCSAG00000005697)	DDB2 (ENSCSAG00000005694)	PACSIN3 (ENSCSAG00000005693) ##22	ARFGAP2 (ENSCSAG00000005691)	CSTPP1 (ENSCSAG00000005689)	ENSCSAG00000019209	LRP4 (ENSCSAG00000005688)	CKAP5 (ENSCSAG00000005686)	F2 (ENSCSAG00000005684)	ZNF408 (ENSCSAG00000005681)	ARHGAP1 (ENSCSAG00000005680)	ATG13 (ENSCSAG00000005678)	HARBI1 (ENSCSAG00000005676)	AMBRA1 (ENSCSAG00000005675)	CHRM4 (ENSCSAG00000019210)	ENSCSAG00000005668	DGKZ (ENSCSAG00000005662)	CREB3L1 (ENSCSAG00000005658)
Cercopithecinae_a	ANCESTRAL SPECIES	2	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E.s.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00910000148141	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b.l	ENSGT00940000156152	ENSGT00940000159848
Macaca	ANCESTRAL SPECIES	2	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E.s.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b.l	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Pig-tailed macaque	MODERN SPECIES	485	MTCH2 (ENSMNEG00000020815)	FAM180B (ENSMNEG00000033276)	NDUFS3 (ENSMNEG00000030290)	KBTBD4 (ENSMNEG00000036394)	PTPMT1 (ENSMNEG00000034588)	CELF1 (ENSMNEG00000022558)	RAPSN (ENSMNEG00000029367)	ENSMNEG00000044564	SLC39A13 (ENSMNEG00000040430)	SPI1 (ENSMNEG00000027877)	MYBPC3 (ENSMNEG00000029406)	MADD (ENSMNEG00000030300)	NR1H3 (ENSMNEG00000032200)	ACP2 (ENSMNEG00000031619)	DDB2 (ENSMNEG00000029423)	PACSIN3 (ENSMNEG00000041496) ##22	ARFGAP2 (ENSMNEG00000042175)	CSTPP1 (ENSMNEG00000043208)	LRP4 (ENSMNEG00000039196)	CKAP5 (ENSMNEG00000045449)	F2 (ENSMNEG00000040864)	ZNF408 (ENSMNEG00000040215)	ARHGAP1 (ENSMNEG00000044079)	ATG13 (ENSMNEG00000028546)	HARBI1 (ENSMNEG00000039470)	AMBRA1 (ENSMNEG00000041218)	CHRM4 (ENSMNEG00000019466)	MDK (ENSMNEG00000006686)	DGKZ (ENSMNEG00000042881)	CREB3L1 (ENSMNEG00000041356)	PHF21A (ENSMNEG00000041377)
Macaca_a	ANCESTRAL SPECIES	3	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E.s.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b.l	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000161627.a.a.a.a.b.a.a.a.a.b.b.a.a.b.b.a
Crab-eating macaque	MODERN SPECIES	5	FAM180B (ENSMFAG00000043005)	NDUFS3 (ENSMFAG00000031067)	PTPMT1 (ENSMFAG00000042995)	KBTBD4 (ENSMFAG00000032928)	CELF1 (ENSMFAG00000003505)	RAPSN (ENSMFAG00000037957)	PSMC3 (ENSMFAG00000003854)	SLC39A13 (ENSMFAG00000003412)	ENSMFAG00000050805	MYBPC3 (ENSMFAG00000041621)	MADD (ENSMFAG00000039619)	NR1H3 (ENSMFAG00000002014)	ACP2 (ENSMFAG00000000393)	DDB2 (ENSMFAG00000031723)	ENSMFAG00000057633	PACSIN3 (ENSMFAG00000039377) ##22	ARFGAP2 (ENSMFAG00000030043)	CSTPP1 (ENSMFAG00000038437)	LRP4 (ENSMFAG00000003482)	CKAP5 (ENSMFAG00000001378)	F2 (ENSMFAG00000031977)	ZNF408 (ENSMFAG00000036575)	ARHGAP1 (ENSMFAG00000036912)	ATG13 (ENSMFAG00000038288)	HARBI1 (ENSMFAG00000002487)	ENSMFAG00000002000	CHRM4 (ENSMFAG00000021204)	MDK (ENSMFAG00000000818)	DGKZ (ENSMFAG00000032211)	CREB3L1 (ENSMFAG00000031047)	ENSMFAG00000058269
Rhesus	MODERN SPECIES	5	C1QTNF4 (ENSMMUG00000004294)	FAM180B (ENSMMUG00000053860)	NDUFS3 (ENSMMUG00000045281)	PTPMT1 (ENSMMUG00000004286)	KBTBD4 (ENSMMUG00000004289)	CELF1 (ENSMMUG00000011657)	ENSMMUG00000064417	RAPSN (ENSMMUG00000009498)	PSMC3 (ENSMMUG00000015611)	SLC39A13 (ENSMMUG00000015607)	SPI1 (ENSMMUG00000015606)	MYBPC3 (ENSMMUG00000015604)	MADD (ENSMMUG00000015602)	NR1H3 (ENSMMUG00000015598)	ACP2 (ENSMMUG00000015597)	PACSIN3 (ENSMMUG00000006359) ##22	ARFGAP2 (ENSMMUG00000006357)	CSTPP1 (ENSMMUG00000006355)	LRP4 (ENSMMUG00000013100)	CKAP5 (ENSMMUG00000003631)	F2 (ENSMMUG00000019674)	ZNF408 (ENSMMUG00000063711)	ARHGAP1 (ENSMMUG00000007831)	ATG13 (ENSMMUG00000019672)	HARBI1 (ENSMMUG00000059160)	AMBRA1 (ENSMMUG00000011526)	CHRM4 (ENSMMUG00000039412)	MDK (ENSMMUG00000038138)	DGKZ (ENSMMUG00000021446)	CREB3L1 (ENSMMUG00000018571)	ENSMMUG00000053388
Cercopithecinae_b	ANCESTRAL SPECIES	27	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E.s.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718.m	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00910000148141	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b.l	ENSGT00940000156152	ENSGT00940000159848
Olive baboon	MODERN SPECIES	3	ENSPANG00000000111	FAM180B (ENSPANG00000000112)	NDUFS3 (ENSPANG00000001634)	KBTBD4 (ENSPANG00000017205)	ENSPANG00000007187	CELF1 (ENSPANG00000021676)	RAPSN (ENSPANG00000004124)	PSMC3 (ENSPANG00000017381)	SLC39A13 (ENSPANG00000013478)	SPI1 (ENSPANG00000004468)	MYBPC3 (ENSPANG00000016552)	DDB2 (ENSPANG00000006542)	ACP2 (ENSPANG00000001892)	NR1H3 (ENSPANG00000016658)	ENSPANG00000018411	PACSIN3 (ENSPANG00000007979) ##22	ARFGAP2 (ENSPANG00000016976)	CSTPP1 (ENSPANG00000001891)	ENSPANG00000030649	ENSPANG00000023598	HARBI1 (ENSPANG00000023007)	ATG13 (ENSPANG00000006613)	ARHGAP1 (ENSPANG00000012059)	ZNF408 (ENSPANG00000032617)	F2 (ENSPANG00000016657)	CKAP5 (ENSPANG00000013230)	AMBRA1 (ENSPANG00000017260)	MDK (ENSPANG00000020889)	DGKZ (ENSPANG00000025617)	CREB3L1 (ENSPANG00000015384)	PHF21A (ENSPANG00000016889)
Cercopithecinae_d	ANCESTRAL SPECIES	61	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E.s.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718.m	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00910000147892	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00910000148141	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b.l	ENSGT00940000156152
Drill	MODERN SPECIES	1384	ENSMLEG00000010056	FAM180B (ENSMLEG00000030769)	NDUFS3 (ENSMLEG00000042396)	KBTBD4 (ENSMLEG00000028879)	PTPMT1 (ENSMLEG00000020293)	CELF1 (ENSMLEG00000040834)	RAPSN (ENSMLEG00000037859)	ENSMLEG00000033056	SLC39A13 (ENSMLEG00000043749)	SPI1 (ENSMLEG00000004290)	MYBPC3 (ENSMLEG00000028682)	MADD (ENSMLEG00000032767)	NR1H3 (ENSMLEG00000044270)	ACP2 (ENSMLEG00000042774)	DDB2 (ENSMLEG00000032535)	PACSIN3 (ENSMLEG00000043145) ##22	ARFGAP2 (ENSMLEG00000043821)	ENSMLEG00000028689	CSTPP1 (ENSMLEG00000040490)	LRP4 (ENSMLEG00000043395)	CKAP5 (ENSMLEG00000034738)	F2 (ENSMLEG00000043758)	ZNF408 (ENSMLEG00000044029)	ENSMLEG00000042128	ARHGAP1 (ENSMLEG00000031958)	ATG13 (ENSMLEG00000027900)	HARBI1 (ENSMLEG00000026358)	ENSMLEG00000027431	AMBRA1 (ENSMLEG00000040418)	CHRM4 (ENSMLEG00000007804)	ENSMLEG00000036687
Sooty mangabey	MODERN SPECIES	193	MTCH2 (ENSCATG00000004816)	FAM180B (ENSCATG00000042552)	NDUFS3 (ENSCATG00000029573)	KBTBD4 (ENSCATG00000032867)	PTPMT1 (ENSCATG00000033306)	CELF1 (ENSCATG00000040143)	RAPSN (ENSCATG00000043406)	ENSCATG00000020806	SLC39A13 (ENSCATG00000042480)	SPI1 (ENSCATG00000041395)	MYBPC3 (ENSCATG00000033529)	MADD (ENSCATG00000019656)	NR1H3 (ENSCATG00000031838)	ACP2 (ENSCATG00000039992)	DDB2 (ENSCATG00000037043)	PACSIN3 (ENSCATG00000044836) ##22	ARFGAP2 (ENSCATG00000032091)	CSTPP1 (ENSCATG00000034976)	LRP4 (ENSCATG00000034844)	CKAP5 (ENSCATG00000037509)	F2 (ENSCATG00000038182)	ZNF408 (ENSCATG00000035814)	ENSCATG00000034262	ARHGAP1 (ENSCATG00000043789)	ATG13 (ENSCATG00000038547)	HARBI1 (ENSCATG00000043376)	AMBRA1 (ENSCATG00000037285)	CHRM4 (ENSCATG00000003262)	MDK (ENSCATG00000042264)	DGKZ (ENSCATG00000037163)	ENSCATG00000005272
Rhinopithecus	ANCESTRAL SPECIES	64	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E.s.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223.b	ENSGT00940000160394.a	ENSGT00390000007640.b.l	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Golden snub-nosed monkey	MODERN SPECIES	1568	ENSRROG00000045763	FAM180B (ENSRROG00000041406)	NDUFS3 (ENSRROG00000031411)	KBTBD4 (ENSRROG00000043819)	PTPMT1 (ENSRROG00000030092)	CELF1 (ENSRROG00000032588)	RAPSN (ENSRROG00000040174)	ENSRROG00000041915	SLC39A13 (ENSRROG00000038485)	SPI1 (ENSRROG00000045565)	MYBPC3 (ENSRROG00000043489)	MADD (ENSRROG00000041291)	NR1H3 (ENSRROG00000045605)	ACP2 (ENSRROG00000028745)	DDB2 (ENSRROG00000045383)	PACSIN3 (ENSRROG00000041480) ##22	ARFGAP2 (ENSRROG00000030954)	CSTPP1 (ENSRROG00000045631)	LRP4 (ENSRROG00000039736)	CKAP5 (ENSRROG00000039765)	F2 (ENSRROG00000038131)	ZNF408 (ENSRROG00000033904)	ARHGAP1 (ENSRROG00000037876)	ATG13 (ENSRROG00000031087)	HARBI1 (ENSRROG00000031237)	AMBRA1 (ENSRROG00000034630)	CHRM4 (ENSRROG00000024047)	ENSRROG00000040007	DGKZ (ENSRROG00000044186)	CREB3L1 (ENSRROG00000041731)	PHF21A (ENSRROG00000034376)
Black snub-nosed monkey	MODERN SPECIES	2256											MYBPC3 (ENSRBIG00000040693)	MADD (ENSRBIG00000041171)	NR1H3 (ENSRBIG00000002426)	ACP2 (ENSRBIG00000003979)	DDB2 (ENSRBIG00000036127)	PACSIN3 (ENSRBIG00000027822) ##22	ARFGAP2 (ENSRBIG00000041344)	CSTPP1 (ENSRBIG00000040070)	ENSRBIG00000043694	LRP4 (ENSRBIG00000024580)	CKAP5 (ENSRBIG00000044614)	F2 (ENSRBIG00000033898)	ZNF408 (ENSRBIG00000010662)	ARHGAP1 (ENSRBIG00000029818)	ENSRBIG00000044190	ATG13 (ENSRBIG00000044753)	HARBI1 (ENSRBIG00000010258)	ENSRBIG00000031731	RUBCNL (ENSRBIG00000034790)	LRCH1 (ENSRBIG00000037630)	ENSRBIG00000044678
Platyrrhini	ANCESTRAL SPECIES	3	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E.s.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568.s	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b.n.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Mas night monkey	MODERN SPECIES	349	MTCH2 (ENSANAG00000022984)	FAM180B (ENSANAG00000021375)	NDUFS3 (ENSANAG00000030907)	KBTBD4 (ENSANAG00000029505)	ENSANAG00000033117	CELF1 (ENSANAG00000031770)	RAPSN (ENSANAG00000022248)	ENSANAG00000037076	SLC39A13 (ENSANAG00000027448)	SPI1 (ENSANAG00000029485)	MYBPC3 (ENSANAG00000023289)	MADD (ENSANAG00000024603)	NR1H3 (ENSANAG00000037990)	ACP2 (ENSANAG00000032696)	DDB2 (ENSANAG00000036510)	PACSIN3 (ENSANAG00000030038) ##22	ARFGAP2 (ENSANAG00000031850)	ENSANAG00000026796	CSTPP1 (ENSANAG00000037882)	LRP4 (ENSANAG00000038492)	ENSANAG00000038320	CKAP5 (ENSANAG00000031236)	F2 (ENSANAG00000036904)	ZNF408 (ENSANAG00000036294)	ARHGAP1 (ENSANAG00000038289)	ATG13 (ENSANAG00000036615)	HARBI1 (ENSANAG00000038532)	AMBRA1 (ENSANAG00000037577)	CHRM4 (ENSANAG00000007361)	ENSANAG00000030861	DGKZ (ENSANAG00000023123)
Cebidae	ANCESTRAL SPECIES		ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E.s.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568.s	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b.n.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Marmoset	MODERN SPECIES	2	ENSCJAG00000039852	FAM180B (ENSCJAG00000043701)	NDUFS3 (ENSCJAG00000020194)	KBTBD4 (ENSCJAG00000020173)	PTPMT1 (ENSCJAG00000020163)	CELF1 (ENSCJAG00000020133)	RAPSN (ENSCJAG00000020129)	ENSCJAG00000020108	SPI1 (ENSCJAG00000020100)	MYBPC3 (ENSCJAG00000020066)	MADD (ENSCJAG00000020045)	NR1H3 (ENSCJAG00000020019)	ACP2 (ENSCJAG00000020008)	SLC39A13 (ENSCJAG00000020101)	DDB2 (ENSCJAG00000020000)	PACSIN3 (ENSCJAG00000019993) ##22	ENSCJAG00000019965	CSTPP1 (ENSCJAG00000019962)	LRP4 (ENSCJAG00000019944)	CKAP5 (ENSCJAG00000019878)	F2 (ENSCJAG00000019864)	ZNF408 (ENSCJAG00000019859)	ARHGAP1 (ENSCJAG00000019849)	ATG13 (ENSCJAG00000019823)	HARBI1 (ENSCJAG00000046232)	AMBRA1 (ENSCJAG00000002155)	CHRM4 (ENSCJAG00000011861)	ENSCJAG00000011852	DGKZ (ENSCJAG00000011773)	CREB3L1 (ENSCJAG00000011726)	ENSCJAG00000051468
Cebidae_a	ANCESTRAL SPECIES	10	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E.s.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568.s.a	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b.n.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Capuchin	MODERN SPECIES	58	MTCH2 (ENSCCAG00000035226)	FAM180B (ENSCCAG00000028252)	NDUFS3 (ENSCCAG00000031365)	KBTBD4 (ENSCCAG00000020004)	PTPMT1 (ENSCCAG00000034346)	CELF1 (ENSCCAG00000033487)	RAPSN (ENSCCAG00000022014)	PSMC3 (ENSCCAG00000025080)	SLC39A13 (ENSCCAG00000034535)	SPI1 (ENSCCAG00000022473)	MYBPC3 (ENSCCAG00000036859)	MADD (ENSCCAG00000036617)	NR1H3 (ENSCCAG00000024854)	ACP2 (ENSCCAG00000022333)	DDB2 (ENSCCAG00000031012)	PACSIN3 (ENSCCAG00000031265) ##22	ENSCCAG00000036464	C11orf49 (ENSCCAG00000028967)	LRP4 (ENSCCAG00000034888)	ENSCCAG00000033202	CKAP5 (ENSCCAG00000029859)	PGAM4 (ENSCCAG00000037081)	F2 (ENSCCAG00000028699)	ZNF408 (ENSCCAG00000029472)	ARHGAP1 (ENSCCAG00000005865)	ATG13 (ENSCCAG00000033415)	HARBI1 (ENSCCAG00000033538)	AMBRA1 (ENSCCAG00000036631)	CHRM4 (ENSCCAG00000016622)	ENSCCAG00000030225	DGKZ (ENSCCAG00000027153)
Bolivian squirrel monkey	MODERN SPECIES	42	C1QTNF4 (ENSSBOG00000033834)	FAM180B (ENSSBOG00000029352)	ENSSBOG00000001386	KBTBD4 (ENSSBOG00000030700)	ENSSBOG00000025269	CELF1 (ENSSBOG00000021912)	RAPSN (ENSSBOG00000022262)	ENSSBOG00000006227	SLC39A13 (ENSSBOG00000010603)	SPI1 (ENSSBOG00000022091)	MYBPC3 (ENSSBOG00000030340)	MADD (ENSSBOG00000021915)	NR1H3 (ENSSBOG00000027982)	ACP2 (ENSSBOG00000033600)	DDB2 (ENSSBOG00000030867)	PACSIN3 (ENSSBOG00000033696) ##22	ENSSBOG00000031368	CSTPP1 (ENSSBOG00000033686)	LRP4 (ENSSBOG00000032261)	ENSSBOG00000032726	ENSSBOG00000028063	CKAP5 (ENSSBOG00000031735)	F2 (ENSSBOG00000020779)	ZNF408 (ENSSBOG00000033023)	ARHGAP1 (ENSSBOG00000032970)	ATG13 (ENSSBOG00000009657)	HARBI1 (ENSSBOG00000025915)	AMBRA1 (ENSSBOG00000021917)	CHRM4 (ENSSBOG00000015294)	ENSSBOG00000025813	DGKZ (ENSSBOG00000028666)
Laurasiatheria	ANCESTRAL SPECIES	1	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00910000148141	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848
Eulipotyphla	ANCESTRAL SPECIES	468																ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935
Common shrew	MODERN SPECIES	3478																PACSIN3 (ENSSARG00000004653) ##22	ARFGAP2 (ENSSARG00000004594)	CSTPP1 (ENSSARG00000004578)
Hedgehog	MODERN SPECIES	9712																PACSIN3 (ENSEEUG00000008123) ##22
Laurasiatheria_a	ANCESTRAL SPECIES	1	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00910000148141	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848
Laurasiatheria_b	ANCESTRAL SPECIES	1	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00910000148141	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848
Carnivora	ANCESTRAL SPECIES	7	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00910000148141	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848
Caniformia	ANCESTRAL SPECIES	25	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00910000148141	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848
Canidae	ANCESTRAL SPECIES	13	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480.h	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b.e.a	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Canis_lupus	ANCESTRAL SPECIES	7	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480.h	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E.u	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b.e.a	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Dingo	MODERN SPECIES	69	C1QTNF4 (ENSCAFG00020025565)	FAM180B (ENSCAFG00020025564)	ENSCAFG00020025563	KBTBD4 (ENSCAFG00020025561)	PTPMT1 (ENSCAFG00020025558)	CELF1 (ENSCAFG00020025487)	RAPSN (ENSCAFG00020025481)	ENSCAFG00020025479	SLC39A13 (ENSCAFG00020025475)	SPI1 (ENSCAFG00020025473)	MYBPC3 (ENSCAFG00020025458)	MADD (ENSCAFG00020022385)	NR1H3 (ENSCAFG00020022209)	ACP2 (ENSCAFG00020022205)	DDB2 (ENSCAFG00020022201)	PACSIN3 (ENSCAFG00020022195) ##22	ARFGAP2 (ENSCAFG00020022191)	CSTPP1 (ENSCAFG00020022185)	LRP4 (ENSCAFG00020022152)	CKAP5 (ENSCAFG00020019305)	F2 (ENSCAFG00020019158)	ZNF408 (ENSCAFG00020019155)	ARHGAP1 (ENSCAFG00020019150)	ATG13 (ENSCAFG00020019142)	HARBI1 (ENSCAFG00020019139)	AMBRA1 (ENSCAFG00020019116)	CHRM4 (ENSCAFG00020019111)	ENSCAFG00020019107	DGKZ (ENSCAFG00020019055)	CREB3L1 (ENSCAFG00020019008)	PHF21A (ENSCAFG00020018990)
Dog	MODERN SPECIES	9	ENSCAFG00845020371	FAM180B (ENSCAFG00845020398)	ENSCAFG00845020432	KBTBD4 (ENSCAFG00845020495)	PTPMT1 (ENSCAFG00845020551)	CELF1 (ENSCAFG00845020631)	RAPSN (ENSCAFG00845020952)	ENSCAFG00845021252	SLC39A13 (ENSCAFG00845021469)	SPI1 (ENSCAFG00845021614)	MYBPC3 (ENSCAFG00845021902)	MADD (ENSCAFG00845023101)	NR1H3 (ENSCAFG00845024090)	ACP2 (ENSCAFG00845024517)	DDB2 (ENSCAFG00845024798)	PACSIN3 (ENSCAFG00845025012) ##22	ARFGAP2 (ENSCAFG00845025262)	CSTPP1 (ENSCAFG00845025843)	LRP4 (ENSCAFG00845026118)	CKAP5 (ENSCAFG00845026513)	F2 (ENSCAFG00845026955)	ZNF408 (ENSCAFG00845027019)	ARHGAP1 (ENSCAFG00845027069)	ATG13 (ENSCAFG00845027292)	HARBI1 (ENSCAFG00845027517)	AMBRA1 (ENSCAFG00845027652)	ENSCAFG00845028115	CHRM4 (ENSCAFG00845028143)	ENSCAFG00845028187	DGKZ (ENSCAFG00845028466)	CREB3L1 (ENSCAFG00845028997)
Red fox	MODERN SPECIES	49	MTCH2 (ENSVVUG00000023181)	KBTBD4 (ENSVVUG00000023426)	ENSVVUG00000023430	NDUFS3 (ENSVVUG00000023433)	PTPMT1 (ENSVVUG00000023435)	CELF1 (ENSVVUG00000023439)	RAPSN (ENSVVUG00000023449)	PSMC3 (ENSVVUG00000023452)	SLC39A13 (ENSVVUG00000023457)	SPI1 (ENSVVUG00000023463)	MYBPC3 (ENSVVUG00000023562)	MADD (ENSVVUG00000025425)	NR1H3 (ENSVVUG00000026170)	ACP2 (ENSVVUG00000026189)	DDB2 (ENSVVUG00000026319)	PACSIN3 (ENSVVUG00000026352) ##22	ARFGAP2 (ENSVVUG00000026397)	CSTPP1 (ENSVVUG00000026503)	LRP4 (ENSVVUG00000026554)	CKAP5 (ENSVVUG00000026762)	F2 (ENSVVUG00000026767)	ZNF408 (ENSVVUG00000026805)	ARHGAP1 (ENSVVUG00000026807)	ATG13 (ENSVVUG00000026821)	HARBI1 (ENSVVUG00000026967)	AMBRA1 (ENSVVUG00000026969)	CHRM4 (ENSVVUG00000026978)	MDK (ENSVVUG00000026979)	DGKZ (ENSVVUG00000026981)	CREB3L1 (ENSVVUG00000026984)	PHF21A (ENSVVUG00000026999)
Caniformia_b	ANCESTRAL SPECIES	3	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00910000148141	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848
Mustelinae	ANCESTRAL SPECIES	74	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
American mink	MODERN SPECIES	45	C1QTNF4 (ENSNVIG00000010108)	FAM180B (ENSNVIG00000010117)	NDUFS3 (ENSNVIG00000010127)	KBTB4 (ENSNVIG00000010139)	PTPMT1 (ENSNVIG00000010173)	CELF1 (ENSNVIG00000010227)	RAPSN (ENSNVIG00000010353)	PSMC3 (ENSNVIG00000010384)	SLC39A13 (ENSNVIG00000010448)	SPI1 (ENSNVIG00000010511)	MYBPC3 (ENSNVIG00000010535)	MADD (ENSNVIG00000010799)	NR1H3 (ENSNVIG00000011492)	ACP2 (ENSNVIG00000011563)	DDB2 (ENSNVIG00000011648)	PACSIN3 (ENSNVIG00000011680) ##22	ARFGAP2 (ENSNVIG00000011708)	CK049 (ENSNVIG00000011836)	LRP4 (ENSNVIG00000011939)	CKAP5 (ENSNVIG00000012011)	F2 (ENSNVIG00000012216)	ZNF408 (ENSNVIG00000012294)	ATG13 (ENSNVIG00000012327)	HARB1 (ENSNVIG00000012442)	AMBRA1 (ENSNVIG00000012478)	CHRM4 (ENSNVIG00000012697)	ENSNVIG00000012699	DGKZ (ENSNVIG00000012726)	CREB3L1 (ENSNVIG00000012921)	PHF21A (ENSNVIG00000012951)	LARGE2 (ENSNVIG00000013006)
Ferret	MODERN SPECIES	255	C1QTNF4 (ENSMPUG00000003861)	FAM180B (ENSMPUG00000003869)	NDUFS3 (ENSMPUG00000003880)	KBTBD4 (ENSMPUG00000003932)	PTPMT1 (ENSMPUG00000003938)	CELF1 (ENSMPUG00000003960)	RAPSN (ENSMPUG00000003974)	SLC39A13 (ENSMPUG00000003979)	PSMC3 (ENSMPUG00000003992)	SPI1 (ENSMPUG00000004125)	MYBPC3 (ENSMPUG00000004128)	MADD (ENSMPUG00000004775)	NR1H3 (ENSMPUG00000004787)	ACP2 (ENSMPUG00000004871)	DDB2 (ENSMPUG00000004880)	PACSIN3 (ENSMPUG00000004892) ##22	ARFGAP2 (ENSMPUG00000005012)	CSTPP1 (ENSMPUG00000005029)	LRP4 (ENSMPUG00000005034)	CKAP5 (ENSMPUG00000005279)	F2 (ENSMPUG00000005310)	ZNF408 (ENSMPUG00000005490)	ARHGAP1 (ENSMPUG00000005499)	ATG13 (ENSMPUG00000005512)	HARBI1 (ENSMPUG00000005540)	AMBRA1 (ENSMPUG00000005552)	CHRM4 (ENSMPUG00000018440)	MDK (ENSMPUG00000005575)	DGKZ (ENSMPUG00000005616)	CREB3L1 (ENSMPUG00000005639)	PHF21A (ENSMPUG00000005646)
Ursidae	ANCESTRAL SPECIES	2	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00910000148141	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848
Ursus	ANCESTRAL SPECIES	85	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00910000148141	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848
Polar bear	MODERN SPECIES	229	MTCH2 (ENSUMAG00000009168)	FAM180B (ENSUMAG00000009202)	NDUFS3 (ENSUMAG00000009205)	KBTBD4 (ENSUMAG00000009210)	PTPMT1 (ENSUMAG00000009215)	CELF1 (ENSUMAG00000009218)	RAPSN (ENSUMAG00000009220)	PSMC3 (ENSUMAG00000009232)	SLC39A13 (ENSUMAG00000009241)	SPI1 (ENSUMAG00000009255)	MYBPC3 (ENSUMAG00000009303)	MADD (ENSUMAG00000009893)	NR1H3 (ENSUMAG00000014293)	ACP2 (ENSUMAG00000014297)	DDB2 (ENSUMAG00000014299)	PACSIN3 (ENSUMAG00000014303) ##22	ARFGAP2 (ENSUMAG00000014307)	CSTPP1 (ENSUMAG00000014321)	LRP4 (ENSUMAG00000014330)	CKAP5 (ENSUMAG00000014345)	F2 (ENSUMAG00000014382)	ZNF408 (ENSUMAG00000014405)	ARHGAP1 (ENSUMAG00000014408)	ATG13 (ENSUMAG00000014415)	HARBI1 (ENSUMAG00000014427)	AMBRA1 (ENSUMAG00000014438)	MDK (ENSUMAG00000014474)	DGKZ (ENSUMAG00000014597)	CREB3L1 (ENSUMAG00000015322)	PHF21A (ENSUMAG00000015340)	LARGE2 (ENSUMAG00000015352)
American black bear	MODERN SPECIES	4876													NR1H3 (ENSUAMG00000002590)	ACP2 (ENSUAMG00000002864)	DDB2 (ENSUAMG00000003455)	PACSIN3 (ENSUAMG00000003457) ##22	ARFGAP2 (ENSUAMG00000003461)	CSTPP1 (ENSUAMG00000003474)
Giant Panda	MODERN SPECIES	7	ENSAMEG00000007688	FAM180B (ENSAMEG00000007683)	NDUFS3 (ENSAMEG00000007649)	KBTBD4 (ENSAMEG00000007634)	PTPMT1 (ENSAMEG00000007624)	CELF1 (ENSAMEG00000007596)	RAPSN (ENSAMEG00000007575)	PSMC3 (ENSAMEG00000007538)	SLC39A13 (ENSAMEG00000007505)	SPI1 (ENSAMEG00000030284)	MYBPC3 (ENSAMEG00000007362)	MADD (ENSAMEG00000007321)	NR1H3 (ENSAMEG00000007298)	ACP2 (ENSAMEG00000007273)	DDB2 (ENSAMEG00000007255)	PACSIN3 (ENSAMEG00000007225) ##22	ARFGAP2 (ENSAMEG00000007175)	CSTPP1 (ENSAMEG00000007146)	LRP4 (ENSAMEG00000007069)	CKAP5 (ENSAMEG00000006979)	F2 (ENSAMEG00000006910)	ZNF408 (ENSAMEG00000006904)	ARHGAP1 (ENSAMEG00000006844)	ATG13 (ENSAMEG00000006798)	HARBI1 (ENSAMEG00000006795)	ENSAMEG00000023608	AMBRA1 (ENSAMEG00000006762)	CHRM4 (ENSAMEG00000020060)	MDK (ENSAMEG00000006752)	DGKZ (ENSAMEG00000006657)	CREB3L1 (ENSAMEG00000006633)
Felidae	ANCESTRAL SPECIES		ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00500000045038.m.a.a	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848
Panthera	ANCESTRAL SPECIES	13	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00500000045038.m.a.a	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848
Panthera_a	ANCESTRAL SPECIES	20	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00500000045038.m.a.a	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848
leopard	MODERN SPECIES	58	ENSPPRG00000024156	FAM180B (ENSPPRG00000024070)	NDUFS3 (ENSPPRG00000023580)	KBTBD4 (ENSPPRG00000022635)	PTPMT1 (ENSPPRG00000000430)	CELF1 (ENSPPRG00000002376)	RAPSN (ENSPPRG00000004770)	PSMC3 (ENSPPRG00000006737)	SLC39A13 (ENSPPRG00000009592)	SPI1 (ENSPPRG00000010085)	MYBPC3 (ENSPPRG00000024064)	MADD (ENSPPRG00000000412)	NR1H3 (ENSPPRG00000002008)	ACP2 (ENSPPRG00000004019)	DDB2 (ENSPPRG00000005739)	PACSIN3 (ENSPPRG00000005994) ##22	ARFGAP2 (ENSPPRG00000007483)	CSTPP1 (ENSPPRG00000008841)	LRP4 (ENSPPRG00000009649)	CKAP5 (ENSPPRG00000014495)	F2 (ENSPPRG00000015996)	ENSPPRG00000021564	ZNF408 (ENSPPRG00000016866)	ARHGAP1 (ENSPPRG00000017517)	ATG13 (ENSPPRG00000024435)	HARBI1 (ENSPPRG00000024315)	AMBRA1 (ENSPPRG00000000398)	CHRM4 (ENSPPRG00000021661)	MDK (ENSPPRG00000001591)	DGKZ (ENSPPRG00000006446)	CREB3L1 (ENSPPRG00000006852)
lion	MODERN SPECIES	10	ENSPLOG00000007716	FAM180B (ENSPLOG00000007697)	NDUFS3 (ENSPLOG00000007679)	KBTBD4 (ENSPLOG00000007653)	ENSPLOG00000007621	CELF1 (ENSPLOG00000007570)	RAPSN (ENSPLOG00000007427)	PSMC3 (ENSPLOG00000007292)	SLC39A13 (ENSPLOG00000007161)	SPI1 (ENSPLOG00000007099)	MYBPC3 (ENSPLOG00000006845)	MADD (ENSPLOG00000006666)	NR1H3 (ENSPLOG00000006535)	ACP2 (ENSPLOG00000006391)	DDB2 (ENSPLOG00000006264)	PACSIN3 (ENSPLOG00000006189) ##22	ARFGAP2 (ENSPLOG00000006001)	CSTPP1 (ENSPLOG00000005860)	LRP4 (ENSPLOG00000005745)	CKAP5 (ENSPLOG00000005671)	F2 (ENSPLOG00000005576)	ENSPLOG00000005532	ZNF408 (ENSPLOG00000005509)	ARHGAP1 (ENSPLOG00000005477)	ATG13 (ENSPLOG00000005426)	HARBI1 (ENSPLOG00000005373)	ENSPLOG00000005359	AMBRA1 (ENSPLOG00000005299)	CHRM4 (ENSPLOG00000005269)	MDK (ENSPLOG00000005259)	DGKZ (ENSPLOG00000005116)
Tiger	MODERN SPECIES	168	MTCH2 (ENSPTIG00000007190)	FAM180B (ENSPTIG00000007108)	NDUFS3 (ENSPTIG00000006928)	KBTBD4 (ENSPTIG00000006244)	PTPMT1 (ENSPTIG00000005838)	CELF1 (ENSPTIG00000003974)	RAPSN (ENSPTIG00000000869)	PSMC3 (ENSPTIG00000021263)	SLC39A13 (ENSPTIG00000021132)	SPI1 (ENSPTIG00000020982)	MYBPC3 (ENSPTIG00000020596)	MADD (ENSPTIG00000018995)	NR1H3 (ENSPTIG00000018538)	ACP2 (ENSPTIG00000018036)	DDB2 (ENSPTIG00000017739)	PACSIN3 (ENSPTIG00000017528) ##22	ARFGAP2 (ENSPTIG00000017136)	CSTPP1 (ENSPTIG00000016931)	LRP4 (ENSPTIG00000016819)	CKAP5 (ENSPTIG00000015717)	F2 (ENSPTIG00000015545)	ZNF408 (ENSPTIG00000015467)	ARHGAP1 (ENSPTIG00000014598)	ATG13 (ENSPTIG00000014275)	HARBI1 (ENSPTIG00000014054)	AMBRA1 (ENSPTIG00000013363)	CHRM4 (ENSPTIG00000009949)	MDK (ENSPTIG00000012940)	DGKZ (ENSPTIG00000012708)	CREB3L1 (ENSPTIG00000012554)	PHF21A (ENSPTIG00000012098)
Cat	MODERN SPECIES	241	C1QTNF4 (ENSFCAG00000035523)	FAM180B (ENSFCAG00000009508)	NDUFS3 (ENSFCAG00000040734)	KBTBD4 (ENSFCAG00000009499)	ENSFCAG00000042609	CELF1 (ENSFCAG00000002535)	RAPSN (ENSFCAG00000002534)	PSMC3 (ENSFCAG00000002533)	SLC39A13 (ENSFCAG00000002532)	SPI1 (ENSFCAG00000002531)	MYBPC3 (ENSFCAG00000002530)	MADD (ENSFCAG00000002529)	NR1H3 (ENSFCAG00000002528)	ACP2 (ENSFCAG00000002527)	DDB2 (ENSFCAG00000025016)	PACSIN3 (ENSFCAG00000012631) ##22	ARFGAP2 (ENSFCAG00000002525)	CSTPP1 (ENSFCAG00000002524)	LRP4 (ENSFCAG00000002523)	CKAP5 (ENSFCAG00000013640)	F2 (ENSFCAG00000029088)	ENSFCAG00000041074	ZNF408 (ENSFCAG00000029105)	ARHGAP1 (ENSFCAG00000013638)	ATG13 (ENSFCAG00000013637)	HARBI1 (ENSFCAG00000029910)	AMBRA1 (ENSFCAG00000013635)	CHRM4 (ENSFCAG00000024780)	MDK (ENSFCAG00000023547)	DGKZ (ENSFCAG00000013634)	CREB3L1 (ENSFCAG00000018794)
Laurasiatheria_c	ANCESTRAL SPECIES	9	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Equus	ANCESTRAL SPECIES	56	ENSGT00390000000020.b	ENSGT00940000158775	ENSGT00940000154479.a	ENSGT00390000017480.e	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Horse	MODERN SPECIES	3	AGBL2 (ENSECAG00000018720)	MTCH2 (ENSECAG00000014198)	NDUFS3 (ENSECAG00000013454)	KBTBD4 (ENSECAG00000013258)	PTPMT1 (ENSECAG00000012816)	CELF1 (ENSECAG00000007741)	RAPSN (ENSECAG00000003289)	PSMC3 (ENSECAG00000024786)	SLC39A13 (ENSECAG00000024590)	SPI1 (ENSECAG00000024457)	MYBPC3 (ENSECAG00000024318)	MADD (ENSECAG00000016022)	NR1H3 (ENSECAG00000015726)	ACP2 (ENSECAG00000013128)	DDB2 (ENSECAG00000008711)	PACSIN3 (ENSECAG00000025103) ##22	ARFGAP2 (ENSECAG00000024744)	ENSECAG00000051919	CSTPP1 (ENSECAG00000024739)	LRP4 (ENSECAG00000023663)	CKAP5 (ENSECAG00000015563)	F2 (ENSECAG00000011321)	ZNF408 (ENSECAG00000010878)	ARHGAP1 (ENSECAG00000009844)	ATG13 (ENSECAG00000024606)	HARBI1 (ENSECAG00000024452)	AMBRA1 (ENSECAG00000023789)	CHRM4 (ENSECAG00000023751)	ENSECAG00000029071	DGKZ (ENSECAG00000018796)	CREB3L1 (ENSECAG00000018306)
Donkey	MODERN SPECIES	8	MTCH2 (ENSEASG00005010837)	FAM180B (ENSEASG00005035695)	ENSEASG00005010834	KBTBD4 (ENSEASG00005031390)	PTPMT1 (ENSEASG00005037371)	CELF1 (ENSEASG00005010831)	RAPSN (ENSEASG00005010830)	PSMC3 (ENSEASG00005010810)	SLC39A13 (ENSEASG00005010790)	SPI1 (ENSEASG00005010780)	MYBPC3 (ENSEASG00005010750)	MADD (ENSEASG00005002251)	NR1H3 (ENSEASG00005001479)	ACP2 (ENSEASG00005001161)	DDB2 (ENSEASG00005001051)	PACSIN3 (ENSEASG00005000908) ##22	ARFGAP2 (ENSEASG00005000180)	CSTPP1 (ENSEASG00005017823)	LRP4 (ENSEASG00005017791)	CKAP5 (ENSEASG00005015601)	F2 (ENSEASG00005015463)	ZNF408 (ENSEASG00005015461)	ARHGAP1 (ENSEASG00005015450)	ATG13 (ENSEASG00005015246)	HARBI1 (ENSEASG00005015208)	AMBRA1 (ENSEASG00005015004)	CHRM4 (ENSEASG00005029426)	MDK (ENSEASG00005029065)	DGKZ (ENSEASG00005014964)	CREB3L1 (ENSEASG00005014953)	PHF21A (ENSEASG00005014943)
Chiroptera	ANCESTRAL SPECIES	5	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065.f	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Megabat	MODERN SPECIES	2434																PACSIN3 (ENSPVAG00000015811) ##22	ARFGAP2 (ENSPVAG00000015809)	CSTPP1 (ENSPVAG00000015808)	LRP4 (ENSPVAG00000015807)	CKAP5 (ENSPVAG00000015800)	F2 (ENSPVAG00000015792)	ZNF408 (ENSPVAG00000015791)	ARHGAP1 (ENSPVAG00000015787)	ATG13 (ENSPVAG00000015785)
Microchiroptera	ANCESTRAL SPECIES	31	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065.f	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Greater horseshoe bat	MODERN SPECIES	2	ENSRFEG00010011954	FAM180B (ENSRFEG00010011984)	NDUFS3 (ENSRFEG00010012038)	KBTBD4 (ENSRFEG00010012114)	PTPMT1 (ENSRFEG00010012248)	CELF1 (ENSRFEG00010012300)	RAPSN (ENSRFEG00010012492)	PSMC3 (ENSRFEG00010012635)	SLC39A13 (ENSRFEG00010012772)	SPI1 (ENSRFEG00010012946)	MYBPC3 (ENSRFEG00010013106)	MADD (ENSRFEG00010014628)	NR1H3 (ENSRFEG00010015025)	ACP2 (ENSRFEG00010015250)	DDB2 (ENSRFEG00010015496)	PACSIN3 (ENSRFEG00010000575) ##22	ARFGAP2 (ENSRFEG00010000701)	CSTPP1 (ENSRFEG00010000992)	LRP4 (ENSRFEG00010001046)	CKAP5 (ENSRFEG00010001142)	F2 (ENSRFEG00010001400)	ZNF408 (ENSRFEG00010001453)	ARHGAP1 (ENSRFEG00010001486)	ATG13 (ENSRFEG00010001557)	HARBI1 (ENSRFEG00010001682)	AMBRA1 (ENSRFEG00010001788)	CHRM4 (ENSRFEG00010001975)	MDK (ENSRFEG00010001996)	DGKZ (ENSRFEG00010002446)	CREB3L1 (ENSRFEG00010003317)	PHF21A (ENSRFEG00010003386)
Microbat	MODERN SPECIES	1034	FNBP4 (ENSMLUG00000011388)	MTCH2 (ENSMLUG00000016431)	FAM180B (ENSMLUG00000016658)	NDUFS3 (ENSMLUG00000016649)	KBTBD4 (ENSMLUG00000006745)	ENSMLUG00000024269	CELF1 (ENSMLUG00000016631)	ENSMLUG00000016626	PSMC3 (ENSMLUG00000016615)	SLC39A13 (ENSMLUG00000016608)	MYBPC3 (ENSMLUG00000017650)	MADD (ENSMLUG00000017647)	NR1H3 (ENSMLUG00000017646)	ACP2 (ENSMLUG00000017644)	DDB2 (ENSMLUG00000017642)	PACSIN3 (ENSMLUG00000017640) ##22	ARFGAP2 (ENSMLUG00000017637)	CSTPP1 (ENSMLUG00000017636)	LRP4 (ENSMLUG00000017635)	CKAP5 (ENSMLUG00000017633)	F2 (ENSMLUG00000017631)	ZNF408 (ENSMLUG00000017629)	ARHGAP1 (ENSMLUG00000017628)	ATG13 (ENSMLUG00000017626)	HARBI1 (ENSMLUG00000011485)	AMBRA1 (ENSMLUG00000009880)	CHRM4 (ENSMLUG00000025622)	MDK (ENSMLUG00000022787)	DGKZ (ENSMLUG00000009836)	CREB3L1 (ENSMLUG00000009820)	PHF21A (ENSMLUG00000014773)
Artiodactyla	ANCESTRAL SPECIES	1	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Suina	ANCESTRAL SPECIES	34	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Chacoan peccary	MODERN SPECIES	919	FAM180B (ENSCWAG00000011934)	NDUFS3 (ENSCWAG00000011975)	KBTBD4 (ENSCWAG00000012134)	PTPMT1 (ENSCWAG00000012300)	CELF1 (ENSCWAG00000012400)	RAPSN (ENSCWAG00000012571)	PSMC3 (ENSCWAG00000012918)	SLC39A13 (ENSCWAG00000013013)	ENSCWAG00000013126	SPI1 (ENSCWAG00000013165)	MYBPC3 (ENSCWAG00000013297)	MADD (ENSCWAG00000014593)	NR1H3 (ENSCWAG00000020217)	ACP2 (ENSCWAG00000020271)	DDB2 (ENSCWAG00000020312)	PACSIN3 (ENSCWAG00000020363) ##22	ARFGAP2 (ENSCWAG00000020384)	CSTPP1 (ENSCWAG00000020423)	ENSCWAG00000020438	LRP4 (ENSCWAG00000020453)	CKAP5 (ENSCWAG00000020545)	F2 (ENSCWAG00000020586)	ZNF408 (ENSCWAG00000020629)	ARHGAP1 (ENSCWAG00000020638)	ATG13 (ENSCWAG00000020671)	HARBI1 (ENSCWAG00000020778)	AMBRA1 (ENSCWAG00000020799)	CHRM4 (ENSCWAG00000020869)	MDK (ENSCWAG00000020882)	DGKZ (ENSCWAG00000020966)	CREB3L1 (ENSCWAG00000021208)
Pig	MODERN SPECIES	10	ENSSSCG00000013232	C1QTNF4 (ENSSSCG00000013231)	FAM180B (ENSSSCG00000013230)	NDUFS3 (ENSSSCG00000032081)	KBTBD4 (ENSSSCG00000013227)	PTPMT1 (ENSSSCG00000013226)	CELF1 (ENSSSCG00000013233)	PSMC3 (ENSSSCG00000013239)	SLC39A13 (ENSSSCG00000013238)	SPI1 (ENSSSCG00000013237)	MYBPC3 (ENSSSCG00000013236)	MADD (ENSSSCG00000013235)	NR1H3 (ENSSSCG00000013241)	ACP2 (ENSSSCG00000013242)	DDB2 (ENSSSCG00000013243)	PACSIN3 (ENSSSCG00000013244) ##22	ARFGAP2 (ENSSSCG00000013245)	CSTPP1 (ENSSSCG00000013246)	LRP4 (ENSSSCG00000013248)	CKAP5 (ENSSSCG00000013249)	ENSSSCG00000048195	F2 (ENSSSCG00000013252)	ZNF408 (ENSSSCG00000023097)	ARHGAP1 (ENSSSCG00000013256)	ATG13 (ENSSSCG00000013257)	HARBI1 (ENSSSCG00000013258)	AMBRA1 (ENSSSCG00000013262)	CHRM4 (ENSSSCG00000013261)	MDK (ENSSSCG00000013260)	DGKZ (ENSSSCG00000013259)	CREB3L1 (ENSSSCG00000013263)
Artiodactyla_a	ANCESTRAL SPECIES	1	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Camelidae	ANCESTRAL SPECIES	25	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Arabian camel	MODERN SPECIES	1	ENSCDRG00005001659	FAM180B (ENSCDRG00005001672)	NDUFS3 (ENSCDRG00005001699)	KBTBD4 (ENSCDRG00005001788)	PTPMT1 (ENSCDRG00005001832)	CELF1 (ENSCDRG00005001849)	RAPSN (ENSCDRG00005001888)	PSMC3 (ENSCDRG00005001939)	SLC39A13 (ENSCDRG00005001964)	SPI1 (ENSCDRG00005001988)	MYBPC3 (ENSCDRG00005002015)	MADD (ENSCDRG00005002594)	NR1H3 (ENSCDRG00005006795)	ACP2 (ENSCDRG00005006623)	DDB2 (ENSCDRG00005007029)	PACSIN3 (ENSCDRG00005007398) ##22	ARFGAP2 (ENSCDRG00005007474)	CSTPP1 (ENSCDRG00005008190)	ENSCDRG00005008443	LRP4 (ENSCDRG00005008476)	CKAP5 (ENSCDRG00005008832)	F2 (ENSCDRG00005009091)	ZNF408 (ENSCDRG00005009244)	ARHGAP1 (ENSCDRG00005009320)	ATG13 (ENSCDRG00005009422)	HARBI1 (ENSCDRG00005009768)	AMBRA1 (ENSCDRG00005009861)	CHRM4 (ENSCDRG00005010302)	MDK (ENSCDRG00005010345)	DGKZ (ENSCDRG00005010475)	CREB3L1 (ENSCDRG00005011173)
Alpaca	MODERN SPECIES	3542												ENSVPAG00000011844	NR1H3 (ENSVPAG00000011840)	ENSVPAG00000011836	DDB2 (ENSVPAG00000011835)	PACSIN3 (ENSVPAG00000011833) ##22	ARFGAP2 (ENSVPAG00000011832)	ENSVPAG00000011831	LRP4 (ENSVPAG00000011829)	CKAP5 (ENSVPAG00000011827)	ZNF408 (ENSVPAG00000011825)	ATG13 (ENSVPAG00000011823)	HARBI1 (ENSVPAG00000011821)	AMBRA1 (ENSVPAG00000011817)
Artiodactyla_b	ANCESTRAL SPECIES	1	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Pecora	ANCESTRAL SPECIES	7	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Yarkand deer	MODERN SPECIES		ENSCHYG00000003424	FAM180B (ENSCHYG00000003417)	NDUFS3 (ENSCHYG00000003399)	KBTBD4 (ENSCHYG00000003377)	PTPMT1 (ENSCHYG00000003361)	ENSCHYG00000003356	CELF1 (ENSCHYG00000003333)	RAPSN (ENSCHYG00000003218)	PSMC3 (ENSCHYG00000003185)	SLC39A13 (ENSCHYG00000003145)	SPI1 (ENSCHYG00000003123)	MADD (ENSCHYG00000002609)	NR1H3 (ENSCHYG00000002538)	ACP2 (ENSCHYG00000002437)	DDB2 (ENSCHYG00000002377)	PACSIN3 (ENSCHYG00000002328) ##22	ARFGAP2 (ENSCHYG00000002254)	CSTPP1 (ENSCHYG00000002208)	LRP4 (ENSCHYG00000002074)	CKAP5 (ENSCHYG00000001967)	F2 (ENSCHYG00000001885)	ZNF408 (ENSCHYG00000001850)	ARHGAP1 (ENSCHYG00000001791)	ATG13 (ENSCHYG00000001705)	HARBI1 (ENSCHYG00000001684)	AMBRA1 (ENSCHYG00000001540)	CHRM4 (ENSCHYG00000001502)	MDK (ENSCHYG00000001474)	DGKZ (ENSCHYG00000001154)	CREB3L1 (ENSCHYG00000001030)	PHF21A (ENSCHYG00000000954)
Percora_a	ANCESTRAL SPECIES	6	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Siberian musk deer	MODERN SPECIES	118	NDUFS3 (ENSMMSG00000002602)	KBTBD4 (ENSMMSG00000002638)	PTPMT1 (ENSMMSG00000002650)	CELF1 (ENSMMSG00000005936)	ENSMMSG00000006034	RAPSN (ENSMMSG00000006063)	PSMC3 (ENSMMSG00000006116)	SLC39A13 (ENSMMSG00000006163)	SPI1 (ENSMMSG00000006220)	MYBPC3 (ENSMMSG00000006254)	MADD (ENSMMSG00000006433)	NR1H3 (ENSMMSG00000006800)	ACP2 (ENSMMSG00000006877)	DDB2 (ENSMMSG00000007023)	ENSMMSG00000007128	PACSIN3 (ENSMMSG00000007142) ##22	ARFGAP2 (ENSMMSG00000007196)	CSTPP1 (ENSMMSG00000007479)	LRP4 (ENSMMSG00000007545)	CKAP5 (ENSMMSG00000007823)	F2 (ENSMMSG00000008000)	ZNF408 (ENSMMSG00000008033)	ARHGAP1 (ENSMMSG00000008062)	ATG13 (ENSMMSG00000008155)	HARBI1 (ENSMMSG00000008321)	AMBRA1 (ENSMMSG00000008353)	CHRM4 (ENSMMSG00000008482)	MDK (ENSMMSG00000008497)	DGKZ (ENSMMSG00000008653)	CREB3L1 (ENSMMSG00000009753)	PHF21A (ENSMMSG00000009796)
Bovidae	ANCESTRAL SPECIES	6	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Caprinae	ANCESTRAL SPECIES	6	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Goat	MODERN SPECIES	6	C1QTNF4 (ENSCHIG00000003743)	FAM180B (ENSCHIG00000011395)	NDUFS3 (ENSCHIG00000017760)	KBTBD4 (ENSCHIG00000016297)	PTPMT1 (ENSCHIG00000015788)	CELF1 (ENSCHIG00000024582)	RAPSN (ENSCHIG00000015950)	PSMC3 (ENSCHIG00000010249)	SLC39A13 (ENSCHIG00000018746)	SPI1 (ENSCHIG00000019747)	MYBPC3 (ENSCHIG00000021976)	MADD (ENSCHIG00000003140)	NR1H3 (ENSCHIG00000013751)	ACP2 (ENSCHIG00000017023)	DDB2 (ENSCHIG00000021645)	PACSIN3 (ENSCHIG00000007034) ##22	ARFGAP2 (ENSCHIG00000003758)	CSTPP1 (ENSCHIG00000013768)	LRP4 (ENSCHIG00000024661)	CKAP5 (ENSCHIG00000018334)	ENSCHIG00000009743	F2 (ENSCHIG00000024270)	ZNF408 (ENSCHIG00000025346)	ARHGAP1 (ENSCHIG00000022137)	ATG13 (ENSCHIG00000014614)	HARBI1 (ENSCHIG00000014327)	AMBRA1 (ENSCHIG00000016854)	CHRM4 (ENSCHIG00000006372)	MDK (ENSCHIG00000020969)	DGKZ (ENSCHIG00000018020)	CREB3L1 (ENSCHIG00000008753)
Rambouillet Sheep	MODERN SPECIES	6	ENSOARG00020014813	FAM180B (ENSOARG00020014767)	NDUFS3 (ENSOARG00020014698)	ENSOARG00020014554	ENSOARG00020014495	CELF1 (ENSOARG00020014203)	RAPSN (ENSOARG00020013803)	PSMC3 (ENSOARG00020013548)	SLC39A13 (ENSOARG00020013213)	SPI1 (ENSOARG00020013137)	MYBPC3 (ENSOARG00020012776)	MADD (ENSOARG00020011512)	NR1H3 (ENSOARG00020011361)	ACP2 (ENSOARG00020010726)	DDB2 (ENSOARG00020010497)	PACSIN3 (ENSOARG00020010393) ##22	ARFGAP2 (ENSOARG00020010021)	CSTPP1 (ENSOARG00020023714)	LRP4 (ENSOARG00020023551)	CKAP5 (ENSOARG00020023388)	F2 (ENSOARG00020023298)	ZNF408 (ENSOARG00020023273)	ARHGAP1 (ENSOARG00020023238)	ATG13 (ENSOARG00020023093)	HARBI1 (ENSOARG00020023065)	AMBRA1 (ENSOARG00020022829)	CHRM4 (ENSOARG00020022796)	MDK (ENSOARG00020022725)	DGKZ (ENSOARG00020021820)	CREB3L1 (ENSOARG00020021730)	PHF21A (ENSOARG00020021567)
Bovinae	ANCESTRAL SPECIES	26	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b.d.a	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Bos	ANCESTRAL SPECIES	25	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b.d.a	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Bos_a	ANCESTRAL SPECIES	36	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00940000155097.e.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b.d.a	ENSGT00940000156152	ENSGT00940000159848
Wild yak	MODERN SPECIES	1047		ENSBMUG00000024672	NDUFS3 (ENSBMUG00000024660)	KBTBD4 (ENSBMUG00000024643)	ENSBMUG00000024626	CELF1 (ENSBMUG00000024594)	RAPSN (ENSBMUG00000024536)	PSMC3 (ENSBMUG00000024510)	SLC39A13 (ENSBMUG00000024475)	SPI1 (ENSBMUG00000024426)	MADD (ENSBMUG00000024292)	MYBPC3 (ENSBMUG00000023919)	NR1H3 (ENSBMUG00000023834)	ACP2 (ENSBMUG00000023770)	DDB2 (ENSBMUG00000023687)	PACSIN3 (ENSBMUG00000023616) ##22	ARFGAP2 (ENSBMUG00000023585)	CSTPP1 (ENSBMUG00000023500)	LRP4 (ENSBMUG00000023473)	CKAP5 (ENSBMUG00000023430)	F2 (ENSBMUG00000023372)	ZNF408 (ENSBMUG00000023350)	ARHGAP1 (ENSBMUG00000023337)	ATG13 (ENSBMUG00000023285)	HARBI1 (ENSBMUG00000023163)	ENSBMUG00000023155	AMBRA1 (ENSBMUG00000023114)	CHRM4 (ENSBMUG00000022974)	ENSBMUG00000022959	DGKZ (ENSBMUG00000022918)	CREB3L1 (ENSBMUG00000022860)
