Clupeocephala	ANCESTRAL SPECIES	3	ENSGT00390000002862.tb	ENSGT00390000002862.ub	ENSGT00940000155953	ENSGT00950000182883.b.a.a	ENSGT00940000159677.a.a	ENSGT00940000159677.a.b	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000010316	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00740000117080	ENSGT00390000016988.a.a.a.a.b	ENSGT00940000156882	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000164537 #29	ENSGT00940000158179.a ##27	ENSGT00390000010672	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33
Euteleosteomorpha	ANCESTRAL SPECIES	6	ENSGT01050000244848.C.a	ENSGT00940000159262	ENSGT00390000002862.tb	ENSGT00390000002862.ub	ENSGT00940000155953	ENSGT00950000182883.b.a.a	ENSGT00940000159677.a.b	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00740000117080	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000164537 #29	ENSGT00940000158179.a ##27	ENSGT00390000010672	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35
Acanthomorphata	ANCESTRAL SPECIES	5	ENSGT00930000151029.i.a #8	ENSGT00940000177459 #9	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT01010000223530.a	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00740000117080	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00970000197261	ENSGT00940000170370	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35
Euacanthomorphacea	ANCESTRAL SPECIES	15	ENSGT00930000151029.i.a #8	ENSGT00940000177459 #9	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT01010000223530.a	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00740000117080	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000154856.A.a.d #36	ENSGT00390000005911 #37
Percomorphaceae	ANCESTRAL SPECIES	34	ENSGT00940000164444.a #7	ENSGT00930000151029.i.a #8	ENSGT00940000177459 #9	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00740000117080	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000154856.A.a.d #36	ENSGT00390000005911 #37
Percomorphaceae_B	ANCESTRAL SPECIES	17	ENSGT00930000151029.i.a #8	ENSGT00940000177459 #9	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT01010000223530.a	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00740000117080	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT01030000235116 #26	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000177394	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35
Percomorphaceae_C	ANCESTRAL SPECIES	13	ENSGT00940000164444.a #7	ENSGT00930000151029.i.a #8	ENSGT00940000177459 #9	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT01030000235116 #26	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000177394	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000154856.A.a.d #36
Percomorphaceae_D	ANCESTRAL SPECIES	12	ENSGT00940000164444.a #7	ENSGT00930000151029.i.a #8	ENSGT00940000177459 #9	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT01030000235116 #26	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000154856.A.a.d #36	ENSGT00390000005911 #37