Domestic yak	MODERN SPECIES	4	ENSBGRG00000019699	FAM180B (ENSBGRG00000019645)	NDUFS3 (ENSBGRG00000019602)	KBTBD4 (ENSBGRG00000019526)	ENSBGRG00000019424	CELF1 (ENSBGRG00000019052)	RAPSN (ENSBGRG00000018674)	PSMC3 (ENSBGRG00000018446)	SLC39A13 (ENSBGRG00000018326)	SPI1 (ENSBGRG00000018200)	MYBPC3 (ENSBGRG00000017872)	MADD (ENSBGRG00000017261)	NR1H3 (ENSBGRG00000016958)	ACP2 (ENSBGRG00000016478)	DDB2 (ENSBGRG00000016037)	PACSIN3 (ENSBGRG00000015878) ##22	ARFGAP2 (ENSBGRG00000015155)	CSTPP1 (ENSBGRG00000014751)	LRP4 (ENSBGRG00000014275)	CKAP5 (ENSBGRG00000013953)	F2 (ENSBGRG00000013793)	ZNF408 (ENSBGRG00000013630)	ARHGAP1 (ENSBGRG00000013511)	ATG13 (ENSBGRG00000013263)	HARBI1 (ENSBGRG00000013222)	TAF9 (ENSBGRG00000013181)	AMBRA1 (ENSBGRG00000012979)	CHRM4 (ENSBGRG00000012936)	ENSBGRG00000012888	DGKZ (ENSBGRG00000011064)	CREB3L1 (ENSBGRG00000010789)
Bos_b	ANCESTRAL SPECIES	12	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b.d.a	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Cow	MODERN SPECIES	6	MTCH2 (ENSBTAG00000018742)	FAM180B (ENSBTAG00000055123)	NDUFS3 (ENSBTAG00000018483)	KBTBD4 (ENSBTAG00000018482)	PTPMT1 (ENSBTAG00000018479)	CELF1 (ENSBTAG00000002520)	RAPSN (ENSBTAG00000021745)	PSMC3 (ENSBTAG00000021744)	SLC39A13 (ENSBTAG00000019436)	SPI1 (ENSBTAG00000021709)	MYBPC3 (ENSBTAG00000021707)	MADD (ENSBTAG00000021700)	NR1H3 (ENSBTAG00000010681)	ACP2 (ENSBTAG00000021002)	DDB2 (ENSBTAG00000020999)	PACSIN3 (ENSBTAG00000009576) ##22	ARFGAP2 (ENSBTAG00000009574)	CSTPP1 (ENSBTAG00000009573)	LRP4 (ENSBTAG00000008429)	CKAP5 (ENSBTAG00000004448)	F2 (ENSBTAG00000007148)	ZNF408 (ENSBTAG00000027557)	ARHGAP1 (ENSBTAG00000016501)	ATG13 (ENSBTAG00000017325)	HARBI1 (ENSBTAG00000004639)	AMBRA1 (ENSBTAG00000004282)	CHRM4 (ENSBTAG00000033699)	MDK (ENSBTAG00000007740)	DGKZ (ENSBTAG00000013636)	CREB3L1 (ENSBTAG00000006143)	PHF21A (ENSBTAG00000009611)
Hybrid Bos Indicus	MODERN SPECIES	6	MTCH2 (ENSBIXG00005003456)	ENSBIXG00005020389	FAM180B (ENSBIXG00005020374)	KBTBD4 (ENSBIXG00005020354)	PTPMT1 (ENSBIXG00005007208)	CELF1 (ENSBIXG00005020290)	RAPSN (ENSBIXG00005003352)	PSMC3 (ENSBIXG00005020171)	SLC39A13 (ENSBIXG00005003304)	SPI1 (ENSBIXG00005020034)	MYBPC3 (ENSBIXG00005002636)	MADD (ENSBIXG00005003241)	NR1H3 (ENSBIXG00005019630)	ACP2 (ENSBIXG00005019552)	DDB2 (ENSBIXG00005019438)	PACSIN3 (ENSBIXG00005019375) ##22	ARFGAP2 (ENSBIXG00005019318)	CSTPP1 (ENSBIXG00005019202)	LRP4 (ENSBIXG00005019152)	CKAP5 (ENSBIXG00005018988)	F2 (ENSBIXG00005018882)	ZNF408 (ENSBIXG00005018816)	ARHGAP1 (ENSBIXG00005003058)	ATG13 (ENSBIXG00005003045)	HARBI1 (ENSBIXG00005018637)	AMBRA1 (ENSBIXG00005007656)	CHRM4 (ENSBIXG00005018467)	ENSBIXG00005018454	DGKZ (ENSBIXG00005018295)	CREB3L1 (ENSBIXG00005002939)	PHF21A (ENSBIXG00005018097)
American bison	MODERN SPECIES	3100	MTCH2 (ENSBBBG00000002309)	FAM180B (ENSBBBG00000002312)	NDUFS3 (ENSBBBG00000012284)	KBTBD4 (ENSBBBG00000012295)	PTPMT1 (ENSBBBG00000001931)	CELF1 (ENSBBBG00000012337)	RAPSN (ENSBBBG00000002335)	PSMC3 (ENSBBBG00000002347)	SLC39A13 (ENSBBBG00000002358)	ENSBBBG00000012398	MYBPC3 (ENSBBBG00000012763)	MADD (ENSBBBG00000013202)	NR1H3 (ENSBBBG00000013293)	ACP2 (ENSBBBG00000001605)	DDB2 (ENSBBBG00000007213)	PACSIN3 (ENSBBBG00000013420) ##22	ARFGAP2 (ENSBBBG00000013487)	CSTPP1 (ENSBBBG00000013522)	LRP4 (ENSBBBG00000007215)	CKAP5 (ENSBBBG00000002889)	F2 (ENSBBBG00000002915)	ZNF408 (ENSBBBG00000013728)	ARHGAP1 (ENSBBBG00000013736)	ATG13 (ENSBBBG00000002985)	HARBI1 (ENSBBBG00000013882)	AMBRA1 (ENSBBBG00000014063)	CHRM4 (ENSBBBG00000014075)	ENSBBBG00000014102	ENSBBBG00000003163	CREB3L1 (ENSBBBG00000003171)	PHF21A (ENSBBBG00000003187)
Cetacea	ANCESTRAL SPECIES	4	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Odontoceti	ANCESTRAL SPECIES	4	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Odontoceti_a	ANCESTRAL SPECIES	4	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Monodontidae	ANCESTRAL SPECIES	2	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154234.b	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Narwhal	MODERN SPECIES	314	ENSMMNG00015021868	FAM180B (ENSMMNG00015021863)	NDUFS3 (ENSMMNG00015021859)	KBTBD4 (ENSMMNG00015021852)	PTPMT1 (ENSMMNG00015021844)	CELF1 (ENSMMNG00015021830)	RAPSN (ENSMMNG00015021818)	PSMC3 (ENSMMNG00015021802)	SLC39A13 (ENSMMNG00015021773)	SPI1 (ENSMMNG00015021760)	MYBPC3 (ENSMMNG00015021686)	MADD (ENSMMNG00015021102)	NR1H3 (ENSMMNG00015020682)	ACP2 (ENSMMNG00015020547)	DDB2 (ENSMMNG00015020426)	PACSIN3 (ENSMMNG00015020360) ##22	ARFGAP2 (ENSMMNG00015020303)	CSTPP1 (ENSMMNG00015020243)	LRP4 (ENSMMNG00015020152)	CKAP5 (ENSMMNG00015019798)	F2 (ENSMMNG00015019642)	ZNF408 (ENSMMNG00015019610)	ARHGAP1 (ENSMMNG00015019583)	ATG13 (ENSMMNG00015019491)	HARBI1 (ENSMMNG00015019436)	AMBRA1 (ENSMMNG00015019294)	CHRM4 (ENSMMNG00015019208)	MDK (ENSMMNG00015019173)	DGKZ (ENSMMNG00015018868)	CREB3L1 (ENSMMNG00015018682)	PHF21A (ENSMMNG00015018555)
Beluga whale	MODERN SPECIES	7	ENSDLEG00000004045	FAM180B (ENSDLEG00000000116)	NDUFS3 (ENSDLEG00000000150)	KBTBD4 (ENSDLEG00000000205)	PTPMT1 (ENSDLEG00000000244)	CELF1 (ENSDLEG00000000264)	RAPSN (ENSDLEG00000000322)	PSMC3 (ENSDLEG00000000360)	SLC39A13 (ENSDLEG00000000405)	SPI1 (ENSDLEG00000000443)	MYBPC3 (ENSDLEG00000000811)	MADD (ENSDLEG00000003539)	NR1H3 (ENSDLEG00000013403)	ACP2 (ENSDLEG00000013563)	DDB2 (ENSDLEG00000014125)	PACSIN3 (ENSDLEG00000014213) ##22	ARFGAP2 (ENSDLEG00000014461)	CSTPP1 (ENSDLEG00000016182)	LRP4 (ENSDLEG00000016355)	CKAP5 (ENSDLEG00000018239)	F2 (ENSDLEG00000018821)	ZNF408 (ENSDLEG00000018910)	ARHGAP1 (ENSDLEG00000018942)	ATG13 (ENSDLEG00000019150)	HARBI1 (ENSDLEG00000019555)	AMBRA1 (ENSDLEG00000019560)	CHRM4 (ENSDLEG00000019579)	MDK (ENSDLEG00000019582)	DGKZ (ENSDLEG00000019589)	CREB3L1 (ENSDLEG00000019610)	PHF21A (ENSDLEG00000019624)
Vaquita	MODERN SPECIES	19	ENSPSNG00000011949	FAM180B (ENSPSNG00000011919)	NDUFS3 (ENSPSNG00000011780)	KBTBD4 (ENSPSNG00000011651)	PTPMT1 (ENSPSNG00000011591)	CELF1 (ENSPSNG00000011349)	RAPSN (ENSPSNG00000010989)	PSMC3 (ENSPSNG00000010889)	SLC39A13 (ENSPSNG00000010822)	SPI1 (ENSPSNG00000010691)	MYBPC3 (ENSPSNG00000009622)	MADD (ENSPSNG00000007281)	NR1H3 (ENSPSNG00000006534)	ACP2 (ENSPSNG00000006273)	DDB2 (ENSPSNG00000006057)	PACSIN3 (ENSPSNG00000006003) ##22	ENSPSNG00000005975	CSTPP1 (ENSPSNG00000005920)	LRP4 (ENSPSNG00000005781)	CKAP5 (ENSPSNG00000005667)	F2 (ENSPSNG00000005610)	ZNF408 (ENSPSNG00000005582)	ARHGAP1 (ENSPSNG00000005549)	ATG13 (ENSPSNG00000005490)	HARBI1 (ENSPSNG00000005453)	AMBRA1 (ENSPSNG00000005291)	CHRM4 (ENSPSNG00000005202)	MDK (ENSPSNG00000005164)	DGKZ (ENSPSNG00000004933)	CREB3L1 (ENSPSNG00000004707)	PHF21A (ENSPSNG00000004656)
Dolphin	MODERN SPECIES	2041	C1QTNF4 (ENSTTRG00000014168)	FAM180B (ENSTTRG00000014167)	NDUFS3 (ENSTTRG00000014164)	KBTBD4 (ENSTTRG00000014159)	ENSTTRG00000014158	CELF1 (ENSTTRG00000014157)	RAPSN (ENSTTRG00000014156)	PSMC3 (ENSTTRG00000014155)	SLC39A13 (ENSTTRG00000014154)	SPI1 (ENSTTRG00000014153)	MYBPC3 (ENSTTRG00000014152)	MADD (ENSTTRG00000014150)	NR1H3 (ENSTTRG00000014149)	ACP2 (ENSTTRG00000014147)	DDB2 (ENSTTRG00000014146)	PACSIN3 (ENSTTRG00000014143) ##22	ARFGAP2 (ENSTTRG00000014137)	CSTPP1 (ENSTTRG00000014133)	LRP4 (ENSTTRG00000014129)	CKAP5 (ENSTTRG00000014121)
Sperm whale	MODERN SPECIES	199														ACP2 (ENSPCTG00005021825)	DDB2 (ENSPCTG00005021776)	PACSIN3 (ENSPCTG00005021733) ##22	ARFGAP2 (ENSPCTG00005021635)	CUNH11orf49 (ENSPCTG00005021607)
Blue whale	MODERN SPECIES	19	ENSBMSG00010022000	FAM180B (ENSBMSG00010021998)	NDUFS3 (ENSBMSG00010021996)	KBTBD4 (ENSBMSG00010021993)	PTPMT1 (ENSBMSG00010021990)	CELF1 (ENSBMSG00010021983)	RAPSN (ENSBMSG00010021975)	PSMC3 (ENSBMSG00010021968)	SLC39A13 (ENSBMSG00010021960)	SPI1 (ENSBMSG00010021953)	MYBPC3 (ENSBMSG00010021914)	MADD (ENSBMSG00010018497)	NR1H3 (ENSBMSG00010018229)	ACP2 (ENSBMSG00010018103)	DDB2 (ENSBMSG00010017897)	PACSIN3 (ENSBMSG00010017852) ##22	ARFGAP2 (ENSBMSG00010017710)	CSTPP1 (ENSBMSG00010017644)	LRP4 (ENSBMSG00010017494)	CKAP5 (ENSBMSG00010017392)	F2 (ENSBMSG00010017325)	ZNF408 (ENSBMSG00010017299)	ENSBMSG00010017280	ARHGAP1 (ENSBMSG00010017220)	ATG13 (ENSBMSG00010017110)	HARBI1 (ENSBMSG00010017065)	AMBRA1 (ENSBMSG00010015727)	CHRM4 (ENSBMSG00010015622)	MDK (ENSBMSG00010015583)	DGKZ (ENSBMSG00010014872)	CREB3L1 (ENSBMSG00010014728)
Marsupialia	ANCESTRAL SPECIES	7	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E.w.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000164059	ENSGT00930000151062	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124
Opossum	MODERN SPECIES	4	MTCH2 (ENSMODG00000019919)	ENSMODG00000024428	ENSMODG00000019916	KBTBD4 (ENSMODG00000019915)	ENSMODG00000019914	CELF1 (ENSMODG00000019913)	RAPSN (ENSMODG00000041760)	ENSMODG00000019911	SLC39A13 (ENSMODG00000019910)	SPI1 (ENSMODG00000019909)	MYBPC3 (ENSMODG00000019908)	MADD (ENSMODG00000019907)	NR1H3 (ENSMODG00000019906)	ACP2 (ENSMODG00000019905)	ENSMODG00000019904	PACSIN3 (ENSMODG00000019903) ##22	ARFGAP2 (ENSMODG00000019901)	CSTPP1 (ENSMODG00000019899)	ENSMODG00000019900	LRP4 (ENSMODG00000019898)	CKAP5 (ENSMODG00000019897)	ENSMODG00000019896	ZNF408 (ENSMODG00000019895)	ARHGAP1 (ENSMODG00000019894)	ATG13 (ENSMODG00000019893)	HARBI1 (ENSMODG00000019892)	AMBRA1 (ENSMODG00000019891)	CHRM4 (ENSMODG00000019889)	CREB3L1 (ENSMODG00000019888)	ENSMODG00000046087	PHF21A (ENSMODG00000019887)
Marsupialia_b	ANCESTRAL SPECIES	8	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E.w.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000164059	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124	ENSGT00940000158758
Diprotodontia	ANCESTRAL SPECIES	46	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E.w.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000164059	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124	ENSGT00940000158758
Diprotodontia_a	ANCESTRAL SPECIES	46	ENSGT00940000161832.a	ENSGT00940000154479.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT01020000230346.E.w.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000164059	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152	ENSGT00940000159848	ENSGT00940000156124	ENSGT00940000158758
koala	MODERN SPECIES	139	ENSPCIG00000016521	ENSPCIG00000037012	NDUFS3 (ENSPCIG00000016526)	KBTBD4 (ENSPCIG00000016600)	ENSPCIG00000016602	CELF1 (ENSPCIG00000022947)	RAPSN (ENSPCIG00000022952)	PSMC3 (ENSPCIG00000007254)	SLC39A13 (ENSPCIG00000007257)	SPI1 (ENSPCIG00000007258)	MYBPC3 (ENSPCIG00000007264)	MADD (ENSPCIG00000007278)	NR1H3 (ENSPCIG00000007281)	ACP2 (ENSPCIG00000007284)	DDB2 (ENSPCIG00000007289)	PACSIN3 (ENSPCIG00000007325) ##22	ARFGAP2 (ENSPCIG00000007326)	CSTPP1 (ENSPCIG00000007328)	LRP4 (ENSPCIG00000007330)	CKAP5 (ENSPCIG00000007436)	ENSPCIG00000020069	ARHGAP1 (ENSPCIG00000020071)	ATG13 (ENSPCIG00000020075)	HARBI1 (ENSPCIG00000020090)	AMBRA1 (ENSPCIG00000020093)	CHRM4 (ENSPCIG00000020098)	MDK (ENSPCIG00000020100)	DGKZ (ENSPCIG00000020101)	CREB3L1 (ENSPCIG00000020114)	PHF21A (ENSPCIG00000020119)	LARGE2 (ENSPCIG00000020123)
Common wonbat	MODERN SPECIES	1058	ENSVURG00010009744	ENSVURG00010009751	NDUFS3 (ENSVURG00010009759)	KBTBD4 (ENSVURG00010009776)	ENSVURG00010009789	CELF1 (ENSVURG00010009795)	RAPSN (ENSVURG00010009821)	ENSVURG00010009856	SLC39A13 (ENSVURG00010009882)	SPI1 (ENSVURG00010009914)	MYBPC3 (ENSVURG00010009939)	MADD (ENSVURG00010010013)	NR1H3 (ENSVURG00010010094)	ACP2 (ENSVURG00010010120)	DDB2 (ENSVURG00010010162)	PACSIN3 (ENSVURG00010010192) ##22	ARFGAP2 (ENSVURG00010010235)	CSTPP1 (ENSVURG00010010291)	LRP4 (ENSVURG00010010304)	CKAP5 (ENSVURG00010010351)	ARHGAP1 (ENSVURG00010010440)	ATG13 (ENSVURG00010010461)	HARBI1 (ENSVURG00010010503)	AMBRA1 (ENSVURG00010010523)	CHRM4 (ENSVURG00010010600)	MDK (ENSVURG00010010613)	DGKZ (ENSVURG00010010658)	CREB3L1 (ENSVURG00010010813)	PHF21A (ENSVURG00010010860)	LARGE2 (ENSVURG00010010886)	PEX16 (ENSVURG00010010942)
Wallaby	MODERN SPECIES	7273														ACP2 (ENSMEUG00000009144)	ENSMEUG00000009131	ENSMEUG00000009113 ##22
Tasmanian devil	MODERN SPECIES	5	C1QTNF4 (ENSSHAG00000030434)	ENSSHAG00000026627	NDUFS3 (ENSSHAG00000025275)	KBTBD4 (ENSSHAG00000021528)	ENSSHAG00000024403	CELF1 (ENSSHAG00000017438)	RAPSN (ENSSHAG00000017408)	PSMC3 (ENSSHAG00000017393)	SLC39A13 (ENSSHAG00000017377)	SPI1 (ENSSHAG00000017291)	MYBPC3 (ENSSHAG00000017252)	NR1H3 (ENSSHAG00000017152)	MADD (ENSSHAG00000017189)	ACP2 (ENSSHAG00000017126)	DDB2 (ENSSHAG00000017108)	PACSIN3 (ENSSHAG00000017065) ##22	ENSSHAG00000023512	CSTPP1 (ENSSHAG00000032264)	LRP4 (ENSSHAG00000016580)	CKAP5 (ENSSHAG00000016386)	ENSSHAG00000016366	ARHGAP1 (ENSSHAG00000016324)	HARBI1 (ENSSHAG00000016218)	ATG13 (ENSSHAG00000016284)	AMBRA1 (ENSSHAG00000015742)	ENSSHAG00000030675	DGKZ (ENSSHAG00000026033)	CREB3L1 (ENSSHAG00000015230)	PHF21A (ENSSHAG00000014057)	LARGE2 (ENSSHAG00000022457)	PEX16 (ENSSHAG00000031730)
Platypus	MODERN SPECIES	14	MTCH2 (ENSOANG00000007903)	ENSOANG00000007902	NDUFS3 (ENSOANG00000007900)	KBTBD4 (ENSOANG00000007899)	ENSOANG00000050504	CELF1 (ENSOANG00000007896)	RAPSN (ENSOANG00000007894)	PSMC3 (ENSOANG00000040187)	SLC39A13 (ENSOANG00000007890)	SPI1 (ENSOANG00000050063)	MYBPC3 (ENSOANG00000007889)	MADD (ENSOANG00000007884)	NR1H3 (ENSOANG00000006250)	ACP2 (ENSOANG00000048933)	DDB2 (ENSOANG00000006247)	PACSIN3 (ENSOANG00000004082) ##22	ARFGAP2 (ENSOANG00000004083)	CSTPP1 (ENSOANG00000031094)	LRP4 (ENSOANG00000001954)	CKAP5 (ENSOANG00000002765)	ENSOANG00000002767	ARHGAP1 (ENSOANG00000002770)	ATG13 (ENSOANG00000006550)	HARBI1 (ENSOANG00000004814)	AMBRA1 (ENSOANG00000014521)	CHRM4 (ENSOANG00000045540)	MDK (ENSOANG00000037361)	DGKZ (ENSOANG00000003635)	CREB3L1 (ENSOANG00000005356)	PHF21A (ENSOANG00000005355)	LARGE2 (ENSOANG00000005352)
Anura	ANCESTRAL SPECIES	75	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00940000158775	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000016785	ENSGT00940000161051.b.g	ENSGT01020000230346.E	ENSGT00390000015299.a.b.a	ENSGT00940000157349	ENSGT00940000159754	ENSGT00940000157698.b	ENSGT00940000156718	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00940000165402	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000164059	ENSGT00930000151062	ENSGT00940000160630	ENSGT01030000234629.E.b	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00390000016223	ENSGT00940000160394.a	ENSGT00390000007640.b	ENSGT00940000156152
Frog	MODERN SPECIES	4	prr5l (ENSXETG00000031096)	commd9 (ENSXETG00000007551)	ldlrad3 (ENSXETG00000007552)	trim44 (ENSXETG00000007553)	ENSXETG00000047544	fjx1 (ENSXETG00000047230)	pamr1 (ENSXETG00000007554)	slc1a2 (ENSXETG00000007555)	cd44 (ENSXETG00000007556)	pdhx (ENSXETG00000007557)	apip (ENSXETG00000007558)	ehf (ENSXETG00000007559)	elf5 (ENSXETG00000007560)	cat.1 (ENSXETG00000007561)	cat.3 (ENSXETG00000048405)	pacsin3 (ENSXETG00000005090) ##22	lrp4 (ENSXETG00000005091)	XB5902317 [provisional:ces1c] (ENSXETG00000026362)	ENSXETG00000047305	arfgap2 (ENSXETG00000005097)	ENSXETG00000040384	ENSXETG00000035346	ENSXETG00000047843	ENSXETG00000039627	XB5917669 [provisional] (ENSXETG00000044053)	ENSXETG00000041678	ENSXETG00000045701	ENSXETG00000041160	ano1 (ENSXETG00000001994)	ENSXETG00000047081	fgf3 (ENSXETG00000048681)
Leishan spiny toad	MODERN SPECIES	1	KBTBD4 (ENSLLEG00000024539)	PTPMT1 (ENSLLEG00000024438)	CELF1 (ENSLLEG00000023639)	RAPSN (ENSLLEG00000023499)	ENSLLEG00000023282	PSMC3 (ENSLLEG00000022403)	ENSLLEG00000022209	ENSLLEG00000022137	SLC39A13 (ENSLLEG00000022034)	ENSLLEG00000022001	SPI1 (ENSLLEG00000021892)	MYBPC3 (ENSLLEG00000015296)	MADD (ENSLLEG00000013247)	ACP2 (ENSLLEG00000013054)	DDB2 (ENSLLEG00000012938)	PACSIN3 (ENSLLEG00000012543) ##22	ENSLLEG00000012474	ENSLLEG00000012427	CSTPP1 (ENSLLEG00000012343)	LRP4 (ENSLLEG00000011330)	CKAP5 (ENSLLEG00000009276)	ENSLLEG00000008894	ZNF408 (ENSLLEG00000008856)	ARHGAP1 (ENSLLEG00000008726)	ENSLLEG00000025519	ATG13 (ENSLLEG00000025414)	HARBI1 (ENSLLEG00000025377)	ENSLLEG00000025363	AMBRA1 (ENSLLEG00000025123)	ENSLLEG00000025086	CHRM4 (ENSLLEG00000025061)
Coelacanth	MODERN SPECIES	229	f2 (ENSLACG00000018806)	znf408 (ENSLACG00000018810)	ENSLACG00000018813	ckap5 (ENSLACG00000018814)	LRP4 (ENSLACG00000018826)	CSTPP1 (ENSLACG00000018885)	ENSLACG00000018896	PSMC3 (ENSLACG00000018899)	ENSLACG00000018907	SLC39A13 (ENSLACG00000018915)	SPI1 (ENSLACG00000018937)	MYBPC3 (ENSLACG00000018941)	MADD (ENSLACG00000018949)	NR1H3 (ENSLACG00000018964)	ACP2 (ENSLACG00000018968)	PACSIN3 (ENSLACG00000018971) ##22	ARFGAP2 (ENSLACG00000018982)	ENSLACG00000018983	ENSLACG00000018985	RAPSN (ENSLACG00000018987)	CELF1 (ENSLACG00000018990)	PTPMT1 (ENSLACG00000018994)	KBTBD4 (ENSLACG00000018996)	NDUFS3 (ENSLACG00000018998)	C1QTNF4 (ENSLACG00000019002)	npsn (ENSLACG00000019008)	NUP160 (ENSLACG00000019014)	MTCH2 (ENSLACG00000019019)	ENSLACG00000019022	AGBL2 (ENSLACG00000019026)	FNBP4 (ENSLACG00000019029)
Actinopterygii	ANCESTRAL SPECIES	12	ENSGT00940000159837	ENSGT00930000151062	ENSGT00940000164059	ENSGT00940000160630	ENSGT01030000234629.E.b	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00940000156124	ENSGT00940000159848	ENSGT00940000156152.e.a	ENSGT00390000007640.b	ENSGT00940000160394.a	ENSGT00390000016223	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00940000165402	ENSGT00390000017790	ENSGT00940000158758	ENSGT00390000000417.a.b	ENSGT00390000010152	ENSGT00940000159763	ENSGT00940000157816.a.b	ENSGT00940000166897	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128	ENSGT01090000260003.a.a	ENSGT00940000157182	ENSGT00390000002105
Neopterygii	ANCESTRAL SPECIES	4	ENSGT00930000151062	ENSGT00940000164059	ENSGT00940000160630	ENSGT01030000234629.E.b	ENSGT00390000007055	ENSGT00940000154348.c.b.a	ENSGT00940000166946	ENSGT00940000156124	ENSGT00940000159848	ENSGT00940000156152.e.a	ENSGT00390000007640.b	ENSGT00940000160394.a	ENSGT00390000016223	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000155568	ENSGT00940000165402	ENSGT00390000017790	ENSGT00940000158758	ENSGT00390000000417.a.b	ENSGT00390000010152	ENSGT00940000159763	ENSGT00940000157816.a.b	ENSGT00940000166897	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128	ENSGT00940000157182	ENSGT00390000002105	ENSGT01050000244900.a.a.b
Osteoglossocephalai	ANCESTRAL SPECIES	179	ENSGT01030000234629.E.b	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b	ENSGT00940000166946	ENSGT00940000156124.c.a	ENSGT00940000159848	ENSGT00940000156152.e.a.a	ENSGT00940000156152.e.a.b	ENSGT00390000007640.b.b	ENSGT00940000156152.e.b	ENSGT00390000007640.b.a	ENSGT00940000160394.a	ENSGT00390000016223	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a ##22	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000005535	ENSGT00940000164949	ENSGT00390000013180
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	252	ENSGT00990000203615.a.a.a.a	ENSGT00730000111696.b	ENSGT00940000153571.b	ENSGT00940000160226.j	ENSGT00940000159837	ENSGT00930000151062	ENSGT00940000164059	ENSGT00940000160630	ENSGT00940000156124.c.a.b	ENSGT00940000159848.a	ENSGT00940000156152.e.a.b	ENSGT00390000007640.b.b	ENSGT00940000160394.a.a	ENSGT00940000158446	ENSGT00510000047881	ENSGT00950000182973.b.a.a ##22
Asian bonytongue	MODERN SPECIES	2	ANO3 (ENSSFOG00015009301)	cd59 (ENSSFOG00015025427)	syt13 (ENSSFOG00015026665)	ENSSFOG00015009222	znf408 (ENSSFOG00015009198)	f2 (ENSSFOG00015009140)	arhgap1 (ENSSFOG00015009089)	ENSSFOG00015009009	PHF21A (ENSSFOG00015008982)	CREB3L1 (ENSSFOG00015008922)	DGKZ (ENSSFOG00015008794)	MDK (ENSSFOG00015008779)	CHRM4 (ENSSFOG00015008755)	acp2 (ENSSFOG00015008743)	ddb2 (ENSSFOG00015008716)	pacsin3 (ENSSFOG00015008679) ##22	kbtbd4 (ENSSFOG00015008654)	zdhhc7 (ENSSFOG00015032177)	nip7 (ENSSFOG00015008579)	cog8 (ENSSFOG00015008533)	NOB1 (ENSSFOG00015008503)	MLKL (ENSSFOG00015008473)	RFWD3 (ENSSFOG00015008444)	glg1b (ENSSFOG00015008366)	PDPR (ENSSFOG00015008312)	ENSSFOG00015008164	CLEC18A (ENSSFOG00015008123)	ENSSFOG00015008104	urahb (ENSSFOG00015008090)	pdcd5 (ENSSFOG00015008074)	mvda (ENSSFOG00015008032)
P. kingsleyae	MODERN SPECIES	347	ENSPKIG00000002788	cd59 (ENSPKIG00000002810)	syt13 (ENSPKIG00000002827)	ENSPKIG00000002851	znf408 (ENSPKIG00000002884)	f2 (ENSPKIG00000002920)	arhgap1 (ENSPKIG00000002970)	PHF21A (ENSPKIG00000002990)	CREB3L1 (ENSPKIG00000003036)	DGKZ (ENSPKIG00000003209)	MDK (ENSPKIG00000003516)	CHRM4 (ENSPKIG00000003537)	acp2 (ENSPKIG00000003549)	acp2 (ENSPKIG00000003574)	ddb2 (ENSPKIG00000003594)	pacsin3 (ENSPKIG00000003624) ##22	kbtbd4 (ENSPKIG00000003656)	rapsn (ENSPKIG00000003675)
Osteoglossiformes	ANCESTRAL SPECIES	342									ENSGT00390000007055	ENSGT00940000166946	ENSGT00940000156124.c.a.a	ENSGT00940000159848.b	ENSGT00940000156152.e.a.a	ENSGT00940000160394.a.b	ENSGT00390000016223	ENSGT00950000182973.b.a.b ##22	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000005535	ENSGT00950000182990.a.a.a.b.a	ENSGT00940000165047
Asian bonytongue	MODERN SPECIES	22	tmem17 (ENSSFOG00015020031)	aplnr2 (ENSSFOG00015025805)	ENSSFOG00015027821	ENSSFOG00015019991	fbxo3 (ENSSFOG00015019965)	SYT13 (ENSSFOG00015024876)	ENSSFOG00015019940	atg13 (ENSSFOG00015019823)	zgc:110699 (ENSSFOG00015029583)	phf21aa (ENSSFOG00015019755)	creb3l1 (ENSSFOG00015019727)	DGKZ (ENSSFOG00015019562)	mdkb (ENSSFOG00015019534)	CHRM4 (ENSSFOG00015019529)	ambra1a (ENSSFOG00015019495)	pacsin3 (ENSSFOG00015019453) ##22	c1qtnf4 (ENSSFOG00015025161)	ENSSFOG00015019439	ndufs3 (ENSSFOG00015019420)	ptpmt1 (ENSSFOG00015032056)	celf1 (ENSSFOG00015019353)	ENSSFOG00015019308	nqo1 (ENSSFOG00015019294)	mrpl21 (ENSSFOG00015019282)	fads2 (ENSSFOG00015019252)	gatd1 (ENSSFOG00015019214)	MYZAP (ENSSFOG00015019197)	CGNL1 (ENSSFOG00015019177)	TCF12 (ENSSFOG00015019071)	mns1 (ENSSFOG00015019021)	mns1 (ENSSFOG00015029570)
P. kingsleyae	MODERN SPECIES	16	ENSPKIG00000013288	ENSPKIG00000013256	fbxo3 (ENSPKIG00000013214)	ENSPKIG00000013179	SYT13 (ENSPKIG00000013155)	ENSPKIG00000013122	atg13 (ENSPKIG00000012989)	zgc:110699 (ENSPKIG00000012910)	phf21aa (ENSPKIG00000012884)	creb3l1 (ENSPKIG00000012854)	ENSPKIG00000012837	DGKZ (ENSPKIG00000012653)	mdkb (ENSPKIG00000012563)	CHRM4 (ENSPKIG00000012549)	ambra1a (ENSPKIG00000012478)	pacsin3 (ENSPKIG00000012426) ##22	c1qtnf4 (ENSPKIG00000012410)	ndufs3 (ENSPKIG00000012394)	ptpmt1 (ENSPKIG00000012375)	celf1 (ENSPKIG00000012324)	mrpl21 (ENSPKIG00000012297)	fads2 (ENSPKIG00000012250)	gatd1 (ENSPKIG00000012226)	ENSPKIG00000012208
Clupeocephala	ANCESTRAL SPECIES	243	ENSGT00940000160226	ENSGT00930000151062	ENSGT00940000164059	ENSGT00940000160630	ENSGT01030000234629.E.b	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b	ENSGT00940000166946	ENSGT00940000156124.c.a	ENSGT00940000159848	ENSGT00940000156152.e.a.a	ENSGT00940000156152.e.b	ENSGT00390000007640.b.a	ENSGT00940000160394.a	ENSGT00940000158446	ENSGT00950000182973.b.a ##22	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000005535	ENSGT00940000164949	ENSGT00390000013180
Euteleosteomorpha	ANCESTRAL SPECIES	3	ENSGT00940000153571.b	ENSGT00940000160226	ENSGT00930000151062	ENSGT00940000164059	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b	ENSGT00940000166946	ENSGT00940000156124.c.a	ENSGT00940000159848	ENSGT00940000156152.e.a.a	ENSGT00940000156152.f	ENSGT00940000160394.a	ENSGT00390000016223	ENSGT00940000158446	ENSGT00950000182973.b.a ##22	ENSGT00940000163716.c.b	ENSGT00940000161051.a.a.b.a	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00940000158970	ENSGT00390000005535	ENSGT00940000164949	ENSGT00390000013180	ENSGT01030000235035	ENSGT00390000007623.c	ENSGT00530000063582.b	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000156586
Protacanthopterygii	ANCESTRAL SPECIES	2	ENSGT00730000111696.a	ENSGT00940000153571.b	ENSGT00940000160226	ENSGT00930000151062	ENSGT00940000164059	ENSGT00940000160630	ENSGT00390000007055	ENSGT00940000166946	ENSGT00940000156124.c.a	ENSGT00940000159848	ENSGT00940000156152.e.a.a	ENSGT00390000007640.b.b	ENSGT00940000160394.a	ENSGT00390000016223	ENSGT00940000158446	ENSGT00950000182973.b.a ##22	ENSGT00940000163716.c.b	ENSGT00940000161051.a.a.b.a	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00970000195576	ENSGT00940000158970	ENSGT00390000005535	ENSGT00940000164949	ENSGT00390000013180	ENSGT01030000235035	ENSGT00390000007623.c	ENSGT00530000063582.b	ENSGT00940000156718	ENSGT00940000159068
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	46	ENSGT00940000160394.a.f	ENSGT00390000016223.h.a.b	ENSGT00940000158446.s	ENSGT00950000182973.b.a.d ##22	ENSGT00940000163716.c.b	ENSGT00940000161832.a.d	ENSGT00390000017480.m.a	ENSGT00970000195576	ENSGT00940000156124.c.a.f	ENSGT00940000159848.e	ENSGT00940000156152.e.a.a.d	ENSGT00390000007640.b.b.n.a.b	ENSGT00940000160394.a.e	ENSGT00390000016223.h.a.a	ENSGT00940000158446.t	ENSGT00950000182973.b.a.c ##22	ENSGT00940000161832.a.c	ENSGT00390000017480.m.b	ENSGT00390000014065	ENSGT00940000158970.w.b	ENSGT00940000158970.x	ENSGT00390000005535.i	ENSGT00940000164949.c	ENSGT00390000013180.i	ENSGT01030000235035.d	ENSGT00390000007623.c.a	ENSGT00530000063582.b.h	ENSGT00940000156718.l	ENSGT00940000159068.f	ENSGT00940000156586.s.a	ENSGT00970000195769
Salmoninae_a	ANCESTRAL SPECIES	47	ENSGT00390000016223.h.a.b	ENSGT00940000158446.s	ENSGT00950000182973.b.a.d ##22	ENSGT00940000161832.a.d	ENSGT00390000017480.m.a	ENSGT00970000195576	ENSGT00940000159848.e.a.a	ENSGT00940000166946.c	ENSGT00940000156124.c.a.f	ENSGT00940000159848.e.b	ENSGT00940000156152.e.a.a.d	ENSGT00390000007640.b.b.n.a.b	ENSGT00940000160394.a.e	ENSGT00390000016223.h.a.a	ENSGT00940000158446.t	ENSGT00950000182973.b.a.c ##22	ENSGT00940000161832.a.c	ENSGT00390000017480.m.b	ENSGT00390000014065	ENSGT00940000158970.w.b	ENSGT00390000005535.i	ENSGT00940000164949.c	ENSGT00390000013180.i	ENSGT01030000235035.d	ENSGT00390000007623.c.a	ENSGT00530000063582.b.h	ENSGT00940000156718.l	ENSGT00940000159068.f	ENSGT00940000156586.s.a	ENSGT00970000195769	ENSGT00940000162248.e
Salmo	ANCESTRAL SPECIES	30	ENSGT00940000160226.d	ENSGT00940000159837.e.a	ENSGT00930000151062.k	ENSGT00940000164059.e	ENSGT00940000160630.f	ENSGT00390000007055.n.a	ENSGT00940000154348.c.b.a.b	ENSGT00940000166946.c	ENSGT00940000156124.c.a.e.a	ENSGT00940000159848.e.b	ENSGT00940000156152.e.a.a.d	ENSGT00390000007640.b.b.n.a.b	ENSGT00940000160394.a.e	ENSGT00390000016223.h.a.a	ENSGT00940000158446.t	ENSGT00950000182973.b.a.c ##22	ENSGT00940000161832.a.c	ENSGT00390000017480.m.b	ENSGT00390000014065	ENSGT00940000158970.w.b	ENSGT00390000005535.i	ENSGT00940000164949.c	ENSGT00940000164949.d	ENSGT00390000013180.i	ENSGT01030000235035.d	ENSGT00390000007623.c.a	ENSGT00530000063582.b.h	ENSGT00940000156718.l	ENSGT00940000159068.f	ENSGT00940000156586.s.a	ENSGT00970000195769
River trout	MODERN SPECIES	21	aplnr2 (ENSSTUG00000008041)	fbxo3 (ENSSTUG00000008049)	syt13 (ENSSTUG00000008070)	znf408 (ENSSTUG00000008074)	f2 (ENSSTUG00000008087)	arhgap1 (ENSSTUG00000008353)	atg13 (ENSSTUG00000008494)	zgc:110699 (ENSSTUG00000008580)	phf21aa (ENSSTUG00000008605)	creb3l1 (ENSSTUG00000009242)	DGKZ (ENSSTUG00000009277)	MDK (ENSSTUG00000009795)	CHRM4 (ENSSTUG00000009805)	ambra1a (ENSSTUG00000009841)	acp2 (ENSSTUG00000009962)	pacsin3 (ENSSTUG00000010035) ##22	c1qtnf4 (ENSSTUG00000010133)	ndufs3 (ENSSTUG00000010137)	ptpmt1 (ENSSTUG00000010172)	celf1 (ENSSTUG00000010194)	mrpl21 (ENSSTUG00000010819)	ENSSTUG00000010867	luzp2 (ENSSTUG00000010885)	ENSSTUG00000010908	ENSSTUG00000010911	ENSSTUG00000010917	fibinb (ENSSTUG00000010922)	bbox1 (ENSSTUG00000010926)	MADD (ENSSTUG00000010977)	nr1h3 (ENSSTUG00000011589)	arl14ep (ENSSTUG00000011718)
Atlantic salmon	MODERN SPECIES	18	fbxo3 (ENSSSAG00000100816)	ENSSSAG00000041993	ENSSSAG00000083929	f2 (ENSSSAG00000041686)	ENSSSAG00000085852	arhgap1 (ENSSSAG00000041564)	atg13 (ENSSSAG00000041473)	harbi1 (ENSSSAG00000079577)	phf21aa (ENSSSAG00000033080)	creb3l1 (ENSSSAG00000032234)	DGKZ (ENSSSAG00000015434)	MDK (ENSSSAG00000015295)	CHRM4 (ENSSSAG00000111835)	ambra1a (ENSSSAG00000009870)	acp2 (ENSSSAG00000009392)	ENSSSAG00000118449 ##22	c1qtnf4 (ENSSSAG00000114220)	NDUS3 (ENSSSAG00000009345)	ptpmt1 (ENSSSAG00000009313)	celf1 (ENSSSAG00000009118)	ENSSSAG00000075506	ENSSSAG00000075495	ENSSSAG00000075491	fibinb (ENSSSAG00000075488)	bbox1 (ENSSSAG00000075482)	ENSSSAG00000103134	ENSSSAG00000074218	nr1h3 (ENSSSAG00000074043)	ENSSSAG00000074032	ENSSSAG00000074035	ENSSSAG00000084029
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00940000153571.b.a	ENSGT00940000160226.d	ENSGT00940000159837.e.a	ENSGT00930000151062.k	ENSGT00940000164059.e	ENSGT00940000160630.f	ENSGT00390000007055.n.a	ENSGT00940000166946.c	ENSGT00940000156124.c.a.f	ENSGT00940000159848.e.b	ENSGT00940000156152.e.a.a.d	ENSGT00390000007640.b.b.n.a.b	ENSGT00940000160394.a.e	ENSGT00390000016223.h.a.a	ENSGT00940000158446.t	ENSGT00950000182973.b.a.c ##22	ENSGT00940000161832.a.c	ENSGT00390000017480.m.b	ENSGT00390000014065	ENSGT00940000158970.w.b	ENSGT00940000164949.c	ENSGT00390000013180.i	ENSGT01030000235035.d	ENSGT00390000007623.c.a	ENSGT00530000063582.b.h	ENSGT00940000156718.l	ENSGT00940000159068.f	ENSGT01030000239319	ENSGT00940000156586.t	ENSGT00970000195769	ENSGT00940000162248.e
Rainbow trout	MODERN SPECIES	27	ENSOMYG00000016474	ENSOMYG00000016465	ENSOMYG00000016453	f2 (ENSOMYG00000016322)	arhgap1 (ENSOMYG00000016266)	atg13 (ENSOMYG00000016127)	zgc:110699 (ENSOMYG00000016104)	phf21aa (ENSOMYG00000016000)	creb3l1 (ENSOMYG00000015963)	ENSOMYG00000069795	DGKZ (ENSOMYG00000015689)	MDK (ENSOMYG00000015596)	CHRM4 (ENSOMYG00000069588)	ambra1a (ENSOMYG00000015485)	acp2 (ENSOMYG00000015412)	ENSOMYG00000015372 ##22	c1qtnf4 (ENSOMYG00000015360)	ndufs3 (ENSOMYG00000015351)	ptpmt1 (ENSOMYG00000015341)	ENSOMYG00000015339	celf1 (ENSOMYG00000014565)	ENSOMYG00000050080	ENSOMYG00000014509	ENSOMYG00000014473	ENSOMYG00000014458	fibinb (ENSOMYG00000014440)	bbox1 (ENSOMYG00000014433)	ENSOMYG00000014154	nr1h3 (ENSOMYG00000013850)	ENSOMYG00000013821	ENSOMYG00000013807
Oncorhynchus_a	ANCESTRAL SPECIES		ENSGT00940000153571.b.a	ENSGT00940000160226.d	ENSGT00940000159837.e.a	ENSGT00930000151062.k	ENSGT00940000164059.e	ENSGT00940000160630.f	ENSGT00390000007055.n.a	ENSGT00940000166946.c	ENSGT00940000156124.c.a.f	ENSGT00940000159848.e.b	ENSGT00940000156152.e.a.a.d	ENSGT00390000007640.b.b.n.a.b	ENSGT00940000160394.a.e	ENSGT00390000016223.h.a.a	ENSGT00940000158446.t	ENSGT00950000182973.b.a.c ##22	ENSGT00940000161832.a.c	ENSGT00390000017480.m.b	ENSGT00390000014065	ENSGT00940000158970.w.b	ENSGT00940000164949.c	ENSGT00390000013180.i	ENSGT01030000235035.d	ENSGT00390000007623.c.a	ENSGT00530000063582.b.h	ENSGT00940000156718.l	ENSGT00940000159068.f	ENSGT00940000156586.t	ENSGT00970000195769	ENSGT00940000162248.e	ENSGT00940000157760.g.a.a.b
Coho salmon	MODERN SPECIES	22	fbxo3 (ENSOKIG00005010421)	SYT13 (ENSOKIG00005010402)	ENSOKIG00005010389	znf408 (ENSOKIG00005010360)	f2 (ENSOKIG00005009492)	arhgap1 (ENSOKIG00005009433)	atg13 (ENSOKIG00005009343)	zgc:110699 (ENSOKIG00005009301)	phf21aa (ENSOKIG00005009155)	creb3l1 (ENSOKIG00005009140)	DGKZ (ENSOKIG00005007633)	MDK (ENSOKIG00005007527)	CHRM4 (ENSOKIG00005007520)	ambra1a (ENSOKIG00005007474)	acp2 (ENSOKIG00005007177)	PACSIN3 (ENSOKIG00005007130) ##22	c1qtnf4 (ENSOKIG00005007115)	ndufs3 (ENSOKIG00005007059)	ENSOKIG00005007043	ptpmt1 (ENSOKIG00005007012)	celf1 (ENSOKIG00005006857)	ENSOKIG00005006815	ENSOKIG00005006758	ENSOKIG00005006741	fibinb (ENSOKIG00005006737)	bbox1 (ENSOKIG00005006728)	MADD (ENSOKIG00005006457)	nr1h3 (ENSOKIG00005005982)	ENSOKIG00005005948	ENSOKIG00005005939	ENSOKIG00005005927
Chinook salmon	MODERN SPECIES	28	fbxo3 (ENSOTSG00005022682)	syt13 (ENSOTSG00005022676)	ENSOTSG00005022675	znf408 (ENSOTSG00005022674)	f2 (ENSOTSG00005022616)	arhgap1 (ENSOTSG00005022614)	atg13 (ENSOTSG00005022560)	zgc:110699 (ENSOTSG00005022554)	phf21aa (ENSOTSG00005021747)	creb3l1 (ENSOTSG00005021745)	DGKZ (ENSOTSG00005019329)	MDK (ENSOTSG00005019327)	CHRM4 (ENSOTSG00005019326)	ambra1a (ENSOTSG00005019322)	acp2 (ENSOTSG00005019318)	pacsin3 (ENSOTSG00005019317) ##22	c1qtnf4 (ENSOTSG00005019316)	ndufs3 (ENSOTSG00005019315)	ptpmt1 (ENSOTSG00005019314)	celf1 (ENSOTSG00005019238)	ENSOTSG00005019229	luzp2 (ENSOTSG00005019226)	ENSOTSG00005019224	fibinb (ENSOTSG00005019223)	bbox1 (ENSOTSG00005019222)	MADD (ENSOTSG00005019213)	nr1h3 (ENSOTSG00005019168)	ENSOTSG00005019165	arl14ep (ENSOTSG00005019162)	ENSOTSG00005019161	KCNA4 (ENSOTSG00005019159)
Huchen	MODERN SPECIES	141	cd59 (ENSHHUG00000033237)	fbxo3 (ENSHHUG00000033251)	syt13 (ENSHHUG00000033264)	ENSHHUG00000033270	f2 (ENSHHUG00000033278)	arhgap1 (ENSHHUG00000033322)	atg13 (ENSHHUG00000033344)	zgc:110699 (ENSHHUG00000033370)	phf21aa (ENSHHUG00000033373)	creb3l1 (ENSHHUG00000033382)	DGKZ (ENSHHUG00000033390)	MDK (ENSHHUG00000033609)	CHRM4 (ENSHHUG00000033624)	ambra1a (ENSHHUG00000033627)	acp2 (ENSHHUG00000033648)	pacsin3 (ENSHHUG00000033661) ##22	ENSHHUG00000033671	c1qtnf4 (ENSHHUG00000033675)	ndufs3 (ENSHHUG00000033678)	ptpmt1 (ENSHHUG00000033682)
Salmoninae	ANCESTRAL SPECIES	46	ENSGT00940000159837.e.a	ENSGT00930000151062.k	ENSGT00940000164059.e	ENSGT00940000160630.f	ENSGT00390000007055.n.a	ENSGT00940000154348.c.b.a.b	ENSGT00390000007055.n.b	ENSGT00940000166946	ENSGT00940000156124.c.a.e.b	ENSGT00940000159848.f	ENSGT00940000156152.e.a.a.c	ENSGT00390000007640.b.b.n.a.a	ENSGT00940000160394.a.f	ENSGT00390000016223.h.a.b	ENSGT00940000158446.s	ENSGT00950000182973.b.a.d ##22	ENSGT00940000163716.c.b	ENSGT00940000161832.a.d	ENSGT00390000017480.m.a	ENSGT00970000195576	ENSGT00940000156124.c.a.f	ENSGT00940000159848.e	ENSGT00940000156152.e.a.a.d	ENSGT00390000007640.b.b.n.a.b	ENSGT00940000160394.a.e	ENSGT00390000016223.h.a.a	ENSGT00940000158446.t	ENSGT00950000182973.b.a.c ##22	ENSGT00940000161832.a.c	ENSGT00390000017480.m.b	ENSGT00390000014065
Salmoninae_a	ANCESTRAL SPECIES	47	ENSGT00940000159837.e.a	ENSGT00930000151062.k	ENSGT00940000164059.e	ENSGT00940000160630.f	ENSGT00390000007055.n.a	ENSGT00940000154348.c.b.a.b	ENSGT00390000007055.n.b	ENSGT00940000166946.d	ENSGT00940000156124.c.a.e.b	ENSGT00940000159848.f	ENSGT00940000156152.e.a.a.c	ENSGT00390000007640.b.b.n.a.a	ENSGT00940000160394.a.f	ENSGT00390000016223.h.a.b	ENSGT00940000158446.s	ENSGT00950000182973.b.a.d ##22	ENSGT00940000161832.a.d	ENSGT00390000017480.m.a	ENSGT00970000195576	ENSGT00940000159848.e.a.a	ENSGT00940000166946.c	ENSGT00940000156124.c.a.f	ENSGT00940000159848.e.b	ENSGT00940000156152.e.a.a.d	ENSGT00390000007640.b.b.n.a.b	ENSGT00940000160394.a.e	ENSGT00390000016223.h.a.a	ENSGT00940000158446.t	ENSGT00950000182973.b.a.c ##22	ENSGT00940000161832.a.c	ENSGT00390000017480.m.b
Salmo	ANCESTRAL SPECIES	27	ENSGT00940000160226.c	ENSGT00940000159837.e.b	ENSGT00930000151062.l	ENSGT00940000164059.f	ENSGT00940000160630.e	ENSGT00390000007055.n.b	ENSGT00940000166946.d	ENSGT00940000156124.c.a.e.b	ENSGT00940000159848.f	ENSGT00940000156152.e.a.a.c	ENSGT00390000007640.b.b.n.a.a	ENSGT00390000007640.b.b.m	ENSGT00940000160394.a.f	ENSGT00390000016223.h.a.b	ENSGT00940000158446.s	ENSGT00950000182973.b.a.d ##22	ENSGT00940000161832.a.d	ENSGT00390000017480.m.a	ENSGT00970000195576	ENSGT00940000158970.w.a	ENSGT00390000005535.j	ENSGT00390000013180.j	ENSGT01030000235035.c	ENSGT00390000007623.c.b	ENSGT00530000063582.b.g	ENSGT00940000156718.k	ENSGT00940000159068.e	ENSGT00940000156586.s.b	ENSGT00940000161285.b	ENSGT00940000162248.f	ENSGT00940000157760.g.a.a.a
Atlantic salmon	MODERN SPECIES	2	znf408 (ENSSSAG00000079667)	ENSSSAG00000084866	ENSSSAG00000116260	f2 (ENSSSAG00000079657)	arhgap1 (ENSSSAG00000079636)	harbi1 (ENSSSAG00000099679)	atg13 (ENSSSAG00000079593)	zgc:110699 (ENSSSAG00000079573)	phf21aa (ENSSSAG00000079486)	creb3l1 (ENSSSAG00000079464)	DGKZ (ENSSSAG00000078388)	MDK (ENSSSAG00000105878)	CHRM4 (ENSSSAG00000091792)	ambra1a (ENSSSAG00000077527)	acp2 (ENSSSAG00000077448)	ENSSSAG00000077430 ##22	c1qtnf4 (ENSSSAG00000077427)	ndufs3 (ENSSSAG00000077420)	ENSSSAG00000096810	celf1 (ENSSSAG00000077186)	RM21 (ENSSSAG00000077160)	ENSSSAG00000077136	ENSSSAG00000077126	fibinb (ENSSSAG00000088059)	bbox1 (ENSSSAG00000077118)	ENSSSAG00000107246	ENSSSAG00000066845	nr1h3 (ENSSSAG00000065747)	arl14ep (ENSSSAG00000065722)	ENSSSAG00000065711	ENSSSAG00000085468
River trout	MODERN SPECIES	3	fbxo3 (ENSSTUG00000011660)	ENSSTUG00000011651	syt13 (ENSSTUG00000011627)	ENSSTUG00000011616	znf408 (ENSSTUG00000011608)	f2 (ENSSTUG00000011228)	arhgap1 (ENSSTUG00000011001)	atg13 (ENSSTUG00000010873)	zgc:110699 (ENSSTUG00000010856)	phf21aa (ENSSTUG00000009748)	creb3l1 (ENSSTUG00000009714)	DGKZ (ENSSTUG00000008582)	MDK (ENSSTUG00000008505)	ambra1a (ENSSTUG00000006641)	acp2 (ENSSTUG00000006509)	pacsin3 (ENSSTUG00000006467) ##22	c1qtnf4 (ENSSTUG00000006454)	ndufs3 (ENSSTUG00000006392)	ENSSTUG00000006375	celf1 (ENSSTUG00000006265)	mrpl21 (ENSSTUG00000006197)	ENSSTUG00000006174	luzp2 (ENSSTUG00000006120)	ENSSTUG00000006087	fibinb (ENSSTUG00000006075)	bbox1 (ENSSTUG00000006068)	MADD (ENSSTUG00000005560)	nr1h3 (ENSSTUG00000005146)	arl14ep (ENSSTUG00000005123)	fshb (ENSSTUG00000005114)	KCNA4 (ENSSTUG00000005111)
Oncorhynchus	ANCESTRAL SPECIES	32	ENSGT00730000111696.a.b	ENSGT00940000153571.b.b	ENSGT00940000160226.c	ENSGT00930000151062.l	ENSGT00940000164059.f	ENSGT00940000160630.e	ENSGT00390000007055.n.b	ENSGT00940000166946.d	ENSGT00940000156124.c.a.e.b	ENSGT00940000159848.f	ENSGT00940000156152.e.a.a.c	ENSGT00390000007640.b.b.n.a.a	ENSGT00940000160394.a.f	ENSGT00390000016223.h.a.b	ENSGT00940000158446.s	ENSGT00950000182973.b.a.d ##22	ENSGT00940000161832.a.d	ENSGT00390000017480.m.a	ENSGT00970000195576	ENSGT00940000158970.w.a	ENSGT00390000005535.j	ENSGT00940000164949.d	ENSGT00390000013180.j	ENSGT01030000235035.c	ENSGT00390000007623.c.b	ENSGT00530000063582.b.g	ENSGT00940000156718.k	ENSGT00940000159068.e	ENSGT00940000156586.s.b	ENSGT00940000161285.b	ENSGT00940000162248.f
Oncorhynchus_a	ANCESTRAL SPECIES	28	ENSGT00730000111696.a.b	ENSGT00940000153571.b.b	ENSGT00940000160226.c	ENSGT00930000151062.l	ENSGT00940000164059.f	ENSGT00940000160630.e	ENSGT00390000007055.n.b	ENSGT00940000166946.d	ENSGT00940000156124.c.a.e.b	ENSGT00940000159848.f	ENSGT00940000156152.e.a.a.c	ENSGT00390000007640.b.b.n.a.a	ENSGT00940000160394.a.f	ENSGT00390000016223.h.a.b	ENSGT00940000158446.s	ENSGT00950000182973.b.a.d ##22	ENSGT00940000161832.a.d	ENSGT00390000017480.m.a	ENSGT00940000158970.w.a	ENSGT00390000005535.j	ENSGT00940000164949.d	ENSGT00390000013180.j	ENSGT01030000235035.c	ENSGT00390000007623.c.b	ENSGT00530000063582.b.g	ENSGT00940000156718.k	ENSGT00940000159068.e	ENSGT00940000156586.s.b	ENSGT00940000161285.b	ENSGT00940000162248.f	ENSGT00940000157760.g.a.a.a
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	3	npsn (ENSOTSG00005027928)	mtch2 (ENSOTSG00005027772)	psmc3 (ENSOTSG00005027740)	ENSOTSG00005027738	fbxo3 (ENSOTSG00005027735)	syt13 (ENSOTSG00005027732)	f2 (ENSOTSG00005027692)	arhgap1 (ENSOTSG00005027689)	atg13 (ENSOTSG00005027569)	zgc:110699 (ENSOTSG00005027561)	phf21aa (ENSOTSG00005027549)	DGKZ (ENSOTSG00005025596)	MDK (ENSOTSG00005025562)	ambra1a (ENSOTSG00005025536)	acp2 (ENSOTSG00005025528)	pacsin3 (ENSOTSG00005025526) ##22	ENSOTSG00005025524	c1qtnf4 (ENSOTSG00005025522)	ndufs3 (ENSOTSG00005025520)	CELF1 (ENSOTSG00005025418)	mrpl21 (ENSOTSG00005025415)	luzp2 (ENSOTSG00005025407)	ENSOTSG00005025405	fibinb (ENSOTSG00005025404)	bbox1 (ENSOTSG00005025402)	MADD (ENSOTSG00005024847)	nr1h3 (ENSOTSG00005023506)	arl14ep (ENSOTSG00005023501)	fshb (ENSOTSG00005023500)	cd151l (ENSOTSG00005023499)	TMEM138 (ENSOTSG00005023498)
Chinook salmon	MODERN SPECIES	36	mtch2 (ENSOTSG00005041930)	psmc3 (ENSOTSG00005042024)	ENSOTSG00005042573	fbxo3 (ENSOTSG00005042575)	syt13 (ENSOTSG00005042579)	f2 (ENSOTSG00005042584)	atg13 (ENSOTSG00005042743)	arhgap1 (ENSOTSG00005042793)	zgc:110699 (ENSOTSG00005042801)	phf21aa (ENSOTSG00005042802)	creb3l1 (ENSOTSG00005042803)	DGKZ (ENSOTSG00005042809)	MDK (ENSOTSG00005045632)	ambra1a (ENSOTSG00005045633)	acp2 (ENSOTSG00005045638)	pacsin3 (ENSOTSG00005045639) ##22	c1qtnf4 (ENSOTSG00005045640)	ndufs3 (ENSOTSG00005045641)	celf1 (ENSOTSG00005045644)	mrpl21 (ENSOTSG00005045700)	luzp2 (ENSOTSG00005045702)	ENSOTSG00005045703	fibinb (ENSOTSG00005045704)	bbox1 (ENSOTSG00005045705)	MADD (ENSOTSG00005045706)	arl14ep (ENSOTSG00005046056)	nr1h3 (ENSOTSG00005046058)	fshb (ENSOTSG00005046275)	cd151l (ENSOTSG00005046276)	KCNA4 (ENSOTSG00005046277)	TMEM138 (ENSOTSG00005046278)
Coho salmon	MODERN SPECIES	28	psmc3 (ENSOKIG00005022084)	cd59 (ENSOKIG00005022075)	fbxo3 (ENSOKIG00005022017)	syt13 (ENSOKIG00005021997)	znf408 (ENSOKIG00005021989)	f2 (ENSOKIG00005021909)	arhgap1 (ENSOKIG00005021873)	ENSOKIG00005021783	zgc:110699 (ENSOKIG00005021738)	phf21aa (ENSOKIG00005021711)	creb3l1 (ENSOKIG00005021681)	DGKZ (ENSOKIG00005020565)	MDK (ENSOKIG00005020482)	CHRM4 (ENSOKIG00005020467)	acp2 (ENSOKIG00005020413)	pacsin3 (ENSOKIG00005020373) ##22	c1qtnf4 (ENSOKIG00005020362)	ndufs3 (ENSOKIG00005020325)	celf1 (ENSOKIG00005020214)	mrpl21 (ENSOKIG00005020148)	ENSOKIG00005020131	luzp2 (ENSOKIG00005020103)	ENSOKIG00005020078	fibinb (ENSOKIG00005020075)	bbox1 (ENSOKIG00005020065)	MADD (ENSOKIG00005019437)	nr1h3 (ENSOKIG00005019181)	arl14ep (ENSOKIG00005019153)	KCNA4 (ENSOKIG00005019148)	CD151 (ENSOKIG00005019101)	TMEM138 (ENSOKIG00005019077)
Rainbow trout	MODERN SPECIES	18	ENSOMYG00000042471	ENSOMYG00000042452	znf408 (ENSOMYG00000042445)	f2 (ENSOMYG00000042406)	arhgap1 (ENSOMYG00000042371)	atg13 (ENSOMYG00000042276)	zgc:110699 (ENSOMYG00000042259)	phf21aa (ENSOMYG00000041071)	creb3l1 (ENSOMYG00000040934)	ENSOMYG00000055451	ENSOMYG00000065326	DGKZ (ENSOMYG00000030765)	MDK (ENSOMYG00000028528)	ambra1a (ENSOMYG00000028469)	acp2 (ENSOMYG00000028348)	ENSOMYG00000027323 ##22	c1qtnf4 (ENSOMYG00000028286)	ndufs3 (ENSOMYG00000028237)	ENSOMYG00000028214	ENSOMYG00000075561	celf1 (ENSOMYG00000027587)	ENSOMYG00000027429	ENSOMYG00000027179	ENSOMYG00000027089	fibinb (ENSOMYG00000027083)	bbox1 (ENSOMYG00000027073)	ENSOMYG00000027067	ENSOMYG00000026570	nr1h3 (ENSOMYG00000025876)	arl14ep (ENSOMYG00000025694)	fshb (ENSOMYG00000025673)
Huchen	MODERN SPECIES	4	syt13 (ENSHHUG00000024345)	ENSHHUG00000024349	znf408 (ENSHHUG00000024351)	f2 (ENSHHUG00000024352)	arhgap1 (ENSHHUG00000024356)	atg13 (ENSHHUG00000024396)	ENSHHUG00000024412	phf21aa (ENSHHUG00000024413)	ENSHHUG00000024417	creb3l1 (ENSHHUG00000024419)	DGKZ (ENSHHUG00000024424)	MDK (ENSHHUG00000024638)	CHRM4 (ENSHHUG00000024647)	ENSHHUG00000024650	acp2 (ENSHHUG00000024669)	pacsin3 (ENSHHUG00000024684) ##22	ENSHHUG00000024702	c1qtnf4 (ENSHHUG00000024719)	ndufs3 (ENSHHUG00000024724)	ENSHHUG00000024738	celf1 (ENSHHUG00000024743)	mrpl21 (ENSHHUG00000024784)	ENSHHUG00000024805	luzp2 (ENSHHUG00000024817)	ENSHHUG00000024841	ENSHHUG00000024849	fibinb (ENSHHUG00000024859)	bbox1 (ENSHHUG00000024862)	MADD (ENSHHUG00000024872)	nr1h3 (ENSHHUG00000025029)	arl14ep (ENSHHUG00000025130)
Northern pike	MODERN SPECIES	1	fbxo3 (ENSELUG00000022186)	syt13 (ENSELUG00000022205)	ENSELUG00000000952	znf408 (ENSELUG00000022222)	f2 (ENSELUG00000022267)	arhgap1 (ENSELUG00000022302)	atg13 (ENSELUG00000022362)	zgc:110699 (ENSELUG00000022387)	phf21aa (ENSELUG00000022444)	creb3l1 (ENSELUG00000022468)	DGKZ (ENSELUG00000022558)	mdk (ENSELUG00000022610)	CHRM4 (ENSELUG00000028428)	ambra1a (ENSELUG00000022836)	acp2 (ENSELUG00000022859)	pacsin3 (ENSELUG00000022905) ##22	c1qtnf4 (ENSELUG00000022925)	ndufs3 (ENSELUG00000031092)	ptpmt1 (ENSELUG00000023010)	celf1 (ENSELUG00000023173)	mrpl21 (ENSELUG00000023223)	ENSELUG00000023263	luzp2 (ENSELUG00000023303)	ENSELUG00000030219	ENSELUG00000029362	ENSELUG00000023315	bbox1 (ENSELUG00000023336)	MADD (ENSELUG00000023647)	nr1h3 (ENSELUG00000023685)	arl14ep (ENSELUG00000023739)	ENSELUG00000023750
Acanthomorphata	ANCESTRAL SPECIES	28	ENSGT00530000063074.b.a	ENSGT00390000007681.b.a.a ##15	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000167951	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00940000163716.c.b	ENSGT00940000161051.a.a.b.a	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813	ENSGT00390000011608	ENSGT00690000102225	ENSGT00390000008502	ENSGT01030000234623.a.b.b	ENSGT00940000160456	ENSGT00390000010652.C	ENSGT00950000183076.a.b.b.a.a	ENSGT00940000171332
Euacanthomorphacea	ANCESTRAL SPECIES	44	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000007681.b.a.a ##15	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00940000163716.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b	ENSGT00940000156813	ENSGT00390000011608	ENSGT00690000102225	ENSGT00390000008502	ENSGT01030000234623.a.b.b	ENSGT00940000160456	ENSGT00390000010652.C	ENSGT00950000183076.a.b.b.a.a	ENSGT00940000171332	ENSGT00390000018319.b.a
Percomorphaceae	ANCESTRAL SPECIES	15	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000007681.b.a.a ##15	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT01030000234990	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000161832.a	ENSGT00390000017480
Percomorphaceae_B	ANCESTRAL SPECIES	12	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000007681.b.a.a ##15	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT01030000234990	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000161051.a.a.b.a	ENSGT00940000163716.c.b
Ovalentaria	ANCESTRAL SPECIES	17	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000007681.b.a.a ##15	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000177294	ENSGT01030000234990	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000161051.a.a.b.a	ENSGT00940000154856.A.a.c.b
Atherinomorphae	ANCESTRAL SPECIES	8	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000007681.b.a.a ##15	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000161051.a.a.b.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b
Oryzias	ANCESTRAL SPECIES	79						ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000162993	ENSGT00390000002200.a.a
Oryzias_b	ANCESTRAL SPECIES	114														ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000177294	ENSGT00940000162993	ENSGT00390000002200.a.a
Indian medaka	MODERN SPECIES	418														SAMD4A (ENSOMEG00000019399)	ero1a (ENSOMEG00000019468)	pacsin3 (ENSOMEG00000019556) ##22	GLG1 (ENSOMEG00000000522)	aph1b (ENSOMEG00000019680)	OTOG (ENSOMEG00000019766)	myod1 (ENSOMEG00000019794)	TNNT3 (ENSOMEG00000019818)	ENSOMEG00000019829	ENSOMEG00000019845	atp6v0d1 (ENSOMEG00000019877)	ENSOMEG00000019889	ENSOMEG00000019915	ENSOMEG00000019927	ENSOMEG00000019935	ENSOMEG00000019949	ENSOMEG00000019961	ENSOMEG00000019965
Javanese ricefish	MODERN SPECIES	17	ENSOJAG00000001732	ENSOJAG00000001711	ENSOJAG00000001702	ENSOJAG00000001687	large2 (ENSOJAG00000001373)	ENSOJAG00000001291	ENSOJAG00000001288	atp6v0d1 (ENSOJAG00000000868)	ENSOJAG00000000856	ENSOJAG00000000853	ENSOJAG00000000851	TNNT3 (ENSOJAG00000000845)	myod1 (ENSOJAG00000000842)	SAMD4A (ENSOJAG00000000786)	ero1a (ENSOJAG00000000675)	pacsin3 (ENSOJAG00000000649) ##22	GLG1 (ENSOJAG00000000386)	aph1b (ENSOJAG00000000118)	ENSOJAG00000000092	ENSOJAG00000000082	ENSOJAG00000007826	arfgap2 (ENSOJAG00000007620)	pex16 (ENSOJAG00000007521)	cars1 (ENSOJAG00000005475)	crybgx (ENSOJAG00000005363)	ENSOJAG00000005332	lctla (ENSOJAG00000005207)	tipin (ENSOJAG00000005185)	dis3l (ENSOJAG00000005138)	ENSOJAG00000004737	dapk2a (ENSOJAG00000004619)
Oryzias_a	ANCESTRAL SPECIES	116						ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT00390000002049.c.b	ENSGT00940000157490
Japanese Medaka HdrR	MODERN SPECIES	17	ENSORLG00000030232	ENSORLG00000026795	ENSORLG00000022981	SLC24A1 (ENSORLG00000025324)	ENSORLG00000025274	socs4 (ENSORLG00000023960)	ENSORLG00000029540	ENSORLG00000026358	ENSORLG00000025194	ENSORLG00000029333	wdhd1 (ENSORLG00000019721)	gch1 (ENSORLG00000023979)	ENSORLG00000025298	SAMD4A (ENSORLG00000022018)	ero1a (ENSORLG00000023932)	pacsin3 (ENSORLG00000019702) ##22	ENSORLG00000029833	ENSORLG00000023229	aph1b (ENSORLG00000018404)	ENSORLG00000022342	ENSORLG00000025073	ENSORLG00000024705	ENSORLG00000028201	ENSORLG00000019694	atp6v0d1 (ENSORLG00000026745)	foxr1 (ENSORLG00000019674)	ENSORLG00000029446	ENSORLG00000019668	ENSORLG00000023713	ENSORLG00000022079	ENSORLG00000000017
Chinese medaka	MODERN SPECIES	3116																pacsin3 (ENSOSIG00000009540) ##22
Cyprinodontiformes	ANCESTRAL SPECIES	9	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000007681.b.a.a ##15	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000154856.A.a.c.b.f.a	ENSGT00940000163716.c.b.d.b.a	ENSGT00940000161832.a
Cyprinodontoidei	ANCESTRAL SPECIES	6	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000007681.b.a.a ##15	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b.d.b.a	ENSGT00940000154856.A.a.c.b.f.a	ENSGT00940000161832.a
Poeciliinae	ANCESTRAL SPECIES	13	ENSGT00940000161051.a.a.b.a	ENSGT00390000002200.a.a	ENSGT00940000162993	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000158477.a.a	ENSGT00950000182959.b.b.e.b	ENSGT00940000157490	ENSGT00390000002049.c.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00940000166202	ENSGT00390000002030.l	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b.e	ENSGT00530000062962.b.a.e	ENSGT00940000160333	ENSGT00940000156926.d	ENSGT00940000153246.a.a.a.d	ENSGT00940000160967.f	ENSGT00390000007681.b.a.a ##15	ENSGT00530000063074.b.a	ENSGT00940000159533	ENSGT00940000158651	ENSGT00940000155663.f.b	ENSGT00950000183093.B.a.b	ENSGT00390000008184
Poecilia	ANCESTRAL SPECIES	4	ENSGT00940000161051.a.a.b.a	ENSGT00390000002200.a.a	ENSGT00940000162993	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000158477.a.a	ENSGT00950000182959.b.b.e.b	ENSGT00940000157490	ENSGT00390000002049.c.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00940000166202	ENSGT00390000002030.l	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b.e	ENSGT00530000062962.b.a.e	ENSGT00940000160333	ENSGT00940000156926.d	ENSGT00940000153246.a.a.a.d	ENSGT00940000160967.f	ENSGT00390000007681.b.a.a ##15	ENSGT00530000063074.b.a	ENSGT00940000159533	ENSGT00940000158651	ENSGT01090000260059.a.b.b.a.a.a.a.a.a.b.a.g.a.a.b.a.b.b.a.a.b.b.b.a.a	ENSGT00940000155663.f.b	ENSGT00950000183093.B.a.b
NAME_6	ANCESTRAL SPECIES	92	ENSGT00940000163460.a.a.a.a.a	ENSGT00940000163460.a.a.a.a.b.a	ENSGT00940000163460.a.a.a.a.b.b	ENSGT00940000153901.a.b.a	ENSGT00960000186692	ENSGT00940000158477.a.a	ENSGT00950000182959.b.b.e.b	ENSGT00940000157490	ENSGT00390000002049.c.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00940000166202	ENSGT00390000002030.l	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT00940000155836.B	ENSGT01030000234532.B.e.b.e	ENSGT00530000062962.b.a.e	ENSGT00940000160333	ENSGT01090000260059.a.b.b.a.a.a.a.a.a.b.a.g.a.a.b.a.b.b.a.a.b.b.b.a.a.c	ENSGT01090000260059.a.b.b.a.a.a.a.a.a.b.a.g.a.a.b.a.b.b.a.a.b.b.b.a.a.d.a	ENSGT00940000156926.d	ENSGT00940000153246.a.a.a.d	ENSGT00940000160967.f	ENSGT00390000007681.b.a.a ##15	ENSGT00530000063074.b.a	ENSGT00940000159533	ENSGT00940000158651	ENSGT01090000260059.a.b.b.a.a.a.a.a.a.b.a.g.a.a.b.a.b.b.a.a.b.b.b.a.a.d.b
Amazon molly	MODERN SPECIES	350	ENSPFOG00000010010	ENSPFOG00000009981	ENSPFOG00000009947	ENSPFOG00000022109	TNNT3 (ENSPFOG00000009845)	myod1 (ENSPFOG00000009843)	OTOG (ENSPFOG00000009345)	aph1b (ENSPFOG00000009273)	tnni2b.1 (ENSPFOG00000009219)	socs4 (ENSPFOG00000009206)	ENSPFOG00000022454	wdhd1 (ENSPFOG00000008914)	gch1 (ENSPFOG00000008835)	SAMD4A (ENSPFOG00000008620)	ero1a (ENSPFOG00000008385)	pacsin3 (ENSPFOG00000008277) ##22	glg1b (ENSPFOG00000007965)	dennd4a (ENSPFOG00000006791)	ENSPFOG00000006545	HACD3 (ENSPFOG00000006432)	slc22a18 (ENSPFOG00000006271)	ENSPFOG00000006238	ENSPFOG00000006219	NR2E3 (ENSPFOG00000006106)	ENSPFOG00000005972	ENSPFOG00000020325	mpped2a (ENSPFOG00000005905) ##15	zdhhc13 (ENSPFOG00000005728)	csrp3 (ENSPFOG00000023629)	e2f8 (ENSPFOG00000005584)	ENSPFOG00000000656
Sailfin molly	MODERN SPECIES	566														ENSPLAG00000003352	ero1a (ENSPLAG00000003361)	pacsin3 (ENSPLAG00000003395) ##22	glg1b (ENSPLAG00000003435)	dennd4a (ENSPLAG00000003539)	SLC24A1 (ENSPLAG00000000057)	HACD3 (ENSPLAG00000003583)	slc22a18 (ENSPLAG00000003591)	ENSPLAG00000003596	ENSPLAG00000003597	ENSPLAG00000003612	NR2E3 (ENSPLAG00000003619)	ENSPLAG00000003638	ENSPLAG00000003653
Guppy	MODERN SPECIES	455	ENSPREG00000018416	ENSPREG00000018424	ENSPREG00000018428	TNNT3 (ENSPREG00000018442)	myod1 (ENSPREG00000018453)	ENSPREG00000018462	aph1b (ENSPREG00000018474)	tnni2b.1 (ENSPREG00000018498)	socs4 (ENSPREG00000018515)	wdhd1 (ENSPREG00000018533)	gch1 (ENSPREG00000018570)	SAMD4A (ENSPREG00000018648)	ENSPREG00000018696	ENSPREG00000018709	ero1a (ENSPREG00000018741)	pacsin3 (ENSPREG00000018797) ##22	glg1b (ENSPREG00000018842)	dennd4a (ENSPREG00000018994)	SLC24A1 (ENSPREG00000019149)	HACD3 (ENSPREG00000019209)	slc22a18 (ENSPREG00000019227)	ENSPREG00000019254	ENSPREG00000019267	ENSPREG00000019289	mpped2a (ENSPREG00000019313) ##15	zdhhc13 (ENSPREG00000019340)	csrp3 (ENSPREG00000019363)	e2f8 (ENSPREG00000019385)	NAV2 (ENSPREG00000019505)	ENSPREG00000019829	dbx1a (ENSPREG00000019836)
Platyfish	MODERN SPECIES	18	ENSXMAG00000028813	ENSXMAG00000026706	ENSXMAG00000029307	ENSXMAG00000028640	TNNT3 (ENSXMAG00000027991)	myod1 (ENSXMAG00000009780)	OTOG (ENSXMAG00000009782)	aph1b (ENSXMAG00000009804)	tnni2b.1 (ENSXMAG00000009816)	socs4 (ENSXMAG00000020189)	wdhd1 (ENSXMAG00000009823)	gch1 (ENSXMAG00000009846)	SAMD4A (ENSXMAG00000009864)	ENSXMAG00000023464	ero1a (ENSXMAG00000029457)	pacsin3 (ENSXMAG00000022122) ##22	glg1b (ENSXMAG00000010415)	dennd4a (ENSXMAG00000010376)	SLC24A1 (ENSXMAG00000010371)	HACD3 (ENSXMAG00000010327)	slc22a18 (ENSXMAG00000010324)	ENSXMAG00000029990	ENSXMAG00000027678	NR2E3 (ENSXMAG00000010311)	ENSXMAG00000010292	ENSXMAG00000019869	mpped2a (ENSXMAG00000010273) ##15	zdhhc13 (ENSXMAG00000010253)	csrp3 (ENSXMAG00000027973)	e2f8 (ENSXMAG00000010237)	ENSXMAG00000024557
NAME_4	ANCESTRAL SPECIES	66	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000007681.b.a.a ##15	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030.n	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a.a.a	ENSGT00940000163460.a.a.a.a.a.b	ENSGT00940000162993	ENSGT00390000002200.a.a
Sheepshead minnow	MODERN SPECIES	198	zdhhc13 (ENSCVAG00000004950)	mpped2a (ENSCVAG00000004974) ##15	ENSCVAG00000005070	ENSCVAG00000005078	ENSCVAG00000005151	NR2E3 (ENSCVAG00000005210)	slc22a18 (ENSCVAG00000005226)	HACD3 (ENSCVAG00000005529)	SLC24A1 (ENSCVAG00000005559)	dennd4a (ENSCVAG00000005774)	socs4 (ENSCVAG00000005809)	wdhd1 (ENSCVAG00000006106)	gch1 (ENSCVAG00000006132)	SAMD4A (ENSCVAG00000006183)	ero1a (ENSCVAG00000006196)	pacsin3 (ENSCVAG00000006247) ##22	glg1b (ENSCVAG00000006375)	tnni2b.1 (ENSCVAG00000006390)	aph1b (ENSCVAG00000006407)	OTOG (ENSCVAG00000000628)	myod1 (ENSCVAG00000006504)	TNNT3 (ENSCVAG00000006519)	ENSCVAG00000006531	ENSCVAG00000006553	ENSCVAG00000006565	ENSCVAG00000006585	foxr1 (ENSCVAG00000006599)	atp6v0d1 (ENSCVAG00000006618)	ENSCVAG00000006642	ENSCVAG00000006645	ENSCVAG00000006653
Mummichog	MODERN SPECIES	354									dennd4a (ENSFHEG00000009121)	socs4 (ENSFHEG00000009130)	ENSFHEG00000009177	ENSFHEG00000009185	gch1 (ENSFHEG00000009194)	SAMD4A (ENSFHEG00000009300)	ero1a (ENSFHEG00000009396)	pacsin3 (ENSFHEG00000009453) ##22	glg1b (ENSFHEG00000009842)	tnni2b.1 (ENSFHEG00000009882)	aph1b (ENSFHEG00000009933)	OTOG (ENSFHEG00000010073)	myod1 (ENSFHEG00000010084)	ENSFHEG00000000227	ENSFHEG00000010124	ENSFHEG00000010134	ENSFHEG00000010171
Aplocheiloidei	ANCESTRAL SPECIES	39	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000007681.b.a.a ##15	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000154856.A.a.c.b.f.a	ENSGT00940000163716.c.b.d.b.a	ENSGT00940000161832.a
Mangrove rivulus	MODERN SPECIES	94	zdhhc13 (ENSKMAG00000020369)	mpped2a (ENSKMAG00000020431) ##15	ENSKMAG00000020454	ENSKMAG00000020462	NR2E3 (ENSKMAG00000020481)	slc22a18 (ENSKMAG00000020503)	HACD3 (ENSKMAG00000020519)	SAMD4A (ENSKMAG00000020543)	gch1 (ENSKMAG00000020574)	wdhd1 (ENSKMAG00000020604)	socs4 (ENSKMAG00000020674)	ENSKMAG00000020680	dennd4a (ENSKMAG00000020759)	SLC24A1 (ENSKMAG00000020920)	ero1a (ENSKMAG00000020950)	pacsin3 (ENSKMAG00000021024) ##22	glg1b (ENSKMAG00000021075)	tnni2b.1 (ENSKMAG00000021151)	aph1b (ENSKMAG00000021168)	OTOG (ENSKMAG00000021189)	myod1 (ENSKMAG00000021238)	TNNT3 (ENSKMAG00000021246)	ENSKMAG00000000140	ENSKMAG00000000158	ENSKMAG00000000224	foxr1 (ENSKMAG00000000233)	atp6v0d1 (ENSKMAG00000000274)
Turquoise killifish	MODERN SPECIES	1616	MPPED2 (ENSNFUG00015004145) ##15	ENSNFUG00015004153	STRA6 (ENSNFUG00015004168)	NR2E3 (ENSNFUG00015004197)	SLC22A18 (ENSNFUG00015004215)	PTPLAD1 (ENSNFUG00015004247)	SLC24A1 (ENSNFUG00015004331)	dennd4a (ENSNFUG00015004412)	ENSNFUG00015004502	socs4 (ENSNFUG00015004506)	WDHD1 (ENSNFUG00015004515)	GCH1 (ENSNFUG00015004539)	SAMD4A (ENSNFUG00015004563)	PACSIN3 (ENSNFUG00015004592)	ENSNFUG00015004640	pacsin3 (ENSNFUG00015004647) ##22	GLG1 (ENSNFUG00015004673)	NAV2 (ENSNFUG00015005223)	OLA.2304 (ENSNFUG00015006227)	HTATIP2 (ENSNFUG00015006232)	PRMT3 (ENSNFUG00015006258)	slc6a5 (ENSNFUG00015006314)	ENSNFUG00015006470	NELL1 (ENSNFUG00015006562)	ENSNFUG00015007327	ENSNFUG00015007332	ENSNFUG00015007333	ENSNFUG00015007337	ENSNFUG00015007340	CABZ01083440.1 (ENSNFUG00015007483)	ENSNFUG00015008690
Ovalentaria_B	ANCESTRAL SPECIES	10	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000007681.b.a.a ##15	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT01030000234990	ENSGT00940000153901.a.b.a	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000161051.a.a.b.a	ENSGT00940000154856.A.a.c.b
Pomacentridae	ANCESTRAL SPECIES	15	ENSGT00530000063074.b.a	ENSGT00390000007681.b.a.a.p ##15	ENSGT00390000007681.b.a.a.o ##15	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000177294	ENSGT01030000234990	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000161051.a.a.b.a	ENSGT00940000161832.a
Pomacentridae_A	ANCESTRAL SPECIES	66	ENSGT00530000063074.b.a	ENSGT00390000007681.b.a.a.p ##15	ENSGT00390000007681.b.a.a.o ##15	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b
Amphiprion	ANCESTRAL SPECIES	42	ENSGT00530000063074.b.a	ENSGT00940000177702.a.a	ENSGT00390000007681.b.a.a.o ##15	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT00390000002200.a.a	ENSGT00940000162993	ENSGT00940000163460.a.a.a.a	ENSGT00980000199380.a.b	ENSGT00960000186692	ENSGT00940000158477.a.a	ENSGT00950000182959.b.b.e.b	ENSGT00940000157490	ENSGT00390000002049.c.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b
Clown anemonefish	MODERN SPECIES	2110														SAMD4A (ENSAOCG00000007644)	ero1a (ENSAOCG00000007591)	pacsin3 (ENSAOCG00000007521) ##22	glg1b (ENSAOCG00000007470)	atp6v0d1 (ENSAOCG00000007398)	foxr1 (ENSAOCG00000007364)	ENSAOCG00000007307	ENSAOCG00000007292
Orange clownfish	MODERN SPECIES		zdhhc13 (ENSAPEG00000000146)	ENSAPEG00000000147	mpped2a (ENSAPEG00000000148) ##15	ENSAPEG00000000149	ENSAPEG00000000150	NR2E3 (ENSAPEG00000000151)	slc22a18 (ENSAPEG00000000152)	HACD3 (ENSAPEG00000000153)	SLC24A1 (ENSAPEG00000000154)	dennd4a (ENSAPEG00000000155)	socs4 (ENSAPEG00000000156)	wdhd1 (ENSAPEG00000000157)	gch1 (ENSAPEG00000000158)	SAMD4A (ENSAPEG00000000159)	ero1a (ENSAPEG00000000160)	pacsin3 (ENSAPEG00000000161) ##22	ENSAPEG00000000162	glg1b (ENSAPEG00000000163)	atp6v0d1 (ENSAPEG00000000164)	foxr1 (ENSAPEG00000000165)	ENSAPEG00000000166	ENSAPEG00000000167	ENSAPEG00000000168	TNNT3 (ENSAPEG00000000169)	myod1 (ENSAPEG00000000170)	OTOG (ENSAPEG00000000171)	aph1b (ENSAPEG00000000173)	tnni2b.1 (ENSAPEG00000000174)	ENSAPEG00000000175	ENSAPEG00000000176	c1qtnf4 (ENSAPEG00000000177)
Spiny chromis	MODERN SPECIES	475			ENSAPOG00000001388	ENSAPOG00000001400	NR2E3 (ENSAPOG00000001413)	slc22a18 (ENSAPOG00000001425)	HACD3 (ENSAPOG00000001430)	SLC24A1 (ENSAPOG00000001442)	dennd4a (ENSAPOG00000001522)	ENSAPOG00000001540	socs4 (ENSAPOG00000001542)	wdhd1 (ENSAPOG00000001560)	gch1 (ENSAPOG00000001570)	SAMD4A (ENSAPOG00000001579)	ero1a (ENSAPOG00000001586)	pacsin3 (ENSAPOG00000001600) ##22
Bicolor damselfish	MODERN SPECIES	1388														SAMD4A (ENSSPAG00000007623)	ero1a (ENSSPAG00000007676)	pacsin3 (ENSSPAG00000007712) ##22	glg1b (ENSSPAG00000007737)	TNNI2 (ENSSPAG00000007805)	aph1b (ENSSPAG00000007820)
Cichlidae	ANCESTRAL SPECIES	11	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000007681.b.a.a ##15	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT01030000234990	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000153901.a.b.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	13	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000007681.b.a.a ##15	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT01030000234990	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000153901.a.b.a
Nile tilapia	MODERN SPECIES		ENSONIG00000007114	ENSONIG00000007124	mpped2a (ENSONIG00000007125) ##15	zdhhc13 (ENSONIG00000007127)	csrp3 (ENSONIG00000007132)	e2f8 (ENSONIG00000007135)	NAV2 (ENSONIG00000007138)	dbx1a (ENSONIG00000007144)	pdcd7 (ENSONIG00000032653)	UBAP1L (ENSONIG00000031699)	KBTBD13 (ENSONIG00000020976)	rasl12 (ENSONIG00000034413)	uqcrfs1 (ENSONIG00000010416)	mtfmt (ENSONIG00000014631)	ENSONIG00000038233	pacsin3 (ENSONIG00000008282) ##22	ENSONIG00000042169	ENSONIG00000015033	ENSONIG00000015031	mesd (ENSONIG00000027733)	ENSONIG00000040573	CEMIP (ENSONIG00000001973)	ENSONIG00000036152	abhd17c (ENSONIG00000040244)	ENSONIG00000028423	arnt2 (ENSONIG00000001978)	ENSONIG00000030455	ENSONIG00000034177	ENSONIG00000042755	fah (ENSONIG00000037906)	lto1 (ENSONIG00000028091)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	32	ENSGT00390000014065	ENSGT00390000017480	ENSGT00940000161832.a	ENSGT00940000161051.a.a.b.a.o.b	ENSGT00940000163716.c.b.b	ENSGT00390000002200.a.a	ENSGT00940000162993	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00960000186692
Haplochromini	ANCESTRAL SPECIES	34	ENSGT00390000014065	ENSGT00390000017480	ENSGT00940000161832.a	ENSGT00940000163716.c.b.a	ENSGT00940000163716.c.b.b	ENSGT00390000002200.a.a	ENSGT00940000162993	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030.o	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT01030000234990	ENSGT00940000177294	ENSGT00940000153901.a.b.a
Burton s mouthbrooder	MODERN SPECIES	684								HACD3 (ENSHBUG00000016439)	SLC24A1 (ENSHBUG00000016373)	dennd4a (ENSHBUG00000016303)	socs4 (ENSHBUG00000015873)	ENSHBUG00000015846	SAMD4A (ENSHBUG00000015778)	gch1 (ENSHBUG00000015632)	ero1a (ENSHBUG00000015614)	pacsin3 (ENSHBUG00000015595) ##22	glg1b (ENSHBUG00000015542)	ENSHBUG00000015470	aph1b (ENSHBUG00000015397)	OTOG (ENSHBUG00000015356)	myod1 (ENSHBUG00000015165)	TNNT3 (ENSHBUG00000015184)	ENSHBUG00000015145	ENSHBUG00000015130
Haplochromini_A	ANCESTRAL SPECIES	39	ENSGT00390000014065	ENSGT00390000017480	ENSGT00940000161832.a	ENSGT00940000163716.c.b.a	ENSGT00940000163716.c.b.b	ENSGT00390000002200.a.a	ENSGT00940000162993	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030.o	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT00940000177294	ENSGT00490000044642.a.a.a.a.a.b.a.a.b.h
P. nyererei	MODERN SPECIES	604									SLC24A1 (ENSPNYG00000018952)	dennd4a (ENSPNYG00000018998)	socs4 (ENSPNYG00000019064)	wdhd1 (ENSPNYG00000019115)	gch1 (ENSPNYG00000019405)	SAMD4A (ENSPNYG00000019428)	ero1a (ENSPNYG00000019483)	pacsin3 (ENSPNYG00000019526) ##22	glg1b (ENSPNYG00000019577)	TNNI2 (ENSPNYG00000019672)	aph1b (ENSPNYG00000019699)	OTOG (ENSPNYG00000019728)	myod1 (ENSPNYG00000019848)	TNNT3 (ENSPNYG00000019870)	ENSPNYG00000020016	ENSPNYG00000020046	ENSPNYG00000020055	ENSPNYG00000020071
Haplochromini_B	ANCESTRAL SPECIES	56	ENSGT00390000014065	ENSGT00390000017480	ENSGT00940000161832.a	ENSGT00940000161051.a.a.b.a.o.b	ENSGT01020000230593.B.a.a.b.a	ENSGT00390000002200.a.a	ENSGT00940000162993	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202.c	ENSGT00390000002030.o	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT00940000177294	ENSGT00490000044642.a.a.a.a.a.b.a.a.b.h
Zebra mbuna	MODERN SPECIES	1091	ptpmt1 (ENSMZEG00005015728)	ndufs3 (ENSMZEG00005015705)	c1qtnf4 (ENSMZEG00005015697)	ENSMZEG00005015677	ENSMZEG00005015666	atp6v0d1 (ENSMZEG00005015650)	foxr1 (ENSMZEG00005015635)	HACD3 (ENSMZEG00005015600)	SLC24A1 (ENSMZEG00005015586)	dennd4a (ENSMZEG00005015311)	socs4 (ENSMZEG00005015254)	wdhd1 (ENSMZEG00005015228)	gch1 (ENSMZEG00005015209)	SAMD4A (ENSMZEG00005015188)	ero1a (ENSMZEG00005015175)	pacsin3 (ENSMZEG00005015162) ##22	glg1b (ENSMZEG00005015115)	TNNI2 (ENSMZEG00005015093)	aph1b (ENSMZEG00005015081)	OTOG (ENSMZEG00005015041)	myod1 (ENSMZEG00005015006)	TNNT3 (ENSMZEG00005014820)	ENSMZEG00005014810	ENSMZEG00005014803	ENSMZEG00005014794	ENSMZEG00005014786	ENSMZEG00005014779	ENSMZEG00005014767	slc22a18 (ENSMZEG00005014753)	NR2E3 (ENSMZEG00005014737)	ENSMZEG00005014718
Eastern happy	MODERN SPECIES		ENSACLG00000008751	ENSACLG00000008756	atp6v0d1 (ENSACLG00000008763)	foxr1 (ENSACLG00000008771)	ENSACLG00000008774	ENSACLG00000008777	HACD3 (ENSACLG00000008783)	SLC24A1 (ENSACLG00000008823)	ENSACLG00000008842	dennd4a (ENSACLG00000008854)	socs4 (ENSACLG00000009024)	wdhd1 (ENSACLG00000009036)	gch1 (ENSACLG00000009069)	SAMD4A (ENSACLG00000009089)	ero1a (ENSACLG00000009207)	pacsin3 (ENSACLG00000009240) ##22	glg1b (ENSACLG00000009342)	tnni2b.1 (ENSACLG00000009427)	aph1b (ENSACLG00000009435)	OTOG (ENSACLG00000009449)	myod1 (ENSACLG00000009487)	TNNT3 (ENSACLG00000009498)	ENSACLG00000009574	ENSACLG00000009580	ENSACLG00000009585	ENSACLG00000010176	celf1 (ENSACLG00000010181)	mtfmt (ENSACLG00000010234)	uqcrfs1 (ENSACLG00000010241)	rasl12 (ENSACLG00000010244)	ENSACLG00000010254
Lyretail cichlid	MODERN SPECIES	412	prc1b (ENSNBRG00000010539)	ptpmt1 (ENSNBRG00000010529)	ndufs3 (ENSNBRG00000010499)	c1qtnf4 (ENSNBRG00000010484)	ENSNBRG00000010454	atp6v0d1 (ENSNBRG00000010437)	ENSNBRG00000010426	HACD3 (ENSNBRG00000010400)	SLC24A1 (ENSNBRG00000010383)	ENSNBRG00000010370	socs4 (ENSNBRG00000010334)	wdhd1 (ENSNBRG00000010071)	gch1 (ENSNBRG00000010039)	SAMD4A (ENSNBRG00000009997)	ero1a (ENSNBRG00000009955)	pacsin3 (ENSNBRG00000009877) ##22	glg1b (ENSNBRG00000009842)	ENSNBRG00000009822	aph1b (ENSNBRG00000009791)	OTOG (ENSNBRG00000009698)	myod1 (ENSNBRG00000009675)	TNNT3 (ENSNBRG00000009613)	ENSNBRG00000009599	ENSNBRG00000009589
Midas cichlid	MODERN SPECIES	964								HACD3 (ENSACIG00000021659)	SLC24A1 (ENSACIG00000021640)	dennd4a (ENSACIG00000021585)	socs4 (ENSACIG00000021569)	wdhd1 (ENSACIG00000021530)	gch1 (ENSACIG00000021478)	SAMD4A (ENSACIG00000021444)	ero1a (ENSACIG00000021417)	pacsin3 (ENSACIG00000021397) ##22	glg1b (ENSACIG00000021354)	TNNI2 (ENSACIG00000021349)
Percomorphaceae_C	ANCESTRAL SPECIES	11	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000007681.b.a.a ##15	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT00960000186692	ENSGT00940000177294	ENSGT01030000234990	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b
Eupercaria	ANCESTRAL SPECIES	14	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000007681.b.a.a ##15	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT00960000186692	ENSGT00940000177294	ENSGT01030000234990	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b
Tetraodontidae	ANCESTRAL SPECIES	4	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000007681.b.a.a ##15	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000154856.A.a.c.b	ENSGT00940000161051.a.a.b.a.c	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065
Tetraodon	MODERN SPECIES	20	e2f8 (ENSTNIG00000009615)	csrp3 (ENSTNIG00000009616)	zdhhc13 (ENSTNIG00000002121)	mpped2a (ENSTNIG00000005247) ##15	ENSTNIG00000005152	ENSTNIG00000005151	NR2E3 (ENSTNIG00000005150)	HACD3 (ENSTNIG00000001644)	SLC24A1 (ENSTNIG00000018806)	dennd4a (ENSTNIG00000018805)	socs4 (ENSTNIG00000002432)	wdhd1 (ENSTNIG00000018803)	gch1 (ENSTNIG00000018802)	SAMD4A (ENSTNIG00000018801)	ero1a (ENSTNIG00000018800)	pacsin3 (ENSTNIG00000018799) ##22	glg1b (ENSTNIG00000018797)	tnni2b.1 (ENSTNIG00000018796)	aph1b (ENSTNIG00000018795)	OTOG (ENSTNIG00000018794)	myod1 (ENSTNIG00000018793)	TNNT3 (ENSTNIG00000018792)	ENSTNIG00000018791	foxr1 (ENSTNIG00000018790)	atp6v0d1 (ENSTNIG00000018789)	ENSTNIG00000018788	ENSTNIG00000018787	ENSTNIG00000018786	c1qtnf4 (ENSTNIG00000018785)	ndufs3 (ENSTNIG00000018784)	prc1b (ENSTNIG00000018783)
Fugu	MODERN SPECIES	4	csrp3 (ENSTRUG00000015766)	zdhhc13 (ENSTRUG00000015707)	mpped2a (ENSTRUG00000015686) ##15	ENSTRUG00000020949	ENSTRUG00000015637	NR2E3 (ENSTRUG00000015582)	slc22a18 (ENSTRUG00000015561)	HACD3 (ENSTRUG00000015510)	SLC24A1 (ENSTRUG00000015482)	dennd4a (ENSTRUG00000015436)	socs4 (ENSTRUG00000015433)	wdhd1 (ENSTRUG00000015390)	gch1 (ENSTRUG00000015367)	SAMD4A (ENSTRUG00000015288)	ero1a (ENSTRUG00000015220)	pacsin3 (ENSTRUG00000015184) ##22	glg1b (ENSTRUG00000015083)	tnni2b.1 (ENSTRUG00000015041)	aph1b (ENSTRUG00000014985)	myod1 (ENSTRUG00000014891)	TNNT3 (ENSTRUG00000014861)	ENSTRUG00000021513	ENSTRUG00000031897	foxr1 (ENSTRUG00000014847)	ENSTRUG00000014811	ENSTRUG00000014775	fgc6ast1 (ENSTRUG00000014710)	c1qtnf4 (ENSTRUG00000030667)	ndufs3 (ENSTRUG00000014669)	ptpmt1 (ENSTRUG00000021942)	prc1b (ENSTRUG00000014588)
Eupecaria_A	ANCESTRAL SPECIES	15	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000007681.b.a.a ##15	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT00960000186692	ENSGT00940000177294	ENSGT01030000234990	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b
Ballan wrasse	MODERN SPECIES	142				ENSLBEG00000024342	ENSLBEG00000024389	NR2E3 (ENSLBEG00000024468)	slc22a18 (ENSLBEG00000024489)	HACD3 (ENSLBEG00000024570)	SLC24A1 (ENSLBEG00000024638)	dennd4a (ENSLBEG00000024700)	socs4 (ENSLBEG00000024771)	wdhd1 (ENSLBEG00000024847)	gch1 (ENSLBEG00000024950)	SAMD4A (ENSLBEG00000025062)	ero1a (ENSLBEG00000025153)	pacsin3 (ENSLBEG00000025230) ##22	glg1b (ENSLBEG00000025302)	tnni2b.1 (ENSLBEG00000025369)	aph1b (ENSLBEG00000025401)	ENSLBEG00000025428	ENSLBEG00000025444	ENSLBEG00000025461	myod1 (ENSLBEG00000025479)	TNNT3 (ENSLBEG00000025517)	ENSLBEG00000025581	ENSLBEG00000025615	foxr1 (ENSLBEG00000025631)	atp6v0d1 (ENSLBEG00000025653)	ENSLBEG00000025684	ENSLBEG00000025703	ENSLBEG00000025718
Eupecaria_B	ANCESTRAL SPECIES	15	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000007681.b.a.a ##15	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT00960000186692	ENSGT00940000177294	ENSGT01030000234990	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b
Perciformes	ANCESTRAL SPECIES	15	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000007681.b.a.a ##15	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000177294	ENSGT01030000234990	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a
Perciformes_a	ANCESTRAL SPECIES	13	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000007681.b.a.a ##15	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000177294	ENSGT01030000234990	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000161832.a	ENSGT00390000017480
Pike perch	MODERN SPECIES	42	zdhhc13 (ENSSLUG00000013411)	slc18b1 (ENSSLUG00000014147)	mpped2a (ENSSLUG00000014219) ##15	ENSSLUG00000014232	ENSSLUG00000014234	NR2E3 (ENSSLUG00000014245)	slc22a18 (ENSSLUG00000014266)	HACD3 (ENSSLUG00000014295)	SLC24A1 (ENSSLUG00000014312)	dennd4a (ENSSLUG00000014340)	socs4 (ENSSLUG00000014357)	wdhd1 (ENSSLUG00000014371)	gch1 (ENSSLUG00000014411)	SAMD4A (ENSSLUG00000014423)	ero1a (ENSSLUG00000014452)	pacsin3 (ENSSLUG00000014868) ##22	glg1b (ENSSLUG00000014927)	tnni2b.1 (ENSSLUG00000015288)	aph1b (ENSSLUG00000015292)	OTOG (ENSSLUG00000015304)	myod1 (ENSSLUG00000015360)	TNNT3 (ENSSLUG00000015377)	ENSSLUG00000015385	foxr1 (ENSSLUG00000015392)	atp6v0d1 (ENSSLUG00000015419)	ENSSLUG00000015470	ENSSLUG00000015477	ENSSLUG00000015482	c1qtnf4 (ENSSLUG00000015485)	ndufs3 (ENSSLUG00000015488)	ptpmt1 (ENSSLUG00000015495)
Channel bull blenny	MODERN SPECIES	17	csrp3 (ENSCGOG00000001159)	zdhhc13 (ENSCGOG00000001121)	mpped2a (ENSCGOG00000001116) ##15	ENSCGOG00000001115	ENSCGOG00000001114	NR2E3 (ENSCGOG00000001111)	slc22a18 (ENSCGOG00000001108)	HACD3 (ENSCGOG00000001094)	SLC24A1 (ENSCGOG00000001085)	dennd4a (ENSCGOG00000000880)	socs4 (ENSCGOG00000000851)	wdhd1 (ENSCGOG00000000697)	gch1 (ENSCGOG00000000646)	SAMD4A (ENSCGOG00000000470)	ero1a (ENSCGOG00000000411)	pacsin3 (ENSCGOG00000000368) ##22	glg1b (ENSCGOG00000000287)	tnni2b.1 (ENSCGOG00000000244)	aph1b (ENSCGOG00000000232)	OTOG (ENSCGOG00000000174)	myod1 (ENSCGOG00000000126)	TNNT3 (ENSCGOG00000000102)	ENSCGOG00000000089	ENSCGOG00000000084	ENSCGOG00000000074	ENSCGOG00000019539	foxr1 (ENSCGOG00000019537)	atp6v0d1 (ENSCGOG00000019523)	ENSCGOG00000019501	c1qtnf4 (ENSCGOG00000019498)	ndufs3 (ENSCGOG00000019478)
Cottioidei	ANCESTRAL SPECIES	13										ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT01030000234990	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b
Lumpfish	MODERN SPECIES	18	ENSCLMG00005003976	ENSCLMG00005003975	TSPAN18 (ENSCLMG00005003451)	ENSCLMG00005003428	ENSCLMG00005003412	ENSCLMG00005003411	ENSCLMG00005003410	ENSCLMG00005003408	ENSCLMG00005003406	ENSCLMG00005003404	socs4 (ENSCLMG00005003403)	wdhd1 (ENSCLMG00005003392)	gch1 (ENSCLMG00005003387)	SAMD4A (ENSCLMG00005003385)	ero1a (ENSCLMG00005003328)	pacsin3 (ENSCLMG00005003323) ##22	glg1b (ENSCLMG00005003173)	tnni2b.1 (ENSCLMG00005003095)	aph1b (ENSCLMG00005003089)	OTOG (ENSCLMG00005003067)	MYOD1 (ENSCLMG00005003056)	TNNT3 (ENSCLMG00005003049)	ENSCLMG00005003043	ENSCLMG00005003037	ENSCLMG00005003032	foxr1 (ENSCLMG00005003021)	atp6v0d1 (ENSCLMG00005002959)	ENSCLMG00005002921	ENSCLMG00005002881	c1qtnf4 (ENSCLMG00005002868)	ENSCLMG00005002846
Stickleback	MODERN SPECIES	1	pex16 (ENSGACG00000017273)	cars1 (ENSGACG00000017279)	ccnb2 (ENSGACG00000017292)	crybgx (ENSGACG00000017294)	ENSGACG00000017296	ENSGACG00000017297	ENSGACG00000017302	dapk2a (ENSGACG00000017307)	ENSGACG00000017310	ENSGACG00000017313	dis3l (ENSGACG00000017315)	socs4 (ENSGACG00000017319)	wdhd1 (ENSGACG00000017321)	gch1 (ENSGACG00000017325)	ENSGACG00000017331	pacsin3 (ENSGACG00000017333) ##22	GLG1 (ENSGACG00000017337)	tnni2b.1 (ENSGACG00000017338)	aph1b (ENSGACG00000017339)	OTOG (ENSGACG00000017343)	myod1 (ENSGACG00000017350)	TNNT3 (ENSGACG00000017352)	ENSGACG00000017354	foxr1 (ENSGACG00000017356)	atp6v0d1 (ENSGACG00000017358)	ENSGACG00000017378	c1qtnf4 (ENSGACG00000017381)	ndufs3 (ENSGACG00000017384)	ptpmt1 (ENSGACG00000017391)	prc1b (ENSGACG00000017394)	vps33b (ENSGACG00000017403)
Eupecaria_C	ANCESTRAL SPECIES	11	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000007681.b.a.a ##15	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000161051.a.a.b.a.c	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b
Gilthead seabream	MODERN SPECIES	18	zdhhc13 (ENSSAUG00010011756)	mpped2a (ENSSAUG00010011765) ##15	ENSSAUG00010011775	ENSSAUG00010011783	NR2E3 (ENSSAUG00010011796)	slc22a18 (ENSSAUG00010011801)	HACD3 (ENSSAUG00010011805)	SLC24A1 (ENSSAUG00010011812)	dennd4a (ENSSAUG00010011836)	GFUS (ENSSAUG00010012034)	socs4 (ENSSAUG00010012526)	wdhd1 (ENSSAUG00010012535)	gch1 (ENSSAUG00010012542)	SAMD4A (ENSSAUG00010012545)	ero1a (ENSSAUG00010012573)	pacsin3 (ENSSAUG00010012825) ##22	glg1b (ENSSAUG00010012845)	TNNI2 (ENSSAUG00010012899)	aph1b (ENSSAUG00010012901)	myod1 (ENSSAUG00010012905)	TNNT3 (ENSSAUG00010012907)	ENSSAUG00010012908	ENSSAUG00010012909	ENSSAUG00010012913	ENSSAUG00010012915	ppef1 (ENSSAUG00010012918)	ENSSAUG00010012923	ENSSAUG00010012925	cdkl5 (ENSSAUG00010012926)	SCML2 (ENSSAUG00010012942)	NHS (ENSSAUG00010012957)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	7	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000007681.b.a.a ##15	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a	ENSGT00940000177294	ENSGT00960000186692	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a
Large yellow croaker	MODERN SPECIES	480	e2f8 (ENSLCRG00005002371)	zdhhc13 (ENSLCRG00005002405)	csrp3 (ENSLCRG00005002604)	mpped2a (ENSLCRG00005002608) ##15	ENSLCRG00005002609	ENSLCRG00005002613	NR2E3 (ENSLCRG00005002635)	slc22a18 (ENSLCRG00005002671)	HACD3 (ENSLCRG00005002710)	SLC24A1 (ENSLCRG00005002811)	dennd4a (ENSLCRG00005002845)	socs4 (ENSLCRG00005002924)	gch1 (ENSLCRG00005002929)	SAMD4A (ENSLCRG00005002932)	ero1a (ENSLCRG00005002944)	pacsin3 (ENSLCRG00005002960) ##22	glg1b (ENSLCRG00005002969)	tnni2b.1 (ENSLCRG00005003007)	aph1b (ENSLCRG00005003009)	aph1b (ENSLCRG00005003014)	OTOG (ENSLCRG00005003017)	nqo1 (ENSLCRG00005003029)	ENSLCRG00005003039	ENSLCRG00005003042	ENSLCRG00005003045	ENSLCRG00005003048	rpl12 (ENSLCRG00005003051)	pole3 (ENSLCRG00005003071)	kmt5b (ENSLCRG00005003072)	ccnb2 (ENSLCRG00005003075)	cd82a (ENSLCRG00005003078)