Anabantaria	ANCESTRAL SPECIES	14	ENSGT00940000164444.a #7	ENSGT00930000151029.i.a #8	ENSGT00940000177459 #9	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000161051.a.a.a.a.b ##35	ENSGT00940000154856.A.a.d #36	ENSGT00390000005911 #37
Anabantoidei	ANCESTRAL SPECIES	13	ENSGT00940000164444.a #7	ENSGT00930000151029.i.a #8	ENSGT00940000177459 #9	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT01100000263556.a.a.q.d	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000161051.a.a.a.a.b ##35	ENSGT00390000005911 #37	ENSGT00950000182942.a.b
Climbing perch	MODERN SPECIES	12	ENSATEG00000021382 #8	ENSATEG00000021355 #9	ENSATEG00000021258 #10	ENSATEG00000029089 #11	ENSATEG00000021181 #12	ENSATEG00000021164 #13	ENSATEG00000021156 #14	ENSATEG00000028914	ENSATEG00000021143 #16	ENSATEG00000021089 #17	ENSATEG00000021072 #18	ENSATEG00000021031 #19	ENSATEG00000021006 #20	ENSATEG00000020918 #20	ENSATEG00000020870 #21	ENSATEG00000020810 #22	TMEM169 (ENSATEG00000020797) #23	xrcc5 (ENSATEG00000020733) #24	ENSATEG00000020687 #25	MARCHF4 (ENSATEG00000020649) #27	SMARCAL1 (ENSATEG00000020624) #28	nme9 (ENSATEG00000020557) #29	ENSATEG00000029040	zgc:162707 (ENSATEG00000025802) #30	ehhadh (ENSATEG00000020518) #31	tmem41aa (ENSATEG00000020502) #32	igf2bp2a (ENSATEG00000020389) #33	tra2b (ENSATEG00000020354) #34	ENSATEG00000020337 #35	ENSATEG00000020302 ##35	ENSATEG00000020278 #37
Siamese fighting fish	MODERN SPECIES	11	BIN1 (ENSBSLG00000018210)	ihha (ENSBSLG00000018156) #7	snx4 (ENSBSLG00000016902) #8	ARSD (ENSBSLG00000016694) #10	ENSBSLG00000016662 #11	ENSBSLG00000015588 #12	ercc1 (ENSBSLG00000015472) #13	prmt2 (ENSBSLG00000015428) #14	ENSBSLG00000015389	ENSBSLG00000015374 #16	ENSBSLG00000013487 #17	ENSBSLG00000013077 #18	hycc2 (ENSBSLG00000012192) #19	trpm2 (ENSBSLG00000011733) #20	MAP3K13 (ENSBSLG00000011289) #21	PFKL (ENSBSLG00000008466) #22	TMEM169 (ENSBSLG00000008220) #23	xrcc5 (ENSBSLG00000007922) #24	COL6A2 (ENSBSLG00000007732) #25	MARCHF4 (ENSBSLG00000007287) #27	SMARCAL1 (ENSBSLG00000006782) #28	nme9 (ENSBSLG00000006456) #29	zgc:162707 (ENSBSLG00000006279) #30	ehhadh (ENSBSLG00000005946) #31	tmem41aa (ENSBSLG00000005941) #32	igf2bp2a (ENSBSLG00000005124) #33	tra2b (ENSBSLG00000004950) #34	ENSBSLG00000004919 #35	ENSBSLG00000026238 ##35	glb1l (ENSBSLG00000026206)	ANKZF1 (ENSBSLG00000026199) #37
Zig-zag eel	MODERN SPECIES	13	ihha (ENSMAMG00000019587) #7	ENSMAMG00000019607 #8	ENSMAMG00000019630 #9	ENSMAMG00000019642 #10	ENSMAMG00000019648 #11	ENSMAMG00000019670 #12	ENSMAMG00000019693 #13	ENSMAMG00000025846 #14	ENSMAMG00000019704 #15	ENSMAMG00000019714 #16	ENSMAMG00000019732 #17	ENSMAMG00000019834 #18	ENSMAMG00000019843 #19	trpm2 (ENSMAMG00000000410) #20	ENSMAMG00000000542 #21	ENSMAMG00000000621 #22	xrcc5 (ENSMAMG00000000708) #24	ENSMAMG00000000735 #25	ENSMAMG00000000772	ENSMAMG00000000791	ENSMAMG00000000828 #28	nme9 (ENSMAMG00000000849) #29	zgc:162707 (ENSMAMG00000025518) #30	ehhadh (ENSMAMG00000000910) #31	tmem41aa (ENSMAMG00000000927) #32	igf2bp2a (ENSMAMG00000000969) #33	tra2b (ENSMAMG00000001051) #34	ENSMAMG00000001075 #35	ENSMAMG00000001094 #36	ENSMAMG00000001160 #37	glb1l (ENSMAMG00000001126)
Carangaria	ANCESTRAL SPECIES	12	ENSGT00940000164444.a #7	ENSGT00930000151029.i.a #8	ENSGT00940000177459 #9	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT01030000235116 #26	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000154856.A.a.d #36	ENSGT00940000161051.a.a.a.a.b ##35
Carangaria_A	ANCESTRAL SPECIES	11	ENSGT00940000164444.a #7	ENSGT00930000151029.i.a #8	ENSGT00940000177459 #9	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT01030000235116 #26	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000161051.a.a.a.a.b ##35	ENSGT00390000005911 #37
Barramundi perch	MODERN SPECIES	153	BIN1 (ENSLCAG00010020355)	ihha (ENSLCAG00010020398) #7	ARSD (ENSLCAG00010020404) #10	ENSLCAG00010020409 ##11	ENSLCAG00010020411 #11	ENSLCAG00010020418 #12	ercc1 (ENSLCAG00010020420) #13	prmt2 (ENSLCAG00010020424) #14	ENSLCAG00010020426 #15	ENSLCAG00010020428 #16	DIP2A (ENSLCAG00010020909) #17	ENSLCAG00010022606 #18	hycc2 (ENSLCAG00010022612) #19	trpm2 (ENSLCAG00010022631) #20	MAP3K13 (ENSLCAG00010022673) #21	PFKL (ENSLCAG00010022730) #22	TMEM169 (ENSLCAG00010022961) #23	ENSLCAG00010022967	srpx (ENSLCAG00010022987)	SYTL5 (ENSLCAG00010022998)	DYNLT3 (ENSLCAG00010023004)	xk (ENSLCAG00010023008)	LANCL3 (ENSLCAG00010023013)	GRPR (ENSLCAG00010023018)	asb11 (ENSLCAG00010023024)	piga (ENSLCAG00010023038)	appb (ENSLCAG00010023089)	gabpa (ENSLCAG00010023176)	CBS (ENSLCAG00010023223)	sik1 (ENSLCAG00010023325)	ankrd10b (ENSLCAG00010023326)
Seriola	ANCESTRAL SPECIES	6	ENSGT00940000164444.a #7	ENSGT00930000151029.i.a #8	ENSGT00940000177459 #9	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT01100000263521.b	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT01030000235116 #26	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000161051.a.a.a.a.b ##35	ENSGT00390000005911 #37
Greater amberjack	MODERN SPECIES	21	ihha (ENSSDUG00000015029) #7	snx4 (ENSSDUG00000015041) #8	ENSSDUG00000015061 #9	ENSSDUG00000015101 #10	ENSSDUG00000015372 #11	ENSSDUG00000015485 #12	ercc1 (ENSSDUG00000016794) #13	prmt2 (ENSSDUG00000016811) #14	ENSSDUG00000016828	ENSSDUG00000016836 #16	DIP2A (ENSSDUG00000016872) #17	ENSSDUG00000017128 #18	hycc2 (ENSSDUG00000017151) #19	trpm2 (ENSSDUG00000017210) #20	MAP3K13 (ENSSDUG00000017262) #21	PFKL (ENSSDUG00000017336) #22	TMEM169 (ENSSDUG00000017381) #23	xrcc5 (ENSSDUG00000017389) #24	COL6A2 (ENSSDUG00000017419) #25	MARCHF4 (ENSSDUG00000017455) #27	SMARCAL1 (ENSSDUG00000017470) #28	nme9 (ENSSDUG00000017498) #29	ENSSDUG00000017536	zgc:162707 (ENSSDUG00000017544) #30	ehhadh (ENSSDUG00000017550) #31	tmem41aa (ENSSDUG00000017558) #32	igf2bp2a (ENSSDUG00000017581) #33	tra2b (ENSSDUG00000017670) #34	ENSSDUG00000017678 #35	ENSSDUG00000017705 ##35	ANKZF1 (ENSSDUG00000017724) #37