European seabass	MODERN SPECIES	18	zdhhc13 (ENSDLAG00005016050)	mpped2a (ENSDLAG00005017487) ##15	ENSDLAG00005026438	ENSDLAG00005031744	ENSDLAG00005017548	ENSDLAG00005017617	ENSDLAG00005030198	HACD3 (ENSDLAG00005032938)	SLC24A1 (ENSDLAG00005029857)	DENND4A (ENSDLAG00005017811)	socs4 (ENSDLAG00005031594)	wdhd1 (ENSDLAG00005018377)	gch1 (ENSDLAG00005031132)	SAMD4A (ENSDLAG00005018542)	ero1a (ENSDLAG00005018493)	ENSDLAG00005018657 ##22	ENSDLAG00005018712	ENSDLAG00005019543	ENSDLAG00005026766	ENSDLAG00005019564	ENSDLAG00005034786	ENSDLAG00005019645	ENSDLAG00005019721	ENSDLAG00005032447	ENSDLAG00005028426	ENSDLAG00005019755	ENSDLAG00005019779	ENSDLAG00005032776	ENSDLAG00005026741	ENSDLAG00005005513	ENSDLAG00005019814
Percomorphaceae_D	ANCESTRAL SPECIES	11	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000007681.b.a.a ##15	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT01030000234990	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a
Carangaria	ANCESTRAL SPECIES	11	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000007681.b.a.a ##15	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT01030000234990	ENSGT00960000186692	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a
Carangaria_A	ANCESTRAL SPECIES	19	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000007681.b.a.a ##15	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00960000186692	ENSGT00940000153901.a.b.a	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a	ENSGT00390000017480
Seriola	ANCESTRAL SPECIES	30	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000007681.b.a.a ##15	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT00960000186692	ENSGT00940000163460.a.a.a.a	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000154856.A.a.c.b	ENSGT00940000161832.a	ENSGT00390000017480
Yellowtail amberjack	MODERN SPECIES	2714			sema6dl (ENSSLDG00000021909)	ENSSLDG00000021886	slc24a5 (ENSSLDG00000021873)	myef2 (ENSSLDG00000021862)	ENSSLDG00000021852	CTXN2 (ENSSLDG00000021847)	SLC12A1 (ENSSLDG00000021800)	dennd4a (ENSSLDG00000021745)	socs4 (ENSSLDG00000021736)	wdhd1 (ENSSLDG00000021689)	gch1 (ENSSLDG00000021679)	SAMD4A (ENSSLDG00000021630)	ero1a (ENSSLDG00000021600)	pacsin3 (ENSSLDG00000021581) ##22	glg1b (ENSSLDG00000021532)	TNNI2 (ENSSLDG00000021512)	aph1b (ENSSLDG00000021492)	OTOG (ENSSLDG00000021395)	myod1 (ENSSLDG00000021376)	TNNT3 (ENSSLDG00000021245)
Greater amberjack	MODERN SPECIES	3	zdhhc13 (ENSSDUG00000016374)	mpped2a (ENSSDUG00000016439) ##15	ENSSDUG00000016457	ENSSDUG00000016485	NR2E3 (ENSSDUG00000016573)	slc22a18 (ENSSDUG00000016604)	HACD3 (ENSSDUG00000016623)	SLC24A1 (ENSSDUG00000016668)	dennd4a (ENSSDUG00000016708)	socs4 (ENSSDUG00000016907)	wdhd1 (ENSSDUG00000016996)	gch1 (ENSSDUG00000017494)	SAMD4A (ENSSDUG00000017510)	ENSSDUG00000017549	ero1a (ENSSDUG00000017566)	pacsin3 (ENSSDUG00000017630) ##22	glg1b (ENSSDUG00000017681)	ENSSDUG00000017775	aph1b (ENSSDUG00000017793)	OTOG (ENSSDUG00000017868)	myod1 (ENSSDUG00000018276)	TNNT3 (ENSSDUG00000018283)	ENSSDUG00000018305	ENSSDUG00000018321	ENSSDUG00000018331	foxr1 (ENSSDUG00000018344)	atp6v0d1 (ENSSDUG00000018360)	ENSSDUG00000018375	ENSSDUG00000018386	ENSSDUG00000018406	ENSSDUG00000018427
Barramundi perch	MODERN SPECIES	96	csrp3 (ENSLCAG00010017763)	zdhhc13 (ENSLCAG00010017744)	mpped2a (ENSLCAG00010017716) ##15	ENSLCAG00010017710	ENSLCAG00010017694	NR2E3 (ENSLCAG00010017688)	slc22a18 (ENSLCAG00010017678)	HACD3 (ENSLCAG00010017676)	SLC24A1 (ENSLCAG00010017673)	dennd4a (ENSLCAG00010017670)	socs4 (ENSLCAG00010017668)	wdhd1 (ENSLCAG00010017654)	gch1 (ENSLCAG00010017650)	SAMD4A (ENSLCAG00010017642)	ero1a (ENSLCAG00010017638)	pacsin3 (ENSLCAG00010017636) ##22	glg1b (ENSLCAG00010017596)	tnni2b.1 (ENSLCAG00010017526)	aph1b (ENSLCAG00010017523)	OTOG (ENSLCAG00010017486)	myod1 (ENSLCAG00010017465)	TNNT3 (ENSLCAG00010017455)	ENSLCAG00010017452	ENSLCAG00010017447
Pleuronectoidei	ANCESTRAL SPECIES	39	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000007681.b.a.a ##15	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00390000002049.c.b	ENSGT00940000157490	ENSGT00950000182959.b.b.e.b	ENSGT00940000158477.a.a	ENSGT00940000153901.a.b.a	ENSGT01030000234990	ENSGT00940000162993	ENSGT00390000002200.a.a	ENSGT00940000163716.c.b	ENSGT00940000161832.a	ENSGT00390000017480	ENSGT00390000014065	ENSGT00390000009453.fb.b
Tongue sole	MODERN SPECIES	25	nkd1 (ENSCSEG00000011420)	brd7 (ENSCSEG00000011406)	adcy7 (ENSCSEG00000011379)	tent4b (ENSCSEG00000011367)	nip7 (ENSCSEG00000011356)	ENSCSEG00000011338	ENSCSEG00000011313	ENSCSEG00000011305	BRSK2 (ENSCSEG00000011247)	ENSCSEG00000011220	CORO2B (ENSCSEG00000011186)	anp32a (ENSCSEG00000011176)	glceb (ENSCSEG00000011164)	paqr5a (ENSCSEG00000011095)	ero1a (ENSCSEG00000011060)	pacsin3 (ENSCSEG00000011036) ##22	glg1b (ENSCSEG00000010964)	tnni2b.1 (ENSCSEG00000010949)	aph1b (ENSCSEG00000010946)	OTOG (ENSCSEG00000010918)	myod1 (ENSCSEG00000010907)
Turbot	MODERN SPECIES	17	e2f8 (ENSSMAG00000008106)	csrp3 (ENSSMAG00000008056)	zdhhc13 (ENSSMAG00000008013)	mpped2a (ENSSMAG00000033645) ##15	ENSSMAG00000007996	ENSSMAG00000007972	ENSSMAG00000007954	ENSSMAG00000007929	HACD3 (ENSSMAG00000007882)	SLC24A1 (ENSSMAG00000007857)	DENND4A (ENSSMAG00000007433)	wdhd1 (ENSSMAG00000007346)	ENSSMAG00000034634	SAMD4A (ENSSMAG00000007254)	ero1a (ENSSMAG00000007207)	ENSSMAG00000007168 ##22	ENSSMAG00000006788	ENSSMAG00000006609	ENSSMAG00000006568	ENSSMAG00000027873	ENSSMAG00000006529	ENSSMAG00000006392	ENSSMAG00000006376	ENSSMAG00000006344	ENSSMAG00000006320	ENSSMAG00000027949	ENSSMAG00000006274	ENSSMAG00000006222	c1qtnf4 (ENSSMAG00000030864)	ENSSMAG00000006194	ptpmt1 (ENSSMAG00000006187)
Anabantaria	ANCESTRAL SPECIES	11	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000007681.b.a.a ##15	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00940000163723.A.f.b	ENSGT00940000163723.A.e	ENSGT00940000155568.l	ENSGT00390000017790	ENSGT00390000006347.a	ENSGT00940000155405	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a.h	ENSGT00940000154914	ENSGT00940000160977.e.a
Zig-zag eel	MODERN SPECIES	17	csrp3 (ENSMAMG00000016232)	zdhhc13 (ENSMAMG00000016250)	mpped2a (ENSMAMG00000016266) ##15	ENSMAMG00000026458	ENSMAMG00000016336	ENSMAMG00000016434	ENSMAMG00000016453	HACD3 (ENSMAMG00000016477)	SLC24A1 (ENSMAMG00000016511)	DENND4A (ENSMAMG00000016577)	socs4 (ENSMAMG00000016740)	wdhd1 (ENSMAMG00000016742)	gch1 (ENSMAMG00000016761)	SAMD4A (ENSMAMG00000016799)	ero1a (ENSMAMG00000016859)	ENSMAMG00000016868 ##22	ENSMAMG00000016896	TNNI2 (ENSMAMG00000027039)	ENSMAMG00000016992	ENSMAMG00000017001	ENSMAMG00000017043	ENSMAMG00000017073	ENSMAMG00000017121	crybgx (ENSMAMG00000017150)	lctla (ENSMAMG00000017174)	tipin (ENSMAMG00000017203)	dis3l (ENSMAMG00000017229)	ENSMAMG00000017293	RAB11A (ENSMAMG00000027414)	ENSMAMG00000017337	ENSMAMG00000025603
Anabantoidei	ANCESTRAL SPECIES	8	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00390000007681.b.a.a ##15	ENSGT00940000160967.f	ENSGT00940000153246.a.a.a.d	ENSGT00940000156926.d	ENSGT00940000160333	ENSGT00530000062962.b.a.e	ENSGT01030000234532.B.e.b.e	ENSGT00940000155836.B	ENSGT00940000166202	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000007753.b	ENSGT00950000182973.b.a ##22	ENSGT00390000011262.e.b	ENSGT01030000234588.b.b.b.b.a.b.b	ENSGT00940000163723.A.f.b	ENSGT00940000163723.A.e	ENSGT00940000155568.l	ENSGT00390000017790	ENSGT00390000006347.a	ENSGT00940000155405	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00390000005764	ENSGT00530000063106.B	ENSGT00940000155333.A.a.h	ENSGT00940000154914	ENSGT00940000160977.e.a
Climbing perch	MODERN SPECIES	16	csrp3 (ENSATEG00000021724)	zdhhc13 (ENSATEG00000021742)	mpped2a (ENSATEG00000021765) ##15	ENSATEG00000021774	ENSATEG00000021798	ENSATEG00000021837	ENSATEG00000021851	HACD3 (ENSATEG00000021866)	SLC24A1 (ENSATEG00000021887)	DENND4A (ENSATEG00000021908)	socs4 (ENSATEG00000021970)	wdhd1 (ENSATEG00000021986)	gch1 (ENSATEG00000022027)	SAMD4A (ENSATEG00000022040)	ero1a (ENSATEG00000022081)	ENSATEG00000022101 ##22	ENSATEG00000022132	ENSATEG00000022204	ENSATEG00000022233	ENSATEG00000022248	ENSATEG00000022262	ENSATEG00000022291	ENSATEG00000022355	crybgx (ENSATEG00000022426)	lctla (ENSATEG00000022437)	tipin (ENSATEG00000022453)	dis3l (ENSATEG00000022464)	ENSATEG00000022505	RAB11A (ENSATEG00000023730)	ENSATEG00000022546	ENSATEG00000022559
Siamese fighting fish	MODERN SPECIES	14	htatip2 (ENSBSLG00000007747)	dbx1a (ENSBSLG00000007714)	NAV2 (ENSBSLG00000005804)	e2f8 (ENSBSLG00000005446)	csrp3 (ENSBSLG00000005399)	zdhhc13 (ENSBSLG00000005203)	mpped2a (ENSBSLG00000004960) ##15	ENSBSLG00000004906	ENSBSLG00000004802	ENSBSLG00000004363	dennd4a (ENSBSLG00000004135)	socs4 (ENSBSLG00000004085)	gch1 (ENSBSLG00000004073)	SAMD4A (ENSBSLG00000004019)	wdhd1 (ENSBSLG00000003779)	pacsin3 (ENSBSLG00000003052) ##22	glg1b (ENSBSLG00000002553)	tnni2b.1 (ENSBSLG00000020423)	ENSBSLG00000020374	ENSBSLG00000020364	arfgap2 (ENSBSLG00000020339)	pex16 (ENSBSLG00000020299)	cars1 (ENSBSLG00000019894)	paqr5a (ENSBSLG00000019801)	glceb (ENSBSLG00000019776)	anp32a (ENSBSLG00000019742)	CORO2B (ENSBSLG00000019705)	itga11a (ENSBSLG00000019157)	ENSBSLG00000019124	ADAMTS7 (ENSBSLG00000019017)	calml4a (ENSBSLG00000018987)
Tiger tail seahorse	MODERN SPECIES	136	mfap1 (ENSHCOG00000007017)	hddc3 (ENSHCOG00000007034)	ENSHCOG00000007050	prc1b (ENSHCOG00000007079)	ptpmt1 (ENSHCOG00000000812)	ndufs3 (ENSHCOG00000007117)	slc22a18 (ENSHCOG00000007148)	HACD3 (ENSHCOG00000000227)	SLC24A1 (ENSHCOG00000007190)	ENSHCOG00000007227	socs4 (ENSHCOG00000007249)	wdhd1 (ENSHCOG00000007286)	ENSHCOG00000007299	gch1 (ENSHCOG00000007311)	SAMD4A (ENSHCOG00000007338)	pacsin3 (ENSHCOG00000007361) ##22	GLG1 (ENSHCOG00000007399)	tnni2b.1 (ENSHCOG00000007414)	aph1b (ENSHCOG00000007434)	OTOG (ENSHCOG00000007493)	myod1 (ENSHCOG00000007505)	TNNT3 (ENSHCOG00000007514)	ENSHCOG00000007520	foxr1 (ENSHCOG00000007530)	atp6v0d1 (ENSHCOG00000000254)	ENSHCOG00000007547	ENSHCOG00000000257	ENSHCOG00000007798	ENSHCOG00000007856	ENSHCOG00000007893	c1qtnf4 (ENSHCOG00000007905)
Pinecone sodierfish	MODERN SPECIES	17	csrp3 (ENSMMDG00005023826)	zdhhc13 (ENSMMDG00005023737)	mpped2a (ENSMMDG00005023721) ##15	ENSMMDG00005023717	ENSMMDG00005023712	NR2E3 (ENSMMDG00005023708)	slc22a18 (ENSMMDG00005023705)	HACD3 (ENSMMDG00005023685)	SLC24A1 (ENSMMDG00005023674)	dennd4a (ENSMMDG00005023619)	socs4 (ENSMMDG00005023589)	wdhd1 (ENSMMDG00005023579)	gch1 (ENSMMDG00005023576)	SAMD4A (ENSMMDG00005023575)	ero1a (ENSMMDG00005023412)	pacsin3 (ENSMMDG00005023408) ##22	ENSMMDG00005023407	c1qtnf4 (ENSMMDG00005023405)	ndufs3 (ENSMMDG00005023404)	ENSMMDG00005023401	ENSMMDG00005023400	ndufs3 (ENSMMDG00005023382)	ptpmt1 (ENSMMDG00005023376)	prc1b (ENSMMDG00005023358)	vps33b (ENSMMDG00005023318)	mfap1 (ENSMMDG00005023304)	hypk (ENSMMDG00005023301)	SERINC4 (ENSMMDG00005023299)	ENSMMDG00005023296	ENSMMDG00005023293	iqgap1 (ENSMMDG00005017370)
Cod	MODERN SPECIES	5	zdhhc13 (ENSGMOG00000019229)	mpped2a (ENSGMOG00000027425) ##15	ENSGMOG00000032770	ENSGMOG00000019198	ENSGMOG00000019194	ENSGMOG00000019185	HACD3 (ENSGMOG00000019175)	SLC24A1 (ENSGMOG00000026384)	DENND4A (ENSGMOG00000026888)	ENSGMOG00000027242	socs4 (ENSGMOG00000017366)	wdhd1 (ENSGMOG00000017373)	gch1 (ENSGMOG00000013855)	SAMD4A (ENSGMOG00000010970)	ero1a (ENSGMOG00000008393)	ENSGMOG00000008409 ##22	ENSGMOG00000026469	c1qtnf4 (ENSGMOG00000029444)	ENSGMOG00000003400	ptpmt1 (ENSGMOG00000029620)	prc1b (ENSGMOG00000003427)	vps33b (ENSGMOG00000003457)	hddc3 (ENSGMOG00000003503)	mfap1 (ENSGMOG00000003510)	hypk (ENSGMOG00000003526)	SERINC4 (ENSGMOG00000003539)	ENSGMOG00000029607	ENSGMOG00000003597	iqgap1 (ENSGMOG00000003631)	cartl (ENSGMOG00000035701)	CART (ENSGMOG00000003719)
Otomorpha	ANCESTRAL SPECIES	182	ENSGT00940000160309.e.b	ENSGT00940000158707.a.a	ENSGT00390000001802.hb	ENSGT00940000159464	ENSGT00940000160974.b.d	ENSGT00940000164955.a	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000154617.B.c	ENSGT00390000005300	ENSGT00390000008748.b.g.b	ENSGT00940000159572.a.a	ENSGT00390000014038	ENSGT00940000154905.i.a	ENSGT00940000156476.g	ENSGT00950000182973.b.a ##22	ENSGT00390000002105	ENSGT00940000157182.g.b	ENSGT01090000260003.a.a	ENSGT00940000161128	ENSGT00940000158825.c	ENSGT00940000160601	ENSGT00940000166897	ENSGT00940000157816.a.b	ENSGT00940000159763	ENSGT00390000010152	ENSGT00390000000417.a.b	ENSGT00940000156939.e	ENSGT00940000154285.b.a.b	ENSGT00940000166567
Otophysi	ANCESTRAL SPECIES	4	ENSGT00940000160309.e.b	ENSGT00940000158707.a.a	ENSGT00390000001802.hb	ENSGT00940000159464	ENSGT00940000160974.b.d	ENSGT00940000164955.a	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819.g	ENSGT00940000154617.B.c	ENSGT00390000005300	ENSGT00390000008748.b.g.b	ENSGT00940000159572.a.a	ENSGT00390000014038	ENSGT00940000154905.i.a	ENSGT00940000156476.g.i	ENSGT00950000182973.b.a ##22	ENSGT00390000002105	ENSGT00940000157182.g.b	ENSGT01090000260003.a.a	ENSGT00940000161128	ENSGT00940000158825.c	ENSGT00940000160601	ENSGT00940000166897	ENSGT00940000157816.a.b	ENSGT00940000159763	ENSGT00390000010152	ENSGT00390000000417.a.b	ENSGT00940000156939.e	ENSGT00940000154285.b.a.b	ENSGT00940000166567	ENSGT00390000006485.d
Characiphysae	ANCESTRAL SPECIES	8	ENSGT00940000160309.e.b	ENSGT00940000158707.a.a	ENSGT00390000001802.hb	ENSGT00940000159464	ENSGT00940000160974.b.d	ENSGT00940000164955.a	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819.g	ENSGT00940000154617.B.c	ENSGT00390000005300	ENSGT00390000008748.b.g.b	ENSGT00940000159572.a.a	ENSGT00390000014038	ENSGT00940000154905.i.a	ENSGT00940000156476.g.i	ENSGT00950000182973.b.a ##22	ENSGT00390000002105	ENSGT00940000157182.g.b	ENSGT01090000260003.a.a	ENSGT00940000161128	ENSGT00940000158825.c	ENSGT00940000160601	ENSGT00940000166897	ENSGT00940000157816.a.b	ENSGT00940000159763	ENSGT00390000010152	ENSGT00390000000417.a.b	ENSGT00940000156939.e	ENSGT00940000154285.b.a.b	ENSGT00940000166567	ENSGT00390000006485.d
Channel catfish	MODERN SPECIES	1	znf143a (ENSIPUG00000012950)	ENSIPUG00000012995	ENSIPUG00000013006	ENSIPUG00000013013	Adamts7 (ENSIPUG00000013036)	chrna7a (ENSIPUG00000013158)	trip4 (ENSIPUG00000013205)	znf609b (ENSIPUG00000013274)	GRAMD2A (ENSIPUG00000013322)	senp8 (ENSIPUG00000013338)	myo9a (ENSIPUG00000013394)	scamp2l (ENSIPUG00000013855)	neo1a (ENSIPUG00000013896)	ENSIPUG00000014229	csnk1g1 (ENSIPUG00000014243)	pacsin3 (ENSIPUG00000014353) ##22	fadd (ENSIPUG00000014390)	ano1a (ENSIPUG00000014429)	zgc:153993 (ENSIPUG00000014498)	fgf3 (ENSIPUG00000014520)	fgf4 (ENSIPUG00000014536)	fgf19 (ENSIPUG00000014545)	oraov1 (ENSIPUG00000014549)	ccnd1 (ENSIPUG00000014564)	ENSIPUG00000014590	tpcn2 (ENSIPUG00000019633)	NADSYN1 (ENSIPUG00000019689)	dhcr7 (ENSIPUG00000019766)	Mmp15 (ENSIPUG00000019812)	ENSIPUG00000019843	ENSIPUG00000019940
Characiphysae_b	ANCESTRAL SPECIES	4	ENSGT00940000158707.a.a	ENSGT00390000001802.hb	ENSGT00940000159464	ENSGT00940000160974.b.d	ENSGT00940000164955.a	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819.g	ENSGT00940000154617.B.c	ENSGT00390000005300	ENSGT00390000008748.b.g.b	ENSGT00940000159572.a.a	ENSGT00390000014038	ENSGT00940000154905.i.a	ENSGT00940000156476.g.i	ENSGT00390000006548.b	ENSGT00950000182973.b.a ##22	ENSGT00390000002105	ENSGT00940000157182.g.b	ENSGT01090000260003.a.a	ENSGT00940000161128	ENSGT00940000158825.c	ENSGT00940000160601	ENSGT00940000166897	ENSGT00940000157816.a.b	ENSGT00940000159763	ENSGT00390000010152	ENSGT00390000000417.a.b	ENSGT00940000156939.e	ENSGT00940000154285.b.a.b	ENSGT00940000166567	ENSGT00390000006485.d
Characoidei	ANCESTRAL SPECIES	18	ENSGT00940000158707.a.a	ENSGT00390000001802.hb	ENSGT00940000159464	ENSGT00940000160974.b.d	ENSGT00940000164955.a	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819.g	ENSGT00940000154617.B.c	ENSGT00390000005300	ENSGT00390000008748.b.g.b	ENSGT00940000159572.a.a	ENSGT00390000014038	ENSGT00940000154905.i.a	ENSGT00940000156476.g.i	ENSGT00390000006548.b	ENSGT00950000182973.b.a ##22	ENSGT00390000002105	ENSGT00940000157182.g.b	ENSGT01090000260003.a.a	ENSGT00940000161128	ENSGT00940000158825.c	ENSGT00940000160601	ENSGT00940000166897	ENSGT00940000157816.a.b	ENSGT00940000159763	ENSGT00390000010152	ENSGT00390000000417.a.b	ENSGT00940000156939.e
Mexicana tetra	MODERN SPECIES	20	drd4b (ENSAMXG00000029361)	ENSAMXG00000033683	ENSAMXG00000025762	ADAMTS7 (ENSAMXG00000007208)	chrna7a (ENSAMXG00000038944)	trip4 (ENSAMXG00000007270)	znf609b (ENSAMXG00000007278)	GRAMD2A (ENSAMXG00000007284)	senp8 (ENSAMXG00000025763)	myo9aa (ENSAMXG00000007289)	scamp2l (ENSAMXG00000034251)	neo1a (ENSAMXG00000007328)	ENSAMXG00000037315	ENSAMXG00000007371	csnk1g1 (ENSAMXG00000007375)	pacsin3 (ENSAMXG00000037379) ##22	ENSAMXG00000007383	FADD (ENSAMXG00000007390)	ano1a (ENSAMXG00000031586)	zgc:153993 (ENSAMXG00000007399)	fgf3 (ENSAMXG00000029164)	fgf4 (ENSAMXG00000036274)	fgf19 (ENSAMXG00000009704)	lto1 (ENSAMXG00000034636)	ccnd1 (ENSAMXG00000043726)	vat1l (ENSAMXG00000041688)	CLEC3A (ENSAMXG00000038136)	usp47 (ENSAMXG00000010037)	dkk3a (ENSAMXG00000035905)	MICAL2 (ENSAMXG00000010053)	parvab (ENSAMXG00000032418) ##9
Red-bellied piranha	MODERN SPECIES	965																pacsin3 (ENSPNAG00000007757) ##22	FADD (ENSPNAG00000007769)	ano1a (ENSPNAG00000007773)	ANO1 (ENSPNAG00000007793)
Electric eel	MODERN SPECIES	9	drd4b (ENSEEEG00000000029)	ENSEEEG00000000026	ENSEEEG00000018392	ENSEEEG00000018391	chrna7a (ENSEEEG00000018388)	trip4 (ENSEEEG00000018387)	znf609b (ENSEEEG00000018386)	GRAMD2A (ENSEEEG00000018385)	senp8 (ENSEEEG00000018384)	myo9aa (ENSEEEG00000018383)	scamp2l (ENSEEEG00000018382)	neo1a (ENSEEEG00000018379)	ENSEEEG00000018375	ENSEEEG00000018367	csnk1g1 (ENSEEEG00000018313)	pacsin3 (ENSEEEG00000018299) ##22	FADD (ENSEEEG00000018298)	ano1a (ENSEEEG00000018297)	zgc:153993 (ENSEEEG00000018296)	fgf3 (ENSEEEG00000018294)	fgf4 (ENSEEEG00000018293)	fgf19 (ENSEEEG00000018290)	lto1 (ENSEEEG00000018288)	ccnd1 (ENSEEEG00000018287)	tpcn2 (ENSEEEG00000018286)	nadsyn1 (ENSEEEG00000018007)	dhcr7 (ENSEEEG00000017999)	MMP15 (ENSEEEG00000017998)	ENSEEEG00000017995	sinhcafl (ENSEEEG00000017992)	DENND5A (ENSEEEG00000017492)
Cyprinoidei	ANCESTRAL SPECIES	41									ENSGT00390000005300	ENSGT00390000008748.b.g.b	ENSGT00940000159572.a.a	ENSGT00940000154617.B.c	ENSGT00940000156684.t	ENSGT00390000006548.a.a	ENSGT00940000155628	ENSGT00950000182973.b.a ##22	ENSGT00390000002105	ENSGT00940000157182.g.b	ENSGT01090000260003.a.a	ENSGT00940000161128	ENSGT00940000158825.c	ENSGT00940000160601	ENSGT00940000166897	ENSGT00940000157816.a.b	ENSGT00940000159763	ENSGT00390000010152	ENSGT00390000000417.a.b	ENSGT00940000156939.e	ENSGT00940000154285.b.a.b.c	ENSGT00940000166567	ENSGT00390000006485.d
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	254	ENSGT00940000164955.a.a	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819.g.a	ENSGT00390000014290	ENSGT00940000156476.g.i.a	ENSGT00940000154905.i.a.a	ENSGT00390000014038.u	ENSGT01100000263529.a.a.a.a.a.a.a.b.b.b.a.a.a.a.a.a	ENSGT00390000005300.d.a	ENSGT00390000008748.b.g.b.a	ENSGT00940000159572.a.a.b	ENSGT00940000154617.B.c.a	ENSGT00940000156684.t.b	ENSGT00390000006548.a.a	ENSGT00940000155628.q	ENSGT00950000182973.b.a.e ##22	ENSGT00390000002105.a	ENSGT00940000157182.g.b.s	ENSGT01090000260003.a.a.e	ENSGT00940000161128.j	ENSGT00940000158825.c.g	ENSGT00940000160601.m	ENSGT00940000157816.a.b.j	ENSGT00940000159763.c	ENSGT00390000010152.g.b	ENSGT00390000000417.a.b.i	ENSGT00940000156939.e.b	ENSGT00940000166567.k.b	ENSGT00940000154285.b.a.b.c	ENSGT00940000166567.l	ENSGT00390000006485.d.i
Goldfish	MODERN SPECIES	25	ENSCARG00000033220	ENSCARG00000033203	ADAMTS7 (ENSCARG00000030350)	enosf1 (ENSCARG00000030081)	scamp2l (ENSCARG00000030019)	myo9aa (ENSCARG00000029708)	senp8 (ENSCARG00000029652)	ENSCARG00000029624	trip4 (ENSCARG00000029273)	znf609b (ENSCARG00000029233)	ENSCARG00000029212	chrna7a (ENSCARG00000029091)	neo1a (ENSCARG00000017084)	rps17 (ENSCARG00000016679)	csnk1g1 (ENSCARG00000016635)	pacsin3 (ENSCARG00000016585) ##22	ENSCARG00000016562	ano1a (ENSCARG00000016419)	zgc:153993 (ENSCARG00000016399)	fgf4 (ENSCARG00000016389)	fgf3 (ENSCARG00000016384)	ENSCARG00000016373	ccnd1 (ENSCARG00000016361)	tpcn2 (ENSCARG00000016284)	nadsyn1 (ENSCARG00000016229)	dhcr7 (ENSCARG00000016168)	MMP15 (ENSCARG00000016014)	ENSCARG00000015984	sinhcafl (ENSCARG00000015973)	DENND5A (ENSCARG00000014366)	tmem41b (ENSCARG00000014300)
Cyprininae_a	ANCESTRAL SPECIES	110	ENSGT00940000164955.a.a	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819.g.a	ENSGT00390000014290	ENSGT00940000156476.g.i.a	ENSGT00940000154905.i.a.a	ENSGT00390000014038.u	ENSGT01100000263529.a.a.a.a.a.a.a.b.b.b.a.a.a.a.a.a	ENSGT00390000005300.d.a	ENSGT00390000008748.b.g.b.a	ENSGT00940000159572.a.a.b	ENSGT00940000154617.B.c.a	ENSGT00940000156684.t.b	ENSGT00390000006548.a.a	ENSGT00940000155628.q	ENSGT00950000182973.b.a.e ##22	ENSGT00390000002105.a	ENSGT00940000157182.g.b.s	ENSGT01090000260003.a.a.e	ENSGT00940000161128.j	ENSGT00940000158825.c.g	ENSGT00940000160601.m	ENSGT00940000166897.b	ENSGT00940000157816.a.b.j	ENSGT00940000159763.c	ENSGT00390000010152.g.b	ENSGT00390000000417.a.b.i	ENSGT00940000156939.e.b	ENSGT00940000154285.b.a.b.c.a	ENSGT00940000166567.l	ENSGT00390000006485.d.i
Common carp reference	MODERN SPECIES	6	ENSCCRG00000050153	ENSCCRG00000032688	ENSCCRG00000046762	enosf1 (ENSCCRG00000005070)	myo9aa (ENSCCRG00000053854)	senp8 (ENSCCRG00000055567)	ENSCCRG00000029853	trip4 (ENSCCRG00000033485)	znf609b (ENSCCRG00000006411)	ENSCCRG00000056860	chrna7a (ENSCCRG00000016316)	neo1a (ENSCCRG00000028503)	rps17 (ENSCCRG00000074570)	ENSCCRG00000012636	csnk1g1 (ENSCCRG00000033888)	pacsin3 (ENSCCRG00000021727) ##22	FADD (ENSCCRG00000072094)	ano1a (ENSCCRG00000020360)	zgc:153993 (ENSCCRG00000046765)	fgf3 (ENSCCRG00000004557)	fgf4 (ENSCCRG00000067051)	fgf19 (ENSCCRG00000004531)	lto1 (ENSCCRG00000065219)	ccnd1 (ENSCCRG00000007012)	tpcn2 (ENSCCRG00000045490)	nadsyn1 (ENSCCRG00000002307)	dhcr7 (ENSCCRG00000057526)	ENSCCRG00000043061	ENSCCRG00000057903	sinhcafl (ENSCCRG00000062499)	DENND5A (ENSCCRG00000043145)
Golden-line barbel	MODERN SPECIES	183			ADAMTS7 (ENSSGRG00000013145)	enosf1 (ENSSGRG00000013123)	scamp2l (ENSSGRG00000013122)	myo9aa (ENSSGRG00000012831)	senp8 (ENSSGRG00000012821)	ENSSGRG00000012820	trip4 (ENSSGRG00000012752)	znf609b (ENSSGRG00000012748)	ENSSGRG00000012747	chrna7a (ENSSGRG00000012746)	neo1a (ENSSGRG00000010040)	rps17 (ENSSGRG00000010006)	csnk1g1 (ENSSGRG00000009631)	pacsin3 (ENSSGRG00000009241) ##22	ano1a (ENSSGRG00000008684)	zgc:153993 (ENSSGRG00000008677)	fgf3 (ENSSGRG00000008676)	fgf4 (ENSSGRG00000008674)	fgf4 (ENSSGRG00000008673)	fgf19 (ENSSGRG00000008671)	lto1 (ENSSGRG00000008670)	ccnd1 (ENSSGRG00000008656)	tpcn2 (ENSSGRG00000008655)	nadsyn1 (ENSSGRG00000008625)	dhcr7 (ENSSGRG00000008624)
Cyprininae	ANCESTRAL SPECIES	305										ENSGT00390000005300.d.b	ENSGT00390000008748.b.g.b.b	ENSGT00940000159572.a.a.a	ENSGT00940000154617.B.c.b	ENSGT00940000156684.t.a	ENSGT00940000155628.r	ENSGT00950000182973.b.a.f ##22	ENSGT00390000002105.b	ENSGT00940000157182.g.b.t	ENSGT01090000260003.a.a.f	ENSGT00940000161128.i	ENSGT00940000158825.c.h	ENSGT00940000160601.n	ENSGT00940000166897	ENSGT00940000157816.a.b.i	ENSGT00940000159763.d	ENSGT00390000010152.h	ENSGT00390000000417.a.b.j	ENSGT00940000156939.e.a	ENSGT00940000166567.k.a	ENSGT00390000006485.d.j	ENSGT00940000153678.a.b.c
Goldfish	MODERN SPECIES	47	H2BC13 (ENSCARG00000069954)	ENSCARG00000069950	ENSCARG00000069946	ENSCARG00000069944	ENSCARG00000069915	znf609b (ENSCARG00000069906)	ENSCARG00000069898	ENSCARG00000069895	ENSCARG00000069893	ENSCARG00000069892	chrna7a (ENSCARG00000069888)	neo1a (ENSCARG00000069337)	rps17 (ENSCARG00000069033)	ENSCARG00000069020	csnk1g1 (ENSCARG00000068939)	pacsin3 (ENSCARG00000068872) ##22	FADD (ENSCARG00000068856)	ano1a (ENSCARG00000068786)	zgc:153993 (ENSCARG00000068761)	fgf3 (ENSCARG00000068754)	fgf4 (ENSCARG00000068748)	fgf19 (ENSCARG00000068743)	lto1 (ENSCARG00000068739)	ccnd1 (ENSCARG00000068731)	tpcn2 (ENSCARG00000068478)	nadsyn1 (ENSCARG00000068389)	dhcr7 (ENSCARG00000068365)	MMP15 (ENSCARG00000068317)	ENSCARG00000068238	sinhcafl (ENSCARG00000068201)	DENND5A (ENSCARG00000065853)
Cyprininae_a	ANCESTRAL SPECIES	94	ENSGT00940000159464.b	ENSGT00940000160974.b.d.o	ENSGT00940000164955.a.b	ENSGT00940000159819.g.b	ENSGT00390000008061.j.b.c.a.b	ENSGT00940000156476.g.i.b	ENSGT00940000154905.i.a.b	ENSGT00390000014038.v	ENSGT00940000159408.o.b.b	ENSGT00390000005300.d.b	ENSGT00390000008748.b.g.b.b	ENSGT00940000159572.a.a.a	ENSGT00940000154617.B.c.b	ENSGT00940000156684.t.a	ENSGT00940000155628.r	ENSGT00950000182973.b.a.f ##22	ENSGT00390000002105.b	ENSGT00940000157182.g.b.t	ENSGT01090000260003.a.a.f	ENSGT00940000161128.i	ENSGT00940000158825.c.h	ENSGT00940000160601.n	ENSGT00940000166897.a	ENSGT00940000157816.a.b.i	ENSGT00940000159763.d	ENSGT00390000010152.h	ENSGT00390000000417.a.b.j	ENSGT00940000156939.e.a	ENSGT00940000154285.b.a.b.c.b	ENSGT00940000166567.k.a	ENSGT00390000006485.d.j
Common carp reference	MODERN SPECIES		ENSCCRG00000080745	ENSCCRG00000064615	scamp2l (ENSCCRG00000028293)	ENSCCRG00000069185	myo9aa (ENSCCRG00000028327)	senp8 (ENSCCRG00000082072)	ENSCCRG00000072679	ENSCCRG00000022537	ENSCCRG00000029786	trip4 (ENSCCRG00000050826)	ENSCCRG00000070394	chrna7a (ENSCCRG00000060541)	ENSCCRG00000034969	neo1a (ENSCCRG00000010056)	csnk1g1 (ENSCCRG00000080486)	pacsin3 (ENSCCRG00000009284) ##22	ano1a (ENSCCRG00000053149)	zgc:153993 (ENSCCRG00000080344)	fgf3 (ENSCCRG00000078069)	fgf4 (ENSCCRG00000030330)	fgf19 (ENSCCRG00000061363)	lto1 (ENSCCRG00000056961)	CCND1 (ENSCCRG00000053902)	tpcn2 (ENSCCRG00000026408)	nadsyn1 (ENSCCRG00000061042)	dhcr7 (ENSCCRG00000068782)	ENSCCRG00000081502	ENSCCRG00000036225	ENSCCRG00000043085	sinhcafl (ENSCCRG00000070183)	DENND5A (ENSCCRG00000043286)
Golden-line barbel	MODERN SPECIES	683								ENSSGRG00000041009	trip4 (ENSSGRG00000041008)	znf609b (ENSSGRG00000041007)	ENSSGRG00000041005	chrna7a (ENSSGRG00000040995)	neo1a (ENSSGRG00000039051)	rps17 (ENSSGRG00000038948)	csnk1g1 (ENSSGRG00000037805)	pacsin3 (ENSSGRG00000037709) ##22	ENSSGRG00000037708	ano1a (ENSSGRG00000037680)
Zebrafish	MODERN SPECIES	22	tp53bp1 (ENSDARG00000079000)	tubgcp4 (ENSDARG00000005374)	cdkn2aip (ENSDARG00000035853)	cart3 (ENSDARG00000035852)	cdh1 (ENSDARG00000102750)	ENSDARG00000100131	ENSDARG00000104332	ENSDARG00000104440	trip4 (ENSDARG00000098074)	znf609b (ENSDARG00000104530)	ENSDARG00000103736	chrna7a (ENSDARG00000101702)	neo1a (ENSDARG00000102855)	rps17 (ENSDARG00000104011)	csnk1g1 (ENSDARG00000104342)	pacsin3 (ENSDARG00000099339) ##22	FADD (ENSDARG00000103021)	ano1a (ENSDARG00000102335)	zgc:153993 (ENSDARG00000099722)	fgf3 (ENSDARG00000101540)	fgf4 (ENSDARG00000105230)	fgf19 (ENSDARG00000098663)	lto1 (ENSDARG00000104287)	ccnd1 (ENSDARG00000101637)	tpcn2 (ENSDARG00000100420)	snai3 (ENSDARG00000031243)	ENSDARG00000035796	RNF166 (ENSDARG00000089538)	ctu2 (ENSDARG00000051851)	PIEZO1 (ENSDARG00000076870)	CDT1 (ENSDARG00000051854)
Clupeiformes	ANCESTRAL SPECIES	369																ENSGT00950000182973.b.a ##22	ENSGT00390000002105	ENSGT00940000157182.g.b	ENSGT01090000260003.a.a	ENSGT00940000161128	ENSGT00940000158825.c	ENSGT00940000160601	ENSGT00940000166897	ENSGT00940000157816.a.b	ENSGT00940000159763	ENSGT00390000010152	ENSGT00390000000417.a.b	ENSGT00940000156939.e
Denticle herring	MODERN SPECIES	7	ENSDCDG00000026869	ABCC8 (ENSDCDG00000026610)	OTOG (ENSDCDG00000026583)	myod1 (ENSDCDG00000026580)	tnnt3b (ENSDCDG00000026571)	ENSDCDG00000026556	ENSDCDG00000026554	ENSDCDG00000026552	tnni2b.1 (ENSDCDG00000026551)	tnni2b.2 (ENSDCDG00000026548)	galns (ENSDCDG00000026497)	trappc2l (ENSDCDG00000026484)	PABPN1L (ENSDCDG00000026482)	CBFA2T3 (ENSDCDG00000026480)	ACSF3 (ENSDCDG00000026303)	pacsin3 (ENSDCDG00000026254) ##22	FADD (ENSDCDG00000026252)	ano1a (ENSDCDG00000022511)	zgc:153993 (ENSDCDG00000022398)	fgf3 (ENSDCDG00000022315)	fgf4 (ENSDCDG00000022308)	fgf19 (ENSDCDG00000022305)	lto1 (ENSDCDG00000022303)	ENSDCDG00000022301	ccnd1 (ENSDCDG00000022299)	ENSDCDG00000022293	tpcn2 (ENSDCDG00000031902)	nadsyn1 (ENSDCDG00000031887)	ENSDCDG00000031868	ipo7 (ENSDCDG00000030506)	tmem41b (ENSDCDG00000030491)
Atlantic herring	MODERN SPECIES	22	phf21aa (ENSCHAG00000026918)	creb3l1 (ENSCHAG00000026903)	DGKZ (ENSCHAG00000026821)	CHRM4 (ENSCHAG00000026793)	ENSCHAG00000026787	ENSCHAG00000026781	acp2 (ENSCHAG00000026780)	SNX1 (ENSCHAG00000026760)	gas8 (ENSCHAG00000026720)	scamp2l (ENSCHAG00000026713)	ENSCHAG00000026711	ENSCHAG00000026708	neo1a (ENSCHAG00000026331)	rps17 (ENSCHAG00000026291)	csnk1g1 (ENSCHAG00000026257)	pacsin3 (ENSCHAG00000026241) ##22	ENSCHAG00000026238	lto1 (ENSCHAG00000026237)	ENSCHAG00000026234	fgf19 (ENSCHAG00000026232)	zgc:153993 (ENSCHAG00000026227)	ENSCHAG00000026225	ENSCHAG00000026221	ENSCHAG00000026211	CPNE7 (ENSCHAG00000026164)	zgc:162592 (ENSCHAG00000026161)	cyb5b (ENSCHAG00000026159)	dhx38 (ENSCHAG00000025806)	ENSCHAG00000025766	ENSCHAG00000025757	zfhx3b (ENSCHAG00000025742)
Spotted gar	MODERN SPECIES	666	znf408 (ENSLOCG00000005752)	f2 (ENSLOCG00000005730)	arhgap1 (ENSLOCG00000005713)	ENSLOCG00000005694	atg13 (ENSLOCG00000005677)	harbi1 (ENSLOCG00000005661)	zgc:110699 (ENSLOCG00000005631)	phf21aa (ENSLOCG00000005618)	creb3l1 (ENSLOCG00000005600)	DGKZ (ENSLOCG00000005570)	mdkb (ENSLOCG00000005557)	CHRM4 (ENSLOCG00000005536)	ambra1a (ENSLOCG00000005523)	acp2 (ENSLOCG00000005499)	ddb2 (ENSLOCG00000005486)	pacsin3 (ENSLOCG00000005453) ##22	arfgap2 (ENSLOCG00000005421)	ENSLOCG00000005410	pex16 (ENSLOCG00000005389)	chst1 (ENSLOCG00000017322)	zgc:101566 (ENSLOCG00000005326)	ENSLOCG00000005304	ENSLOCG00000005294	acte1 (ENSLOCG00000005275)	shank2b (ENSLOCG00000005253)	CTTN (ENSLOCG00000005239)	ppfia1 (ENSLOCG00000005197)	FADD (ENSLOCG00000005182)	ano1a (ENSLOCG00000005155)	zgc:153993 (ENSLOCG00000005142)	fgf3 (ENSLOCG00000005127)
Reedfish	MODERN SPECIES	10	syt13 (ENSECRG00000004607)	PRDM11 (ENSECRG00000004618)	znf408 (ENSECRG00000004627)	f2 (ENSECRG00000004654)	arhgap1 (ENSECRG00000004708)	ENSECRG00000004727	atg13 (ENSECRG00000004754)	phf21aa (ENSECRG00000004815)	creb3l1 (ENSECRG00000004835)	DGKZ (ENSECRG00000004862)	mdkb (ENSECRG00000004892)	CHRM4 (ENSECRG00000004899)	ambra1a (ENSECRG00000004903)	acp2 (ENSECRG00000004918)	ddb2 (ENSECRG00000004932)	pacsin3 (ENSECRG00000004954) ##22	arfgap2 (ENSECRG00000004974)	ENSECRG00000005001	pex16 (ENSECRG00000005013)	large2 (ENSECRG00000005025)	ENSECRG00000005040	ENSECRG00000005054	ENSECRG00000005065	ENSECRG00000005075	ENSECRG00000005081	macroh2a2 (ENSECRG00000005092)	ENSECRG00000005101	sgpl1 (ENSECRG00000005118)	pcbd1 (ENSECRG00000005135)	tkfc (ENSECRG00000005160)	cyb561a3a (ENSECRG00000005181)
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00950000182973.b.b ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00950000182973.b.b ##22
Sarcopterygii	ANCESTRAL SPECIES	1127																ENSGT00950000182973.b.b ##22	ENSGT00940000160439
Tetrapoda	ANCESTRAL SPECIES	9										ENSGT00390000004520	ENSGT00940000160092.C	ENSGT00940000162754	ENSGT00560000077365	ENSGT00940000161465	ENSGT00940000161433	ENSGT00950000182973.b.b ##22	ENSGT00940000160439	ENSGT00940000159302	ENSGT00940000162677	ENSGT00940000161001	ENSGT00940000160588	ENSGT00530000063576.A	ENSGT00940000158627	ENSGT00930000151035.a	ENSGT00390000005535	ENSGT00940000164949	ENSGT00940000164715	ENSGT01060000248595.b.a.b.a	ENSGT00390000009663	ENSGT00940000167440	ENSGT00390000009899.a.d
Anura	ANCESTRAL SPECIES	229									ENSGT00950000186131	ENSGT01060000248595.b.a.b.b	ENSGT00950000182838.A.a.a	ENSGT00940000162754	ENSGT00560000077365	ENSGT00940000161465	ENSGT00940000161433	ENSGT00950000182973.b.b ##22	ENSGT00940000160439	ENSGT00940000159302	ENSGT00940000162677	ENSGT00940000167404	ENSGT01050000244900.a.b	ENSGT00940000153222.a.b.a
Frog	MODERN SPECIES	7	cacng7 (ENSXETG00000010044)	cacng8 (ENSXETG00000010046)	pitpnc1l (ENSXETG00000010057)	axin2 (ENSXETG00000010058)	fam83e (ENSXETG00000037610)	XB5850668 [provisional] (ENSXETG00000035763)	itprip (ENSXETG00000010085)	sult2a1 (ENSXETG00000031975)	aqp10 (ENSXETG00000009033)	ENSXETG00000038735	cpt1al (ENSXETG00000012607)	spib (ENSXETG00000044387)	pold1 (ENSXETG00000009036)	nr1h2 (ENSXETG00000000307)	acp4 (ENSXETG00000000300)	mgc147475 (ENSXETG00000000295) ##22	med25 (ENSXETG00000000296)	mob2.2 (ENSXETG00000000293)	pnkp (ENSXETG00000030776)	cdknx (ENSXETG00000000286)	ENSXETG00000000274	ENSXETG00000047369	ENSXETG00000043621	ccndx (ENSXETG00000000267)	ppfia3 (ENSXETG00000000265)	lin7b (ENSXETG00000034255)	ENSXETG00000044074	ENSXETG00000012348	XB5932119 [provisional] (ENSXETG00000031278)	gbp6 (ENSXETG00000043808)	gbp1 (ENSXETG00000015092)
Leishan spiny toad	MODERN SPECIES	2	LIN7B (ENSLLEG00000023030)	ENSLLEG00000022999	ENSLLEG00000022015	ENSLLEG00000021962	ENSLLEG00000021909	ENSLLEG00000021806	ENSLLEG00000021719	ENSLLEG00000021693	ENSLLEG00000021651	PNKP (ENSLLEG00000021473)	ENSLLEG00000021415	ENSLLEG00000021365	NR1H2 (ENSLLEG00000021278)	ENSLLEG00000021259	ENSLLEG00000020686	ENSLLEG00000020570 ##22	MED25 (ENSLLEG00000020334)	ENSLLEG00000020298	POLD1 (ENSLLEG00000017518)	ENSLLEG00000017208	AP2A1 (ENSLLEG00000016297)	ENSLLEG00000015796	ENSLLEG00000015728	ENSLLEG00000015628	ENSLLEG00000015455	PAFAH1B3 (ENSLLEG00000015175)	CIC (ENSLLEG00000014745)	ENSLLEG00000014713	ENSLLEG00000014609	GSK3A (ENSLLEG00000014401)	ENSLLEG00000014367
Amniota	ANCESTRAL SPECIES	52	ENSGT00390000011694	ENSGT00390000009228.a	ENSGT00390000004452	ENSGT00940000160261	ENSGT00940000161770	ENSGT00940000164677	ENSGT00940000153561.b.a.b	ENSGT00950000183186.A	ENSGT00390000004520	ENSGT00940000162319	ENSGT00940000160092.C	ENSGT00940000162754	ENSGT00560000077365	ENSGT00940000161465	ENSGT00940000161433	ENSGT00950000182973.b.b ##22	ENSGT00940000159302	ENSGT00940000160439	ENSGT00390000010727	ENSGT00950000182838.A.a.a	ENSGT00390000002611	ENSGT01060000248595.b.a.b.b	ENSGT00950000186131
Sauria	ANCESTRAL SPECIES	90									ENSGT00390000004520	ENSGT00940000162319	ENSGT00940000160092.C	ENSGT00940000162754	ENSGT00560000077365	ENSGT00940000161465	ENSGT00940000161433	ENSGT00950000182973.b.b ##22	ENSGT00940000160179	ENSGT00940000163131
Lepidosauria	ANCESTRAL SPECIES	75															ENSGT00940000161433	ENSGT00950000182973.b.b ##22	ENSGT00940000160179	ENSGT00940000164903	ENSGT00940000158989	ENSGT00940000175652	ENSGT00390000017397	ENSGT00940000165851	ENSGT00940000168900	ENSGT00940000154700	ENSGT00390000018612.a.a	ENSGT00950000182841.b.b.a	ENSGT00950000182841.b.b.b	ENSGT00960000188719	ENSGT01090000260003.a.b.a	ENSGT00940000163157	ENSGT00940000161485
Episquamata	ANCESTRAL SPECIES	5	ENSGT00940000157101.d.a.a.a.a	ENSGT00940000157101.d.a.b	ENSGT00940000163342	ENSGT00940000164396	ENSGT00390000003249	ENSGT00390000017900	ENSGT00390000006265.a	ENSGT00940000160506	ENSGT00390000005976.b	ENSGT00940000159895	ENSGT00950000183191.a.a	ENSGT00940000157795	ENSGT00940000156748	ENSGT00530000063743.a	ENSGT00940000161433	ENSGT00950000182973.b.b ##22	ENSGT00940000160179	ENSGT00940000164903	ENSGT00940000158989	ENSGT00390000017397	ENSGT00940000165851	ENSGT00940000168900	ENSGT00940000154700	ENSGT00390000018612.a.a	ENSGT00950000182841.b.b.a	ENSGT00950000182841.b.b.b	ENSGT00960000188719	ENSGT01090000260003.a.b.a	ENSGT00940000163157	ENSGT00940000161485	ENSGT00950000182956.b.a
Laterata	ANCESTRAL SPECIES	34	ENSGT00940000163342	ENSGT00940000164396.g	ENSGT00390000003249	ENSGT00390000017900	ENSGT00390000006265.a	ENSGT00940000160506	ENSGT00390000005976.b	ENSGT00390000007119	ENSGT00940000163371.b.a.a	ENSGT00940000159895	ENSGT00950000183191.a.a	ENSGT00940000157795	ENSGT00940000156748	ENSGT00530000063743.a	ENSGT00940000161433	ENSGT00950000182973.b.b ##22	ENSGT00940000160179	ENSGT00940000164903	ENSGT00940000158989	ENSGT00390000017397	ENSGT00940000165851	ENSGT00940000154700	ENSGT00390000018612.a.a	ENSGT00950000182841.b.b.a	ENSGT00950000182841.b.b.b	ENSGT00960000188719	ENSGT01090000260003.a.b.a	ENSGT00940000163157	ENSGT00940000161485	ENSGT00950000182956.b.a	ENSGT00390000014026
Argentine black and white tegu	MODERN SPECIES	38	ENSSMRG00000004341	CLN3 (ENSSMRG00000004317)	ENSSMRG00000004298	ENSSMRG00000004289	ENSSMRG00000004288	ENSSMRG00000004287	SPNS1 (ENSSMRG00000004280)	ENSSMRG00000004278	ENSSMRG00000004275	ATP2A1 (ENSSMRG00000004267)	SH2B1 (ENSSMRG00000004252)	ATXN2L (ENSSMRG00000004249)	TUFM (ENSSMRG00000004247)	RABEP2 (ENSSMRG00000004245)	ACP4 (ENSSMRG00000004243)	ENSSMRG00000004235 ##22	ENSSMRG00000004231	ENSSMRG00000004229	TBC1D17 (ENSSMRG00000004224)	AKT1S1 (ENSSMRG00000004223)	ENSSMRG00000004222	ENSSMRG00000004219	PRMT1 (ENSSMRG00000004215)	GYS1 (ENSSMRG00000004209)	ENSSMRG00000004205	ENSSMRG00000004204	ENSSMRG00000004199	ENSSMRG00000004198	ENSSMRG00000004189	CD37 (ENSSMRG00000004187)	ENSSMRG00000004186
Common wall lizard	MODERN SPECIES	4	ENSPMRG00000021233	CLN3 (ENSPMRG00000021242)	ENSPMRG00000021259	PRODH2 (ENSPMRG00000021275)	ENSPMRG00000021291	ENSPMRG00000021302	SPNS1 (ENSPMRG00000021321)	ENSPMRG00000021331	ENSPMRG00000021347	ENSPMRG00000021363	ENSPMRG00000021368	ENSPMRG00000021372	ENSPMRG00000021375	ENSPMRG00000021382	ATP2A1 (ENSPMRG00000021557)	ENSPMRG00000022139 ##22	SH2B1 (ENSPMRG00000022174)	ATXN2L (ENSPMRG00000022197)	TUFM (ENSPMRG00000022210)	RABEP2 (ENSPMRG00000022233)	ACP4 (ENSPMRG00000022323)	ENSPMRG00000022339	ENSPMRG00000022342	TBC1D17 (ENSPMRG00000022346)	AKT1S1 (ENSPMRG00000022352)	ENSPMRG00000022357	ENSPMRG00000022359	PRMT1 (ENSPMRG00000017893)	GYS1 (ENSPMRG00000017901)	ENSPMRG00000017910	ENSPMRG00000017911