Yellowtail amberjack	DUPLICATION
Yellowtail amberjack	DUPLICATION
Yellowtail amberjack	DUPLICATION
Yellowtail amberjack	DUPLICATION
Yellowtail amberjack	MODERN SPECIES	413															ENSSLDG00000010837 #22	ENSSLDG00000010865 #22
Yellowtail amberjack	MODERN SPECIES	413																ENSSLDG00000010837 #22	ENSSLDG00000010865 #22
Yellowtail amberjack	MODERN SPECIES	414																ENSSLDG00000010892 #22
Yellowtail amberjack	MODERN SPECIES	3174	snx4 (ENSSLDG00000008791) #8	ENSSLDG00000008756 #9	ARSD (ENSSLDG00000008448) #10	ENSSLDG00000008351 #11	ENSSLDG00000006718 #12	ercc1 (ENSSLDG00000006393) #13	prmt2 (ENSSLDG00000006377) #14	ENSSLDG00000006359	ENSSLDG00000006340 #16	DIP2A (ENSSLDG00000006259) #17	ENSSLDG00000006228 #18	hycc2 (ENSSLDG00000006118) #19	ENSSLDG00000006079 #20	trpm2 (ENSSLDG00000005925) #20	MAP3K13 (ENSSLDG00000005796) #21	ENSSLDG00000005750 #22
Yellowtail amberjack	MODERN SPECIES	2388																ENSSLDG00000007414 #22	TMEM169 (ENSSLDG00000007402) #23	xrcc5 (ENSSLDG00000007353) #24	ENSSLDG00000007329 #25	ENSSLDG00000007300 #26	MARCHF4 (ENSSLDG00000007291) #27	SMARCAL1 (ENSSLDG00000007224) #28	nme9 (ENSSLDG00000007187) #29	zgc:162707 (ENSSLDG00000007170) #30	ehhadh (ENSSLDG00000007146) #31	tmem41aa (ENSSLDG00000007119) #32	igf2bp2a (ENSSLDG00000007046) #33	tra2b (ENSSLDG00000007005) #34	ENSSLDG00000006947 #35	ENSSLDG00000006914 ##35	ANKZF1 (ENSSLDG00000006877) #37
Pleuronectoidei	ANCESTRAL SPECIES	9	ENSGT00950000182882.A.b.b.e	ENSGT00940000164444.a #7	ENSGT00930000151029.i.a #8	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000154856.A.a.d #36	ENSGT00390000005911 #37	ENSGT00950000182942.a.b
Tongue sole	MODERN SPECIES	7	trappc2 (ENSCSEG00000010105)	RAB9A (ENSCSEG00000010116)	ofd1 (ENSCSEG00000010129)	gpm6bb (ENSCSEG00000010160)	glra2 (ENSCSEG00000010196)	ercc1 (ENSCSEG00000010206) #13	prmt2 (ENSCSEG00000010235) #14	ENSCSEG00000010264	ENSCSEG00000010280 #16	DIP2A (ENSCSEG00000010300) #17	ENSCSEG00000010328 #18	hycc2 (ENSCSEG00000010372) #19	ENSCSEG00000010405 #20	ENSCSEG00000010429 #20	MAP3K13 (ENSCSEG00000010489) #21	pfkl (ENSCSEG00000010541) #22	TMEM169 (ENSCSEG00000010669) #23	xrcc5 (ENSCSEG00000010680) #24	COL6A2 (ENSCSEG00000010759) #25	MARCHF4 (ENSCSEG00000010778) #27	SMARCAL1 (ENSCSEG00000010785) #28	nme9 (ENSCSEG00000010797) #29	rpe (ENSCSEG00000010822)	ackr3a (ENSCSEG00000010829)	ENSCSEG00000010833	ENSCSEG00000010837	vangl1 (ENSCSEG00000010842)	casq2 (ENSCSEG00000010861)	ENSCSEG00000010876	SLC5A3 (ENSCSEG00000010879)	DOP1B (ENSCSEG00000010882)
Turbot	MODERN SPECIES	5	ENSSMAG00000009463	ENSSMAG00000009473	ihha (ENSSMAG00000036550) #7	ENSSMAG00000009633 #8	ENSSMAG00000009689 #10	ENSSMAG00000009712 #11	ENSSMAG00000009725 #12	ENSSMAG00000009766 #13	ENSSMAG00000009806 #16	ENSSMAG00000009841 #17	ENSSMAG00000028111	ENSSMAG00000010005 #18	ENSSMAG00000010020 #19	trpm2 (ENSSMAG00000010126) #20	ENSSMAG00000010180 #21	ENSSMAG00000010223 #22	xrcc5 (ENSSMAG00000010286) #24	ENSSMAG00000010326 #25	MARCHF4 (ENSSMAG00000010382) #27	SMARCAL1 (ENSSMAG00000010427) #28	nme9 (ENSSMAG00000010453) #29	zgc:162707 (ENSSMAG00000010513) #30	ehhadh (ENSSMAG00000010530) #31	tmem41aa (ENSSMAG00000010541) #32	igf2bp2a (ENSSMAG00000010576) #33	tra2b (ENSSMAG00000010614) #34	ENSSMAG00000010627 #35	ENSSMAG00000010640 #36	glb1l (ENSSMAG00000010689)	ENSSMAG00000010739	ENSSMAG00000010851