Toxicofera	ANCESTRAL SPECIES	13	ENSGT00940000157101.d.a.b	ENSGT00940000157101.d.a.a.a.b	ENSGT00940000163342	ENSGT00940000164396	ENSGT00390000003249	ENSGT00390000017900	ENSGT00390000006265.a	ENSGT00940000160506	ENSGT00390000005976.b	ENSGT00940000159895	ENSGT00950000183191.a.a	ENSGT00940000157795	ENSGT00940000156748	ENSGT00530000063743.a	ENSGT00940000161433	ENSGT00950000182973.b.b ##22	ENSGT00940000160179	ENSGT00940000164903	ENSGT00940000158989	ENSGT00390000017397	ENSGT00940000165851	ENSGT00940000168900	ENSGT00940000154700	ENSGT00390000018612.a.a	ENSGT00950000182841.b.b.a	ENSGT00950000182841.b.b.b	ENSGT00960000188719	ENSGT01090000260003.a.b.a	ENSGT00940000163157	ENSGT00940000161485	ENSGT00950000182956.b.a
Elapidae	ANCESTRAL SPECIES	16	ENSGT00940000163342	ENSGT00940000164396	ENSGT00390000003249	ENSGT00390000017900	ENSGT00390000006265.a	ENSGT00940000160506	ENSGT00390000005976.b	ENSGT01000000216248	ENSGT00390000007119	ENSGT00940000159895	ENSGT00950000183191.a.a	ENSGT00940000157795.e.a	ENSGT00940000156748	ENSGT00530000063743.a	ENSGT00940000161433	ENSGT00950000182973.b.b ##22	ENSGT00940000160179	ENSGT00940000164903	ENSGT00940000158989	ENSGT00390000017397	ENSGT00940000165851	ENSGT00940000154700	ENSGT00390000018612.a.a	ENSGT00950000182841.b.b.a	ENSGT00950000182841.b.b.b	ENSGT00960000188719	ENSGT01090000260003.a.b.a	ENSGT00940000163157	ENSGT00940000161485	ENSGT00950000182956.b.a	ENSGT01030000236559
Indian cobra	MODERN SPECIES	337	ENSNNAG00000007382	PRODH2 (ENSNNAG00000007457)	CABP5 (ENSNNAG00000007790)	ENSNNAG00000007825	SPNS1 (ENSNNAG00000007901)	ENSNNAG00000008133	ENSNNAG00000008153	ENSNNAG00000008179	ENSNNAG00000008213	ATP2A1 (ENSNNAG00000008263)	SH2B1 (ENSNNAG00000008404)	ENSNNAG00000008586	TUFM (ENSNNAG00000010075)	RABEP2 (ENSNNAG00000010115)	ENSNNAG00000010255	ENSNNAG00000010608 ##22	ENSNNAG00000010636	ENSNNAG00000010822	TBC1D17 (ENSNNAG00000010847)	ENSNNAG00000010910	ENSNNAG00000010934	ENSNNAG00000010960	PRMT1 (ENSNNAG00000010988)	GYS1 (ENSNNAG00000011072)	ENSNNAG00000011147	ENSNNAG00000011165	ENSNNAG00000011178	BAX (ENSNNAG00000011197)	ENSNNAG00000011329	ENSNNAG00000011526	ENSNNAG00000011578
Elapidae_a	ANCESTRAL SPECIES	22	ENSGT00390000006265.a	ENSGT00940000160506	ENSGT00530000063627.b	ENSGT00390000005976.b	ENSGT01000000216248	ENSGT00390000007119	ENSGT01070000254666	ENSGT00960000191410	ENSGT00990000210513	ENSGT00940000159895	ENSGT00950000183191.a.a	ENSGT00940000157795.e.a	ENSGT00940000156748	ENSGT00530000063743.a	ENSGT00940000161433	ENSGT00950000182973.b.b ##22	ENSGT00940000160179	ENSGT00940000164903	ENSGT00940000158989	ENSGT00390000017397	ENSGT00940000165851	ENSGT00940000154700	ENSGT00390000018612.a.a	ENSGT00950000182841.b.b.a	ENSGT00950000182841.b.b.b	ENSGT00960000188719	ENSGT01090000260003.a.b.a	ENSGT00940000163157.e.b	ENSGT00940000163157.e.a	ENSGT00940000161485	ENSGT00950000182956.b.a
Acanthophiinae	ANCESTRAL SPECIES	25	ENSGT00390000017900	ENSGT00390000006265.a	ENSGT00940000160506	ENSGT00390000005976.b	ENSGT00390000007119	ENSGT01000000216248	ENSGT00960000191410	ENSGT00990000210513	ENSGT01070000254666	ENSGT00940000159895	ENSGT00950000183191.a.a	ENSGT00940000157795.e.a	ENSGT00940000156748.a	ENSGT00530000063743.a	ENSGT00940000161433	ENSGT00950000182973.b.b ##22	ENSGT00940000160179	ENSGT00940000164903	ENSGT00940000158989	ENSGT00390000017397.i	ENSGT00940000165851	ENSGT00940000154700	ENSGT00390000018612.a.a	ENSGT00950000182841.b.b.a	ENSGT00950000182841.b.b.b	ENSGT00960000188719	ENSGT01090000260003.a.b.a	ENSGT00940000163157.e.b	ENSGT00940000163157.e.a	ENSGT00940000161485	ENSGT00950000182956.b.a
Mainland tiger snake	MODERN SPECIES	91	ENSNSUG00000006649	PRODH2 (ENSNSUG00000006645)	CABP5 (ENSNSUG00000006644)	ENSNSUG00000006643	SPNS1 (ENSNSUG00000006641)	ENSNSUG00000006640	ENSNSUG00000006638	ENSNSUG00000006637	ENSNSUG00000006636	ATP2A1 (ENSNSUG00000006632)	SH2B1 (ENSNSUG00000006625)	ENSNSUG00000005943	ENSNSUG00000005941	RABEP2 (ENSNSUG00000005937)	ENSNSUG00000005933	ENSNSUG00000005913 ##22	ENSNSUG00000005897	ENSNSUG00000005896	TBC1D17 (ENSNSUG00000005881)	ENSNSUG00000005880	ENSNSUG00000005869	ENSNSUG00000005868	PRMT1 (ENSNSUG00000005867)	GYS1 (ENSNSUG00000005866)	ENSNSUG00000005865	ENSNSUG00000005864	ENSNSUG00000005863	BAX (ENSNSUG00000005862)	ENSNSUG00000005860	ENSNSUG00000005858	ENSNSUG00000005857
Eastern brown snake	MODERN SPECIES	53	CABP5 (ENSPTXG00000014445)	ENSPTXG00000014447	SPNS1 (ENSPTXG00000014450)	ENSPTXG00000014454	ENSPTXG00000014456	ENSPTXG00000014458	ENSPTXG00000014459	ENSPTXG00000014460	ENSPTXG00000014461	ATP2A1 (ENSPTXG00000014463)	SH2B1 (ENSPTXG00000014470)	ENSPTXG00000014473	TUFM (ENSPTXG00000014570)	RABEP2 (ENSPTXG00000014574)	ENSPTXG00000014576	ENSPTXG00000014655 ##22	ENSPTXG00000014656	ENSPTXG00000014683	TBC1D17 (ENSPTXG00000014692)	ENSPTXG00000015310	ENSPTXG00000015312	ENSPTXG00000015313	PRMT1 (ENSPTXG00000015314)	GYS1 (ENSPTXG00000015316)	ENSPTXG00000015320	ENSPTXG00000015321	ENSPTXG00000015324	BAX (ENSPTXG00000015327)	ENSPTXG00000015332	CD37 (ENSPTXG00000015338)	ENSPTXG00000015343
Blue-lipped sea krait	MODERN SPECIES	820																ENSLLTG00000012886 ##22
Lizard	MODERN SPECIES	901	ENSACAG00000045341	ENSACAG00000005858	ENSACAG00000027873	SPNS1 (ENSACAG00000005777)	ENSACAG00000005762	ENSACAG00000005761	ENSACAG00000028673	ATP2A1 (ENSACAG00000005552)	SH2B1 (ENSACAG00000005528)	ENSACAG00000005425	ENSACAG00000005399	ENSACAG00000026973	ENSACAG00000037141	ENSACAG00000005243	ENSACAG00000040467	ENSACAG00000005181 ##22	ENSACAG00000005091	ENSACAG00000005085	ENSACAG00000004969	ENSACAG00000015509	ENSACAG00000004864	ENSACAG00000004713	ENSACAG00000029107	ENSACAG00000038985	ENSACAG00000004652
Archelosauria	ANCESTRAL SPECIES	89												ENSGT00940000160092.C	ENSGT00940000162754	ENSGT00560000077365	ENSGT00940000161465	ENSGT00950000182973.b.b ##22	ENSGT00940000160179	ENSGT00940000163131
Cryptodira	ANCESTRAL SPECIES	180																ENSGT00950000182973.b.b ##22	ENSGT00940000160179	ENSGT00940000164903
Testudinoidea	ANCESTRAL SPECIES	35				ENSGT00940000166165	ENSGT00390000009228.a	ENSGT00390000004452	ENSGT00940000160261	ENSGT00940000161770	ENSGT00940000153561.b.a.b.i	ENSGT01100000267101	ENSGT00390000004520	ENSGT00940000160092.C	ENSGT00940000162754	ENSGT00560000077365	ENSGT00940000161465	ENSGT00950000182973.b.b ##22	ENSGT00940000160179	ENSGT00940000164903	ENSGT00940000158989	ENSGT00390000017397	ENSGT00940000165851	ENSGT00940000168900	ENSGT00940000154700	ENSGT00940000154318.B	ENSGT00940000160569	ENSGT00950000183205.b.a.b.a.a	ENSGT00940000160972	ENSGT00440000037417.B	ENSGT00940000158268.b	ENSGT00390000015505	ENSGT01010000222360.D.a
Testudinidae	ANCESTRAL SPECIES	47					ENSGT00390000009228.a	ENSGT00390000004452	ENSGT00940000160261	ENSGT00940000161770	ENSGT00940000153561.b.a.b.i	ENSGT00950000183186.A	ENSGT00390000004520	ENSGT00940000160092.C	ENSGT00940000162754	ENSGT00560000077365	ENSGT00940000161465	ENSGT00950000182973.b.b ##22	ENSGT00940000160179	ENSGT00940000164903	ENSGT00940000158989	ENSGT00390000017397	ENSGT00940000165851	ENSGT00940000154700	ENSGT00940000154318.B	ENSGT00940000160569	ENSGT00950000183205.b.a.b.a.a	ENSGT00940000160972	ENSGT00440000037417.B	ENSGT00940000158268.b	ENSGT00390000015505	ENSGT01010000222360.D.a	ENSGT01070000256721
Goode s thornscrub tortoise	DUPLICATION
Goode s thornscrub tortoise	MODERN SPECIES	138	ENSGEVG00005018137	ENSGEVG00005018127	ENSGEVG00005018110	ENSGEVG00005018094	JOSD2 (ENSGEVG00005018081)	ASPDH (ENSGEVG00005018037)	LRRC4B (ENSGEVG00005018015)	SYT3 (ENSGEVG00005017928)	SHANK1 (ENSGEVG00005017819)	ENSGEVG00005017747	ENSGEVG00005017732	EMC10 (ENSGEVG00005017669)	MYBPC2 (ENSGEVG00005015625)	SPIB (ENSGEVG00005015372)	POLD1 (ENSGEVG00005015329)	ENSGEVG00005015020 ##22	NR1H2 (ENSGEVG00005014880)	ENSGEVG00005014683 ##22	NAPSA (ENSGEVG00005014028)	ENSGEVG00005013928	TBC1D17 (ENSGEVG00005013856)	ENSGEVG00005013799	AKT1S1 (ENSGEVG00005013764)	ENSGEVG00005013715	POLR2L (ENSGEVG00005013673)	PRMT1 (ENSGEVG00005013618)	BCL2L12 (ENSGEVG00005013573)	ENSGEVG00005013516	SCAF1 (ENSGEVG00005013466)	RRAS (ENSGEVG00005013436)	PRR12 (ENSGEVG00005013397)
Goode s thornscrub tortoise	MODERN SPECIES	138	ENSGEVG00005018110	ENSGEVG00005018094	JOSD2 (ENSGEVG00005018081)	ASPDH (ENSGEVG00005018037)	LRRC4B (ENSGEVG00005018015)	SYT3 (ENSGEVG00005017928)	SHANK1 (ENSGEVG00005017819)	ENSGEVG00005017747	ENSGEVG00005017732	EMC10 (ENSGEVG00005017669)	MYBPC2 (ENSGEVG00005015625)	SPIB (ENSGEVG00005015372)	POLD1 (ENSGEVG00005015329)	ENSGEVG00005015020 ##22	NR1H2 (ENSGEVG00005014880)	ENSGEVG00005014683 ##22	NAPSA (ENSGEVG00005014028)	ENSGEVG00005013928	TBC1D17 (ENSGEVG00005013856)	ENSGEVG00005013799	AKT1S1 (ENSGEVG00005013764)	ENSGEVG00005013715	POLR2L (ENSGEVG00005013673)	PRMT1 (ENSGEVG00005013618)	BCL2L12 (ENSGEVG00005013573)	ENSGEVG00005013516	SCAF1 (ENSGEVG00005013466)	RRAS (ENSGEVG00005013436)	PRR12 (ENSGEVG00005013397)	ENSGEVG00005013356	NOSIP (ENSGEVG00005013321)
Emydidae	ANCESTRAL SPECIES	445															ENSGT00940000161465	ENSGT00950000182973.b.b ##22
painted turtle	MODERN SPECIES	1944															NR1H2 (ENSCPBG00000011507)	ENSCPBG00000011531 ##22
Coelacanth	MODERN SPECIES	305						SHANK1 (ENSLACG00000003467)	ENSLACG00000006300	SYT3 (ENSLACG00000007619)	ENSLACG00000008815	ENSLACG00000009157	ENSLACG00000010063	LRRC4B (ENSLACG00000010297)	ENSLACG00000011300	CPT1C (ENSLACG00000012903)	ENSLACG00000013258	ENSLACG00000013411 ##22	MED25 (ENSLACG00000013711)	ENSLACG00000013917	ENSLACG00000013984	PNKP (ENSLACG00000014058)	ENSLACG00000014280	TRPM4 (ENSLACG00000014690)	ENSLACG00000015023	NR1H2 (ENSLACG00000015170)	POLD1 (ENSLACG00000015315)	SPIB (ENSLACG00000022621)	MYBPC2 (ENSLACG00000015666)	EMC10 (ENSLACG00000015911)	ENSLACG00000022602	ENSLACG00000016099	ENSLACG00000016143
Actinopterygii	ANCESTRAL SPECIES	863																ENSGT00950000182973.b.b ##22	ENSGT00390000017397
Neopterygii	ANCESTRAL SPECIES	679																ENSGT00950000182973.b.b ##22	ENSGT00390000017397
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	83					ENSGT00940000158125.b	ENSGT00940000163157.b	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00950000182973.b.b.d ##22	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT00940000161121	ENSGT01050000244900.a.b	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b
Osteoglossiformes	ANCESTRAL SPECIES	310																ENSGT00950000182973.b.b.c ##22	ENSGT00940000168122	ENSGT00940000161770.b	ENSGT00940000160261.h	ENSGT00940000161433	ENSGT00940000160092.A	ENSGT00940000167404.q	ENSGT00390000001927.b.p	ENSGT00940000161121	ENSGT01050000244900.a.b.d	ENSGT00390000007725.B.c	ENSGT00940000166365.e	ENSGT00940000164717.b	ENSGT00940000166365.f	ENSGT00940000167425.a	ENSGT00940000161346
Asian bonytongue	MODERN SPECIES	12	MPRIP (ENSSFOG00015017185)	DNAH3 (ENSSFOG00015017037)	lyrm1 (ENSSFOG00015028653)	DCUN1D3 (ENSSFOG00015029071)	KATNIP (ENSSFOG00015030287)	cox6b1 (ENSSFOG00015016958)	ENSSFOG00015016936	luc7l (ENSSFOG00015016914)	ENSSFOG00015016808	slc6a16b (ENSSFOG00015016752)	ENSSFOG00015024266	slc17a7a (ENSSFOG00015016686)	ENSSFOG00015016665	gys1 (ENSSFOG00015016588)	SHANK1 (ENSSFOG00015016526)	ENSSFOG00015016453 ##22	ENSSFOG00015016418	SYT3 (ENSSFOG00015016360)	LRRC4B (ENSSFOG00015016313)	ENSSFOG00015016208	MYBPC2 (ENSSFOG00015016018)	ccndx (ENSSFOG00015015967)	ENSSFOG00015015946	PPFIA3 (ENSSFOG00015015921)	ENSSFOG00015015899	ENSSFOG00015015885	ENSSFOG00015015876	ENSSFOG00015015864	ENSSFOG00015015854	ENSSFOG00015025549	lin7b (ENSSFOG00015024811)
P. kingsleyae	MODERN SPECIES	348																ENSPKIG00000003741 ##22	ENSPKIG00000003779	SYT3 (ENSPKIG00000003864)	LRRC4B (ENSPKIG00000003914)	ENSPKIG00000003944	ENSPKIG00000004008	ENSPKIG00000004155	NUCB1 (ENSPKIG00000004168)	ENSPKIG00000004199	PPFIA3 (ENSPKIG00000004289)	ENSPKIG00000004439	fgf21 (ENSPKIG00000004452)	ENSPKIG00000004461	ENSPKIG00000004475	ENSPKIG00000004489	ENSPKIG00000004513
Clupeocephala	ANCESTRAL SPECIES	60	ENSGT00390000000050	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a	ENSGT00390000009109	ENSGT00940000154612	ENSGT00730000112732	ENSGT00940000165280.a.b	ENSGT00940000164067.B	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT01050000244900.a.b.g	ENSGT00390000007725.B.c	ENSGT01050000244900.a.b.f.a	ENSGT00940000166365	ENSGT00940000164717.b
Otomorpha	ANCESTRAL SPECIES	121	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000154612	ENSGT00940000164067.B	ENSGT00530000063725.o	ENSGT00940000161854.b	ENSGT00990000205603	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b	ENSGT00940000161346
Clupeiformes	ANCESTRAL SPECIES	98	ENSGT00940000153861.b.b	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B.y	ENSGT00530000063725.o	ENSGT00940000164067.B.z	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365
Denticle herring	MODERN SPECIES	17	ENSDCDG00000006566	ENSDCDG00000006519	ENSDCDG00000006500	ENSDCDG00000006490	ENSDCDG00000006477	ENSDCDG00000006468	ENSDCDG00000006456	ENSDCDG00000006436	ENSDCDG00000006408	ENSDCDG00000006376	cldni (ENSDCDG00000006356)	ppp1caa (ENSDCDG00000017475)	ENSDCDG00000017453	ENSDCDG00000017449	ENSDCDG00000017445	ENSDCDG00000017442 ##22	ENSDCDG00000017437	SYT3 (ENSDCDG00000017418)	med25 (ENSDCDG00000017355)	LRRC4B (ENSDCDG00000017347)	mybpc2a (ENSDCDG00000016848)	emc10 (ENSDCDG00000016802)	zgc:195001 (ENSDCDG00000016798)	ENSDCDG00000016796	tbc1d17 (ENSDCDG00000016294)	ccndx (ENSDCDG00000016261)	nucb1 (ENSDCDG00000015485)	PPFIA3 (ENSDCDG00000013716)	ENSDCDG00000013691	ENSDCDG00000013610	ENSDCDG00000013583
Atlantic herring	MODERN SPECIES		zgc:153292 (ENSCHAG00000000014)	elob (ENSCHAG00000000015)	ENSCHAG00000000016	ENSCHAG00000000017	ENSCHAG00000000018	ENSCHAG00000000019	ENSCHAG00000000020	ENSCHAG00000000021	ENSCHAG00000000022	paqr4a (ENSCHAG00000000023)	coro1a (ENSCHAG00000000024)	cldni (ENSCHAG00000000025)	ppp1caa (ENSCHAG00000000026)	ENSCHAG00000000027	ENSCHAG00000000028	ENSCHAG00000000033 ##22	SYT3 (ENSCHAG00000000035)	ENSCHAG00000000036	ENSCHAG00000000037	med25 (ENSCHAG00000000038)	LRRC4B (ENSCHAG00000000039)	mybpc2a (ENSCHAG00000000042)	emc10 (ENSCHAG00000000043)	zgc:195001 (ENSCHAG00000000044)	ENSCHAG00000000045	tbc1d17 (ENSCHAG00000000046)	ccndx (ENSCHAG00000000047)	nucb1 (ENSCHAG00000000048)	PPFIA3 (ENSCHAG00000000049)	ENSCHAG00000000060	ENSCHAG00000000061
Otophysi	ANCESTRAL SPECIES	57	ENSGT00940000154937	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000154612	ENSGT00940000164067.B.w	ENSGT00940000164067.B.x	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000167425	ENSGT00940000164717.b
Characiphysae	ANCESTRAL SPECIES	105	ENSGT00940000154776	ENSGT00940000154937	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B.w	ENSGT00940000164067.B.x	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000167425	ENSGT00940000166365	ENSGT00940000164717.b
Channel catfish	MODERN SPECIES	11	COX6A (ENSIPUG00000008523)	prf1.1 (ENSIPUG00000008551)	prf1.9 (ENSIPUG00000008640)	prf1.9 (ENSIPUG00000008649)	prf1.9 (ENSIPUG00000008671)	prf1.9 (ENSIPUG00000008730)	prf1.9 (ENSIPUG00000008745)	prf1.9 (ENSIPUG00000008771)	prf1.9 (ENSIPUG00000008801)	paqr4a (ENSIPUG00000008818)	coro1a (ENSIPUG00000008832)	cldni (ENSIPUG00000008849)	ppp1caa (ENSIPUG00000008878)	ENSIPUG00000009028	ENSIPUG00000009044	ENSIPUG00000009101 ##22	ENSIPUG00000009140	syt3 (ENSIPUG00000009161)	med25 (ENSIPUG00000009196)	lrrc4b (ENSIPUG00000009223)	mybpc2 (ENSIPUG00000009289)	emc10 (ENSIPUG00000009505)	zgc:195001 (ENSIPUG00000009528)	akt1s1 (ENSIPUG00000009544)	TBC1D17 (ENSIPUG00000009579)	ccndx (ENSIPUG00000009637)	nucb1 (ENSIPUG00000009663)	PPFIA3 (ENSIPUG00000009786)	ENSIPUG00000009806	ENSIPUG00000009812	ENSIPUG00000009830
Characiphysae_b	ANCESTRAL SPECIES	118	ENSGT00940000154776	ENSGT00940000154937	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000154612	ENSGT00940000164067.B.w	ENSGT00940000164067.B.x	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000167425	ENSGT00940000164717.b
Electric eel	MODERN SPECIES	902															ENSEEEG00000021370	ENSEEEG00000021378 ##22
Characoidei	ANCESTRAL SPECIES	112	ENSGT00940000154776	ENSGT00940000154937	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000154612	ENSGT00940000164067.B.w	ENSGT00940000164067.B.x	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000167425	ENSGT00940000164717.b
Mexicana tetra	MODERN SPECIES	11	ENSAMXG00000031701	ENSAMXG00000029964	ENSAMXG00000041050	ENSAMXG00000008691	ENSAMXG00000008672	prf1.1 (ENSAMXG00000041986)	prf1.9 (ENSAMXG00000008604)	prf1.9 (ENSAMXG00000041068)	paqr4a (ENSAMXG00000008597)	coro1a (ENSAMXG00000008438)	cldni (ENSAMXG00000043959)	ppp1caa (ENSAMXG00000008239)	ENSAMXG00000038231	ENSAMXG00000034285	SHANK1 (ENSAMXG00000034909)	ENSAMXG00000007700 ##22	SYT3 (ENSAMXG00000009637)	ENSAMXG00000025956	med25 (ENSAMXG00000009647)	LRRC4B (ENSAMXG00000041136)	ENSAMXG00000033629	ENSAMXG00000034645	mybpc2a (ENSAMXG00000009669)	emc10 (ENSAMXG00000030437)	zgc:195001 (ENSAMXG00000034741)	ENSAMXG00000034016	tbc1d17 (ENSAMXG00000018030)	ccndx (ENSAMXG00000038744)	nucb1 (ENSAMXG00000032702)	GRID2IP (ENSAMXG00000013193)	slc5a11 (ENSAMXG00000040127)
Red-bellied piranha	MODERN SPECIES	50	elob (ENSPNAG00000019290)	arl6ip1 (ENSPNAG00000019316)	smg1 (ENSPNAG00000019632)	clec19a (ENSPNAG00000019660)	SYT17 (ENSPNAG00000019679)	ITPRIPL2 (ENSPNAG00000019689)	prf1.1 (ENSPNAG00000019697)	prf1.9 (ENSPNAG00000019701)	paqr4a (ENSPNAG00000019712)	coro1a (ENSPNAG00000019748)	cldni (ENSPNAG00000019763)	ENSPNAG00000019777	ppp1caa (ENSPNAG00000019813)	ENSPNAG00000019859	SHANK1 (ENSPNAG00000019885)	ENSPNAG00000019918 ##22
Cyprinoidei	ANCESTRAL SPECIES	1	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000154612	ENSGT00730000112732	ENSGT00940000164067.B.w	ENSGT00940000164067.B.x	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000167425	ENSGT00940000164717.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	22	ENSGT00940000156913.a.b	ENSGT00940000164286.j.a.b.b.g	ENSGT00940000164286.j.a.a.b.b	ENSGT01050000244827.A.d	ENSGT00940000158939.a	ENSGT00940000163133.j.b	ENSGT00940000154776.y	ENSGT00940000154937.pb	ENSGT00940000154348.c.a.a.g.b	ENSGT00390000009109.f	ENSGT00940000160628.d	ENSGT00920000149270.d	ENSGT00940000164151.a.b.d	ENSGT00940000161700.b.b	ENSGT00940000153561.b.a.b.a.a.t	ENSGT00950000182973.b.b.c.a ##22	ENSGT00940000161770.d	ENSGT00940000160439.u.a	ENSGT00940000160261.g.a	ENSGT00940000160092.B.r	ENSGT00390000004520.j	ENSGT00930000151196.b.b	ENSGT00390000017397.a.b	ENSGT00940000158989.m	ENSGT00940000167404.a	ENSGT00390000001927.b.a	ENSGT01050000244900.a.b.f.a.h	ENSGT00390000007725.B.c.r	ENSGT00940000166365.h	ENSGT00940000167425.c	ENSGT00940000164717.b.h
Cyprininae_a	ANCESTRAL SPECIES	54	ENSGT00940000163133.j.b	ENSGT00940000154776.y	ENSGT00940000154937.pb	ENSGT00970000197051	ENSGT00940000154348.c.a.a.g.b	ENSGT00390000009109.f	ENSGT00940000154612.f	ENSGT00940000164067.B.w.b	ENSGT00940000164067.B.x.f	ENSGT00940000157978.a.a	ENSGT00940000160628.d	ENSGT00920000149270.d	ENSGT00940000164151.a.b.d	ENSGT00940000161700.b.b	ENSGT00940000153561.b.a.b.a.a.t	ENSGT00950000182973.b.b.c.a ##22	ENSGT00940000161770.d	ENSGT00940000160439.u.a	ENSGT00940000160261.g.a	ENSGT00940000160092.B.r	ENSGT00390000004520.j	ENSGT00930000151196.b.b	ENSGT00390000017397.a.b	ENSGT00940000158989.m	ENSGT00940000167404.a	ENSGT00390000001927.b.a	ENSGT01050000244900.a.b.f.a.h	ENSGT00390000007725.B.c.r	ENSGT00940000166365.h	ENSGT00940000164717.b.h	ENSGT00940000161346.a.a
Common carp reference	MODERN SPECIES	3	smg1 (ENSCCRG00000000457)	arl6ip1 (ENSCCRG00000000340)	ENSCCRG00000000320	ENSCCRG00000000305	ENSCCRG00000063002	ENSCCRG00000000273	cox6a2 (ENSCCRG00000011511)	prf1.1 (ENSCCRG00000081480)	prf1.9 (ENSCCRG00000011499)	paqr4a (ENSCCRG00000065581)	coro1a (ENSCCRG00000002346)	cldni (ENSCCRG00000002326)	ppp1caa (ENSCCRG00000067497)	ENSCCRG00000002319	SHANK1 (ENSCCRG00000074616)	ENSCCRG00000047753 ##22	ENSCCRG00000073621	med25 (ENSCCRG00000028304)	LRRC4B (ENSCCRG00000065603)	mybpc2a (ENSCCRG00000067938)	emc10 (ENSCCRG00000073377)	ENSCCRG00000001396	zgc:195001 (ENSCCRG00000035267)	ENSCCRG00000030236	tbc1d17 (ENSCCRG00000030273)	ccndx (ENSCCRG00000030614)	nucb1 (ENSCCRG00000030622)	ENSCCRG00000030639	ENSCCRG00000031144	ENSCCRG00000019040	ENSCCRG00000069774
Golden-line barbel	MODERN SPECIES	899	elob (ENSSGRG00000000817)	ENSSGRG00000000815	ENSSGRG00000000809	cox6a2 (ENSSGRG00000000805)	ENSSGRG00000000804	prf1.1 (ENSSGRG00000000803)	ENSSGRG00000000802	paqr4a (ENSSGRG00000000800)	paqr4a (ENSSGRG00000000799)	coro1a (ENSSGRG00000000674)	cldni (ENSSGRG00000000665)	ppp1caa (ENSSGRG00000000320)	kmt5c (ENSSGRG00000052255)	ENSSGRG00000052252	ENSSGRG00000052251	ENSSGRG00000052247 ##22	SYT3 (ENSSGRG00000052241)	med25 (ENSSGRG00000052201)	LRRC4B (ENSSGRG00000052192)	mybpc2a (ENSSGRG00000052069)	emc10 (ENSSGRG00000052056)	tbc1d17 (ENSSGRG00000052027)	ccndx (ENSSGRG00000052025)	nucb1 (ENSSGRG00000052018)	PPFIA3 (ENSSGRG00000051998)	ENSSGRG00000051996	ENSSGRG00000051995
Goldfish	MODERN SPECIES	22	clec19a (ENSCARG00000004980)	smg1 (ENSCARG00000005024)	arl6ip1 (ENSCARG00000005505)	ENSCARG00000005511	elob (ENSCARG00000005517)	ENSCARG00000005522	ENSCARG00000005532	cox6a2 (ENSCARG00000005543)	prf1.1 (ENSCARG00000005553)	paqr4a (ENSCARG00000005559)	coro1a (ENSCARG00000005577)	cldni (ENSCARG00000005597)	ppp1caa (ENSCARG00000005607)	ENSCARG00000005852	SHANK1 (ENSCARG00000005913)	ENSCARG00000005936 ##22	SYT3 (ENSCARG00000005971)	med25 (ENSCARG00000006019)	ENSCARG00000006084	ENSCARG00000006088	LRRC4B (ENSCARG00000006096)	mybpc2a (ENSCARG00000006165)	emc10 (ENSCARG00000006666)	zgc:195001 (ENSCARG00000006696)	ENSCARG00000021002	tbc1d17 (ENSCARG00000021144)	ccndx (ENSCARG00000024227)	nucb1 (ENSCARG00000024251)	PPFIA3 (ENSCARG00000024692)	ENSCARG00000024801	ENSCARG00000024810
Cyprininae	ANCESTRAL SPECIES	52	ENSGT00730000114636	ENSGT00390000009109.e	ENSGT00940000154612.f	ENSGT00940000164067.B.w.b	ENSGT00940000157978.a.a	ENSGT00730000112732	ENSGT00940000154612.e	ENSGT00940000164067.B.w.a	ENSGT00940000164067.B.x	ENSGT00940000157978.a.b	ENSGT00940000160628.c	ENSGT00920000149270.c	ENSGT00940000164151.a.b.c	ENSGT00940000161700.b.a	ENSGT00940000153561.b.a.b.a.a.s	ENSGT00950000182973.b.b.c.b ##22	ENSGT00940000161770.c	ENSGT00940000160439.u.b	ENSGT00940000160261.g.b	ENSGT00940000160092.B.q	ENSGT00390000004520.i	ENSGT00930000151196.b.a	ENSGT00390000017397.a.a	ENSGT00940000158989.n	ENSGT00940000167404.b	ENSGT00390000001927.b.b	ENSGT01050000244900.a.b.f.a.g	ENSGT00390000007725.B.c.q	ENSGT00940000166365.g	ENSGT00940000167425.d	ENSGT00940000164717.b.g
Goldfish	MODERN SPECIES	20	smg1 (ENSCARG00000020382)	arl6ip1 (ENSCARG00000020314)	ENSCARG00000020304	zgc:153292 (ENSCARG00000020252)	elob (ENSCARG00000020233)	ENSCARG00000020225	ENSCARG00000020213	cox6a2 (ENSCARG00000020201)	prf1.1 (ENSCARG00000020193)	prf1.9 (ENSCARG00000020168)	paqr4a (ENSCARG00000020160)	coro1a (ENSCARG00000020095)	cldni (ENSCARG00000020080)	ppp1caa (ENSCARG00000020020)	ENSCARG00000020000	ENSCARG00000019957 ##22	SYT3 (ENSCARG00000019948)	med25 (ENSCARG00000019806)	LRRC4B (ENSCARG00000019790)	mybpc2a (ENSCARG00000017331)	emc10 (ENSCARG00000017213)	zgc:195001 (ENSCARG00000017206)	ENSCARG00000017199	tbc1d17 (ENSCARG00000015200)	ccndx (ENSCARG00000015103)	nucb1 (ENSCARG00000015051)	PPFIA3 (ENSCARG00000014406)	ENSCARG00000014384	ENSCARG00000013987	fgf21 (ENSCARG00000039571)	ENSCARG00000039561
Cyprininae_a	ANCESTRAL SPECIES	90	ENSGT00940000154937.qb.a	ENSGT00940000166194.f	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.g.a	ENSGT00730000114636	ENSGT00390000009109.e	ENSGT00940000154612.e	ENSGT00940000164067.B.w.a	ENSGT00940000164067.B.x.e	ENSGT00940000157978.a.b	ENSGT00940000160628.c	ENSGT00920000149270.c	ENSGT00940000164151.a.b.c	ENSGT00940000161700.b.a	ENSGT00940000153561.b.a.b.a.a.s.a	ENSGT00950000182973.b.b.c.b ##22	ENSGT00940000161770.c	ENSGT00940000160439.u.b	ENSGT00940000160261.g.b	ENSGT00940000160092.B.q	ENSGT00390000004520.i	ENSGT00930000151196.b.a	ENSGT00390000017397.a.a	ENSGT00940000158989.n	ENSGT00940000167404.b	ENSGT00390000001927.b.b	ENSGT01050000244900.a.b.f.a.g	ENSGT00390000007725.B.c.q	ENSGT00940000166365.g	ENSGT00940000167425.d	ENSGT00940000164717.b.g
Common carp reference	MODERN SPECIES	1	ENSCCRG00000075154	zgc:153292 (ENSCCRG00000002967)	elob (ENSCCRG00000002927)	ENSCCRG00000002911	ENSCCRG00000068322	ENSCCRG00000002870	cox6a2 (ENSCCRG00000002846)	ENSCCRG00000059263	prf1.1 (ENSCCRG00000002829)	prf1.9 (ENSCCRG00000002804)	coro1a (ENSCCRG00000078848)	cldni (ENSCCRG00000060442)	ppp1caa (ENSCCRG00000002146)	ENSCCRG00000002135	SHANK1 (ENSCCRG00000079045)	ENSCCRG00000020467 ##22	SYT3 (ENSCCRG00000028277)	med25 (ENSCCRG00000028263)	LRRC4B (ENSCCRG00000012296)	mybpc2a (ENSCCRG00000051357)	emc10 (ENSCCRG00000051396)	zgc:195001 (ENSCCRG00000061178)	ENSCCRG00000001613	tbc1d17 (ENSCCRG00000035596)	ccndx (ENSCCRG00000006349)	nucb1 (ENSCCRG00000006325)	ENSCCRG00000004532	ENSCCRG00000080904	ENSCCRG00000024312	ENSCCRG00000024307	ENSCCRG00000053880
Golden-line barbel	MODERN SPECIES	415															ENSSGRG00000012771	ENSSGRG00000012774 ##22	SYT3 (ENSSGRG00000012784)	ENSSGRG00000012811	med25 (ENSSGRG00000012812)	LRRC4B (ENSSGRG00000012814)	mybpc2a (ENSSGRG00000012830)	emc10 (ENSSGRG00000013445)	zgc:195001 (ENSSGRG00000013446)	ENSSGRG00000013448	tbc1d17 (ENSSGRG00000013449)	ccndx (ENSSGRG00000013564)	nucb1 (ENSSGRG00000013566)	PPFIA3 (ENSSGRG00000013593)	ENSSGRG00000013722	ENSSGRG00000013723	fgf21 (ENSSGRG00000013726)
Zebrafish	MODERN SPECIES	18	elob (ENSDARG00000037980)	ENSDARG00000097471	ENSDARG00000097740	ENSDARG00000096714	ENSDARG00000078083	cox6a2 (ENSDARG00000054588)	ENSDARG00000091783	prf1.1 (ENSDARG00000030394)	prf1.9 (ENSDARG00000060662)	paqr4a (ENSDARG00000076960)	coro1a (ENSDARG00000054610)	cldni (ENSDARG00000054616)	ppp1caa (ENSDARG00000003486)	kmt5c (ENSDARG00000075461)	ENSDARG00000060539	ENSDARG00000054645 ##22	SYT3 (ENSDARG00000075830)	ENSDARG00000070465	med25 (ENSDARG00000038005)	LRRC4B (ENSDARG00000004597)	mybpc2a (ENSDARG00000030157)	emc10 (ENSDARG00000054793)	zgc:195001 (ENSDARG00000070484)	ENSDARG00000074667	tbc1d17 (ENSDARG00000005927)	ccndx (ENSDARG00000019741)	nucb1 (ENSDARG00000054833)	PPFIA3 (ENSDARG00000077053)	ENSDARG00000086571	hsd17b14 (ENSDARG00000054842)	bcat2 (ENSDARG00000054849)
Euteleosteomorpha	ANCESTRAL SPECIES		ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000154612	ENSGT00730000112732	ENSGT00940000165280.a.b	ENSGT00940000164067.B	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT01050000244900.a.b.g	ENSGT00390000007725.B.c	ENSGT00940000155379.h	ENSGT01050000244900.a.b.f.a	ENSGT00940000166365
Acanthomorphata	ANCESTRAL SPECIES	2	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000154612	ENSGT00730000112732	ENSGT00940000165280.a.b	ENSGT00940000164067.B	ENSGT00530000063725.o	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000155379.h	ENSGT00940000164717.b
Euacanthomorphacea	ANCESTRAL SPECIES	5	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000154612	ENSGT00730000112732	ENSGT00940000165280.a.b	ENSGT00940000164067.B	ENSGT00530000063725.o	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b	ENSGT00940000161346
Percomorphaceae	ANCESTRAL SPECIES	3	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000154612	ENSGT00730000112732	ENSGT00940000165280.a.b	ENSGT00940000164067.B	ENSGT00530000063725.o	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b	ENSGT00940000161346
Percomorphaceae_B	ANCESTRAL SPECIES	2	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00730000114636	ENSGT00940000165280.a.b	ENSGT00390000009109	ENSGT00940000154612	ENSGT00730000112732	ENSGT00940000164067.B	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b	ENSGT00940000161346
Ovalentaria	ANCESTRAL SPECIES	1	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00730000114636	ENSGT00940000165280.a.b	ENSGT00390000009109	ENSGT00940000154612	ENSGT00730000112732	ENSGT00940000164067.B	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT00940000176281	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b
Atherinomorphae	ANCESTRAL SPECIES	6	ENSGT00390000000050	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B.b	ENSGT00940000164067.B.a	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT00940000176281	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b
Cyprinodontiformes	ANCESTRAL SPECIES	3	ENSGT00390000000050	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B.b	ENSGT00940000164067.B.a	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT00940000176281	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b
Aplocheiloidei	ANCESTRAL SPECIES	7	ENSGT00520000055626.b	ENSGT00390000000050	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B.b	ENSGT00940000164067.B.a	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT00940000176281	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b
Mangrove rivulus	MODERN SPECIES	47	rusf1 (ENSKMAG00000009264)	ENSKMAG00000009243	elob (ENSKMAG00000009224)	ENSKMAG00000009196	ENSKMAG00000009179	ENSKMAG00000009128	ENSKMAG00000009098	ENSKMAG00000009081	ENSKMAG00000009052	paqr4a (ENSKMAG00000009034)	coro1a (ENSKMAG00000008980)	cldni (ENSKMAG00000008944)	ppp1caa (ENSKMAG00000008911)	ENSKMAG00000008885	SHANK1 (ENSKMAG00000008773)	ENSKMAG00000008698 ##22	ENSKMAG00000008631	SYT3 (ENSKMAG00000008584)	ENSKMAG00000008559	med25 (ENSKMAG00000008497)	LRRC4B (ENSKMAG00000008480)	mybpc2a (ENSKMAG00000008327)	emc10 (ENSKMAG00000008263)	zgc:195001 (ENSKMAG00000008241)	ENSKMAG00000008203	tbc1d17 (ENSKMAG00000008183)	ccndx (ENSKMAG00000007993)	nucb1 (ENSKMAG00000007898)	ENSKMAG00000007878	PPFIA3 (ENSKMAG00000007750)	ENSKMAG00000007708
Turquoise killifish	MODERN SPECIES	1614	pheta2 (ENSNFUG00015000680)	rusf1 (ENSNFUG00015000638)	Nfu_g_1_007714 (ENSNFUG00015000617)	elob (ENSNFUG00015000609)	ENSNFUG00015000606	ARMC5 (ENSNFUG00015000594)	ENSNFUG00015000580	ENSNFUG00015000541	ENSNFUG00015000504	BX649554.3 (ENSNFUG00015000480)	CORO1A (ENSNFUG00015000425)	cldni (ENSNFUG00015000371)	ppp1caa (ENSNFUG00015000249)	SUV420H2 (ENSNFUG00015000147)	SHANK1 (ENSNFUG00015000118)	Nfu_g_1_007590 (ENSNFUG00015000091) ##22	SYT3 (ENSNFUG00015005131)	med25 (ENSNFUG00015005056)	LRRC4BA (ENSNFUG00015005031)	mybpc2a (ENSNFUG00015003859)	emc10 (ENSNFUG00015003690)	Nfu_g_1_007666 (ENSNFUG00015003688)	AKT1S1 (ENSNFUG00015003687)	rps11 (ENSNFUG00015003681)	baxa (ENSNFUG00015003676)	BAX (ENSNFUG00015003674)	Nfu_g_1_007680 (ENSNFUG00015003671)	gpatch8 (ENSNFUG00015003665)	gosr2 (ENSNFUG00015003660)	wnt9b (ENSNFUG00015003655)	ENSNFUG00015003650
Cyprinodontoidei	ANCESTRAL SPECIES	18	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B.b	ENSGT00940000164067.B.a	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270.l	ENSGT00920000149270.k	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT00940000177428.c.a	ENSGT00940000176281	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365
NAME_4	ANCESTRAL SPECIES	47	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B.b	ENSGT00940000164067.B.a	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270.l	ENSGT00920000149270.k	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT00940000177428.c.a	ENSGT00940000176281	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365
Mummichog	MODERN SPECIES	308						ENSFHEG00000005566	ENSFHEG00000005557	paqr4a (ENSFHEG00000005551)	coro1a (ENSFHEG00000005540)	cldni (ENSFHEG00000005507)	cldni (ENSFHEG00000005485)	cldni (ENSFHEG00000005481)	ppp1caa (ENSFHEG00000005474)	ENSFHEG00000005454	ENSFHEG00000005442	ENSFHEG00000005399 ##22	SYT3 (ENSFHEG00000005378)	med25 (ENSFHEG00000005351)	LRRC4B (ENSFHEG00000000142)	mybpc2a (ENSFHEG00000005312)	emc10 (ENSFHEG00000005206)
Sheepshead minnow	MODERN SPECIES	136		KLHL11 (ENSCVAG00000016663)	NT5C3B (ENSCVAG00000000420)	FKBP10 (ENSCVAG00000016430)	p3h4 (ENSCVAG00000016419)	ADAM11 (ENSCVAG00000016402)	42sp43 (ENSCVAG00000016375)	STAC2 (ENSCVAG00000016363)	FBXL20 (ENSCVAG00000016337)	CDK12 (ENSCVAG00000016251)	NEUROD2 (ENSCVAG00000016236)	ppp1r1b (ENSCVAG00000016231)	ppp1caa (ENSCVAG00000016219)	ENSCVAG00000016186	ENSCVAG00000016178	ENSCVAG00000016115 ##22	SYT3 (ENSCVAG00000016104)	med25 (ENSCVAG00000016076)	LRRC4B (ENSCVAG00000016049)	mybpc2a (ENSCVAG00000016035)	ENSCVAG00000015933	emc10 (ENSCVAG00000015926)	zgc:195001 (ENSCVAG00000015912)	ENSCVAG00000015907	tbc1d17 (ENSCVAG00000015887)	ccndx (ENSCVAG00000015590)	nucb1 (ENSCVAG00000015577)	ENSCVAG00000015543	ENSCVAG00000015539	ENSCVAG00000015527	ENSCVAG00000015519
Poeciliinae	ANCESTRAL SPECIES	1	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B.b	ENSGT00940000164067.B.a	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270.l.d.b.a.b	ENSGT00920000149270.l.d.b.b.a.a.a	ENSGT00920000149270.k	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT00940000177428.c.a	ENSGT00940000176281.e	ENSGT00940000176281.f	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c
Poecilia	ANCESTRAL SPECIES	8	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B.b	ENSGT00940000164067.B.a	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270.l.d.a	ENSGT00920000149270.l.d.b.a.b	ENSGT00920000149270.l.d.b.b.a.a.b.b	ENSGT00920000149270.l.d.b.b.a.a.a	ENSGT00920000149270.l.d.b.a.a	ENSGT00920000149270.k	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT00940000176281.e	ENSGT00940000176281.f	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365
NAME_6	ANCESTRAL SPECIES	18	ENSGT00940000154612	ENSGT00730000112732	ENSGT00940000164067.B.b	ENSGT00940000164067.B.a	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270.l.d.a	ENSGT00920000149270.l.d.b.a.b	ENSGT00920000149270.l.d.b.b.a.a.b.b	ENSGT00920000149270.l.d.b.b.a.a.a	ENSGT00920000149270.l.d.b.a.a	ENSGT00920000149270.k	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT00940000177428.c.a	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b
Sailfin molly	MODERN SPECIES	1138															ENSPLAG00000021109	ENSPLAG00000021121 ##22	SYT3 (ENSPLAG00000021156)	med25 (ENSPLAG00000021163)
Amazon molly	MODERN SPECIES	384	coro1a (ENSPFOG00000013220)	cldni (ENSPFOG00000013214)	cldni (ENSPFOG00000013213)	cldni (ENSPFOG00000013212)	cldni (ENSPFOG00000013209)	cldni (ENSPFOG00000013207)	cldni (ENSPFOG00000024257)	cldni (ENSPFOG00000013206)	cldni (ENSPFOG00000022402)	cldni (ENSPFOG00000013204)	cldni (ENSPFOG00000013203)	cldni (ENSPFOG00000013158)	ppp1caa (ENSPFOG00000013102)	kmt5c (ENSPFOG00000013078)	SHANK1 (ENSPFOG00000012724)	ENSPFOG00000012668 ##22	SYT3 (ENSPFOG00000012535)	med25 (ENSPFOG00000012284)	LRRC4B (ENSPFOG00000012266)	mybpc2a (ENSPFOG00000011743)	emc10 (ENSPFOG00000011637)	zgc:195001 (ENSPFOG00000011613)	ENSPFOG00000011601	tbc1d17 (ENSPFOG00000011446)	ccndx (ENSPFOG00000011415)	nucb1 (ENSPFOG00000011312)	ENSPFOG00000010747	PPFIA3 (ENSPFOG00000010777)	ENSPFOG00000023272	ENSPFOG00000010605	ENSPFOG00000010593
Guppy	MODERN SPECIES	460	coro1a (ENSPREG00000010567)	cldni (ENSPREG00000010599)	cldni (ENSPREG00000010610)	cldni (ENSPREG00000010626)	cldni (ENSPREG00000010642)	cldni (ENSPREG00000010646)	cldni (ENSPREG00000010650)	cldni (ENSPREG00000010653)	ENSPREG00000010662	ENSPREG00000010685	cldni (ENSPREG00000010706)	ppp1caa (ENSPREG00000010716)	ENSPREG00000010727	ENSPREG00000010745	ENSPREG00000010787	ENSPREG00000010817 ##22	SYT3 (ENSPREG00000010855)	med25 (ENSPREG00000010901)	LRRC4B (ENSPREG00000010928)	mybpc2a (ENSPREG00000010950)	emc10 (ENSPREG00000011021)	zgc:195001 (ENSPREG00000011040)	ENSPREG00000011051	tbc1d17 (ENSPREG00000011062)	ccndx (ENSPREG00000011084)	nucb1 (ENSPREG00000011100)	ENSPREG00000011130	ENSPREG00000011145	PPFIA3 (ENSPREG00000011162)	ENSPREG00000011234	ENSPREG00000011246
Platyfish	MODERN SPECIES	7	ENSXMAG00000028541	ENSXMAG00000018110	ENSXMAG00000026510	ENSXMAG00000018101	ENSXMAG00000018098	paqr4a (ENSXMAG00000013658)	coro1a (ENSXMAG00000013664)	cldni (ENSXMAG00000021200)	cldni (ENSXMAG00000013682)	cldni (ENSXMAG00000024426)	cldni (ENSXMAG00000023238)	cldni (ENSXMAG00000019964)	ppp1caa (ENSXMAG00000022939)	ENSXMAG00000023229	ENSXMAG00000018055	ENSXMAG00000018034 ##22	SYT3 (ENSXMAG00000018019)	med25 (ENSXMAG00000018008)	LRRC4B (ENSXMAG00000018005)	mybpc2a (ENSXMAG00000017975)	emc10 (ENSXMAG00000014220)	zgc:195001 (ENSXMAG00000014215)	ENSXMAG00000014211	tbc1d17 (ENSXMAG00000014157)	ccndx (ENSXMAG00000014156)	nucb1 (ENSXMAG00000014122)	ENSXMAG00000028493	ENSXMAG00000022047	ENSXMAG00000029891	PPFIA3 (ENSXMAG00000014071)	ENSXMAG00000025355
Oryzias	ANCESTRAL SPECIES		ENSGT00390000000050	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B.b	ENSGT00940000164067.B.a	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT00940000176281	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b
Oryzias_b	ANCESTRAL SPECIES	11	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B.b	ENSGT00940000164067.B.a.a.b	ENSGT00940000164067.B.a.b	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000155379.h	ENSGT00940000164717.b	ENSGT00940000161346
Javanese ricefish	MODERN SPECIES	22	zgc:163143 (ENSOJAG00000014994)	elob (ENSOJAG00000015041)	ENSOJAG00000015058	ENSOJAG00000015063	ENSOJAG00000015076	ENSOJAG00000015097	ENSOJAG00000015114	ENSOJAG00000015206	ENSOJAG00000015214	ENSOJAG00000015233	paqr4a (ENSOJAG00000015350)	coro1a (ENSOJAG00000015376)	cldni (ENSOJAG00000015613)	ppp1caa (ENSOJAG00000015649)	kmt5c (ENSOJAG00000016116)	ENSOJAG00000016275 ##22	SYT3 (ENSOJAG00000016333)	med25 (ENSOJAG00000000087)	LRRC4B (ENSOJAG00000000121)	mybpc2a (ENSOJAG00000000296)	emc10 (ENSOJAG00000000403)	zgc:195001 (ENSOJAG00000000409)	ENSOJAG00000000415	tbc1d17 (ENSOJAG00000000460)	ccndx (ENSOJAG00000000591)	nucb1 (ENSOJAG00000000596)	PPFIA3 (ENSOJAG00000000688)	ENSOJAG00000000889	ENSOJAG00000000900	hsd17b14 (ENSOJAG00000000924)	ENSOJAG00000000938
Indian medaka	MODERN SPECIES	9	ENSOMEG00000019372	ENSOMEG00000019342	ENSOMEG00000019325	ENSOMEG00000019276	ENSOMEG00000019258	ENSOMEG00000019169	ENSOMEG00000018907	ENSOMEG00000018879	ENSOMEG00000000493	paqr4a (ENSOMEG00000018848)	coro1a (ENSOMEG00000018836)	cldni (ENSOMEG00000018782)	ppp1caa (ENSOMEG00000018756)	ENSOMEG00000018718	ENSOMEG00000018667	ENSOMEG00000018606 ##22	SYT3 (ENSOMEG00000018514)	med25 (ENSOMEG00000018476)	LRRC4B (ENSOMEG00000018451)	mybpc2a (ENSOMEG00000018391)	emc10 (ENSOMEG00000018224)	zgc:195001 (ENSOMEG00000018171)	ENSOMEG00000018160	tbc1d17 (ENSOMEG00000018129)	ccndx (ENSOMEG00000018073)	nucb1 (ENSOMEG00000018053)	ENSOMEG00000018031	ENSOMEG00000018015	ENSOMEG00000017984	ENSOMEG00000017969	ENSOMEG00000017954