Eupercaria	ANCESTRAL SPECIES	25	ENSGT00940000164444.a #7	ENSGT00930000151029.i.a #8	ENSGT00940000177459 #9	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000177394	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000154856.A.a.d #36	ENSGT00390000005911 #37
Tetraodontidae	ANCESTRAL SPECIES		ENSGT00950000182882.A.b.b.e	ENSGT00940000164444.a #7	ENSGT00930000151029.i.a #8	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000161051.a.a.a.a.b ##35	ENSGT00390000005911 #37	ENSGT00950000182942.a.b
Fugu	MODERN SPECIES		ENSTRUG00000025638	ENSTRUG00000013330 #11	ENSTRUG00000013178 #12	ENSTRUG00000029899	ENSTRUG00000022269	ercc1 (ENSTRUG00000013151) #13	prmt2 (ENSTRUG00000013061) #14	ENSTRUG00000027529 #15	ENSTRUG00000013037 #16	DIP2A (ENSTRUG00000012903) #17	ENSTRUG00000012711 #18	hycc2 (ENSTRUG00000012635) #19	ENSTRUG00000023328	trpm2 (ENSTRUG00000012200) #20	MAP3K13 (ENSTRUG00000012102) #21	PFKL (ENSTRUG00000011575) #22	TMEM169 (ENSTRUG00000011553) #23	xrcc5 (ENSTRUG00000011292) #24	COL6A2 (ENSTRUG00000010965) #25	MARCHF4 (ENSTRUG00000010920) #27	SMARCAL1 (ENSTRUG00000010701) #28	nme9 (ENSTRUG00000010490) #29	zgc:162707 (ENSTRUG00000027774) #30	ehhadh (ENSTRUG00000010383) #31	tmem41aa (ENSTRUG00000010355) #32	igf2bp2a (ENSTRUG00000009908) #33	ENSTRUG00000020345 #35	fgc6ast2 (ENSTRUG00000009748) ##35	ANKZF1 (ENSTRUG00000009630) #37	glb1l (ENSTRUG00000009251)	ENSTRUG00000008967
Tetraodon	MODERN SPECIES	13	TMEM198 (ENSTNIG00000016447)	BIN1 (ENSTNIG00000016448)	ihha (ENSTNIG00000016449) #7	snx4 (ENSTNIG00000016450) #8	ARSD (ENSTNIG00000016451) #10	ENSTNIG00000016452 #11	ENSTNIG00000016453 #12	ercc1 (ENSTNIG00000016454) #13	prmt2 (ENSTNIG00000016455) #14	ENSTNIG00000016456 #16	DIP2A (ENSTNIG00000016457) #17	ENSTNIG00000016458 #18	hycc2 (ENSTNIG00000016459) #19	trpm2 (ENSTNIG00000016460) #20	MAP3K13 (ENSTNIG00000016461) #21	PFKL (ENSTNIG00000016462) #22	TMEM169 (ENSTNIG00000016463) #23	xrcc5 (ENSTNIG00000016464) #24	COL6A2 (ENSTNIG00000016465) #25	MARCHF4 (ENSTNIG00000016466) #27	SMARCAL1 (ENSTNIG00000016467) #28	nme9 (ENSTNIG00000016468) #29	zgc:162707 (ENSTNIG00000016469) #30	ehhadh (ENSTNIG00000016470) #31	tmem41aa (ENSTNIG00000016471) #32	igf2bp2a (ENSTNIG00000016472) #33	tra2b (ENSTNIG00000000790) #34	ENSTNIG00000016473 #35	ENSTNIG00000016474 ##35	ANKZF1 (ENSTNIG00000016475) #37	glb1l (ENSTNIG00000016476)
Eupecaria_A	ANCESTRAL SPECIES	24	ENSGT00940000164444.a #7	ENSGT00930000151029.i.a #8	ENSGT00940000177459 #9	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000177394	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000154856.A.a.d #36	ENSGT00390000005911 #37
Ballan wrasse	MODERN SPECIES	387				prmt2 (ENSLBEG00000001807) #14	ENSLBEG00000001858 #15	ENSLBEG00000001880 #16	DIP2A (ENSLBEG00000002017) #17	ENSLBEG00000002132 #18	hycc2 (ENSLBEG00000002161) #19	trpm2 (ENSLBEG00000002282) #20	ENSLBEG00000002645 #20	ENSLBEG00000002693 #20	ENSLBEG00000002747 #20	ENSLBEG00000003014 #20	MAP3K13 (ENSLBEG00000003152) #21	PFKL (ENSLBEG00000003240) #22	TMEM169 (ENSLBEG00000003297) #23	xrcc5 (ENSLBEG00000003316) #24	COL6A2 (ENSLBEG00000003366) #25	MARCHF4 (ENSLBEG00000003451) #27	SMARCAL1 (ENSLBEG00000003493) #28	ENSLBEG00000003548	nme9 (ENSLBEG00000003566) #29	zgc:162707 (ENSLBEG00000003609) #30	ehhadh (ENSLBEG00000003623) #31	tmem41aa (ENSLBEG00000003655) #32	igf2bp2a (ENSLBEG00000003710) #33	ENSLBEG00000003842
Eupecaria_B	ANCESTRAL SPECIES	24	ENSGT00940000164444.a #7	ENSGT00930000151029.i.a #8	ENSGT00940000177459 #9	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000154856.A.a.d #36	ENSGT00390000005911 #37	ENSGT00950000182942.a.b
Perciformes	ANCESTRAL SPECIES	23	ENSGT00950000182882.A.b.b.e	ENSGT00940000164444.a #7	ENSGT00930000151029.i.a #8	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000154856.A.a.d #36	ENSGT00390000005911 #37	ENSGT00950000182942.a.b
Cottioidei	ANCESTRAL SPECIES	14	ENSGT00950000182882.A.b.b.e	ENSGT00940000164444.a #7	ENSGT00930000151029.i.a #8	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000161051.a.a.a.a.b ##35	ENSGT00390000005911 #37	ENSGT00950000182942.a.b
Lumpfish	MODERN SPECIES	13	BIN1 (ENSCLMG00005022301)	ihha (ENSCLMG00005022296) #7	snx4 (ENSCLMG00005022249) #8	ARSD (ENSCLMG00005022248) #10	ENSCLMG00005022247 #11	ENSCLMG00005022246 #12	ercc1 (ENSCLMG00005022245) #13	ENSCLMG00005022244 #14	ENSCLMG00005022243 #15	ENSCLMG00005022242 #16	DIP2A (ENSCLMG00005020925) #17	ENSCLMG00005020839 #18	hycc2 (ENSCLMG00005020836) #19	trpm2 (ENSCLMG00005020832) #20	MAP3K13 (ENSCLMG00005020572) #21	PFKL (ENSCLMG00005020466) #22	TMEM169 (ENSCLMG00005020464) #23	xrcc5 (ENSCLMG00005020365) #24	COL6A2 (ENSCLMG00005020111) #25	MARCHF4 (ENSCLMG00005020098) #27	SMARCAL1 (ENSCLMG00005020081) #28	ENSCLMG00005020079 #29	nme9 (ENSCLMG00005020077) #29	zgc:162707 (ENSCLMG00005020075) #30	ehhadh (ENSCLMG00005020073) #31	tmem41aa (ENSCLMG00005020072) #32	igf2bp2a (ENSCLMG00005020011) #33	tra2b (ENSCLMG00005019973) #34	ENSCLMG00005019965 #35	ENSCLMG00005019962 ##35	ANKZF1 (ENSCLMG00005019959) #37
Stickleback	MODERN SPECIES	16	ENSGACG00000006329	ARSD (ENSGACG00000006325) #10	ENSGACG00000006317 #11	ENSGACG00000006314 #12	ENSGACG00000006312	ercc1 (ENSGACG00000006301) #13	prmt2 (ENSGACG00000006286) #14	ENSGACG00000006283	ENSGACG00000006275 #16	DIP2A (ENSGACG00000006240) #17	ENSGACG00000006235 #18	hycc2 (ENSGACG00000006226) #19	trpm2 (ENSGACG00000006218) #20	trpm2 (ENSGACG00000006203) #20	MAP3K13 (ENSGACG00000006196) #21	PFKL (ENSGACG00000006173) #22	TMEM169 (ENSGACG00000006165) #23	xrcc5 (ENSGACG00000006130) #24	COL6A2 (ENSGACG00000006089) #25	MARCHF4 (ENSGACG00000006082) #27	SMARCAL1 (ENSGACG00000006073) #28	nme9 (ENSGACG00000006066) #29	zgc:162707 (ENSGACG00000006064) #30	ehhadh (ENSGACG00000006057) #31	tmem41aa (ENSGACG00000006043) #32	igf2bp2a (ENSGACG00000005991) #33	tra2b (ENSGACG00000005986) #34	ENSGACG00000005978 #35	ENSGACG00000005972 #37	glb1l (ENSGACG00000005954)	ENSGACG00000005949