Oryzias_a	ANCESTRAL SPECIES	10	ENSGT00390000000050	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B.b	ENSGT00940000164067.B.a.c	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT00940000176281	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b
Chinese medaka	MODERN SPECIES	723	cd2bp2 (ENSOSIG00000006136)	ENSOSIG00000006137	rusf1 (ENSOSIG00000006140)	ENSOSIG00000006144	elob (ENSOSIG00000006146)	ENSOSIG00000006147	ENSOSIG00000006149	ENSOSIG00000006151	ENSOSIG00000006153	paqr4a (ENSOSIG00000006156)	coro1a (ENSOSIG00000006160)	cldni (ENSOSIG00000006188)	ppp1caa (ENSOSIG00000006192)	ENSOSIG00000006522	ENSOSIG00000006533	ENSOSIG00000006556 ##22	SYT3 (ENSOSIG00000006562)	med25 (ENSOSIG00000006566)	ENSOSIG00000006568	LRRC4B (ENSOSIG00000006569)	mybpc2a (ENSOSIG00000006597)	emc10 (ENSOSIG00000006706)	zgc:195001 (ENSOSIG00000006708)	ENSOSIG00000006709	tbc1d17 (ENSOSIG00000006711)	ccndx (ENSOSIG00000006919)	nucb1 (ENSOSIG00000006920)	PPFIA3 (ENSOSIG00000006944)	ENSOSIG00000010599	ENSOSIG00000010604	ENSOSIG00000010621
Japanese Medaka HdrR	MODERN SPECIES	22	ENSORLG00000027645	rusf1 (ENSORLG00000002128)	ENSORLG00000027012	ENSORLG00000002110	ENSORLG00000024607	ENSORLG00000002104	ENSORLG00000002089	ENSORLG00000002067	ENSORLG00000002062	paqr4a (ENSORLG00000027897)	cldni (ENSORLG00000002013)	coro1a (ENSORLG00000002046)	ppp1caa (ENSORLG00000002008)	ENSORLG00000029509	SHANK1 (ENSORLG00000001986)	ENSORLG00000001960 ##22	SYT3 (ENSORLG00000001935)	med25 (ENSORLG00000001922)	LRRC4B (ENSORLG00000001903)	ENSORLG00000025899	mybpc2a (ENSORLG00000001887)	emc10 (ENSORLG00000001842)	zgc:195001 (ENSORLG00000025527)	ENSORLG00000001832	tbc1d17 (ENSORLG00000001823)	ccndx (ENSORLG00000001767)	nucb1 (ENSORLG00000001739)	ENSORLG00000026218	ENSORLG00000001644	ENSORLG00000001599	ENSORLG00000001587
Ovalentaria_B	ANCESTRAL SPECIES		ENSGT00630000091000	ENSGT00390000000050	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00730000114636	ENSGT00940000154348.c.a.a.p	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT00940000176281	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b
Cichlidae	ANCESTRAL SPECIES	16	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000154612	ENSGT00940000164067.B.f	ENSGT00940000165280.a.b	ENSGT00940000164067.B.e	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT00940000176281	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	1	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000154612	ENSGT00940000164067.B.f	ENSGT00940000165280.a.b	ENSGT00940000164067.B.e	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT00940000176281	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	12	ENSGT00390000000050	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000154612	ENSGT00940000164067.B.f	ENSGT00940000164067.B.e.b	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT00940000176281	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b
Haplochromini	ANCESTRAL SPECIES	12	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000154612	ENSGT00940000164067.B.f	ENSGT00530000063725.o.u	ENSGT00940000164067.B.e.b	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT00940000176281	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b
Burton s mouthbrooder	MODERN SPECIES	314	ENSHBUG00000009037	elob (ENSHBUG00000009046)	ENSHBUG00000009053	ENSHBUG00000009057	ENSHBUG00000009121	cox6a2 (ENSHBUG00000009133)	ENSHBUG00000009142	ENSHBUG00000009490	paqr4a (ENSHBUG00000009514)	coro1a (ENSHBUG00000009540)	cldni (ENSHBUG00000009555)	ppp1caa (ENSHBUG00000009570)	ENSHBUG00000009584	ENSHBUG00000000930	ENSHBUG00000000834	ENSHBUG00000009668 ##22	SYT3 (ENSHBUG00000009700)	med25 (ENSHBUG00000009715)	LRRC4B (ENSHBUG00000009751)	mybpc2a (ENSHBUG00000009860)	emc10 (ENSHBUG00000009951)	zgc:195001 (ENSHBUG00000009960)	ENSHBUG00000009972	tbc1d17 (ENSHBUG00000009989)	ccndx (ENSHBUG00000009997)	nucb1 (ENSHBUG00000000256)	ENSHBUG00000010045	ENSHBUG00000010052	PPFIA3 (ENSHBUG00000010177)	ENSHBUG00000010189	ENSHBUG00000010456
Haplochromini_A	ANCESTRAL SPECIES	14	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000154612	ENSGT00940000164067.B.f	ENSGT00940000164067.B.e.a	ENSGT00940000164067.B.e.b	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT00940000176281	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b
Haplochromini_B	ANCESTRAL SPECIES	21	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000154612	ENSGT00940000164067.B.f	ENSGT00940000164067.B.e.a	ENSGT00940000164067.B.e.b	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT00940000176281	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b
Eastern happy	MODERN SPECIES	16	ENSACLG00000024465	elob (ENSACLG00000024460)	ENSACLG00000024454	ENSACLG00000024443	ENSACLG00000024405	ENSACLG00000024351	ENSACLG00000024069	ENSACLG00000024061	ENSACLG00000024041	paqr4a (ENSACLG00000024038)	coro1a (ENSACLG00000024002)	cldni (ENSACLG00000023994)	ppp1caa (ENSACLG00000023951)	ENSACLG00000023900	SHANK1 (ENSACLG00000023832)	ENSACLG00000023793 ##22	SYT3 (ENSACLG00000023742)	med25 (ENSACLG00000023717)	LRRC4B (ENSACLG00000023693)	mybpc2a (ENSACLG00000023628)	emc10 (ENSACLG00000023596)	zgc:195001 (ENSACLG00000023587)	ENSACLG00000023553	tbc1d17 (ENSACLG00000023471)	ccndx (ENSACLG00000023460)	nucb1 (ENSACLG00000023432)	ENSACLG00000023411	ENSACLG00000023349	PPFIA3 (ENSACLG00000023193)	ENSACLG00000023186	ENSACLG00000023064
Zebra mbuna	MODERN SPECIES	1107	ENSMZEG00005023177	ENSMZEG00005023178	ENSMZEG00005023180	cox6a2 (ENSMZEG00005023183)	ENSMZEG00005023184	ENSMZEG00005023186	ENSMZEG00005023189	ENSMZEG00005023192	ENSMZEG00005023194	paqr4a (ENSMZEG00005023197)	coro1a (ENSMZEG00005023199)	cldni (ENSMZEG00005023204)	ppp1caa (ENSMZEG00005023206)	ENSMZEG00005023207	ENSMZEG00005023210	ENSMZEG00005023226 ##22	SYT3 (ENSMZEG00005023229)	med25 (ENSMZEG00005023234)	LRRC4B (ENSMZEG00005023237)	mybpc2a (ENSMZEG00005023239)	emc10 (ENSMZEG00005023245)	zgc:195001 (ENSMZEG00005023248)	ENSMZEG00005023251	tbc1d17 (ENSMZEG00005023255)	ccndx (ENSMZEG00005023263)	nucb1 (ENSMZEG00005023265)	ENSMZEG00005023272	ENSMZEG00005023274	ENSMZEG00005023275	ENSMZEG00005023276	ENSMZEG00005023277
P. nyererei	MODERN SPECIES	313	elob (ENSPNYG00000014299)	ENSPNYG00000014318	ENSPNYG00000014330	ENSPNYG00000014347	cox6a2 (ENSPNYG00000014378)	ENSPNYG00000014399	ENSPNYG00000014437	ENSPNYG00000014448	ENSPNYG00000014458	paqr4a (ENSPNYG00000014494)	coro1a (ENSPNYG00000014515)	cldni (ENSPNYG00000014541)	ppp1caa (ENSPNYG00000014556)	ENSPNYG00000014570	SHANK1 (ENSPNYG00000014888)	ENSPNYG00000015700 ##22	SYT3 (ENSPNYG00000015716)	med25 (ENSPNYG00000015750)	LRRC4B (ENSPNYG00000015772)	mybpc2a (ENSPNYG00000015784)	emc10 (ENSPNYG00000015840)	zgc:195001 (ENSPNYG00000015897)	ENSPNYG00000015901	ENSPNYG00000015910	tbc1d17 (ENSPNYG00000015934)	ccndx (ENSPNYG00000015966)	nucb1 (ENSPNYG00000015983)	ENSPNYG00000016017	PPFIA3 (ENSPNYG00000016045)	ENSPNYG00000016101	ENSPNYG00000016115
Lyretail cichlid	MODERN SPECIES	387	elob (ENSNBRG00000005106)	ENSNBRG00000005123	ENSNBRG00000005130	ENSNBRG00000005149	cox6a2 (ENSNBRG00000005185)	ENSNBRG00000005197	ENSNBRG00000005211	ENSNBRG00000005277	paqr4a (ENSNBRG00000005324)	coro1a (ENSNBRG00000005338)	cldni (ENSNBRG00000005363)	ppp1caa (ENSNBRG00000005379)	ENSNBRG00000005410	ENSNBRG00000005435	SHANK1 (ENSNBRG00000005447)	ENSNBRG00000005579 ##22	ENSNBRG00000005702	SYT3 (ENSNBRG00000005719)	med25 (ENSNBRG00000005744)	ENSNBRG00000005793	LRRC4B (ENSNBRG00000005808)	mybpc2a (ENSNBRG00000005842)	emc10 (ENSNBRG00000005905)	zgc:195001 (ENSNBRG00000005935)	ENSNBRG00000005945	ENSNBRG00000005965	tbc1d17 (ENSNBRG00000005993)	ccndx (ENSNBRG00000006174)	nucb1 (ENSNBRG00000006225)	PPFIA3 (ENSNBRG00000006532)	ENSNBRG00000006594
Nile tilapia	MODERN SPECIES	16	pheta2 (ENSONIG00000009842)	cd2bp2 (ENSONIG00000009840)	ENSONIG00000032829	rusf1 (ENSONIG00000009838)	elob (ENSONIG00000009836)	ENSONIG00000028070	ENSONIG00000009834	ENSONIG00000009833	prf1.9 (ENSONIG00000009831)	paqr4a (ENSONIG00000009829)	coro1a (ENSONIG00000009820)	cldni (ENSONIG00000009826)	ppp1caa (ENSONIG00000042431)	ENSONIG00000034627	SHANK1 (ENSONIG00000031346)	ENSONIG00000009806 ##22	SYT3 (ENSONIG00000009802)	med25 (ENSONIG00000009791)	LRRC4B (ENSONIG00000009790)	mybpc2a (ENSONIG00000009781)	emc10 (ENSONIG00000009780)	ENSONIG00000029428	zgc:195001 (ENSONIG00000009779)	ENSONIG00000009777	tbc1d17 (ENSONIG00000009775)	ccndx (ENSONIG00000009771)	nucb1 (ENSONIG00000009768)	ENSONIG00000039503	ENSONIG00000030682	PPFIA3 (ENSONIG00000009757)	ENSONIG00000039165
Midas cichlid	MODERN SPECIES	550	ENSACIG00000006787	elob (ENSACIG00000006775)	ENSACIG00000006764	ENSACIG00000006760	ENSACIG00000006731	cox6a2 (ENSACIG00000006688)	ENSACIG00000006625	ENSACIG00000006576	ENSACIG00000006545	paqr4a (ENSACIG00000006537)	coro1a (ENSACIG00000006509)	cldni (ENSACIG00000006494)	ppp1caa (ENSACIG00000006483)	ENSACIG00000006460	ENSACIG00000006418	ENSACIG00000006382 ##22	SYT3 (ENSACIG00000006348)	med25 (ENSACIG00000006129)	ENSACIG00000006049	ENSACIG00000005985	ENSACIG00000005930
Pomacentridae	ANCESTRAL SPECIES	24	ENSGT00630000091000	ENSGT00390000000050	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT00940000176281	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b
Pomacentridae_A	ANCESTRAL SPECIES	15	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B.c	ENSGT00990000203866	ENSGT00940000164067.B.d.a	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT00940000176281	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b
Amphiprion	ANCESTRAL SPECIES	9	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B.c	ENSGT00990000203866	ENSGT00940000164067.B.d.a	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT00940000176281	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b
Orange clownfish	MODERN SPECIES	5	elob (ENSAPEG00000000397)	ENSAPEG00000000391	ENSAPEG00000000374	ENSAPEG00000000333	ENSAPEG00000021866	ENSAPEG00000021859	ENSAPEG00000021847	ENSAPEG00000021834	ENSAPEG00000021801	paqr4a (ENSAPEG00000021783)	coro1a (ENSAPEG00000021750)	cldni (ENSAPEG00000021733)	ppp1caa (ENSAPEG00000021710)	ENSAPEG00000021697	ENSAPEG00000021633	ENSAPEG00000021573 ##22	SYT3 (ENSAPEG00000021539)	med25 (ENSAPEG00000021464)	LRRC4B (ENSAPEG00000021448)	mybpc2a (ENSAPEG00000021389)	emc10 (ENSAPEG00000021337)	zgc:195001 (ENSAPEG00000021320)	ENSAPEG00000021301	tbc1d17 (ENSAPEG00000021240)	ccndx (ENSAPEG00000021207)	nucb1 (ENSAPEG00000021168)	ENSAPEG00000021152	PPFIA3 (ENSAPEG00000021034)	ENSAPEG00000020999	ENSAPEG00000020935	ENSAPEG00000020860
Clown anemonefish	MODERN SPECIES	2593																ENSAOCG00000009066 ##22
Spiny chromis	MODERN SPECIES	11	rusf1 (ENSAPOG00000018143)	ENSAPOG00000018155	elob (ENSAPOG00000018175)	ENSAPOG00000018186	ENSAPOG00000018202	cox6a2 (ENSAPOG00000018207)	ENSAPOG00000018288	ENSAPOG00000018336	ENSAPOG00000018411	paqr4a (ENSAPOG00000018419)	coro1a (ENSAPOG00000018478)	cldni (ENSAPOG00000018500)	ppp1caa (ENSAPOG00000018510)	ENSAPOG00000018528	ENSAPOG00000018618	ENSAPOG00000018710 ##22	SYT3 (ENSAPOG00000018776)	med25 (ENSAPOG00000018818)	LRRC4B (ENSAPOG00000018826)	mybpc2a (ENSAPOG00000018906)	emc10 (ENSAPOG00000018960)	zgc:195001 (ENSAPOG00000018976)	ENSAPOG00000018986	tbc1d17 (ENSAPOG00000018998)	ccndx (ENSAPOG00000019021)	nucb1 (ENSAPOG00000019077)	ENSAPOG00000019084	PPFIA3 (ENSAPOG00000019228)	ENSAPOG00000019245	ENSAPOG00000019326	ENSAPOG00000019338
Bicolor damselfish	MODERN SPECIES	1529																ENSSPAG00000011846 ##22	SYT3 (ENSSPAG00000011878)	med25 (ENSSPAG00000011907)	LRRC4B (ENSSPAG00000011971)
Percomorphaceae_C	ANCESTRAL SPECIES		ENSGT00390000000050	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B	ENSGT00530000063725.o	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b	ENSGT00940000161346
Eupercaria	ANCESTRAL SPECIES	3	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B	ENSGT00530000063725.o	ENSGT00950000182933.B.b	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b	ENSGT00940000161346
Tetraodontidae	ANCESTRAL SPECIES																	ENSGT00950000182973.b.b.c ##22
Tetraodon	MODERN SPECIES	26	galnt14 (ENSTNIG00000006654)	ENSTNIG00000006738	paqr3a (ENSTNIG00000006737)	mrps16 (ENSTNIG00000006736)	errfi1a (ENSTNIG00000006735)	ENSTNIG00000006734	exoc4 (ENSTNIG00000006701)	ENSTNIG00000006683	ENSTNIG00000006678	dcaf5 (ENSTNIG00000006677)	actn1 (ENSTNIG00000006676)	naga (ENSTNIG00000006675) #35	RECK (ENSTNIG00000006674)	ENSTNIG00000006673	ENSTNIG00000006651	ENSTNIG00000001344 ##22	zfp36l1a (ENSTNIG00000002277)	kcnk1b (ENSTNIG00000006618)	ENSTNIG00000006617	sncga (ENSTNIG00000006616)	ENSTNIG00000006615	ENSTNIG00000006614	ENSTNIG00000006613	tsg101a (ENSTNIG00000006609)	ENSTNIG00000006608	ACADSB (ENSTNIG00000006575)	PSTK (ENSTNIG00000006574)	drd4a (ENSTNIG00000006556)	ENSTNIG00000006555	rapsn (ENSTNIG00000001727)	ENSTNIG00000006554
Eupecaria_A	ANCESTRAL SPECIES	5	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B	ENSGT00530000063725.o	ENSGT00950000182933.B.b	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b	ENSGT00940000161346
Ballan wrasse	MODERN SPECIES	243	rusf1 (ENSLBEG00000004205)	ENSLBEG00000004185	elob (ENSLBEG00000004168)	ENSLBEG00000004158	ENSLBEG00000004141	ENSLBEG00000004066	ENSLBEG00000004029	prf1.9 (ENSLBEG00000004002)	ENSLBEG00000003971	paqr4a (ENSLBEG00000003962)	coro1a (ENSLBEG00000003881)	cldni (ENSLBEG00000003835)	ppp1caa (ENSLBEG00000003799)	kmt5c (ENSLBEG00000003730)	ENSLBEG00000003663	ENSLBEG00000003519 ##22	SYT3 (ENSLBEG00000003433)	med25 (ENSLBEG00000003159)	LRRC4B (ENSLBEG00000003091)	mybpc2a (ENSLBEG00000002971)
Eupecaria_B	ANCESTRAL SPECIES		ENSGT00520000055626.b	ENSGT00630000091000	ENSGT00390000000050	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b	ENSGT00940000161346
Eupecaria_C	ANCESTRAL SPECIES	25	ENSGT00390000012483	ENSGT00520000055626.b	ENSGT00390000000050	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b	ENSGT00940000161346
Gilthead seabream	MODERN SPECIES	15	ENSSAUG00010024469	rusf1 (ENSSAUG00010024418)	zgc:163143 (ENSSAUG00010024415)	elob (ENSSAUG00010024413)	ENSSAUG00010024410	ENSSAUG00010024408	COX6a2 (ENSSAUG00010024406)	prf1.9 (ENSSAUG00010024403)	paqr4a (ENSSAUG00010024398)	coro1a (ENSSAUG00010024334)	cldni (ENSSAUG00010024328)	ppp1caa (ENSSAUG00010024279)	ENSSAUG00010024275	SHANK1 (ENSSAUG00010024272)	ENSSAUG00010024268	ENSSAUG00010024260 ##22	SYT3 (ENSSAUG00010024259)	med25 (ENSSAUG00010024257)	LRRC4B (ENSSAUG00010024255)	mybpc2a (ENSSAUG00010021317)	emc10 (ENSSAUG00010021271)	zgc:195001 (ENSSAUG00010021269)	ENSSAUG00010021268	tbc1d17 (ENSSAUG00010020757)	ccndx (ENSSAUG00010020750)	nucb1 (ENSSAUG00010020664)	PPFIA3 (ENSSAUG00010019525)	ENSSAUG00010019515	ENSSAUG00010019514	ENSSAUG00010019507	ENSSAUG00010019501
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	23	ENSGT00390000012483	ENSGT00520000055626.b	ENSGT00390000000050	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b	ENSGT00940000161346
European seabass	MODERN SPECIES	21	pheta2 (ENSDLAG00005027433)	ENSDLAG00005010525	rusf1 (ENSDLAG00005010498)	ENSDLAG00005010486	ENSDLAG00005028108	ENSDLAG00005010434	ENSDLAG00005010421	ENSDLAG00005010346	ENSDLAG00005028566	paqr4a (ENSDLAG00005031428)	coro1a (ENSDLAG00005010065)	cldni (ENSDLAG00005026355)	ppp1caa (ENSDLAG00005009800)	ENSDLAG00005009770	ENSDLAG00005009730	ENSDLAG00005009700 ##22	SYT3 (ENSDLAG00005009680)	med25 (ENSDLAG00005009630)	LRRC4B (ENSDLAG00005029382)	mybpc2a (ENSDLAG00005001819)	emc10 (ENSDLAG00005001431)	zgc:195001 (ENSDLAG00005033467)	ENSDLAG00005001391	tbc1d17 (ENSDLAG00005022330)	ccndx (ENSDLAG00005022290)	nucb1 (ENSDLAG00005022210)	ENSDLAG00005022132	ENSDLAG00005027979	ENSDLAG00005022009	ENSDLAG00005021987	bcat2 (ENSDLAG00005021883)
Large yellow croaker	MODERN SPECIES	483	ENSLCRG00005015594	eif3d (ENSLCRG00005015590)	ENSLCRG00005015588	ENSLCRG00005015586	ENSLCRG00005015585	ENSLCRG00005015583	ENSLCRG00005015582	ENSLCRG00005015581	prf1.9 (ENSLCRG00005015580)	paqr4a (ENSLCRG00005015577)	coro1a (ENSLCRG00005015515)	cldni (ENSLCRG00005015505)	ppp1caa (ENSLCRG00005015285)	ENSLCRG00005015280	SHANK1 (ENSLCRG00005015276)	ENSLCRG00005015267 ##22	SYT3 (ENSLCRG00005015262)	med25 (ENSLCRG00005015261)	LRRC4B (ENSLCRG00005015260)	mybpc2a (ENSLCRG00005014857)	emc10 (ENSLCRG00005014853)	zgc:195001 (ENSLCRG00005014851)	ENSLCRG00005014849	tbc1d17 (ENSLCRG00005014035)	ccndx (ENSLCRG00005014027)	nucb1 (ENSLCRG00005013701)	PPFIA3 (ENSLCRG00005010052)	ENSLCRG00005010036	ENSLCRG00005010034	ENSLCRG00005010033	hsd17b14 (ENSLCRG00005010010)
Perciformes	ANCESTRAL SPECIES	1	ENSGT00520000055626.b	ENSGT00630000091000	ENSGT00390000000050	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT01050000244900.a.b.f.a.m	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b	ENSGT00940000161346
Perciformes_a	ANCESTRAL SPECIES	1	ENSGT00390000012483	ENSGT00520000055626.b	ENSGT00390000000050	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT01050000244900.a.b.f.a.m	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b	ENSGT00940000161346
Pike perch	MODERN SPECIES	35	ENSSLUG00000019558	rusf1 (ENSSLUG00000019554)	elob (ENSSLUG00000019550)	ENSSLUG00000019548	ENSSLUG00000019547	ENSSLUG00000019546	ENSSLUG00000019545	ENSSLUG00000019543	paqr4a (ENSSLUG00000019542)	coro1a (ENSSLUG00000019392)	cldni (ENSSLUG00000019374)	ppp1caa (ENSSLUG00000019003)	kmt5c (ENSSLUG00000018976)	ENSSLUG00000018966	ENSSLUG00000018959	ENSSLUG00000018938 ##22	SYT3 (ENSSLUG00000018927)	med25 (ENSSLUG00000018887)	LRRC4B (ENSSLUG00000018863)	mybpc2a (ENSSLUG00000011309)	emc10 (ENSSLUG00000011049)	zgc:195001 (ENSSLUG00000011041)	ENSSLUG00000011038	tbc1d17 (ENSSLUG00000010212)	ccndx (ENSSLUG00000010168)	nucb1 (ENSSLUG00000010138)	PPFIA3 (ENSSLUG00000009673)	NTF4 (ENSSLUG00000009613)	ENSSLUG00000009607	ENSSLUG00000009605	hsd17b14 (ENSSLUG00000009594)
Channel bull blenny	MODERN SPECIES	22	pheta2 (ENSCGOG00000005271)	cd2bp2 (ENSCGOG00000005275)	ENSCGOG00000005283	rusf1 (ENSCGOG00000005291)	ENSCGOG00000005341	elob (ENSCGOG00000005350)	ENSCGOG00000005356	ENSCGOG00000005357	ENSCGOG00000005364	prf1.9 (ENSCGOG00000005374)	paqr4a (ENSCGOG00000005385)	coro1a (ENSCGOG00000005437)	cldni (ENSCGOG00000006906)	ppp1caa (ENSCGOG00000006915)	kmt5c (ENSCGOG00000006952)	ENSCGOG00000006958 ##22	SYT3 (ENSCGOG00000006966)	med25 (ENSCGOG00000006970)	LRRC4B (ENSCGOG00000007216)	mybpc2a (ENSCGOG00000007264)	emc10 (ENSCGOG00000008982)	zgc:195001 (ENSCGOG00000008999)	ENSCGOG00000009002	tbc1d17 (ENSCGOG00000009046)	ccndx (ENSCGOG00000010868)	nucb1 (ENSCGOG00000010875)	ENSCGOG00000010888	tbc1d17 (ENSCGOG00000010891)	ccndx (ENSCGOG00000010917)	ENSCGOG00000010922	ENSCGOG00000010925
Cottioidei	ANCESTRAL SPECIES	1	ENSGT00520000055626.b	ENSGT00630000091000	ENSGT00390000000050	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000174324	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00950000182803.A.a.b.k.b	ENSGT00940000163566.a.b.a.b	ENSGT00940000153470.a.b.b.m.b	ENSGT00940000155386.b	ENSGT01060000248591.a.a.b.a.a	ENSGT01070000253837.d	ENSGT00940000159603.a	ENSGT00940000161850
Stickleback	MODERN SPECIES	10	rusf1 (ENSGACG00000013608)	ENSGACG00000013602	elob (ENSGACG00000013591)	ENSGACG00000013589	ENSGACG00000013584	ENSGACG00000013583	ENSGACG00000013576	prf1.9 (ENSGACG00000013573)	paqr4a (ENSGACG00000013570)	coro1a (ENSGACG00000013555)	cldni (ENSGACG00000013553)	ppp1caa (ENSGACG00000013529)	kmt5c (ENSGACG00000013526)	SHANK1 (ENSGACG00000013515)	ENSGACG00000013514	ENSGACG00000013508 ##22	SYT3 (ENSGACG00000013506)	med25 (ENSGACG00000013490)	LRRC4B (ENSGACG00000013488)	mybpc2a (ENSGACG00000013472)	emc10 (ENSGACG00000013462)	zgc:195001 (ENSGACG00000013455)	ENSGACG00000013450	PRPSAP1 (ENSGACG00000013434)	rasd4 (ENSGACG00000013429)	MGAT5B (ENSGACG00000013420)	sec14l1 (ENSGACG00000013359)	nptx1l (ENSGACG00000013357)	pecam1a (ENSGACG00000013350)	ENSGACG00000013346	mcrip1 (ENSGACG00000013336)
Lumpfish	MODERN SPECIES	23	ENSCLMG00005022035	rusf1 (ENSCLMG00005022036)	ENSCLMG00005022037	elob (ENSCLMG00005022038)	ENSCLMG00005022039	ENSCLMG00005022042	ENSCLMG00005022043	ENSCLMG00005022044	ENSCLMG00005022046	paqr4a (ENSCLMG00005022047)	coro1a (ENSCLMG00005022051)	cldni (ENSCLMG00005022085)	ppp1caa (ENSCLMG00005022086)	ENSCLMG00005022087	ENSCLMG00005022088	ENSCLMG00005003030 ##22	SYT3 (ENSCLMG00005003044)	med25 (ENSCLMG00005003075)	LRRC4B (ENSCLMG00005003103)	mybpc2a (ENSCLMG00005003175)	emc10 (ENSCLMG00005005612)	zgc:195001 (ENSCLMG00005005620)	ENSCLMG00005005621	PRPSAP1 (ENSCLMG00005005622)	rasd4 (ENSCLMG00005005629)	MGAT5B (ENSCLMG00005005630)	SEC14L1 (ENSCLMG00005005635)	nptx1l (ENSCLMG00005005764)	pecam1a (ENSCLMG00005005765)	PPP1R27 (ENSCLMG00005005768)	mcrip1 (ENSCLMG00005005771)
Percomorphaceae_D	ANCESTRAL SPECIES	1	ENSGT00630000091000	ENSGT00390000000050	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b	ENSGT00940000161346
Anabantaria	ANCESTRAL SPECIES	6	ENSGT00520000055626.b	ENSGT00390000000050	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00390000009109	ENSGT00940000154612	ENSGT00940000165280.a.b	ENSGT00940000164067.B	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b	ENSGT00940000161346
Anabantoidei	ANCESTRAL SPECIES	7	ENSGT00390000012483	ENSGT00520000055626.b	ENSGT00390000000050	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b	ENSGT00940000161346
Climbing perch	MODERN SPECIES	21	ENSATEG00000026418	elob (ENSATEG00000025962)	ENSATEG00000027360	ENSATEG00000022647	cox6a2 (ENSATEG00000025586)	ENSATEG00000022640	ENSATEG00000022636	paqr4a (ENSATEG00000022629)	coro1a (ENSATEG00000022616)	cldni (ENSATEG00000029748)	cldni (ENSATEG00000022605)	ppp1caa (ENSATEG00000022593)	ENSATEG00000027330	ENSATEG00000027256	ENSATEG00000026215	ENSATEG00000022526 ##22	SYT3 (ENSATEG00000022508)	med25 (ENSATEG00000022481)	LRRC4B (ENSATEG00000025759)	mybpc2a (ENSATEG00000022412)	emc10 (ENSATEG00000022388)	zgc:195001 (ENSATEG00000022377)	ENSATEG00000022368	tbc1d17 (ENSATEG00000022356)	ccndx (ENSATEG00000022348)	nucb1 (ENSATEG00000022335)	ENSATEG00000022284	ENSATEG00000022271	ENSATEG00000022256	ENSATEG00000022247	bcat2 (ENSATEG00000022141)
Siamese fighting fish	MODERN SPECIES	19	ENSBSLG00000004317	rusf1 (ENSBSLG00000004325)	ENSBSLG00000004342	elob (ENSBSLG00000004352)	ENSBSLG00000004354	ENSBSLG00000004782	ENSBSLG00000004901	prf1.9 (ENSBSLG00000004972)	paqr4a (ENSBSLG00000005036)	coro1a (ENSBSLG00000005106)	cldni (ENSBSLG00000005642)	ppp1caa (ENSBSLG00000005683)	ENSBSLG00000005857	ENSBSLG00000006295	ENSBSLG00000006403	ENSBSLG00000006506 ##22	SYT3 (ENSBSLG00000006642)	med25 (ENSBSLG00000006773)	LRRC4B (ENSBSLG00000007712)	mybpc2a (ENSBSLG00000007982)	emc10 (ENSBSLG00000009493)	zgc:195001 (ENSBSLG00000009517)	ENSBSLG00000009524	tbc1d17 (ENSBSLG00000009574)	ccndx (ENSBSLG00000012030)	nucb1 (ENSBSLG00000012097)	PPFIA3 (ENSBSLG00000012302)	ENSBSLG00000012638	ENSBSLG00000012641	ENSBSLG00000012645	ENSBSLG00000012649
Zig-zag eel	MODERN SPECIES	22	cd2bp2 (ENSMAMG00000021830)	ENSMAMG00000021825	rusf1 (ENSMAMG00000021817)	ENSMAMG00000021812	elob (ENSMAMG00000021786)	ENSMAMG00000021783	ENSMAMG00000028632	cox6a2 (ENSMAMG00000027676)	prf1.9 (ENSMAMG00000021771)	paqr4a (ENSMAMG00000021764)	coro1a (ENSMAMG00000021750)	cldni (ENSMAMG00000021759)	ppp1caa (ENSMAMG00000026415)	ENSMAMG00000021739	ENSMAMG00000027813	ENSMAMG00000021723 ##22	ENSMAMG00000021715	med25 (ENSMAMG00000021488)	ENSMAMG00000021480	mybpc2a (ENSMAMG00000021466)	emc10 (ENSMAMG00000021460)	zgc:195001 (ENSMAMG00000025461)	ENSMAMG00000027214	tbc1d17 (ENSMAMG00000021449)	ccndx (ENSMAMG00000021444)	nucb1 (ENSMAMG00000021439)	ENSMAMG00000021428	ENSMAMG00000021423	ENSMAMG00000021420	ENSMAMG00000027804	bcat2 (ENSMAMG00000021377)
Carangaria	ANCESTRAL SPECIES	4	ENSGT00630000091000	ENSGT00390000000050	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b	ENSGT00940000161346
Pleuronectoidei	ANCESTRAL SPECIES	2	ENSGT00630000091000	ENSGT00390000000050	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b	ENSGT00940000161346
Tongue sole	MODERN SPECIES	8	ENSCSEG00000012555	CACNG1 (ENSCSEG00000012540)	cacng4b (ENSCSEG00000012533)	aimp2 (ENSCSEG00000012526)	ENSCSEG00000012520	pvalb8 (ENSCSEG00000012517)	pvalb4 (ENSCSEG00000012513)	pvalb5 (ENSCSEG00000012510)	pvalb1 (ENSCSEG00000012506)	lmtk2 (ENSCSEG00000012498)	TECPR1 (ENSCSEG00000012453)	bri3 (ENSCSEG00000012438)	zgc:103625 (ENSCSEG00000012429)	ENSCSEG00000012427	ENSCSEG00000012397	ENSCSEG00000012373 ##22	SYT3 (ENSCSEG00000012346)	med25 (ENSCSEG00000012322)	LRRC4B (ENSCSEG00000012320)	mybpc2a (ENSCSEG00000012261)	emc10 (ENSCSEG00000012237)	zgc:195001 (ENSCSEG00000012224)	pbx4 (ENSCSEG00000012184)	lpar2a (ENSCSEG00000012168)	brd4 (ENSCSEG00000012124)	pet100 (ENSCSEG00000012109)	stxbp2 (ENSCSEG00000012076)	ENSCSEG00000012060	ENSCSEG00000012028	ENSCSEG00000012023	ENSCSEG00000012002
Turbot	MODERN SPECIES	10	ENSSMAG00000008687	rusf1 (ENSSMAG00000008671)	ENSSMAG00000008661	elob (ENSSMAG00000008646)	ENSSMAG00000022856	ENSSMAG00000008590	ENSSMAG00000032516	prf1.9 (ENSSMAG00000037065)	paqr4a (ENSSMAG00000008573)	coro1a (ENSSMAG00000008562)	cldni (ENSSMAG00000008543)	ppp1caa (ENSSMAG00000008506)	ENSSMAG00000008487	ENSSMAG00000025569	ENSSMAG00000038089	ENSSMAG00000008389 ##22	SYT3 (ENSSMAG00000008332)	med25 (ENSSMAG00000008300)	LRRC4B (ENSSMAG00000008282)	mybpc2a (ENSSMAG00000008209)	zgc:195001 (ENSSMAG00000008151)	AKT1S1 (ENSSMAG00000008139)	tbc1d17 (ENSSMAG00000008115)	ccndx (ENSSMAG00000008098)	ENSSMAG00000007952	ENSSMAG00000023956	nucb1 (ENSSMAG00000008081)	ENSSMAG00000007904	ENSSMAG00000007883	ENSSMAG00000007835	ifi35 (ENSSMAG00000007822)
Carangaria_A	ANCESTRAL SPECIES	28	ENSGT00520000055626.b	ENSGT00390000000050	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b	ENSGT00940000161346
Barramundi perch	MODERN SPECIES	152	pheta2 (ENSLCAG00010005576)	cd2bp2 (ENSLCAG00010005574)	rusf1 (ENSLCAG00010005569)	elob (ENSLCAG00010005565)	ENSLCAG00010005564	ENSLCAG00010005562	ENSLCAG00010005558	prf1.9 (ENSLCAG00010005553)	paqr4a (ENSLCAG00010005551)	cldni (ENSLCAG00010005548)	coro1a (ENSLCAG00010005540)	cldni (ENSLCAG00010005535)	ppp1caa (ENSLCAG00010005260)	ENSLCAG00010005175	ENSLCAG00010005170	ENSLCAG00010005160 ##22	SYT3 (ENSLCAG00010005157)	med25 (ENSLCAG00010005152)	LRRC4B (ENSLCAG00010005147)	mybpc2a (ENSLCAG00010005044)	emc10 (ENSLCAG00010005010)	zgc:195001 (ENSLCAG00010005008)	ENSLCAG00010005001	tbc1d17 (ENSLCAG00010004987)	ccndx (ENSLCAG00010004978)	nucb1 (ENSLCAG00010004948)	PPFIA3 (ENSLCAG00010004826)	NTF4 (ENSLCAG00010004810)	ENSLCAG00010004805	ENSLCAG00010004802	hsd17b14 (ENSLCAG00010004792)
Seriola	ANCESTRAL SPECIES	15	ENSGT00390000000050	ENSGT00940000166194	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a.p	ENSGT00730000114636	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B	ENSGT00530000063725.o.y	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b	ENSGT00940000161346
Greater amberjack	MODERN SPECIES	17	rusf1 (ENSSDUG00000022094)	ENSSDUG00000022088	elob (ENSSDUG00000022076)	ENSSDUG00000022069	ENSSDUG00000022068	ENSSDUG00000022042	ENSSDUG00000022065	prf1.9 (ENSSDUG00000022028)	ENSSDUG00000022022	paqr4a (ENSSDUG00000022020)	coro1a (ENSSDUG00000022002)	cldni (ENSSDUG00000021999)	ppp1caa (ENSSDUG00000021983)	ENSSDUG00000021978	ENSSDUG00000021963	ENSSDUG00000021940 ##22	SYT3 (ENSSDUG00000021918)	med25 (ENSSDUG00000021908)	LRRC4B (ENSSDUG00000021904)	mybpc2a (ENSSDUG00000021876)	emc10 (ENSSDUG00000021857)	zgc:195001 (ENSSDUG00000021852)	ENSSDUG00000021848	tbc1d17 (ENSSDUG00000021839)	ccndx (ENSSDUG00000021833)	nucb1 (ENSSDUG00000021816)	PPFIA3 (ENSSDUG00000021774)	ENSSDUG00000021763	ENSSDUG00000021748	ENSSDUG00000021740	hsd17b14 (ENSSDUG00000021735)
Yellowtail amberjack	MODERN SPECIES	2918	ENSSLDG00000018136	rusf1 (ENSSLDG00000017938)	ENSSLDG00000017897	elob (ENSSLDG00000017873)	ENSSLDG00000017859	ENSSLDG00000017852	ENSSLDG00000017834	ENSSLDG00000017782	prf1.9 (ENSSLDG00000017746)	paqr4a (ENSSLDG00000017736)	coro1a (ENSSLDG00000017691)	cldni (ENSSLDG00000017666)	ppp1caa (ENSSLDG00000017624)	ENSSLDG00000017595	ENSSLDG00000017550	ENSSLDG00000017459 ##22	SYT3 (ENSSLDG00000017366)	ENSSLDG00000017319	ENSSLDG00000017293	LRRC4B (ENSSLDG00000017266)	mybpc2a (ENSSLDG00000017199)	emc10 (ENSSLDG00000017155)	zgc:195001 (ENSSLDG00000017128)	ENSSLDG00000017117	tbc1d17 (ENSSLDG00000017087)	ccndx (ENSSLDG00000017032)	nucb1 (ENSSLDG00000016990)	PPFIA3 (ENSSLDG00000016928)	ENSSLDG00000016903	ENSSLDG00000016813	ENSSLDG00000016769
Tiger tail seahorse	MODERN SPECIES	391	mrps7 (ENSHCOG00000008732)	GGA3 (ENSHCOG00000008704)	NUP85 (ENSHCOG00000008679)	ENSHCOG00000008641	jpt1b (ENSHCOG00000008622)	ENSHCOG00000008606	ENSHCOG00000008597	ENSHCOG00000008579	prf1.9 (ENSHCOG00000008537)	paqr4a (ENSHCOG00000008529)	coro1a (ENSHCOG00000008520)	cldni (ENSHCOG00000008483)	ppp1caa (ENSHCOG00000008475)	kmt5c (ENSHCOG00000008446)	ENSHCOG00000008428	ENSHCOG00000008401 ##22	SYT3 (ENSHCOG00000008392)	med25 (ENSHCOG00000008359)	LRRC4B (ENSHCOG00000000270)	mybpc2a (ENSHCOG00000008271)	emc10 (ENSHCOG00000008225)	zgc:195001 (ENSHCOG00000008194)	ENSHCOG00000008180	tbc1d17 (ENSHCOG00000008176)	ccndx (ENSHCOG00000008162)	nucb1 (ENSHCOG00000008145)	PPFIA3 (ENSHCOG00000008137)	ENSHCOG00000008073	ENSHCOG00000008060	ENSHCOG00000007943	bcat2 (ENSHCOG00000007937)
Pinecone sodierfish	MODERN SPECIES	22	cd2bp2 (ENSMMDG00005005501)	ENSMMDG00005005503	rusf1 (ENSMMDG00005005505)	ENSMMDG00005005507	elob (ENSMMDG00005005510)	ENSMMDG00005005512	ENSMMDG00005005513	cox6a2 (ENSMMDG00005005516)	prf1.9 (ENSMMDG00005005519)	paqr4a (ENSMMDG00005005619)	coro1a (ENSMMDG00005005623)	cldni (ENSMMDG00005005627)	ppp1caa (ENSMMDG00005005644)	kmt5c (ENSMMDG00005006104)	SHANK1 (ENSMMDG00005006105)	ENSMMDG00005006113 ##22	SYT3 (ENSMMDG00005006142)	med25 (ENSMMDG00005006146)	LRRC4B (ENSMMDG00005006163)	mybpc2a (ENSMMDG00005006235)	emc10 (ENSMMDG00005009355)	zgc:195001 (ENSMMDG00005009360)	ENSMMDG00005009364	tbc1d17 (ENSMMDG00005009420)	ccndx (ENSMMDG00005012037)	nucb1 (ENSMMDG00005012049)	PPFIA3 (ENSMMDG00005012084)	ENSMMDG00005012091	ENSMMDG00005012092	ENSMMDG00005012096	ENSMMDG00005012100
Cod	MODERN SPECIES	11	pheta2 (ENSGMOG00000031227)	cd2bp2 (ENSGMOG00000025567)	ENSGMOG00000032134	ENSGMOG00000013659	elob (ENSGMOG00000013626)	ENSGMOG00000036619	ENSGMOG00000028589	ENSGMOG00000013594	prf1.9 (ENSGMOG00000013585)	paqr4a (ENSGMOG00000013577)	coro1a (ENSGMOG00000013567)	cldni (ENSGMOG00000020277)	ppp1caa (ENSGMOG00000013557)	ENSGMOG00000028554	ENSGMOG00000025904	ENSGMOG00000000364 ##22	ENSGMOG00000023274	ENSGMOG00000009136	ENSGMOG00000009149	ENSGMOG00000000761	ENSGMOG00000026214	ifi35 (ENSGMOG00000029998)	bcat2 (ENSGMOG00000009217)	hsd17b14 (ENSGMOG00000009233)	ENSGMOG00000009245	ENSGMOG00000030632	emc10 (ENSGMOG00000007196)	ENSGMOG00000009192	zgc:195001 (ENSGMOG00000027888)	ENSGMOG00000028640	tbc1d17 (ENSGMOG00000007255)
Protacanthopterygii	ANCESTRAL SPECIES	8	ENSGT00520000055626.b	ENSGT00390000000050	ENSGT00940000166194.b	ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B	ENSGT00940000157978.a	ENSGT00940000160628	ENSGT00920000149270	ENSGT00940000164151.a.b	ENSGT00960000187017	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b	ENSGT00940000161346
Salmoninae	ANCESTRAL SPECIES		ENSGT00390000018316.a.f	ENSGT00940000154348.c.a.a	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B	ENSGT00940000157978.a.c.b	ENSGT00920000149270.m	ENSGT00940000157978.a.c.a	ENSGT00940000160628	ENSGT00920000149270.n	ENSGT00940000164151.a.b	ENSGT00940000161700.h	ENSGT00960000187017	ENSGT00940000161700.g.a	ENSGT00940000153561.b.a.b.a.a.r	ENSGT00950000182973.b.b.c ##22	ENSGT00940000161770.g	ENSGT00940000160439.s	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520.a	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989.s	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c.j	ENSGT00940000166365	ENSGT00940000164717.b	ENSGT00940000161346.c
Huchen	DUPLICATION
Huchen	DUPLICATION
Huchen	DUPLICATION
Huchen	MODERN SPECIES	2395															ENSHHUG00000034666	ENSHHUG00000034657 ##22	ENSHHUG00000034653 ##22	SYT3 (ENSHHUG00000034639)	med25 (ENSHHUG00000034633)
Huchen	MODERN SPECIES	2395														ENSHHUG00000034666	ENSHHUG00000034657 ##22	ENSHHUG00000034653 ##22	SYT3 (ENSHHUG00000034639)	med25 (ENSHHUG00000034633)
Huchen	MODERN SPECIES	5469																ENSHHUG00000006075 ##22	ENSHHUG00000006083 ##22
Huchen	MODERN SPECIES	5469																ENSHHUG00000006083 ##22	ENSHHUG00000006075 ##22
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES	37	ENSGT00520000055626.b	ENSGT00390000000050.g	ENSGT00940000166194.b.a	ENSGT00390000018316.a.f.h	ENSGT00940000154348.c.a.a	ENSGT00390000009109	ENSGT00940000165280.a.b	ENSGT00940000164067.B	ENSGT00940000157978.a.c.b	ENSGT00940000160628.e.a	ENSGT00920000149270.n	ENSGT00940000164151.a.b	ENSGT00960000187017	ENSGT00940000161700.g.a	ENSGT00940000153561.b.a.b.a.a.r	ENSGT00950000182973.b.b.c.e ##22	ENSGT00940000161770.g	ENSGT00940000160439.s	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520.a	ENSGT01070000254563.a	ENSGT00390000004520.b	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989.s	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c.j	ENSGT00940000166365.k
Oncorhynchus	ANCESTRAL SPECIES	37	ENSGT00940000166194.b.b	ENSGT00940000166194.b.a.b	ENSGT00390000018316.a.f.h	ENSGT00940000154348.c.a.a.l	ENSGT00390000009109.i	ENSGT00940000165280.a.b.f	ENSGT00940000164067.B.q	ENSGT00940000157978.a.c.b	ENSGT00940000160628.e.b	ENSGT00940000160628.e.a.c	ENSGT00920000149270.n	ENSGT00940000164151.a.b.f	ENSGT00960000187017	ENSGT00940000161700.g.a	ENSGT00940000153561.b.a.b.a.a.r	ENSGT00950000182973.b.b.c.e ##22	ENSGT00940000161700.h	ENSGT00950000182973.b.b.c.f ##22	ENSGT00940000161770.g.c	ENSGT00940000160439.s.b	ENSGT00940000160261.g.f	ENSGT00390000004520.a.a	ENSGT01070000254563.a	ENSGT00930000151196.b.i	ENSGT00390000017397.g	ENSGT00940000158989.s	ENSGT00940000167404.o.a	ENSGT00390000001927.b.j	ENSGT01050000244900.a.b.f.a.z	ENSGT00390000007725.B.c.j.a	ENSGT00940000166365.k
Rainbow trout	MODERN SPECIES	4	ENSOMYG00000004138	elob (ENSOMYG00000003874)	ENSOMYG00000003849	ENSOMYG00000003813	ENSOMYG00000003801	ENSOMYG00000003775	paqr4a (ENSOMYG00000003748)	coro1a (ENSOMYG00000003718)	cldni (ENSOMYG00000065235)	ppp1caa (ENSOMYG00000003579)	ENSOMYG00000076273	ENSOMYG00000003347	ENSOMYG00000056053	ENSOMYG00000017908	ENSOMYG00000059599	ENSOMYG00000017871 ##22	ENSOMYG00000068355	SYT3 (ENSOMYG00000017854)	med25 (ENSOMYG00000017767)	LRRC4B (ENSOMYG00000017744)	mybpc2a (ENSOMYG00000014986)	emc10 (ENSOMYG00000014692)	ENSOMYG00000057568	zgc:195001 (ENSOMYG00000014671)	ENSOMYG00000014657	tbc1d17 (ENSOMYG00000014399)	ccndx (ENSOMYG00000014361)	nucb1 (ENSOMYG00000014020)	ENSOMYG00000013926	ENSOMYG00000054248	ENSOMYG00000013866
Oncorhynchus_a	ANCESTRAL SPECIES	80	ENSGT00390000000050.h	ENSGT00940000166194.b.b	ENSGT00940000166194.b.a.b	ENSGT00390000018316.a.f.h	ENSGT00940000154348.c.a.a.l	ENSGT00390000009109.i	ENSGT00940000165280.a.b.f	ENSGT00940000164067.B.q	ENSGT00940000157978.a.c.b	ENSGT00940000160628.e.a.c	ENSGT00920000149270.n	ENSGT00940000164151.a.b.f	ENSGT00960000187017	ENSGT00940000161700.g.a	ENSGT00940000153561.b.a.b.a.a.r	ENSGT00950000182973.b.b.c.e ##22	ENSGT00940000161770.g.c	ENSGT00940000160439.s.b	ENSGT00940000160261.g.e.a	ENSGT00940000160261.g.e.b	ENSGT00940000160092.B	ENSGT00390000004520.a.a	ENSGT00930000151196.b.i	ENSGT00390000017397.g	ENSGT00940000158989.s	ENSGT00940000167404.o.a	ENSGT00390000001927.b.j	ENSGT01050000244900.a.b.f.a.z	ENSGT00390000007725.B.c.j.a	ENSGT00940000166365.k	ENSGT00940000164717.b.e.b
Coho salmon	MODERN SPECIES	26	rusf1 (ENSOKIG00005030884)	ENSOKIG00005030809	ENSOKIG00005030792	elob (ENSOKIG00005030768)	ENSOKIG00005030758	ENSOKIG00005030749	ENSOKIG00005030737	ENSOKIG00005030723	paqr4a (ENSOKIG00005030719)	coro1a (ENSOKIG00005030578)	cldni (ENSOKIG00005030550)	ppp1caa (ENSOKIG00005030070)	ENSOKIG00005030028	ENSOKIG00005030013	ENSOKIG00005029999	ENSOKIG00005029945 ##22	SYT3 (ENSOKIG00005029913)	med25 (ENSOKIG00005029819)	LRRC4B (ENSOKIG00005029798)	mybpc2a (ENSOKIG00005028594)	emc10 (ENSOKIG00005028479)	zgc:195001 (ENSOKIG00005028462)	ENSOKIG00005028449	tbc1d17 (ENSOKIG00005027998)	ccndx (ENSOKIG00005027964)	nucb1 (ENSOKIG00005027497)	PPFIA3 (ENSOKIG00005007023)	ENSOKIG00005006942	ENSOKIG00005006709	ENSOKIG00005006686	hsd17b14 (ENSOKIG00005006526)
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	71	ENSGT00940000166194.b.a.c	ENSGT00390000018316.a.f.g	ENSGT00390000018316.a.f.h	ENSGT00730000114636	ENSGT00390000009109.h	ENSGT00940000165280.a.b	ENSGT00940000164067.B	ENSGT00940000157978.a.c.b	ENSGT00940000160628.e.a	ENSGT00920000149270.n	ENSGT00940000164151.a.b	ENSGT00940000161700.g.a.b	ENSGT00960000187017	ENSGT00940000161700.g.a.a	ENSGT00940000153561.b.a.b.a.a.r	ENSGT00950000182973.b.b.c.e.a ##22	ENSGT00940000161770.g	ENSGT00940000160439.s.c	ENSGT00740000117131	ENSGT00940000160261.g.c	ENSGT00390000004520.b.b	ENSGT01070000254563.a	ENSGT00930000151196.b	ENSGT00390000017397.e	ENSGT00940000158989.s.a	ENSGT00940000167404.m	ENSGT00390000001927.b	ENSGT01050000244900.a.b.f.a	ENSGT00390000007725.B.c.j	ENSGT00940000166365.k	ENSGT00940000164717.b.c
River trout	MODERN SPECIES		ENSSTUG00000030370	ENSSTUG00000030344	elob (ENSSTUG00000030328)	ENSSTUG00000030323	ENSSTUG00000030311	ENSSTUG00000030296	ENSSTUG00000030270	paqr4a (ENSSTUG00000030264)	coro1a (ENSSTUG00000030200)	cldni (ENSSTUG00000030182)	ppp1caa (ENSSTUG00000029856)	ENSSTUG00000029833	ENSSTUG00000029816	ENSSTUG00000029804	ENSSTUG00000029790	ENSSTUG00000029726 ##22	SYT3 (ENSSTUG00000029716)	med25 (ENSSTUG00000029655)	LRRC4B (ENSSTUG00000029645)	mybpc2a (ENSSTUG00000020778)	emc10 (ENSSTUG00000020514)	zgc:195001 (ENSSTUG00000020509)	ENSSTUG00000020502	tbc1d17 (ENSSTUG00000020213)	ccndx (ENSSTUG00000020171)	nucb1 (ENSSTUG00000019612)	PPFIA3 (ENSSTUG00000018777)	ENSSTUG00000018750	ENSSTUG00000018716	ENSSTUG00000018709	hsd17b14 (ENSSTUG00000018615)
Atlantic salmon	MODERN SPECIES	22	pheta2 (ENSSSAG00000108724)	ENSSSAG00000000371	rusf1 (ENSSSAG00000116703)	ENSSSAG00000112480	elob (ENSSSAG00000104437)	ENSSSAG00000095309	ENSSSAG00000042948	ENSSSAG00000107160	ENSSSAG00000106483	paqr4a (ENSSSAG00000097417)	coro1a (ENSSSAG00000042362)	cldni (ENSSSAG00000096220)	ppp1caa (ENSSSAG00000082947)	ENSSSAG00000002787	ENSSSAG00000000782	ENSSSAG00000010510 ##22	SYT3 (ENSSSAG00000000798)	med25 (ENSSSAG00000000822)	ENSSSAG00000089429	ENSSSAG00000116636	LRRC4B (ENSSSAG00000114501)	mybpc2a (ENSSSAG00000106662)	emc10 (ENSSSAG00000000852)	ENSSSAG00000088604	zgc:195001 (ENSSSAG00000098052)	ENSSSAG00000103240	tbc1d17 (ENSSSAG00000001956)	ccndx (ENSSSAG00000002145)	nucb1 (ENSSSAG00000002129)	ENSSSAG00000052658	ENSSSAG00000002746
Salmo	ANCESTRAL SPECIES																	ENSGT00950000182973.b.b.c.e.b ##22
River trout	MODERN SPECIES	530																ENSSTUG00000046487 ##22
Atlantic salmon	MODERN SPECIES	25	ENSSSAG00000110384	rusf1 (ENSSSAG00000043067)	ENSSSAG00000086025	ENSSSAG00000043009	ENSSSAG00000002797	elob (ENSSSAG00000002817)	ENSSSAG00000042966	ENSSSAG00000108621	ENSSSAG00000041369	ENSSSAG00000042647	paqr4a (ENSSSAG00000092249)	coro1a (ENSSSAG00000085482)	cldni (ENSSSAG00000096428)	ppp1caa (ENSSSAG00000090101)	ENSSSAG00000002762	ENSSSAG00000002733 ##22	ENSSSAG00000119791	med25 (ENSSSAG00000002644)	ENSSSAG00000043694	mybpc2a (ENSSSAG00000093426)	ENSSSAG00000113291	emc10 (ENSSSAG00000044521)	tbc1d17 (ENSSSAG00000041398)	akts1 (ENSSSAG00000042302)	ccndx (ENSSSAG00000043501)	NUCB1 (ENSSSAG00000044642)	ENSSSAG00000001490	ENSSSAG00000001402	ENSSSAG00000116419	ENSSSAG00000060183	ENSSSAG00000015562
Salmoninae_a	ANCESTRAL SPECIES	800															ENSGT00940000161700.h	ENSGT00950000182973.b.b.c.f ##22
Oncorhynchus	ANCESTRAL SPECIES	37	ENSGT00390000018316.a.f.h	ENSGT00940000154348.c.a.a.l	ENSGT00390000009109.i	ENSGT00940000165280.a.b.f	ENSGT00940000164067.B.q	ENSGT00940000157978.a.c.b	ENSGT00940000160628.e.b	ENSGT00940000160628.e.a.c	ENSGT00920000149270.n	ENSGT00940000164151.a.b.f	ENSGT00960000187017	ENSGT00940000161700.g.a	ENSGT00940000153561.b.a.b.a.a.r	ENSGT00950000182973.b.b.c.e ##22	ENSGT00940000161700.h	ENSGT00950000182973.b.b.c.f ##22	ENSGT00940000161770.g.c	ENSGT00940000160439.s.b	ENSGT00940000160261.g.f	ENSGT00390000004520.a.a	ENSGT01070000254563.a	ENSGT00930000151196.b.i	ENSGT00390000017397.g	ENSGT00940000158989.s	ENSGT00940000167404.o.a	ENSGT00390000001927.b.j	ENSGT01050000244900.a.b.f.a.z	ENSGT00390000007725.B.c.j.a	ENSGT00940000166365.k	ENSGT00940000164717.b.e.b	ENSGT00390000007725.B.c.i
Rainbow trout	MODERN SPECIES	3	ENSOMYG00000003902	elob (ENSOMYG00000004116)	ENSOMYG00000004090	ENSOMYG00000004068	ENSOMYG00000004044	prf1 (ENSOMYG00000003986)	paqr4a (ENSOMYG00000052552)	coro1a (ENSOMYG00000003821)	cldni (ENSOMYG00000003709)	ENSOMYG00000065149	ppp1caa (ENSOMYG00000003434)	ENSOMYG00000060809	ENSOMYG00000003201	ENSOMYG00000067590	ENSOMYG00000052068	ENSOMYG00000071721 ##22	SYT3 (ENSOMYG00000016853)	med25 (ENSOMYG00000016785)	LRRC4B (ENSOMYG00000016768)	ENSOMYG00000068349	mybpc2a (ENSOMYG00000016359)	ENSOMYG00000073396	emc10 (ENSOMYG00000016305)	ENSOMYG00000053029	zgc:195001 (ENSOMYG00000016301)	ENSOMYG00000016292	tbc1d17 (ENSOMYG00000014184)	ccndx (ENSOMYG00000013981)	nucb1 (ENSOMYG00000012646)	ENSOMYG00000070728	ENSOMYG00000012372
Oncorhynchus_a	ANCESTRAL SPECIES	62	ENSGT00390000000050.g	ENSGT00970000197051	ENSGT00940000166194.b.a.a	ENSGT00390000018316.a.f.g	ENSGT00940000154348.c.a.a.k	ENSGT00390000009109.j	ENSGT00940000165280.a.b.e	ENSGT00940000164067.B.r	ENSGT00940000157978.a.c.a	ENSGT00940000160628.e.a.d	ENSGT00920000149270.m	ENSGT00940000164151.a.b.e	ENSGT01000000221085	ENSGT00940000161700.g.b	ENSGT00940000161700.h	ENSGT00950000182973.b.b.c.f ##22	ENSGT00940000160439.s.a	ENSGT00390000004520.a.b	ENSGT00930000151196.b.j	ENSGT00390000017397.h	ENSGT00940000158989.t	ENSGT00940000167404.p	ENSGT00940000167404.o.b	ENSGT00390000001927.b.i	ENSGT01050000244900.a.b.f.a.y.a.a	ENSGT00390000007725.B.c.j.b	ENSGT00940000164717.b.e.a	ENSGT00940000161346.c	ENSGT00390000009532.A.d.b.c	ENSGT00530000063686.b.e.a	ENSGT00390000010721.b.l.b.b
Coho salmon	MODERN SPECIES	1	ENSOKIG00005008102	elob (ENSOKIG00005008086)	ENSOKIG00005008068	ENSOKIG00005008056	ENSOKIG00005008048	ENSOKIG00005008027	paqr4a (ENSOKIG00005008018)	coro1a (ENSOKIG00005007964)	cldni (ENSOKIG00005007937)	ppp1caa (ENSOKIG00005007324)	ENSOKIG00005007275	ENSOKIG00005007256	ENSOKIG00005007242	ENSOKIG00005007234	ENSOKIG00005007221	ENSOKIG00005007184 ##22	SYT3 (ENSOKIG00005007149)	med25 (ENSOKIG00005007095)	LRRC4B (ENSOKIG00005007079)	mybpc2a (ENSOKIG00005006805)	emc10 (ENSOKIG00005006763)	zgc:195001 (ENSOKIG00005006752)	ENSOKIG00005006735	tbc1d17 (ENSOKIG00005004523)	ccndx (ENSOKIG00005004118)	nucb1 (ENSOKIG00005004020)	PPFIA3 (ENSOKIG00005003713)	ENSOKIG00005003669	ENSOKIG00005003666	ENSOKIG00005003664	hsd17b14 (ENSOKIG00005003651)
Chinook salmon	MODERN SPECIES	33	cd2bp2 (ENSOTSG00005035017)	rusf1 (ENSOTSG00005035019)	ENSOTSG00005035020	zgc:163143 (ENSOTSG00005035021)	elob (ENSOTSG00005035022)	ENSOTSG00005035023	ENSOTSG00005035024	ENSOTSG00005035026	ENSOTSG00005000858	paqr4a (ENSOTSG00005001080)	coro1a (ENSOTSG00005001223)	cldni (ENSOTSG00005001235)	ppp1caa (ENSOTSG00005001250)	ENSOTSG00005001558	kmt5c (ENSOTSG00005001559)	ENSOTSG00005001564 ##22	SYT3 (ENSOTSG00005001567)	med25 (ENSOTSG00005001569)	mybpc2a (ENSOTSG00005001580)	ENSOTSG00005001583	emc10 (ENSOTSG00005001584)	zgc:195001 (ENSOTSG00005001586)	AKT1S1 (ENSOTSG00005001588)	tbc1d17 (ENSOTSG00005001615)	ccndx (ENSOTSG00005006944)	nucb1 (ENSOTSG00005006946)	nucb1 (ENSOTSG00005006950)	limd2 (ENSOTSG00005007039)	ddx42 (ENSOTSG00005007040)	strada (ENSOTSG00005007051)	rnf113a (ENSOTSG00005007424)
Northern pike	MODERN SPECIES	10	ENSELUG00000020013	elob (ENSELUG00000019963)	ENSELUG00000019956	ENSELUG00000019936	ENSELUG00000019919	prf1.1 (ENSELUG00000019917)	paqr4a (ENSELUG00000019910)	coro1a (ENSELUG00000019899)	cldni (ENSELUG00000019878)	ppp1caa (ENSELUG00000019861)	ENSELUG00000019821	ENSELUG00000019807	ENSELUG00000019773	ENSELUG00000030602	ENSELUG00000025056	ENSELUG00000019710 ##22	SYT3 (ENSELUG00000019674)	med25 (ENSELUG00000019639)	LRRC4B (ENSELUG00000019583)	mybpc2a (ENSELUG00000019562)	emc10 (ENSELUG00000019500)	zgc:195001 (ENSELUG00000019479)	ENSELUG00000019475	tbc1d17 (ENSELUG00000000845)	ccndx (ENSELUG00000001143)	nucb1 (ENSELUG00000019424)	PPFIA3 (ENSELUG00000019399)	ENSELUG00000019283	ENSELUG00000019270	ENSELUG00000019220	hsd17b14 (ENSELUG00000032495)
Osteoglossocephalai	ANCESTRAL SPECIES	83				ENSGT00940000158125.b	ENSGT00940000163157.b	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a	ENSGT00950000182973.b.b.c ##22	ENSGT00950000182973.b.b.d ##22	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404	ENSGT00390000001927.b	ENSGT00940000161121	ENSGT01050000244900.a.b	ENSGT00390000007725.B.c	ENSGT00940000166365	ENSGT00940000164717.b	ENSGT00940000161346
Clupeocephala	ANCESTRAL SPECIES	358				ENSGT01030000234586.A.a.a.a	ENSGT00940000154959	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT01020000230627	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22
Otomorpha	ANCESTRAL SPECIES	558											ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.a.e	ENSGT00990000206277	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22
Clupeiformes	ANCESTRAL SPECIES	297	ENSGT01030000234629.E.a.a	ENSGT00950000183193.A.c.b	ENSGT00550000074873.nb.a	ENSGT00410000025739.c.a	ENSGT00940000153882.a.b.b.a	ENSGT00390000006009.a.a.b.b	ENSGT00940000163071	ENSGT00940000163984.B	ENSGT00940000153820.b.b.c	ENSGT00940000158312.e	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.a.e	ENSGT00990000206277	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22
Atlantic herring	MODERN SPECIES	15	TBC1D24 (ENSCHAG00000007165)	ntn2 (ENSCHAG00000007141)	nog2 (ENSCHAG00000007131)	ENSCHAG00000007120	ENSCHAG00000007092	ENSCHAG00000007061	ENSCHAG00000007054	MSS51 (ENSCHAG00000007038)	MSS51 (ENSCHAG00000007027)	CAPN15 (ENSCHAG00000006926)	ENSCHAG00000006848	slc6a16b (ENSCHAG00000006523)	SLC17A7 (ENSCHAG00000003122)	ENSCHAG00000002934	ENSCHAG00000002804	zgc:91999 (ENSCHAG00000002620) ##22	hexdc (ENSCHAG00000018841)	kctd2 (ENSCHAG00000018804)	SLC16A5 (ENSCHAG00000018798)	ENSCHAG00000018576	birc5a (ENSCHAG00000018559)	TMEM235 (ENSCHAG00000018553)	tha1 (ENSCHAG00000018542)	socs3b (ENSCHAG00000018531)	PGS1 (ENSCHAG00000018512)	ENSCHAG00000018507	ENSCHAG00000018498	ENSCHAG00000018475	ENSCHAG00000018444	ENSCHAG00000018379	cyth1b (ENSCHAG00000016764)
Denticle herring	MODERN SPECIES	255					ENSDCDG00000016312	ENSDCDG00000016308	ENSDCDG00000016297	ENSDCDG00000016281	ENSDCDG00000016273	zgc:92313 (ENSDCDG00000016265)	mapk7 (ENSDCDG00000015686)	wdr45b (ENSDCDG00000015622)	ENSDCDG00000015526	ENSDCDG00000015520	ENSDCDG00000015516	zgc:91999 (ENSDCDG00000015504) ##22	tbp (ENSDCDG00000015491)	pcdh15a (ENSDCDG00000009997)	nkx1.2la (ENSDCDG00000009864)	eef1akmt2 (ENSDCDG00000009859)	abraxas2 (ENSDCDG00000009835)	PDZD8 (ENSDCDG00000009818)	slc18a2 (ENSDCDG00000009261)	ENSDCDG00000009208	ENSDCDG00000009195
Otophysi	ANCESTRAL SPECIES	112	ENSGT01030000234629.E.a.a	ENSGT00950000183193.A.c.b	ENSGT00550000074873.nb.a	ENSGT00410000025739.c.a	ENSGT00950000182933.B.a.a	ENSGT00940000153820.b.b.c	ENSGT00940000158312.e	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b.b	ENSGT00940000153882.a.b.b.a	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.a.e	ENSGT00990000206277	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000160261.h	ENSGT00940000160092.A	ENSGT00930000151196.a.a	ENSGT00940000161121	ENSGT01050000244900.a.b.f.b
Characiphysae	ANCESTRAL SPECIES	162	ENSGT01030000234629.E.a.a	ENSGT00950000183193.A.c.b	ENSGT00550000074873.nb.a	ENSGT00410000025739.c.a	ENSGT00950000182933.B.a.a	ENSGT00940000153820.b.b.c.d	ENSGT00940000158312.e	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b.b	ENSGT00940000153882.a.b.b.a	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.a.e	ENSGT00990000206277	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000160261.h	ENSGT00940000160092.A.f	ENSGT00930000151196.a.a	ENSGT00940000161121	ENSGT01050000244900.a.b.f.b
Channel catfish	MODERN SPECIES													ENSIPUG00000005797	slc6a16b (ENSIPUG00000005776)	SLC17A7 (ENSIPUG00000005699)	ENSIPUG00000005657	zgc:91999 (ENSIPUG00000005647) ##22	LRRC4B (ENSIPUG00000005616)	mybpc2b (ENSIPUG00000005584)	ENSIPUG00000005562	NTN3 (ENSIPUG00000005515)	nog2 (ENSIPUG00000005506)	ENSIPUG00000005482	capn15 (ENSIPUG00000005430)	MSS51 (ENSIPUG00000005413)	MSS51 (ENSIPUG00000004676)	tbc1d24 (ENSIPUG00000004669)	atp6v0cb (ENSIPUG00000004647)	nubp2 (ENSIPUG00000004626)	ENSIPUG00000004611	ENSIPUG00000004581	ENSIPUG00000004554
Characiphysae_b	ANCESTRAL SPECIES	279																ENSGT00950000182973.b.b.d ##22	ENSGT00940000160261.h	ENSGT00940000160092.A.f	ENSGT00930000151196.a.a	ENSGT00940000161121	ENSGT01050000244900.a.b.f.b
Electric eel	MODERN SPECIES	1308															ENSEEEG00000010598	zgc:91999 (ENSEEEG00000010599) ##22
Characoidei	ANCESTRAL SPECIES	416																ENSGT00950000182973.b.b.d ##22	ENSGT00940000160261.h	ENSGT00940000160092.A.f	ENSGT00930000151196.a.a	ENSGT00940000161121
Mexicana tetra	MODERN SPECIES	1090																zgc:91999 (ENSAMXG00000037604) ##22	LRRC4B (ENSAMXG00000011184)	mybpc2b (ENSAMXG00000037840)
Cyprinoidei	ANCESTRAL SPECIES	90	ENSGT00950000183193.A.c.b	ENSGT00550000074873.nb.a	ENSGT00410000025739.c.a	ENSGT00940000153820.b.b.c	ENSGT00950000182933.B.a.a	ENSGT00940000153820.b.b.d	ENSGT00940000158312.e	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b.b	ENSGT00940000153882.a.b.b.a	ENSGT00940000158125.a	ENSGT00940000163157.a.e	ENSGT00940000159110.a.e	ENSGT00990000206277	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000160261.h	ENSGT00940000160092.A	ENSGT00930000151196.a.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	455	ENSGT01030000234586.A.a.a.a.a	ENSGT00940000155286.m.a.d	ENSGT00950000183193.A.c.b	ENSGT00410000025739.c.a.m	ENSGT00940000153820.b.b.d	ENSGT00940000158312.e.h	ENSGT00940000163984.B.d	ENSGT00390000006009.a.a.b.b.c	ENSGT00940000153882.a.b.b.a.f	ENSGT00940000158125.a.d	ENSGT00940000163157.a.e.b	ENSGT00940000159110.a.e.d	ENSGT00990000206277	ENSGT01050000244808.D	ENSGT00940000153561.b.a.b.a.b.x	ENSGT00950000182973.b.b.d.a ##22	ENSGT00940000160261.h.d	ENSGT00940000160092.A.h	ENSGT00930000151196.a.a.a
Cyprininae_a	ANCESTRAL SPECIES	378	ENSGT01030000234586.A.a.a.a.a	ENSGT00940000155286.m.a.d	ENSGT00950000183193.A.c.b	ENSGT00410000025739.c.a.m	ENSGT00950000182933.B.a.a	ENSGT00940000153820.b.b.d	ENSGT00940000158312.e.h	ENSGT00940000163071	ENSGT00390000006009.a.a.b.b.c	ENSGT00940000153882.a.b.b.a.f	ENSGT00940000158125.a.d	ENSGT00940000163157.a.e.b	ENSGT00940000159110.a.e.d	ENSGT01050000244808.D	ENSGT00940000153561.b.a.b.a.b.w.b	ENSGT00950000182973.b.b.d.a ##22	ENSGT00940000160261.h.d	ENSGT00940000160092.A.h	ENSGT00930000151196.a.a.a
Common carp reference	MODERN SPECIES	14	ENSCCRG00000072560	dcun1d3 (ENSCCRG00000005088)	ENSCCRG00000019061	ENSCCRG00000004456	nubp2 (ENSCCRG00000002956)	atp6v0cb (ENSCCRG00000063004)	ENSCCRG00000044012	ENSCCRG00000055551	ENSCCRG00000027935	ENSCCRG00000074766	ENSCCRG00000005096	slc6a16b (ENSCCRG00000005089)	ENSCCRG00000065594	zgc:154125 (ENSCCRG00000052480)	ENSCCRG00000079160	ENSCCRG00000048345 ##22	ENSCCRG00000048343	mybpc2b (ENSCCRG00000057582)	ENSCCRG00000081491	ENSCCRG00000065638	ENSCCRG00000073761	ENSCCRG00000068938	ENSCCRG00000057241	ENSCCRG00000055852	ENSCCRG00000075848	ENSCCRG00000076371	ENSCCRG00000063041	ENSCCRG00000052313	ENSCCRG00000042410	metrn (ENSCCRG00000052315)	ENSCCRG00000052318
Golden-line barbel	MODERN SPECIES	574	ENSSGRG00000022796	ENSSGRG00000022798	nubp2 (ENSSGRG00000022801)	TBC1D24 (ENSSGRG00000022808)	ENSSGRG00000022822	MSS51 (ENSSGRG00000022823)	CAPN15 (ENSSGRG00000022827)	ENSSGRG00000022902	nog2 (ENSSGRG00000022904)	ntn2 (ENSSGRG00000022905)	ENSSGRG00000022906	slc6a16b (ENSSGRG00000022911)	SLC17A7 (ENSSGRG00000022922)	ENSSGRG00000023267	ENSSGRG00000023270	zgc:91999 (ENSSGRG00000023273) ##22	LRRC4B (ENSSGRG00000023277)	ENSSGRG00000023278	ENSSGRG00000023285	crp2 (ENSSGRG00000023286)	ENSSGRG00000023287	ENSSGRG00000023289	metrn (ENSSGRG00000023290)	ENSSGRG00000023291	IFT140 (ENSSGRG00000023293)	tmem204 (ENSSGRG00000023325)	rab11fip3 (ENSSGRG00000023327)	decr2 (ENSSGRG00000023328)	ENSSGRG00000023329	zgc:112185 (ENSSGRG00000023330)	ENSSGRG00000023331
Cyprininae	ANCESTRAL SPECIES	297	ENSGT00940000165198	ENSGT00530000063937.b	ENSGT01030000234629.E.a.a	ENSGT00550000074873.nb.a	ENSGT00410000025739.c.a.n	ENSGT00950000182933.B.a.a	ENSGT00940000153820.b.b.c	ENSGT00940000158312.e.g	ENSGT00940000163984.B.c	ENSGT00390000006009.a.a.b.b.d	ENSGT00940000153882.a.b.b.a.e	ENSGT00940000158125.a.c	ENSGT00940000163157.a.e.a	ENSGT00940000159110.a.e.c	ENSGT00940000153561.b.a.b.a.b.w.a	ENSGT00950000182973.b.b.d.b ##22	ENSGT00940000160261.h.c	ENSGT00940000160092.A.g	ENSGT00930000151196.a.a.b	ENSGT01090000260033.a.a.a.a.b.a.a.b.b.b.a.b	ENSGT01030000234589.h.c.b.a.b	ENSGT01090000260033.a.a.a.a.b.a.a.b.b.b.a.a	ENSGT00940000161121.c	ENSGT01100000263515.a.b.a.b.a.h.b.b.b.a	ENSGT01100000263515.a.b.a.b.a.h.a.b	ENSGT00530000063870.b.e	ENSGT01100000263515.a.b.a.b.a.h.b.b.b.b	ENSGT00390000001390.b.f
Goldfish	MODERN SPECIES	16	ENSCARG00000010879	ENSCARG00000010894	ENSCARG00000010912	atp6v0cb (ENSCARG00000010923)	TBC1D24 (ENSCARG00000010943)	MSS51 (ENSCARG00000010951)	CAPN15 (ENSCARG00000010967)	ENSCARG00000011014	ntn2 (ENSCARG00000011043)	ENSCARG00000011054	slc6a16b (ENSCARG00000011070)	SLC17A7 (ENSCARG00000011096)	ENSCARG00000011633	ENSCARG00000013309	ENSCARG00000013313	zgc:91999 (ENSCARG00000013317) ##22	LRRC4B (ENSCARG00000013320)	mybpc2b (ENSCARG00000013548)	ENSCARG00000021577	ENSCARG00000021584	ENSCARG00000021591	ENSCARG00000021605	ENSCARG00000021617	ENSCARG00000021631	ENSCARG00000021634	ENSCARG00000021642	ENSCARG00000021652	ENSCARG00000021672	ENSCARG00000021688	ENSCARG00000021707	ENSCARG00000021716
Cyprininae_a	ANCESTRAL SPECIES	328	ENSGT00940000165198	ENSGT00530000063937.b	ENSGT01030000234629.E.a.a	ENSGT00550000074873.nb.a	ENSGT00410000025739.c.a.n	ENSGT00940000153820.b.b.c	ENSGT00940000158312.e.g	ENSGT00940000163984.B.c	ENSGT00390000006009.a.a.b.b.d	ENSGT00940000153882.a.b.b.a.e	ENSGT00940000158125.a.c	ENSGT00940000163157.a.e.a	ENSGT00940000159110.a.e.c	ENSGT00990000206277	ENSGT00940000153561.b.a.b.a.b.x	ENSGT00950000182973.b.b.d.b ##22	ENSGT00940000160261.h.c	ENSGT00940000160092.A.g	ENSGT00930000151196.a.a.b
Common carp reference	MODERN SPECIES	40	atp6v0cb (ENSCCRG00000021823)	ENSCCRG00000027878	ENSCCRG00000072839	ENSCCRG00000059977	ENSCCRG00000027931	ENSCCRG00000013894	ENSCCRG00000020673	nog2 (ENSCCRG00000063826)	ntn2 (ENSCCRG00000020665)	ENSCCRG00000067153	slc6a16b (ENSCCRG00000052572)	ENSCCRG00000076957	ENSCCRG00000041478	ENSCCRG00000048349	ENSCCRG00000057722	ENSCCRG00000047839 ##22	ENSCCRG00000053963	mybpc2b (ENSCCRG00000047854)	ENSCCRG00000066479	ENSCCRG00000013446	ENSCCRG00000055771	ENSCCRG00000069874	ENSCCRG00000059490	ENSCCRG00000069613	ENSCCRG00000054310	ENSCCRG00000039715	ENSCCRG00000020863	ENSCCRG00000010068	ENSCCRG00000058033	ENSCCRG00000078341	ENSCCRG00000066250
Golden-line barbel	MODERN SPECIES	471								nog2 (ENSSGRG00000033476)	ntn2 (ENSSGRG00000033475)	ENSSGRG00000033474	slc6a16b (ENSSGRG00000033471)	SLC17A7 (ENSSGRG00000033470)	ENSSGRG00000033469	ENSSGRG00000033468	ENSSGRG00000033465	zgc:91999 (ENSSGRG00000033462) ##22	LRRC4B (ENSSGRG00000033461)	mybpc2b (ENSSGRG00000031552)	ENSSGRG00000031507	ENSSGRG00000031506	ENSSGRG00000031505	ENSSGRG00000031502	ENSSGRG00000031501	ENSSGRG00000031500	ENSSGRG00000031499	ENSSGRG00000031498	ENSSGRG00000031497	ENSSGRG00000031496	ENSSGRG00000031495	ENSSGRG00000031494	ENSSGRG00000031492
Zebrafish	MODERN SPECIES	16	atp6v0cb (ENSDARG00000036577)	TBC1D24 (ENSDARG00000069339)	ENSDARG00000015527	ENSDARG00000075463	CAPN15 (ENSDARG00000060600)	nog2 (ENSDARG00000043066)	ntn2 (ENSDARG00000076748)	ENSDARG00000003313	ENSDARG00000087102	slc6a16b (ENSDARG00000102377)	SLC17A7 (ENSDARG00000090106)	zgc:154125 (ENSDARG00000071463)	ENSDARG00000097702	LRRC4B (ENSDARG00000014792)	mybpc2b (ENSDARG00000021265)	zgc:91999 (ENSDARG00000105001) ##22	ENSDARG00000113944	ENSDARG00000117030	ENSDARG00000109863	ENSDARG00000113786	ENSDARG00000110046	ENSDARG00000079987	ENSDARG00000093855	ENSDARG00000078763	ENSDARG00000111761	ENSDARG00000093272	ENSDARG00000071460	crp7 (ENSDARG00000071456)	crp6 (ENSDARG00000071457)	ENSDARG00000095730	ENSDARG00000056498
Euteleosteomorpha	ANCESTRAL SPECIES	62	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00940000154959	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT01020000230627	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00600000085580	ENSGT00940000165156	ENSGT00940000177683	ENSGT00940000164729.a.b	ENSGT00650000094874	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT01060000248742	ENSGT00730000110939.a	ENSGT00550000075088.a.a	ENSGT00940000160374
Acanthomorphata	ANCESTRAL SPECIES	23	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00940000154959	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT01020000230627	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00600000085580	ENSGT00940000165156	ENSGT00940000177683	ENSGT00940000164729.a.b	ENSGT00650000094874	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665
Euacanthomorphacea	ANCESTRAL SPECIES	6	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT01020000230627	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00600000085580	ENSGT00940000165156	ENSGT00940000177683	ENSGT00940000164729.a.b	ENSGT00650000094874	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665
Percomorphaceae	ANCESTRAL SPECIES	5	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT01020000230627	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00600000085580	ENSGT00940000165156	ENSGT00940000177683	ENSGT00940000164729.a.b	ENSGT00650000094874	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665
Tiger tail seahorse	MODERN SPECIES	11	ENSHCOG00000017875	med24 (ENSHCOG00000017924)	ENSHCOG00000017969	ENSHCOG00000017985	lyrm1 (ENSHCOG00000017993)	dcun1d3 (ENSHCOG00000017999)	cox6b1 (ENSHCOG00000018010)	ENSHCOG00000018030	ENSHCOG00000018044	ENSHCOG00000018048	ENSHCOG00000018155	slc6a16b (ENSHCOG00000018183)	SLC17A7 (ENSHCOG00000018207)	ENSHCOG00000018218	ENSHCOG00000018250	zgc:91999 (ENSHCOG00000018284) ##22	ENSHCOG00000018314
Percomorphaceae_B	ANCESTRAL SPECIES	4	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT01020000230627	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00600000085580	ENSGT00940000165156	ENSGT00940000177683	ENSGT00940000164729.a.b	ENSGT00650000094874	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665
Percomorphaceae_C	ANCESTRAL SPECIES	14	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT01020000230627	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00600000085580	ENSGT00940000165156	ENSGT00940000177683	ENSGT00940000164729.a.b	ENSGT00650000094874	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665
Eupercaria	ANCESTRAL SPECIES	10	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT01020000230627	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00600000085580	ENSGT00940000165156	ENSGT00940000177683	ENSGT00940000164729.a.b	ENSGT00650000094874	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665
Tetraodontidae	ANCESTRAL SPECIES		ENSGT00940000164208	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00600000085580	ENSGT00940000165156	ENSGT00940000177683	ENSGT00940000164729.a.b	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359	ENSGT00390000017838
Fugu	MODERN SPECIES		ENSTRUG00000016397	ENSTRUG00000016396	med24 (ENSTRUG00000016382)	ENSTRUG00000020666	dcun1d3 (ENSTRUG00000021398)	KATNIP (ENSTRUG00000016359)	cox6b1 (ENSTRUG00000016356)	ENSTRUG00000016352	luc7l (ENSTRUG00000016335)	ENSTRUG00000016265	slc6a16b (ENSTRUG00000016167)	SLC17A7 (ENSTRUG00000016136)	ENSTRUG00000021329	ENSTRUG00000030898	SHANK1 (ENSTRUG00000016035)	zgc:91999 (ENSTRUG00000015998) ##22	ENSTRUG00000030230	znf668 (ENSTRUG00000020313)	ENSTRUG00000027067	ENSTRUG00000025597	RNF40 (ENSTRUG00000015777)	phkg2 (ENSTRUG00000015722)	ENSTRUG00000023833	ENSTRUG00000015691	ube2ia (ENSTRUG00000015684)	kctd5a (ENSTRUG00000015652)	pdpk1b (ENSTRUG00000015599)	tsr3 (ENSTRUG00000015589)	gnptg (ENSTRUG00000019704)	ENSTRUG00000019560	ENSTRUG00000031326
Tetraodon	MODERN SPECIES	13	ENSTNIG00000012850	GJD3 (ENSTNIG00000012849)	top2a (ENSTNIG00000012848)	ENSTNIG00000012847	med24 (ENSTNIG00000012846)	ENSTNIG00000012845	lyrm1 (ENSTNIG00000012844)	dcun1d3 (ENSTNIG00000012843)	KATNIP (ENSTNIG00000012842)	ENSTNIG00000001059	luc7l (ENSTNIG00000012841)	ENSTNIG00000012840	slc6a16b (ENSTNIG00000012839)	SLC17A7 (ENSTNIG00000012838)	ENSTNIG00000012837	zgc:91999 (ENSTNIG00000012836) ##22	znf668 (ENSTNIG00000001044)	ENSTNIG00000000073	RNF40 (ENSTNIG00000012835)	phkg2 (ENSTNIG00000012834)	ENSTNIG00000012833	ENSTNIG00000012832	ENSTNIG00000001800	kctd5a (ENSTNIG00000012831)	pdpk1b (ENSTNIG00000012830)	tsr3 (ENSTNIG00000012829)	gnptg (ENSTNIG00000012828)	ENSTNIG00000000534	ENSTNIG00000001045	UQCC4 (ENSTNIG00000000770)	zgc:112185 (ENSTNIG00000000210)
Eupecaria_A	ANCESTRAL SPECIES	1	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT01020000230627	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00600000085580	ENSGT00940000165156	ENSGT00940000177683	ENSGT00940000164729.a.b	ENSGT00650000094874	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665
Ballan wrasse	MODERN SPECIES	103				DCUN1D3 (ENSLBEG00000017092)	ENSLBEG00000017074	ENSLBEG00000017054	cox6b1 (ENSLBEG00000017032)	ENSLBEG00000016996	ENSLBEG00000016960	luc7l (ENSLBEG00000016917)	ENSLBEG00000016849	slc6a16b (ENSLBEG00000016766)	SLC17A7 (ENSLBEG00000016707)	ENSLBEG00000016668	ENSLBEG00000016620	ENSLBEG00000016598 ##22	ENSLBEG00000016588	znf668 (ENSLBEG00000016574)	ENSLBEG00000016562	ENSLBEG00000016537	RNF40 (ENSLBEG00000016478)	phkg2 (ENSLBEG00000016418)	ENSLBEG00000016389	ENSLBEG00000016347	ube2ia (ENSLBEG00000016326)	kctd5a (ENSLBEG00000016257)	pdpk1b (ENSLBEG00000016210)	tsr3 (ENSLBEG00000016169)	gnptg (ENSLBEG00000016080)	C7orf50 (ENSLBEG00000016043)	ENSLBEG00000016029
Eupecaria_B	ANCESTRAL SPECIES	3	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT01020000230627	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00600000085580	ENSGT00940000165156	ENSGT00940000177683	ENSGT00940000164729.a.b	ENSGT00650000094874	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665
Perciformes	ANCESTRAL SPECIES	9	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT01020000230627	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00940000165156	ENSGT00530000067530	ENSGT00940000164729.a.b	ENSGT00650000094874	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359
Perciformes_a	ANCESTRAL SPECIES	8	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT01020000230627	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000177683	ENSGT00940000165156	ENSGT00940000164729.a.b	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359	ENSGT00390000006068	ENSGT00940000154307.A
Pike perch	MODERN SPECIES	89	ENSSLUG00000017300	ENSSLUG00000017293	med24 (ENSSLUG00000017095)	lyrm1 (ENSSLUG00000017035)	dcun1d3 (ENSSLUG00000017030)	cox6b1 (ENSSLUG00000017020)	ENSSLUG00000016883	ENSSLUG00000016858	ENSSLUG00000016852	luc7l (ENSSLUG00000016844)	ENSSLUG00000016741	slc6a16b (ENSSLUG00000016723)	SLC17A7 (ENSSLUG00000016701)	ENSSLUG00000016690	ENSSLUG00000016679	zgc:91999 (ENSSLUG00000016672) ##22	ENSSLUG00000016665	znf668 (ENSSLUG00000016656)	ENSSLUG00000016655	RNF40 (ENSSLUG00000016518)	phkg2 (ENSSLUG00000016460)	ccdc189 (ENSSLUG00000016445)	ENSSLUG00000016432	ENSSLUG00000016414	ube2ia (ENSSLUG00000016403)	kctd5a (ENSSLUG00000016398)	pdpk1b (ENSSLUG00000014406)	tsr3 (ENSSLUG00000014284)	gnptg (ENSSLUG00000014177)	ENSSLUG00000014163	ENSSLUG00000014156
Channel bull blenny	MODERN SPECIES	10	ENSCGOG00000010918	med24 (ENSCGOG00000009948)	ENSCGOG00000009913	lyrm1 (ENSCGOG00000009911)	dcun1d3 (ENSCGOG00000009910)	KATNIP (ENSCGOG00000009898)	cox6b1 (ENSCGOG00000009885)	ENSCGOG00000009877	luc7l (ENSCGOG00000009866)	ENSCGOG00000009859	slc6a16b (ENSCGOG00000009837)	SLC17A7 (ENSCGOG00000007486)	ENSCGOG00000007446	ENSCGOG00000007445	ENSCGOG00000007442	zgc:91999 (ENSCGOG00000007420) ##22	ENSCGOG00000007415	znf668 (ENSCGOG00000007414)	ENSCGOG00000007412	RNF40 (ENSCGOG00000007042)	ccdc189 (ENSCGOG00000006341)	phkg2 (ENSCGOG00000006362)	ENSCGOG00000006328	ENSCGOG00000006324	ube2ia (ENSCGOG00000006194)	kctd5a (ENSCGOG00000006178)	pdpk1b (ENSCGOG00000006095)	tsr3 (ENSCGOG00000006082)	gnptg (ENSCGOG00000005937)	ENSCGOG00000005932	ENSCGOG00000005927
Cottioidei	ANCESTRAL SPECIES	12	ENSGT00940000164208	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00940000165156	ENSGT00530000067530	ENSGT00940000164729.a.b	ENSGT00650000094874	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359
Lumpfish	MODERN SPECIES	10	KATNIP (ENSCLMG00005007415)	dcun1d3 (ENSCLMG00005007442)	lyrm1 (ENSCLMG00005007444)	ENSCLMG00005007447	med24 (ENSCLMG00005007450)	ENSCLMG00005007453	ENSCLMG00005007455	TOP2A (ENSCLMG00005007456)	ENSCLMG00005007458	luc7l (ENSCLMG00005007459)	ENSCLMG00005007462	slc6a16b (ENSCLMG00005007463)	SLC17A7 (ENSCLMG00005007520)	ENSCLMG00005007523	SHANK1 (ENSCLMG00005007535)	zgc:91999 (ENSCLMG00005007661) ##22	ENSCLMG00005007662	znf668 (ENSCLMG00005007663)	ENSCLMG00005007664	ENSCLMG00005007665	RNF40 (ENSCLMG00005007667)	phkg2 (ENSCLMG00005007717)	ccdc189 (ENSCLMG00005007720)	ENSCLMG00005007722	ube2ia (ENSCLMG00005007735)	kctd5a (ENSCLMG00005007736)	pdpk1b (ENSCLMG00005007749)	tsr3 (ENSCLMG00005009250)	gnptg (ENSCLMG00005009251)	ENSCLMG00005009252	ENSCLMG00005009253
Stickleback	MODERN SPECIES	5	med24 (ENSGACG00000008529)	ENSGACG00000008541	lyrm1 (ENSGACG00000008548)	dcun1d3 (ENSGACG00000008562)	KATNIP (ENSGACG00000008564)	cox6b1 (ENSGACG00000008583)	ENSGACG00000008595	luc7l (ENSGACG00000008627)	ENSGACG00000008640	slc6a16b (ENSGACG00000008665)	SLC17A7 (ENSGACG00000008670)	ENSGACG00000008675	ENSGACG00000008680	ENSGACG00000008686	SHANK1 (ENSGACG00000008689)	zgc:91999 (ENSGACG00000008706) ##22	ENSGACG00000008717	ENSGACG00000008723	znf668 (ENSGACG00000008728)	ENSGACG00000008733	ENSGACG00000008777	RNF40 (ENSGACG00000008782)	phkg2 (ENSGACG00000008802)	ENSGACG00000008870	ENSGACG00000008873	ENSGACG00000008886	ube2ia (ENSGACG00000008893)	kctd5a (ENSGACG00000008924)	pdpk1b (ENSGACG00000008933)	tsr3 (ENSGACG00000008959)	gnptg (ENSGACG00000008965)
Eupecaria_C	ANCESTRAL SPECIES	1	ENSGT00940000164208	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00600000085580	ENSGT00940000165156	ENSGT00940000177683	ENSGT00940000164729.a.b	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	1	ENSGT00940000164208	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00600000085580	ENSGT00940000165156	ENSGT00940000177683	ENSGT00940000164729.a.b	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359	ENSGT00390000017838
European seabass	MODERN SPECIES	11	ENSDLAG00005024942	ENSDLAG00005025051	LRRC3B (ENSDLAG00005031477)	ENSDLAG00005034292	KCNJ12 (ENSDLAG00005031588)	dcun1d3 (ENSDLAG00005025527)	LYRM1 (ENSDLAG00005025526)	ENSDLAG00005001166	ENSDLAG00005029651	luc7l (ENSDLAG00005001212)	ENSDLAG00005001216	ENSDLAG00005001251	ENSDLAG00005001425	ENSDLAG00005001792	ENSDLAG00005001804	ENSDLAG00005001825 ##22	znf668 (ENSDLAG00005001872)	ENSDLAG00005001875	ENSDLAG00005001884	ENSDLAG00005001929	PHKG2 (ENSDLAG00005002972)	ENSDLAG00005003355	ENSDLAG00005003559	UBE2I (ENSDLAG00005003573)	ENSDLAG00005031692	ENSDLAG00005003673	ENSDLAG00005004760	ENSDLAG00005030251	ENSDLAG00005034972	h3f3d (ENSDLAG00005004948)	zgc:112185 (ENSDLAG00005004961)
Large yellow croaker	MODERN SPECIES	488	ENSLCRG00005012344	med24 (ENSLCRG00005012314)	ENSLCRG00005012312	lyrm1 (ENSLCRG00005012309)	dcun1d3 (ENSLCRG00005012307)	KATNIP (ENSLCRG00005012305)	cox6b1 (ENSLCRG00005012304)	ENSLCRG00005012302	luc7l (ENSLCRG00005012301)	ENSLCRG00005012300	ENSLCRG00005012088	SLC17A7 (ENSLCRG00005011600)	ENSLCRG00005011583	ENSLCRG00005011576	ENSLCRG00005011579	zgc:91999 (ENSLCRG00005011570) ##22	ENSLCRG00005011565	ENSLCRG00005011560	znf668 (ENSLCRG00005011556)	ENSLCRG00005011555	RNF40 (ENSLCRG00005011434)	phkg2 (ENSLCRG00005011429)	ENSLCRG00005011427	ENSLCRG00005011425	ENSLCRG00005011423	ube2ia (ENSLCRG00005011384)	kctd5a (ENSLCRG00005011379)	pdpk1b (ENSLCRG00005010738)	tsr3 (ENSLCRG00005010703)	gnptg (ENSLCRG00005010687)	ENSLCRG00005010683
Gilthead seabream	MODERN SPECIES	12	GJD3 (ENSSAUG00010011207)	top2a (ENSSAUG00010011221)	ENSSAUG00010014096	ENSSAUG00010014098	med24 (ENSSAUG00010014117)	lyrm1 (ENSSAUG00010014210)	dcun1d3 (ENSSAUG00010014212)	KATNIP (ENSSAUG00010014222)	ENSSAUG00010014237	luc7l (ENSSAUG00010014242)	ENSSAUG00010014255	slc6a16b (ENSSAUG00010014258)	SLC17A7 (ENSSAUG00010014309)	ENSSAUG00010014481	SHANK1 (ENSSAUG00010014486)	zgc:91999 (ENSSAUG00010014490) ##22	ENSSAUG00010014493	ENSSAUG00010014497	znf668 (ENSSAUG00010014499)	ENSSAUG00010014503	RNF40 (ENSSAUG00010014508)	phkg2 (ENSSAUG00010014572)	ccdc189 (ENSSAUG00010014576)	ENSSAUG00010014580	ENSSAUG00010014581	ube2ia (ENSSAUG00010014584)	kctd5a (ENSSAUG00010014587)	pdpk1b (ENSSAUG00010014638)	tsr3 (ENSSAUG00010016374)	gnptg (ENSSAUG00010016376)	C7orf50 (ENSSAUG00010016381)
Percomorphaceae_D	ANCESTRAL SPECIES	13	ENSGT00940000164208	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00950000182924.A.a	ENSGT00600000085580	ENSGT00940000165156	ENSGT00940000164729.a.b	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359
Carangaria	ANCESTRAL SPECIES	13	ENSGT00940000164208	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00600000085580	ENSGT00940000165156	ENSGT00940000164729.a.b	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359	ENSGT00390000017838
Pleuronectoidei	ANCESTRAL SPECIES	6	ENSGT00940000164208	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00950000182924.A.a	ENSGT00600000085580	ENSGT00940000165156	ENSGT00940000164729.a.b	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359	ENSGT00390000017838
Tongue sole	MODERN SPECIES	18	top2a (ENSCSEG00000012668)	ENSCSEG00000012653	ENSCSEG00000012647	med24 (ENSCSEG00000012626)	ENSCSEG00000012619	lyrm1 (ENSCSEG00000012609)	dcun1d3 (ENSCSEG00000012606)	ENSCSEG00000012566	cox6b1 (ENSCSEG00000012552)	luc7l (ENSCSEG00000012535)	ENSCSEG00000012501	slc6a16b (ENSCSEG00000012489)	SLC17A7 (ENSCSEG00000012476)	ENSCSEG00000012447	SHANK1 (ENSCSEG00000012421)	zgc:91999 (ENSCSEG00000012409) ##22	ENSCSEG00000012401	znf668 (ENSCSEG00000012396)	ENSCSEG00000012389	RNF40 (ENSCSEG00000012378)	ccdc189 (ENSCSEG00000012372)	phkg2 (ENSCSEG00000012354)	ENSCSEG00000012337	ENSCSEG00000012308	ENSCSEG00000012294	ube2ia (ENSCSEG00000012272)	kctd5a (ENSCSEG00000012252)	pdpk1b (ENSCSEG00000012164)	tsr3 (ENSCSEG00000012153)	gnptg (ENSCSEG00000012145)	ENSCSEG00000012131
Turbot	MODERN SPECIES	9	ENSSMAG00000033948	ENSSMAG00000011616	ENSSMAG00000011625	lyrm1 (ENSSMAG00000028587)	dcun1d3 (ENSSMAG00000011768)	ENSSMAG00000011778	cox6b1 (ENSSMAG00000011804)	ENSSMAG00000011912	luc7l (ENSSMAG00000011965)	ENSSMAG00000011995	ENSSMAG00000012056	ENSSMAG00000012109	ENSSMAG00000025266	ENSSMAG00000032480	ENSSMAG00000012171	ENSSMAG00000012275 ##22	ENSSMAG00000012321	ENSSMAG00000012369	znf668 (ENSSMAG00000012376)	ENSSMAG00000012378	ENSSMAG00000012384	ENSSMAG00000012480	ENSSMAG00000037236	ENSSMAG00000028015	ENSSMAG00000012514	ENSSMAG00000026374	ENSSMAG00000012548	ENSSMAG00000012558	pdpk1b (ENSSMAG00000012584)	ENSSMAG00000012626	gnptg (ENSSMAG00000012637)
Carangaria_A	ANCESTRAL SPECIES	5	ENSGT00940000164208	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00940000165156	ENSGT00940000164729.a.b	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359	ENSGT00390000017838	ENSGT00390000006068
Barramundi perch	MODERN SPECIES	38	ENSLCAG00010010120	ENSLCAG00010010117	med24 (ENSLCAG00010010092)	dcun1d3 (ENSLCAG00010010074)	lyrm1 (ENSLCAG00010010069)	KATNIP (ENSLCAG00010010056)	cox6b1 (ENSLCAG00010010045)	ENSLCAG00010010040	luc7l (ENSLCAG00010010032)	ENSLCAG00010010015	slc6a16b (ENSLCAG00010009998)	SLC17A7 (ENSLCAG00010009912)	ENSLCAG00010009889	ENSLCAG00010009880	ENSLCAG00010009876	zgc:91999 (ENSLCAG00010009869) ##22	ENSLCAG00010009864
Seriola	ANCESTRAL SPECIES	1	ENSGT00940000164208	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00940000165156	ENSGT00940000164729.a.b	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359	ENSGT00390000017838	ENSGT00390000006068
Greater amberjack	MODERN SPECIES	27	ENSSDUG00000003455	med24 (ENSSDUG00000003291)	ENSSDUG00000003238	lyrm1 (ENSSDUG00000003216)	dcun1d3 (ENSSDUG00000003206)	KATNIP (ENSSDUG00000003136)	cox6b1 (ENSSDUG00000003052)	ENSSDUG00000003015	ENSSDUG00000003001	luc7l (ENSSDUG00000002962)	ENSSDUG00000002915	slc6a16b (ENSSDUG00000002861)	SLC17A7 (ENSSDUG00000002820)	ENSSDUG00000002791	SHANK1 (ENSSDUG00000002741)	zgc:91999 (ENSSDUG00000002713) ##22	ENSSDUG00000002695	znf668 (ENSSDUG00000002686)	ENSSDUG00000002675	RNF40 (ENSSDUG00000002602)	phkg2 (ENSSDUG00000002554)	ccdc189 (ENSSDUG00000002535)	ENSSDUG00000002512	ENSSDUG00000002502	ube2ia (ENSSDUG00000002471)	kctd5a (ENSSDUG00000002442)	pdpk1b (ENSSDUG00000002401)	tsr3 (ENSSDUG00000002376)	gnptg (ENSSDUG00000002350)	ENSSDUG00000002343	ENSSDUG00000002331
Yellowtail amberjack	MODERN SPECIES	2248	ENSSLDG00000021725	ENSSLDG00000021712	med24 (ENSSLDG00000021655)	ENSSLDG00000021627	lyrm1 (ENSSLDG00000021614)	dcun1d3 (ENSSLDG00000021606)	KATNIP (ENSSLDG00000021571)	cox6b1 (ENSSLDG00000021459)	ENSSLDG00000021419	luc7l (ENSSLDG00000021375)	ENSSLDG00000021325	slc6a16b (ENSSLDG00000021271)	SLC17A7 (ENSSLDG00000021216)	ENSSLDG00000021183	SHANK1 (ENSSLDG00000018921)	zgc:91999 (ENSSLDG00000018573) ##22	ENSSLDG00000018542	znf668 (ENSSLDG00000018528)	ENSSLDG00000018521
Anabantaria	ANCESTRAL SPECIES	18	ENSGT00940000157539	ENSGT00940000164208	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00600000085580	ENSGT00940000165156	ENSGT00940000164729.a.b	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359	ENSGT00390000017838
Zig-zag eel	MODERN SPECIES	10	ENSMAMG00000008334	ENSMAMG00000027196	ENSMAMG00000008350	lyrm1 (ENSMAMG00000025899)	dcun1d3 (ENSMAMG00000024736)	ENSMAMG00000008730	cox6b1 (ENSMAMG00000008769)	ENSMAMG00000008970	luc7l (ENSMAMG00000009002)	ENSMAMG00000009025	ENSMAMG00000009074	ENSMAMG00000009108	ENSMAMG00000009134	ENSMAMG00000024304	ENSMAMG00000025321	ENSMAMG00000009208 ##22	ENSMAMG00000009258	znf668 (ENSMAMG00000009288)	ENSMAMG00000009313	ENSMAMG00000009321	ENSMAMG00000009367	ENSMAMG00000009389	ENSMAMG00000009409	ENSMAMG00000009588	ENSMAMG00000009603	ENSMAMG00000009623	pdpk1b (ENSMAMG00000009646)	ENSMAMG00000009692	gnptg (ENSMAMG00000009711)	ENSMAMG00000009795	ENSMAMG00000009800
Anabantoidei	ANCESTRAL SPECIES	10	ENSGT00940000157539	ENSGT00940000164208	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00600000085580	ENSGT00940000165156	ENSGT00940000164729.a.b	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359	ENSGT00390000017838
Climbing perch	MODERN SPECIES	10	ENSATEG00000028770	ENSATEG00000014699	ENSATEG00000014705	ENSATEG00000014727	lyrm1 (ENSATEG00000014820)	dcun1d3 (ENSATEG00000014844)	ENSATEG00000014853	cox6b1 (ENSATEG00000014914)	ENSATEG00000014934	luc7l (ENSATEG00000014946)	ENSATEG00000014979	ENSATEG00000015029	ENSATEG00000015073	ENSATEG00000015112	ENSATEG00000015135	ENSATEG00000015164 ##22	ENSATEG00000015176	ENSATEG00000015191	znf668 (ENSATEG00000015200)	ENSATEG00000015206	ENSATEG00000015215	ENSATEG00000015300	ENSATEG00000015330	ENSATEG00000015359	ENSATEG00000015407	ENSATEG00000029881	ENSATEG00000026929	pdpk1b (ENSATEG00000015476)	ENSATEG00000015497	gnptg (ENSATEG00000015510)	ENSATEG00000027704
Siamese fighting fish	MODERN SPECIES	9	ENSBSLG00000014942	med24 (ENSBSLG00000014958)	ENSBSLG00000015127	lyrm1 (ENSBSLG00000015129)	dcun1d3 (ENSBSLG00000015133)	KATNIP (ENSBSLG00000015138)	cox6b1 (ENSBSLG00000015346)	ENSBSLG00000015358	luc7l (ENSBSLG00000015387)	ENSBSLG00000015406	slc6a16b (ENSBSLG00000015419)	SLC17A7 (ENSBSLG00000015534)	ENSBSLG00000015606	ENSBSLG00000015625	ENSBSLG00000016613	zgc:91999 (ENSBSLG00000016659) ##22	ENSBSLG00000016717	znf668 (ENSBSLG00000016833)	ENSBSLG00000016876	RNF40 (ENSBSLG00000016918)	phkg2 (ENSBSLG00000017380)	ENSBSLG00000017533	ENSBSLG00000017544	ENSBSLG00000017612	ube2ia (ENSBSLG00000017621)	kctd5a (ENSBSLG00000017643)	pdpk1b (ENSBSLG00000017733)	tsr3 (ENSBSLG00000018025)	gnptg (ENSBSLG00000018036)	ENSBSLG00000018046	ENSBSLG00000018051
Ovalentaria	ANCESTRAL SPECIES	13	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT01020000230627	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00600000085580	ENSGT00940000165156	ENSGT00940000164729.a.b	ENSGT00650000094874	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359
Atherinomorphae	ANCESTRAL SPECIES	10	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT01020000230627	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00940000165156	ENSGT00940000164729.a.b	ENSGT00650000094874	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359	ENSGT00390000017838
Oryzias	ANCESTRAL SPECIES	11	ENSGT00950000183092.b.a.a	ENSGT00390000012628.k.c.b.b	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00940000177683	ENSGT00940000165156	ENSGT00940000164729.a.b	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359	ENSGT00390000017838
Oryzias_b	ANCESTRAL SPECIES	9	ENSGT00390000012628.k.c.b.b	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT01000000222223	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00950000182924.A.a	ENSGT00940000177683	ENSGT00940000165156	ENSGT00940000164729.a.b	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359	ENSGT00390000017838
Indian medaka	MODERN SPECIES	17	ENSOMEG00000015028	med24 (ENSOMEG00000015105)	ENSOMEG00000015129	lyrm1 (ENSOMEG00000015141)	dcun1d3 (ENSOMEG00000000384)	KATNIP (ENSOMEG00000015192)	cox6b1 (ENSOMEG00000015206)	ENSOMEG00000015246	luc7l (ENSOMEG00000015275)	ENSOMEG00000015308	slc6a16b (ENSOMEG00000015382)	ENSOMEG00000015408	SLC17A7 (ENSOMEG00000015470)	ENSOMEG00000015483	ENSOMEG00000015523	zgc:91999 (ENSOMEG00000015565) ##22	ENSOMEG00000015626	ENSOMEG00000015643	znf668 (ENSOMEG00000015649)	ENSOMEG00000015658	RNF40 (ENSOMEG00000015737)	phkg2 (ENSOMEG00000015773)	ENSOMEG00000015788	ENSOMEG00000015815	ube2ia (ENSOMEG00000015845)	kctd5a (ENSOMEG00000015886)	pdpk1b (ENSOMEG00000015947)	tsr3 (ENSOMEG00000015987)	gnptg (ENSOMEG00000016021)	ENSOMEG00000016029	ENSOMEG00000016036
Javanese ricefish	MODERN SPECIES	10	ENSOJAG00000009463	med24 (ENSOJAG00000008932)	ENSOJAG00000008860	lyrm1 (ENSOJAG00000008840)	dcun1d3 (ENSOJAG00000008828)	KATNIP (ENSOJAG00000008811)	cox6b1 (ENSOJAG00000008783)	ENSOJAG00000008763	luc7l (ENSOJAG00000008674)	ENSOJAG00000008640	slc6a16b (ENSOJAG00000008407)	SLC17A7 (ENSOJAG00000021606)	ENSOJAG00000021519	ENSOJAG00000021501	ENSOJAG00000021492	zgc:91999 (ENSOJAG00000021476) ##22	ENSOJAG00000021460	ENSOJAG00000021448	znf668 (ENSOJAG00000021443)	ENSOJAG00000021436	ENSOJAG00000021425	RNF40 (ENSOJAG00000021273)	phkg2 (ENSOJAG00000021196)	ENSOJAG00000021175	ENSOJAG00000021051	ube2ia (ENSOJAG00000021045)	kctd5a (ENSOJAG00000021030)	pdpk1b (ENSOJAG00000020572)	tsr3 (ENSOJAG00000020510)	gnptg (ENSOJAG00000020475)	ENSOJAG00000020444
Oryzias_a	ANCESTRAL SPECIES	17	ENSGT00950000183092.b.a.a	ENSGT00390000012628.k.c.b.b	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00940000165156	ENSGT00940000164729.a.b	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359	ENSGT00390000017838	ENSGT00940000154307.A
Chinese medaka	DUPLICATION
Chinese medaka	MODERN SPECIES	4159																zgc:91999 (ENSOSIG00000013594) ##22
Chinese medaka	MODERN SPECIES	1099	MED1 (ENSOSIG00000015365)	STAC2 (ENSOSIG00000015363)	rpl19 (ENSOSIG00000015362)	ENSOSIG00000015361	med24 (ENSOSIG00000015337)	lyrm1 (ENSOSIG00000015334)	dcun1d3 (ENSOSIG00000015333)	ENSOSIG00000015331	cox6b1 (ENSOSIG00000015329)	ENSOSIG00000015328	luc7l (ENSOSIG00000015324)	ENSOSIG00000015315	slc6a16b (ENSOSIG00000015266)	SLC17A7 (ENSOSIG00000011682)	ENSOSIG00000011675	zgc:91999 (ENSOSIG00000011674) ##22	ENSOSIG00000011672	znf668 (ENSOSIG00000011671)	ENSOSIG00000011670	RNF40 (ENSOSIG00000011268)	phkg2 (ENSOSIG00000011257)	ENSOSIG00000011255	ENSOSIG00000011252	ENSOSIG00000011246	kctd5a (ENSOSIG00000011241)	pdpk1b (ENSOSIG00000009420)	tsr3 (ENSOSIG00000009395)	gnptg (ENSOSIG00000009328)	ENSOSIG00000009317	ENSOSIG00000009315	UQCC4 (ENSOSIG00000009312)
Japanese Medaka HdrR	MODERN SPECIES	10	STAC2 (ENSORLG00000008267)	rpl19 (ENSORLG00000008245)	ENSORLG00000008234	med24 (ENSORLG00000008227)	ENSORLG00000008168	lyrm1 (ENSORLG00000028918)	dcun1d3 (ENSORLG00000008158)	cox6b1 (ENSORLG00000008136)	ENSORLG00000008153	ENSORLG00000008132	luc7l (ENSORLG00000008117)	ENSORLG00000008095	ENSORLG00000008066	ENSORLG00000007982	ENSORLG00000007941	zgc:91999 (ENSORLG00000007914) ##22	ENSORLG00000025921	ENSORLG00000025957	znf668 (ENSORLG00000007891)	ENSORLG00000007885	RNF40 (ENSORLG00000007866)	phkg2 (ENSORLG00000007794)	ENSORLG00000029751	ENSORLG00000030326	ENSORLG00000023799	ube2ia (ENSORLG00000026618)	kctd5a (ENSORLG00000007764)	pdpk1b (ENSORLG00000007757)	tsr3 (ENSORLG00000007723)	gnptg (ENSORLG00000007712)	ENSORLG00000007698
Cyprinodontiformes	ANCESTRAL SPECIES	13	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT01020000230627	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00940000165156	ENSGT00940000164729.a.b	ENSGT00650000094874	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359	ENSGT00390000017838
Aplocheiloidei	ANCESTRAL SPECIES	4	ENSGT00940000164208	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00940000165156	ENSGT00940000164729.a.b	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359	ENSGT00390000017838	ENSGT00390000006068
Mangrove rivulus	MODERN SPECIES	43	ENSKMAG00000010406	ENSKMAG00000010414	med24 (ENSKMAG00000010458)	ENSKMAG00000010572	lyrm1 (ENSKMAG00000010600)	dcun1d3 (ENSKMAG00000010615)	KATNIP (ENSKMAG00000010655)	cox6b1 (ENSKMAG00000010752)	ENSKMAG00000010773	luc7l (ENSKMAG00000010801)	ENSKMAG00000010833	slc6a16b (ENSKMAG00000010880)	SLC17A7 (ENSKMAG00000010957)	ENSKMAG00000011027	SHANK1 (ENSKMAG00000011216)	zgc:91999 (ENSKMAG00000011918) ##22	ENSKMAG00000011942	znf668 (ENSKMAG00000011974)	ENSKMAG00000011982	RNF40 (ENSKMAG00000012004)	phkg2 (ENSKMAG00000012062)	ENSKMAG00000012087	ENSKMAG00000012102	ENSKMAG00000012114	ube2ia (ENSKMAG00000012131)	kctd5a (ENSKMAG00000012164)	pdpk1b (ENSKMAG00000012214)	tsr3 (ENSKMAG00000012259)	gnptg (ENSKMAG00000012272)	ENSKMAG00000012291	ENSKMAG00000012299
Turquoise killifish	MODERN SPECIES	1621	ENSNFUG00015008195	ENSNFUG00015008193	Nfu_g_1_023257 (ENSNFUG00015008189)	med24 (ENSNFUG00015008148)	KCNJ12 (ENSNFUG00015008128)	dcun1d3 (ENSNFUG00015008120)	ENSNFUG00015008096	cox6b1 (ENSNFUG00015008081)	ENSNFUG00015008067	LUC7L (ENSNFUG00015008035)	ENSNFUG00015008024	slc6a16b (ENSNFUG00015007983)	ENSNFUG00015007970	SLC17A7 (ENSNFUG00015006895)	ENSNFUG00015006784	zgc:91999 (ENSNFUG00015006770) ##22	ENSNFUG00015006758	znf668 (ENSNFUG00015006746)	ZNF646 (ENSNFUG00015006743)	RNF40 (ENSNFUG00015006687)	phkg2 (ENSNFUG00015006659)	ENSNFUG00015006646	Nfu_g_1_023381 (ENSNFUG00015006634)	ABLIM1 (ENSNFUG00015006597)	ENSNFUG00015006574	MPRIP (ENSNFUG00015006541)	ENSNFUG00015006518	PER2 (ENSNFUG00015006162)	PIK3CB (ENSNFUG00015005835)	METRN (ENSNFUG00015005800)	ENSNFUG00015005794
Cyprinodontoidei	ANCESTRAL SPECIES	17	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT01020000230627	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00940000165156	ENSGT00940000164729.a.b	ENSGT00650000094874	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359	ENSGT00390000017838	ENSGT00390000006068
NAME_4	ANCESTRAL SPECIES	15	ENSGT00940000153137.b	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00950000182924.A.a	ENSGT00940000165127.b	ENSGT00530000067530	ENSGT00940000165156	ENSGT00940000164729.a.b	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359	ENSGT00390000017838
Mummichog	MODERN SPECIES	2201	cby1 (ENSFHEG00000022392)	PLBD1 (ENSFHEG00000022439)	ENSFHEG00000022496	ENSFHEG00000022556	lyrm1 (ENSFHEG00000022563)	dcun1d3 (ENSFHEG00000022572)	ENSFHEG00000022603	cox6b1 (ENSFHEG00000022615)	ENSFHEG00000022638	luc7l (ENSFHEG00000022662)	ENSFHEG00000022682	ENSFHEG00000022715	SLC17A7 (ENSFHEG00000022757)	ENSFHEG00000022778	SHANK1 (ENSFHEG00000022853)	zgc:91999 (ENSFHEG00000022868) ##22	ENSFHEG00000022881	znf668 (ENSFHEG00000022886)	ENSFHEG00000000561	RNF40 (ENSFHEG00000022908)	phkg2 (ENSFHEG00000000568)	ENSFHEG00000022978	ENSFHEG00000022993	ube2ia (ENSFHEG00000023043)	kctd5a (ENSFHEG00000023074)	pdpk1b (ENSFHEG00000023132)	tsr3 (ENSFHEG00000023149)	gnptg (ENSFHEG00000023157)	ENSFHEG00000023190	ENSFHEG00000023200	ENSFHEG00000023204
Sheepshead minnow	MODERN SPECIES	368	cby1 (ENSCVAG00000023165)	PLBD1 (ENSCVAG00000023149)	ENSCVAG00000023080	ENSCVAG00000023073	ENSCVAG00000022988	lyrm1 (ENSCVAG00000022944)	dcun1d3 (ENSCVAG00000022935)	ENSCVAG00000022918	cox6b1 (ENSCVAG00000022894)	ENSCVAG00000022883	luc7l (ENSCVAG00000022878)	ENSCVAG00000022874	slc6a16b (ENSCVAG00000022856)	ENSCVAG00000022818	SHANK1 (ENSCVAG00000022791)	zgc:91999 (ENSCVAG00000022707) ##22	ENSCVAG00000022661	znf668 (ENSCVAG00000022648)	ENSCVAG00000022644	RNF40 (ENSCVAG00000022625)	phkg2 (ENSCVAG00000022564)	ENSCVAG00000022546	ube2ia (ENSCVAG00000022539)	kctd5a (ENSCVAG00000022511)	pdpk1b (ENSCVAG00000022460)	tsr3 (ENSCVAG00000022421)	gnptg (ENSCVAG00000022416)
Poeciliinae	ANCESTRAL SPECIES	10	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT01020000230627	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00940000165156	ENSGT00940000164729.a.b	ENSGT00650000094874	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359	ENSGT00390000017838	ENSGT00390000006068
Poecilia	ANCESTRAL SPECIES	22	ENSGT00530000063509.A.h	ENSGT00940000167326	ENSGT00940000155955.C.i.b	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT01020000230627	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000165156	ENSGT00940000164729.a.b.a	ENSGT00650000094874	ENSGT00940000164729.a.b.b	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665.c	ENSGT00510000048359	ENSGT00390000017838	ENSGT00390000006068
NAME_6	ANCESTRAL SPECIES	121													ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000165156	ENSGT00940000164729.a.b.a	ENSGT00650000094874	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665.c	ENSGT00510000048359	ENSGT00390000017838	ENSGT00390000006068	ENSGT00940000154307.A
Sailfin molly	MODERN SPECIES	2874															ENSPLAG00000002136	zgc:91999 (ENSPLAG00000002126) ##22
Amazon molly	MODERN SPECIES	887												ENSPFOG00000022596	SLC17A7 (ENSPFOG00000003540)	ENSPFOG00000003996	SHANK1 (ENSPFOG00000004042)	zgc:91999 (ENSPFOG00000004701) ##22	ENSPFOG00000024793	znf668 (ENSPFOG00000004805)	ENSPFOG00000004826	ENSPFOG00000004836	ENSPFOG00000023049	ENSPFOG00000024192
Guppy	MODERN SPECIES	449	pdap1a (ENSPREG00000017154)	PLBD1 (ENSPREG00000017171)	ENSPREG00000017233	lyrm1 (ENSPREG00000017318)	dcun1d3 (ENSPREG00000017339)	ENSPREG00000017354	cox6b1 (ENSPREG00000017368)	ENSPREG00000017392	ENSPREG00000017418	luc7l (ENSPREG00000017430)	ENSPREG00000017448	slc6a16b (ENSPREG00000017473)	SLC17A7 (ENSPREG00000017499)	ENSPREG00000017514	SHANK1 (ENSPREG00000017528)	zgc:91999 (ENSPREG00000017574) ##22	znf668 (ENSPREG00000017631)	ENSPREG00000017637	ENSPREG00000017650	RNF40 (ENSPREG00000017663)	phkg2 (ENSPREG00000017698)	ENSPREG00000017751	ube2ia (ENSPREG00000017779)	kctd5a (ENSPREG00000017801)	pdpk1b (ENSPREG00000017813)	tsr3 (ENSPREG00000017832)	gnptg (ENSPREG00000017858)	C7orf50 (ENSPREG00000017902)	ENSPREG00000017912	ENSPREG00000017925	UQCC4 (ENSPREG00000017939)
Platyfish	MODERN SPECIES	1	ENSXMAG00000004997	ENSXMAG00000005006	lyrm1 (ENSXMAG00000018816)	dcun1d3 (ENSXMAG00000024167)	ENSXMAG00000018633	cox6b1 (ENSXMAG00000018640)	ENSXMAG00000018643	luc7l (ENSXMAG00000018644)	ENSXMAG00000018660	ENSXMAG00000029213	slc6a16b (ENSXMAG00000022899)	SLC17A7 (ENSXMAG00000018700)	ENSXMAG00000018725	SHANK1 (ENSXMAG00000027858)	ENSXMAG00000029947	zgc:91999 (ENSXMAG00000004969) ##22	ENSXMAG00000026140	znf668 (ENSXMAG00000004424)	ENSXMAG00000018743	RNF40 (ENSXMAG00000018747)	phkg2 (ENSXMAG00000018776)	ccdc189 (ENSXMAG00000018831)	ENSXMAG00000018833	ube2ia (ENSXMAG00000018837)	kctd5a (ENSXMAG00000029782)	pdpk1b (ENSXMAG00000018875)	tsr3 (ENSXMAG00000018921)	gnptg (ENSXMAG00000018928)	ENSXMAG00000018950	ENSXMAG00000029415	ENSXMAG00000019424
Ovalentaria_B	ANCESTRAL SPECIES	7	ENSGT00940000164208	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00600000085580	ENSGT00940000165156	ENSGT00940000164729.a.b	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359	ENSGT00390000017838
Cichlidae	ANCESTRAL SPECIES	15	ENSGT00940000164208	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00600000085580	ENSGT00940000165156	ENSGT00940000164729.a.b	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359	ENSGT00390000017838
Pseudocrenilabrinae	ANCESTRAL SPECIES	9	ENSGT00940000164208	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00600000085580	ENSGT00940000165156	ENSGT00940000164729.a.b	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359	ENSGT00390000017838
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	7	ENSGT00940000164208	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00600000085580	ENSGT00940000165156	ENSGT00940000164729.a.b	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359	ENSGT00390000017838
Haplochromini	ANCESTRAL SPECIES	22	ENSGT00940000164208	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00600000085580	ENSGT00940000165156	ENSGT00940000164729.a.b	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359	ENSGT00390000017838
Haplochromini_A	ANCESTRAL SPECIES	24	ENSGT00940000164208	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00600000085580	ENSGT00940000165156	ENSGT00940000164729.a.b	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359	ENSGT00390000017838
P. nyererei	MODERN SPECIES	300	GJD3 (ENSPNYG00000018610)	top2a (ENSPNYG00000018347)	ENSPNYG00000018310	ENSPNYG00000018297	med24 (ENSPNYG00000018219)	lyrm1 (ENSPNYG00000018120)	dcun1d3 (ENSPNYG00000018104)	ENSPNYG00000018075	cox6b1 (ENSPNYG00000017959)	ENSPNYG00000017945	luc7l (ENSPNYG00000017930)	ENSPNYG00000017855	slc6a16b (ENSPNYG00000017815)	SLC17A7 (ENSPNYG00000017760)	ENSPNYG00000017739	zgc:91999 (ENSPNYG00000017707) ##22	ENSPNYG00000017701	znf668 (ENSPNYG00000017697)	ENSPNYG00000017692	RNF40 (ENSPNYG00000017540)	phkg2 (ENSPNYG00000017491)	ccdc189 (ENSPNYG00000017475)	ENSPNYG00000017427	ENSPNYG00000017413	ube2ia (ENSPNYG00000017397)	kctd5a (ENSPNYG00000017384)	pdpk1b (ENSPNYG00000017347)	tsr3 (ENSPNYG00000017339)	gnptg (ENSPNYG00000017329)	ENSPNYG00000017309	C7orf50 (ENSPNYG00000017298)
Haplochromini_B	ANCESTRAL SPECIES	24	ENSGT00940000164208	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00600000085580	ENSGT00940000165156	ENSGT00940000164729.a.b	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359	ENSGT00390000017838
Zebra mbuna	MODERN SPECIES	1111	GJD3 (ENSMZEG00005009897)	top2a (ENSMZEG00005009940)	ENSMZEG00005010031	ENSMZEG00005010039	med24 (ENSMZEG00005010058)	lyrm1 (ENSMZEG00005011059)	dcun1d3 (ENSMZEG00005011067)	ENSMZEG00005011073	cox6b1 (ENSMZEG00005011113)	ENSMZEG00005011119	luc7l (ENSMZEG00005011133)	ENSMZEG00005011152	slc6a16b (ENSMZEG00005011172)	SLC17A7 (ENSMZEG00005011182)	ENSMZEG00005011202	zgc:91999 (ENSMZEG00005011209) ##22	ENSMZEG00005011222	ENSMZEG00005011252	znf668 (ENSMZEG00005011259)	ENSMZEG00005011264	RNF40 (ENSMZEG00005011271)	phkg2 (ENSMZEG00005011284)	ccdc189 (ENSMZEG00005011294)	ENSMZEG00005011304	ENSMZEG00005011318	ube2ia (ENSMZEG00005011333)	kctd5a (ENSMZEG00005011349)	pdpk1b (ENSMZEG00005011364)	tsr3 (ENSMZEG00005011381)	gnptg (ENSMZEG00005011389)	C7orf50 (ENSMZEG00005011400)
Eastern happy	MODERN SPECIES	20	ENSACLG00000013040	med24 (ENSACLG00000012992)	ENSACLG00000012987	lyrm1 (ENSACLG00000012981)	dcun1d3 (ENSACLG00000012976)	ENSACLG00000012968	cox6b1 (ENSACLG00000012961)	ENSACLG00000012945	luc7l (ENSACLG00000012920)	ENSACLG00000012907	ENSACLG00000012895	slc6a16b (ENSACLG00000012877)	SLC17A7 (ENSACLG00000012854)	ENSACLG00000012851	ENSACLG00000012749	zgc:91999 (ENSACLG00000012726) ##22	ENSACLG00000012720	znf668 (ENSACLG00000012717)	ENSACLG00000012712	RNF40 (ENSACLG00000012497)	phkg2 (ENSACLG00000012452)	ENSACLG00000012412	ENSACLG00000012382	ube2ia (ENSACLG00000012338)	kctd5a (ENSACLG00000012250)	pdpk1b (ENSACLG00000012187)	tsr3 (ENSACLG00000012171)	gnptg (ENSACLG00000012110)	ENSACLG00000012093	C7orf50 (ENSACLG00000012070)	H3-3B (ENSACLG00000012035)
Burton s mouthbrooder	MODERN SPECIES	538	ENSHBUG00000004207	ENSHBUG00000004223	med24 (ENSHBUG00000004321)	ENSHBUG00000004344	lyrm1 (ENSHBUG00000004361)	dcun1d3 (ENSHBUG00000004369)	ENSHBUG00000004400	cox6b1 (ENSHBUG00000004551)	ENSHBUG00000004570	luc7l (ENSHBUG00000004615)	ENSHBUG00000004639	slc6a16b (ENSHBUG00000004672)	SLC17A7 (ENSHBUG00000004740)	ENSHBUG00000004767	ENSHBUG00000004778	zgc:91999 (ENSHBUG00000004796) ##22	ENSHBUG00000004819	ENSHBUG00000004826	znf668 (ENSHBUG00000004828)	ENSHBUG00000004840	RNF40 (ENSHBUG00000004869)	phkg2 (ENSHBUG00000004902)	ccdc189 (ENSHBUG00000004923)	ENSHBUG00000004937	ENSHBUG00000004945	ube2ia (ENSHBUG00000004965)	kctd5a (ENSHBUG00000004977)	pdpk1b (ENSHBUG00000005017)	tsr3 (ENSHBUG00000005030)	gnptg (ENSHBUG00000005075)	ENSHBUG00000005087
Lyretail cichlid	MODERN SPECIES	366	ENSNBRG00000022169	ENSNBRG00000022189	ENSNBRG00000022201	ENSNBRG00000022212	med24 (ENSNBRG00000022224)	ENSNBRG00000022271	lyrm1 (ENSNBRG00000022283)	dcun1d3 (ENSNBRG00000022293)	KATNIP (ENSNBRG00000022311)	cox6b1 (ENSNBRG00000022350)	ENSNBRG00000022390	luc7l (ENSNBRG00000022409)	slc6a16b (ENSNBRG00000022426)	SLC17A7 (ENSNBRG00000022447)	ENSNBRG00000022462	zgc:91999 (ENSNBRG00000022476) ##22	ENSNBRG00000022507	ENSNBRG00000022520	znf668 (ENSNBRG00000022527)	ENSNBRG00000022534	RNF40 (ENSNBRG00000022573)	phkg2 (ENSNBRG00000022660)	ENSNBRG00000022678	ENSNBRG00000022699	ube2ia (ENSNBRG00000022710)	kctd5a (ENSNBRG00000022719)	pdpk1b (ENSNBRG00000022729)	tsr3 (ENSNBRG00000022755)	gnptg (ENSNBRG00000022762)	ENSNBRG00000022770	ENSNBRG00000022775
Nile tilapia	MODERN SPECIES	20	ENSONIG00000021204	ENSONIG00000040074	med24 (ENSONIG00000019926)	lyrm1 (ENSONIG00000030480)	dcun1d3 (ENSONIG00000019930)	ENSONIG00000019931	cox6b1 (ENSONIG00000019934)	ENSONIG00000019936	luc7l (ENSONIG00000019938)	ENSONIG00000019939	slc6a16b (ENSONIG00000019941)	SLC17A7 (ENSONIG00000019942)	ENSONIG00000027460	ENSONIG00000036507	ENSONIG00000028603	zgc:91999 (ENSONIG00000019946) ##22	ENSONIG00000021206	znf668 (ENSONIG00000021207)	ENSONIG00000033141	RNF40 (ENSONIG00000019949)	phkg2 (ENSONIG00000019951)	ENSONIG00000019955	ENSONIG00000019956	ube2i (ENSONIG00000036927)	kctd5 (ENSONIG00000040621)	pdpk1b (ENSONIG00000019961)	tsr3 (ENSONIG00000019966)	gnptg (ENSONIG00000019968)	ENSONIG00000034548	ENSONIG00000021208	lg8h7orf50 (ENSONIG00000034151)
Midas cichlid	MODERN SPECIES	194	ENSACIG00000000862	ENSACIG00000000841	ENSACIG00000000829	ENSACIG00000000817	med24 (ENSACIG00000000740)	lyrm1 (ENSACIG00000000669)	dcun1d3 (ENSACIG00000000658)	ENSACIG00000000626	cox6b1 (ENSACIG00000000613)	ENSACIG00000000588	luc7l (ENSACIG00000000501)	ENSACIG00000000446	slc6a16b (ENSACIG00000000396)	SLC17A7 (ENSACIG00000000354)	ENSACIG00000000303	zgc:91999 (ENSACIG00000000155) ##22	znf668 (ENSACIG00000023080)	ENSACIG00000023049	RNF40 (ENSACIG00000023016)	phkg2 (ENSACIG00000023005)	ENSACIG00000022991	ENSACIG00000022973	ube2ia (ENSACIG00000022962)	kctd5a (ENSACIG00000022933)	pdpk1b (ENSACIG00000022875)	tsr3 (ENSACIG00000022858)	gnptg (ENSACIG00000022849)	ENSACIG00000022840	UQCC4 (ENSACIG00000022836)	ENSACIG00000022822	ENSACIG00000022816
Pomacentridae	ANCESTRAL SPECIES	13	ENSGT00940000164208	ENSGT00390000017328.a.b	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00940000165156	ENSGT00940000164729.a.b	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359	ENSGT00390000017838	ENSGT00510000049652
Pomacentridae_A	ANCESTRAL SPECIES	11	ENSGT00390000017328.a.b	ENSGT00390000016438.fb	ENSGT00390000016438.gb.b	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00940000165156	ENSGT00940000164729.a.b	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359	ENSGT00390000017838	ENSGT00510000049652
Amphiprion	ANCESTRAL SPECIES	28	ENSGT00940000164208	ENSGT00390000017328.a.b	ENSGT00390000016438.fb	ENSGT00390000016438.gb.a	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.b	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00940000165156	ENSGT00940000164729.a.b	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359	ENSGT00390000017838	ENSGT00390000006068
Clown anemonefish	MODERN SPECIES	2228							dcun1d3 (ENSAOCG00000004088)	KATNIP (ENSAOCG00000004075)	cox6b1 (ENSAOCG00000004043)	ENSAOCG00000000124	luc7l (ENSAOCG00000024266)	ENSAOCG00000024244	slc6a16b (ENSAOCG00000024219)	SLC17A7 (ENSAOCG00000024205)	ENSAOCG00000024171	zgc:91999 (ENSAOCG00000024087) ##22
Orange clownfish	MODERN SPECIES	10	top2a (ENSAPEG00000005374)	ENSAPEG00000005391	ENSAPEG00000005405	med24 (ENSAPEG00000005476)	ENSAPEG00000005599	lyrm1 (ENSAPEG00000005661)	dcun1d3 (ENSAPEG00000005693)	KATNIP (ENSAPEG00000005733)	cox6b1 (ENSAPEG00000005788)	ENSAPEG00000005805	luc7l (ENSAPEG00000005836)	ENSAPEG00000005927	slc6a16b (ENSAPEG00000005968)	SLC17A7 (ENSAPEG00000006003)	ENSAPEG00000006134	zgc:91999 (ENSAPEG00000006381) ##22	ENSAPEG00000006392	znf668 (ENSAPEG00000006414)	ENSAPEG00000006427	RNF40 (ENSAPEG00000006447)	phkg2 (ENSAPEG00000006543)	ccdc189 (ENSAPEG00000006570)	ENSAPEG00000006596	ENSAPEG00000006603	ube2ia (ENSAPEG00000006614)	kctd5a (ENSAPEG00000006636)	pdpk1b (ENSAPEG00000006656)	tsr3 (ENSAPEG00000006710)	gnptg (ENSAPEG00000006724)	ENSAPEG00000006739	ENSAPEG00000006749
Spiny chromis	MODERN SPECIES	92														ENSAPOG00000019828	SHANK1 (ENSAPOG00000020081)	zgc:91999 (ENSAPOG00000020130) ##22	ENSAPOG00000020140	znf668 (ENSAPOG00000020145)	ENSAPOG00000020151	RNF40 (ENSAPOG00000020241)	phkg2 (ENSAPOG00000020291)	ccdc189 (ENSAPOG00000020297)	ENSAPOG00000020304	ENSAPOG00000020311	ube2ia (ENSAPOG00000000709)	kctd5a (ENSAPOG00000020363)	pdpk1b (ENSAPOG00000020451)	tsr3 (ENSAPOG00000020463)	ENSAPOG00000020477	ENSAPOG00000020489	ENSAPOG00000020495
Bicolor damselfish	MODERN SPECIES	2084				ENSSPAG00000012145	lyrm1 (ENSSPAG00000012096)	dcun1d3 (ENSSPAG00000012079)	KATNIP (ENSSPAG00000012040)	cox6b1 (ENSSPAG00000012023)	ENSSPAG00000011984	luc7l (ENSSPAG00000011962)	ENSSPAG00000011939	slc6a16b (ENSSPAG00000011921)	SLC17A7 (ENSSPAG00000011906)	ENSSPAG00000011875	SHANK1 (ENSSPAG00000011819)	zgc:91999 (ENSSPAG00000011777) ##22	ENSSPAG00000011737
Pinecone sodierfish	MODERN SPECIES	10	top2a (ENSMMDG00005015774)	ENSMMDG00005015680	ENSMMDG00005015676	med24 (ENSMMDG00005015597)	lyrm1 (ENSMMDG00005015579)	dcun1d3 (ENSMMDG00005015577)	KATNIP (ENSMMDG00005015362)	cox6b1 (ENSMMDG00005015357)	ENSMMDG00005015356	luc7l (ENSMMDG00005015351)	ENSMMDG00005015346	slc6a16b (ENSMMDG00005015288)	SLC17A7 (ENSMMDG00005015264)	ENSMMDG00005015259	SHANK1 (ENSMMDG00005015247)	zgc:91999 (ENSMMDG00005014950) ##22	ENSMMDG00005014946	znf668 (ENSMMDG00005014942)	ENSMMDG00005014941	ENSMMDG00005014939	RNF40 (ENSMMDG00005014822)	phkg2 (ENSMMDG00005014791)	ENSMMDG00005014776	ube2ia (ENSMMDG00005014765)	kctd5a (ENSMMDG00005014763)	pdpk1b (ENSMMDG00005013281)	tsr3 (ENSMMDG00005013258)	gnptg (ENSMMDG00005013254)	ENSMMDG00005013251	ENSMMDG00005013235	ENSMMDG00005013233
Protacanthopterygii	ANCESTRAL SPECIES	54	ENSGT00390000016438	ENSGT01030000234586.A.a.a.a	ENSGT00390000006695.m	ENSGT00940000154959	ENSGT00390000006695.n	ENSGT00940000154944	ENSGT00390000004566	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT00950000183213.a.a.b	ENSGT00940000158125.a	ENSGT00940000163157.a	ENSGT00940000159110.a.j	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b	ENSGT00950000182973.b.b.d ##22	ENSGT00940000168122	ENSGT00600000085580	ENSGT00940000165156	ENSGT00940000164729.a.b	ENSGT00650000094874	ENSGT00390000002866.a	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a.e	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	23	ENSGT00390000016438.kb	ENSGT00390000016438.jb.b	ENSGT01030000234586.A.a.a.a.c	ENSGT00940000154959	ENSGT00390000006695.n	ENSGT00940000154944.w	ENSGT00390000004566.e	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT00950000183213.a.a.b.d	ENSGT00940000158125.a.h	ENSGT00940000163157.a.b	ENSGT00940000159110.a.j.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b.b	ENSGT00950000182973.b.b.d.e ##22	ENSGT00940000168122	ENSGT00600000085580	ENSGT00940000165156	ENSGT00940000164729.a.b.d	ENSGT00650000094874	ENSGT00390000002866.a.g	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a.e.a	ENSGT00940000160374.q.a.b.a	ENSGT00940000160374.r	ENSGT00940000155267.y.a	ENSGT00390000014665
Huchen	MODERN SPECIES	15	ENSHHUG00000042126	ENSHHUG00000042133	ENSHHUG00000042139	DNAH3 (ENSHHUG00000042140)	lyrm1 (ENSHHUG00000042215)	dcun1d3 (ENSHHUG00000042234)	KATNIP (ENSHHUG00000042246)	cox6b1 (ENSHHUG00000042281)	ENSHHUG00000042298	luc7l (ENSHHUG00000042315)	ENSHHUG00000042326	slc6a16b (ENSHHUG00000042336)	SLC17A7 (ENSHHUG00000042363)	ENSHHUG00000042668	ENSHHUG00000042673	ENSHHUG00000042678 ##22	ENSHHUG00000042689	ENSHHUG00000042704	znf668 (ENSHHUG00000042710)	ENSHHUG00000042717	RNF40 (ENSHHUG00000042722)	phkg2 (ENSHHUG00000042737)	ccdc189 (ENSHHUG00000042777)	ENSHHUG00000042790	ENSHHUG00000042801	ENSHHUG00000042807	ENSHHUG00000042901	pdpk1b (ENSHHUG00000042909)	tsr3 (ENSHHUG00000042929)	gnptg (ENSHHUG00000042934)	C7orf50 (ENSHHUG00000042959)
Salmoninae_a	ANCESTRAL SPECIES	17	ENSGT00390000017328.a.b	ENSGT00390000016438.jb.b	ENSGT01030000234586.A.a.a.a.c	ENSGT00940000154959	ENSGT00390000006695.n	ENSGT00940000154944.w	ENSGT00390000004566.e	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT00950000183213.a.a.b.d	ENSGT00940000158125.a.h	ENSGT00940000163157.a.b	ENSGT00940000159110.a.j.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b.b	ENSGT00950000182973.b.b.d.e ##22	ENSGT00940000168122	ENSGT00600000085580	ENSGT00940000165156	ENSGT00940000164729.a.b.d	ENSGT00650000094874	ENSGT00390000002866.a.g	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a.e.a	ENSGT00940000160374.r	ENSGT00940000155267.y.a	ENSGT00390000014665	ENSGT00510000048359
Salmo	ANCESTRAL SPECIES	3	ENSGT00390000016438.kb	ENSGT00390000016438.jb.b	ENSGT01030000234586.A.a.a.a.c	ENSGT00940000154959	ENSGT00390000006695.n	ENSGT00940000154944.w	ENSGT00390000004566.e	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT00950000183213.a.a.b.d	ENSGT00940000158125.a.h	ENSGT00940000163157.a.b	ENSGT00940000159110.a.j.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b.b	ENSGT00950000182973.b.b.d.e ##22	ENSGT00940000168122	ENSGT00600000085580	ENSGT00940000165156	ENSGT00940000164729.a.b.d	ENSGT00650000094874	ENSGT00390000002866.a.g	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a.e.a	ENSGT00940000160374.r	ENSGT00940000155267.y.a	ENSGT00390000014665	ENSGT00510000048359
Atlantic salmon	MODERN SPECIES	10	ENSSSAG00000087403	ENSSSAG00000114148	ENSSSAG00000112600	ENSSSAG00000120716	ENSSSAG00000071863	lyrm1 (ENSSSAG00000072172)	ENSSSAG00000072182	cox6b1 (ENSSSAG00000095913)	fam234a (ENSSSAG00000072214)	luc7l (ENSSSAG00000072219)	ENSSSAG00000072225	ENSSSAG00000054904	ENSSSAG00000072381	ENSSSAG00000074616	ENSSSAG00000106489	ENSSSAG00000074642 ##22	ENSSSAG00000100454	znf668 (ENSSSAG00000074656)	ENSSSAG00000043840	ENSSSAG00000043853	rnf40 (ENSSSAG00000044074)	ENSSSAG00000054338	ENSSSAG00000054440	ENSSSAG00000109970	ENSSSAG00000087751	UBC9 (ENSSSAG00000054459)	ENSSSAG00000094096	ENSSSAG00000054521	gnptg (ENSSSAG00000056057)	tsr3 (ENSSSAG00000056047)	ENSSSAG00000056848
River trout	MODERN SPECIES	11	ENSSTUG00000010237	ENSSTUG00000010244	ENSSTUG00000010256	DNAH3 (ENSSTUG00000010324)	lyrm1 (ENSSTUG00000012715)	dcun1d3 (ENSSTUG00000012721)	KATNIP (ENSSTUG00000012729)	cox6b1 (ENSSTUG00000012771)	ENSSTUG00000012788	luc7l (ENSSTUG00000012804)	ENSSTUG00000012828	slc6a16b (ENSSTUG00000012847)	SLC17A7 (ENSSTUG00000012911)	ENSSTUG00000013609	SHANK1 (ENSSTUG00000013631)	ENSSTUG00000013660 ##22	ENSSTUG00000013670	ENSSTUG00000013687	znf668 (ENSSTUG00000013695)	ENSSTUG00000013702	ENSSTUG00000013714	RNF40 (ENSSTUG00000013764)	phkg2 (ENSSTUG00000013973)	ccdc189 (ENSSTUG00000014100)	ENSSTUG00000014118	ENSSTUG00000014156	ENSSTUG00000014167	ENSSTUG00000014189	pdpk1b (ENSSTUG00000014241)	tsr3 (ENSSTUG00000015423)	gnptg (ENSSTUG00000015462)
Oncorhynchus	ANCESTRAL SPECIES	26	ENSGT00390000016438.jb.b	ENSGT01030000234586.A.a.a.a.c	ENSGT00940000154959	ENSGT00390000006695.n	ENSGT00940000154944.w	ENSGT00390000004566.e	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT00950000183213.a.a.b.d	ENSGT00940000158125.a.h	ENSGT00940000163157.a.b	ENSGT00940000159110.a.j.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b.a	ENSGT00940000153561.b.a.b.a.b.b	ENSGT00950000182973.b.b.d.e ##22	ENSGT00940000168122	ENSGT00600000085580	ENSGT00940000165156	ENSGT00940000164729.a.b.d	ENSGT00650000094874	ENSGT00390000002866.a.g	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a.e.a	ENSGT00940000160374.r	ENSGT00940000155267.y.a	ENSGT00390000014665	ENSGT00510000048359
Oncorhynchus_a	ANCESTRAL SPECIES	21	ENSGT00390000017328.a.b	ENSGT00390000016438.jb.b	ENSGT01030000234586.A.a.a.a.c	ENSGT00940000154959	ENSGT00390000006695.n	ENSGT00940000154944.w	ENSGT00390000004566.e	ENSGT00940000164148.a.b	ENSGT00530000063694.a	ENSGT00950000183213.a.a.b.d	ENSGT00940000158125.a.h	ENSGT00940000163157.a.b	ENSGT00940000159110.a.j.b	ENSGT00440000036191	ENSGT00940000153561.b.a.b.a.b.a	ENSGT00950000182973.b.b.d.e ##22	ENSGT00940000168122	ENSGT00600000085580	ENSGT00940000165156	ENSGT00940000164729.a.b.d	ENSGT00650000094874	ENSGT00390000002866.a.g	ENSGT00940000160435	ENSGT00940000154323.a	ENSGT00940000166841	ENSGT00940000167095.A	ENSGT00550000075088.a.a.e.a	ENSGT00940000160374.r	ENSGT00940000155267.y.a	ENSGT00390000014665	ENSGT00510000048359
Chinook salmon	MODERN SPECIES	16	ENSOTSG00005045670	ENSOTSG00005045671	DNAH3 (ENSOTSG00005045679)	lyrm1 (ENSOTSG00005045728)	dcun1d3 (ENSOTSG00005045729)	KATNIP (ENSOTSG00005045732)	ENSOTSG00005045735	cox6b1 (ENSOTSG00005045736)	ENSOTSG00005045737	luc7l (ENSOTSG00005045739)	ENSOTSG00005002998	slc6a16b (ENSOTSG00005003010)	SLC17A7 (ENSOTSG00005003621)	ENSOTSG00005004160	ENSOTSG00005004162	zgc:91999 (ENSOTSG00005004164) ##22	ENSOTSG00005004171	znf668 (ENSOTSG00005004177)	ENSOTSG00005004180	ENSOTSG00005004184	RNF40 (ENSOTSG00005004216)	phkg2 (ENSOTSG00005004668)	ccdc189 (ENSOTSG00005004989)	ENSOTSG00005004994	ENSOTSG00005004998	ENSOTSG00005005013	ENSOTSG00005005016	pdpk1b (ENSOTSG00005005023)	tsr3 (ENSOTSG00005005560)	gnptg (ENSOTSG00005005572)	ENSOTSG00005006670
Coho salmon	MODERN SPECIES	12	ENSOKIG00005018179	ENSOKIG00005018242	DNAH3 (ENSOKIG00005018422)	lyrm1 (ENSOKIG00005020475)	dcun1d3 (ENSOKIG00005020499)	KATNIP (ENSOKIG00005020503)	cox6b1 (ENSOKIG00005020508)	ENSOKIG00005020522	luc7l (ENSOKIG00005020539)	ENSOKIG00005020552	slc6a16b (ENSOKIG00005020568)	ENSOKIG00005020604	ENSOKIG00005020606	SLC17A7 (ENSOKIG00005020626)	ENSOKIG00005021264	ENSOKIG00005021272 ##22	ENSOKIG00005021303	ENSOKIG00005021307	ENSOKIG00005021320	znf668 (ENSOKIG00005021326)	ENSOKIG00005021333	ENSOKIG00005021346	RNF40 (ENSOKIG00005021406)	phkg2 (ENSOKIG00005021806)	ccdc189 (ENSOKIG00005022260)	ENSOKIG00005022315	ENSOKIG00005022524	ENSOKIG00005022558	ENSOKIG00005022745	pdpk1b (ENSOKIG00005022926)	tsr3 (ENSOKIG00005023859)
Rainbow trout	MODERN SPECIES	7	ENSOMYG00000017297	ENSOMYG00000071277	ENSOMYG00000017318	ENSOMYG00000017699	ENSOMYG00000020505	dcun1d3 (ENSOMYG00000020509)	ENSOMYG00000020519	cox6b1 (ENSOMYG00000020528)	ENSOMYG00000020538	ENSOMYG00000020570	ENSOMYG00000020579	ENSOMYG00000020630	ENSOMYG00000020688	ENSOMYG00000020698	ENSOMYG00000020704	ENSOMYG00000020717 ##22	ENSOMYG00000020743	ENSOMYG00000020774	znf668 (ENSOMYG00000020784)	ENSOMYG00000020791	ENSOMYG00000020934	ENSOMYG00000021160	ENSOMYG00000021180	ENSOMYG00000021189	ENSOMYG00000069768	ENSOMYG00000021201	ENSOMYG00000021232	ENSOMYG00000021266	ENSOMYG00000060338	pdpk1b (ENSOMYG00000021496)	ENSOMYG00000021906
Salmoninae	ANCESTRAL SPECIES	564	ENSGT00940000155348.B.d.d	ENSGT00940000160643.j.a	ENSGT00940000165576.a.b.f.a.a	ENSGT00940000163149.a.a.b.c.b.b	ENSGT00940000164208.c	ENSGT00390000016438.jb.a	ENSGT01030000234586.A.a.a.a.d	ENSGT00390000006695.m	ENSGT00940000154944.x	ENSGT00390000004566.f	ENSGT00950000183213.a.a.b.c	ENSGT00940000158125.a.g	ENSGT00940000163157.a.a	ENSGT00940000159110.a.j.a	ENSGT00940000153561.b.a.b.a.b.a	ENSGT00950000182973.b.b.d.f ##22
Huchen	MODERN SPECIES	152	ENSHHUG00000046984	ENSHHUG00000046955	ENSHHUG00000046951	med24 (ENSHHUG00000046812)	ENSHHUG00000046803	lyrm1 (ENSHHUG00000046793)	dcun1d3 (ENSHHUG00000046788)	ENSHHUG00000046786	KATNIP (ENSHHUG00000046676)	luc7l (ENSHHUG00000046675)	ENSHHUG00000046673	ENSHHUG00000046665	SLC17A7 (ENSHHUG00000046459)	ENSHHUG00000046452	ENSHHUG00000046448	ENSHHUG00000046444 ##22	ENSHHUG00000046440
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00950000182973.b.b.d.f ##22
Salmo	ANCESTRAL SPECIES																	ENSGT00950000182973.b.b.d.f ##22
Atlantic salmon	MODERN SPECIES	10	ENSSSAG00000066193	ENSSSAG00000055336	ENSSSAG00000055333	ENSSSAG00000055207	ENSSSAG00000110482	lyrm1 (ENSSSAG00000055177)	ENSSSAG00000055169	ENSSSAG00000055144	ENSSSAG00000055128	ENSSSAG00000055104	ENSSSAG00000072237	ENSSSAG00000051442	ENSSSAG00000106070	ENSSSAG00000051354	ENSSSAG00000083553	ENSSSAG00000084683 ##22	ENSSSAG00000051349	ENSSSAG00000043048	ENSSSAG00000042879	ENSSSAG00000054472	ENSSSAG00000042015	ENSSSAG00000086106	ENSSSAG00000046658	ENSSSAG00000090438	wdr24 (ENSSSAG00000046217)	zgc:112496 (ENSSSAG00000046195)	rhbdl1 (ENSSSAG00000056910)	h1-0 (ENSSSAG00000100431)	ENSSSAG00000046130	ENSSSAG00000046117	decr2 (ENSSSAG00000046097)
Northern pike	MODERN SPECIES	4	ENSELUG00000000397	ENSELUG00000011117	med24 (ENSELUG00000011080)	ENSELUG00000010960	DNAH3 (ENSELUG00000001478)	lyrm1 (ENSELUG00000027890)	dcun1d3 (ENSELUG00000010810)	KATNIP (ENSELUG00000010768)	CX6B1 (ENSELUG00000010671)	luc7l (ENSELUG00000010661)	ENSELUG00000010639	slc6a16b (ENSELUG00000010610)	slc17a7a (ENSELUG00000010584)	ENSELUG00000000380	SHANK1 (ENSELUG00000027826)	zgc:91999 (ENSELUG00000010522) ##22	ENSELUG00000010464	ENSELUG00000010432	znf668 (ENSELUG00000010429)	ENSELUG00000010423	ENSELUG00000010400	RNF40 (ENSELUG00000010378)	phkg2 (ENSELUG00000010321)	ccdc189 (ENSELUG00000010298)	ENSELUG00000010264	ENSELUG00000010242	ube2ia (ENSELUG00000031700)	KCTD5 (ENSELUG00000010194)	pdpk1b (ENSELUG00000010174)	tsr3 (ENSELUG00000010103)	gnptg (ENSELUG00000010068)
Osteoglossiformes	ANCESTRAL SPECIES	250					ENSGT00940000158125.b	ENSGT00940000163157.b	ENSGT00940000159110.a	ENSGT00940000155653.a	ENSGT00560000077365	ENSGT00390000018612.a.a.a	ENSGT00390000004452	ENSGT00390000007101.d.a	ENSGT00940000153909.a	ENSGT00940000161700	ENSGT00940000153561.b.a.b.a.a.y	ENSGT00950000182973.b.b.d ##22	ENSGT00940000161770.a	ENSGT00940000160439	ENSGT00940000160261.g	ENSGT00940000160092.B	ENSGT00390000004520	ENSGT00930000151196.b	ENSGT00390000017397	ENSGT00940000158989	ENSGT00940000167404.r	ENSGT00390000001927.b.o	ENSGT01050000244900.a.b.e
Asian bonytongue	MODERN SPECIES	23	ENSSFOG00015008171	ENSSFOG00015025480	dcun1d3 (ENSSFOG00015008246)	eps8l1a (ENSSFOG00015008258)	ENSSFOG00015008283	ENSSFOG00015008308	SLC17A7 (ENSSFOG00015008330)	zgc:55558 (ENSSFOG00015008376)	pold1 (ENSSFOG00015008405)	gys1 (ENSSFOG00015008475)	aspdh (ENSSFOG00015008539)	tmem86b (ENSSFOG00015008581)	hspbp1 (ENSSFOG00015008614)	ENSSFOG00015008664	SHANK1 (ENSSFOG00015008710)	zgc:91999 (ENSSFOG00015032091) ##22	SYT3 (ENSSFOG00015008899)	med25 (ENSSFOG00015008971)	LRRC4B (ENSSFOG00015026761)	mybpc2a (ENSSFOG00015009036)	emc10 (ENSSFOG00015009154)	zgc:195001 (ENSSFOG00015009168)	ENSSFOG00015009189	tbc1d17 (ENSSFOG00015009208)	amdhd2 (ENSSFOG00015027811)	CAPN15 (ENSSFOG00015009309)	JMJD8 (ENSSFOG00015009322)	xpo6 (ENSSFOG00015009347)
Reedfish	MODERN SPECIES	2	ENSECRG00000010057	ENSECRG00000010069	IRF3 (ENSECRG00000010094)	ENSECRG00000010145	ENSECRG00000010245	ENSECRG00000010256	ENSECRG00000010268	ENSECRG00000010294	ENSECRG00000010337	ENSECRG00000010344	ENSECRG00000010352	med25 (ENSECRG00000010359)	LRRC4B (ENSECRG00000010369)	ENSECRG00000010389	ENSECRG00000010451	zgc:91999 (ENSECRG00000010456) ##22	SYT3 (ENSECRG00000010471)	ENSECRG00000010477	ENSECRG00000010482	aspdh (ENSECRG00000014355)	hspbp1 (ENSECRG00000014396)	ENSECRG00000014437	ENSECRG00000014487	emc10 (ENSECRG00000014548)	ENSECRG00000014587	mybpc2a (ENSECRG00000014675)	ENSECRG00000014993	ENSECRG00000015014	ENSECRG00000015054	nucb1 (ENSECRG00000015083)	ENSECRG00000015142
Elephant shark	MODERN SPECIES	2994																ENSCMIG00000004097 ##22
Ciona	ANCESTRAL SPECIES																	ENSGT00950000182973 #22
Ciona savignyi	MODERN SPECIES	180	ENSCSAVG00000003941	ENSCSAVG00000003997	ENSCSAVG00000004360	ENSCSAVG00000004365	ENSCSAVG00000004390	ENSCSAVG00000004393	ENSCSAVG00000004465	ENSCSAVG00000004473	ENSCSAVG00000004475	ENSCSAVG00000004482	ENSCSAVG00000004489	ENSCSAVG00000004498	ENSCSAVG00000004635	ENSCSAVG00000004644	ENSCSAVG00000004653	ENSCSAVG00000004657 #22	ENSCSAVG00000004663	ENSCSAVG00000004669	ENSCSAVG00000004673	ENSCSAVG00000004678	ENSCSAVG00000004693	ENSCSAVG00000004723	ENSCSAVG00000004726	ENSCSAVG00000004730	ENSCSAVG00000004733	ENSCSAVG00000004748	ENSCSAVG00000004751	ENSCSAVG00000004799	ENSCSAVG00000004801	ENSCSAVG00000004823	ENSCSAVG00000004827
Ciona intestinalis	MODERN SPECIES	8	ENSCING00000020231	ENSCING00000018925	ENSCING00000008028	ENSCING00000019563	ENSCING00000013632	ENSCING00000013633	ENSCING00000018837	ENSCING00000022371	ENSCING00000008026	ENSCING00000019949	ENSCING00000020578	ENSCING00000019198	ENSCING00000000696	ENSCING00000008015	ENSCING00000008018	ENSCING00000008003 #22	ENSCING00000013631	ENSCING00000007973	ENSCING00000007977	ENSCING00000007978	ENSCING00000025062	ENSCING00000007981	ENSCING00000020399	ENSCING00000019377	ENSCING00000013628	ENSCING00000022826	ENSCING00000007984	ENSCING00000007985	ENSCING00000019915	ENSCING00000007996	ENSCING00000007998