Perciformes_a	ANCESTRAL SPECIES	23	ENSGT00950000182882.A.b.b.e	ENSGT00940000164444.a #7	ENSGT00930000151029.i.a #8	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000154856.A.a.d #36	ENSGT00390000005911 #37	ENSGT00950000182942.a.b
Pike perch	MODERN SPECIES	1	ENSSLUG00000008514 ##11	ENSSLUG00000008503 #12	ercc1 (ENSSLUG00000008493) #13	prmt2 (ENSSLUG00000008483) #14	ENSSLUG00000008475 #15	ENSSLUG00000008464 #16	DIP2A (ENSSLUG00000000757) #17	ENSSLUG00000000142 #18	hycc2 (ENSSLUG00000000104) #19	ENSSLUG00000000087 #20	ENSSLUG00000000083 #20	trpm2 (ENSSLUG00000000073) #20	trpm2 (ENSSLUG00000000054) #20	ENSSLUG00000000050 #20	MAP3K13 (ENSSLUG00000023747) #21	PFKL (ENSSLUG00000023509) #22	TMEM169 (ENSSLUG00000023466) #23	xrcc5 (ENSSLUG00000023452) #24	ENSSLUG00000023446 #25	MARCHF4 (ENSSLUG00000023443) #27	SMARCAL1 (ENSSLUG00000023356) #28	nme9 (ENSSLUG00000023329) #29	ENSSLUG00000023325	zgc:162707 (ENSSLUG00000023322) #30	ehhadh (ENSSLUG00000023319) #31	tmem41aa (ENSSLUG00000023315) #32	igf2bp2a (ENSSLUG00000023280) #33	tra2b (ENSSLUG00000023261) #34	ENSSLUG00000023250 #35	ENSSLUG00000023243 #36	ANKZF1 (ENSSLUG00000023223) #37
Channel bull blenny	MODERN SPECIES	13	ube2al (ENSCGOG00000020073)	ankrd10b (ENSCGOG00000020066)	sik1 (ENSCGOG00000019947)	u2af1 (ENSCGOG00000019940)	gabpa (ENSCGOG00000019802)	appb (ENSCGOG00000019644)	piga (ENSCGOG00000019638)	asb11 (ENSCGOG00000019636)	GRPR (ENSCGOG00000019633)	xk (ENSCGOG00000019630)	DYNLT3 (ENSCGOG00000019627)	SYTL5 (ENSCGOG00000019557)	srpx (ENSCGOG00000019551)	ENSCGOG00000019549	ENSCGOG00000019548	PFKL (ENSCGOG00000013823) #22	TMEM169 (ENSCGOG00000013665) #23	xrcc5 (ENSCGOG00000013112) #24	COL6A2 (ENSCGOG00000024729) #25	MARCHF4 (ENSCGOG00000024728) #27	SMARCAL1 (ENSCGOG00000024727) #28	nme9 (ENSCGOG00000024726) #29	zgc:162707 (ENSCGOG00000024725) #30	ehhadh (ENSCGOG00000024724) #31	tmem41aa (ENSCGOG00000024723) #32	igf2bp2a (ENSCGOG00000024722) #33	tra2b (ENSCGOG00000024721) #34	ENSCGOG00000024720 #35	ENSCGOG00000024719 #36	ANKZF1 (ENSCGOG00000024717) #37	glb1l (ENSCGOG00000024716)
Eupecaria_C	ANCESTRAL SPECIES	24	ENSGT00940000164444.a #7	ENSGT00930000151029.i.a #8	ENSGT00940000177459 #9	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000161051.a.a.a.a.b ##35	ENSGT00940000154856.A.a.d #36	ENSGT00390000005911 #37
Gilthead seabream	MODERN SPECIES	23	ENSSAUG00010027623 #9	ARSD (ENSSAUG00010027621) #10	ENSSAUG00010027618 #11	ENSSAUG00010027617 #12	ercc1 (ENSSAUG00010027616) #13	prmt2 (ENSSAUG00010027615) #14	ENSSAUG00010027614 #15	ENSSAUG00010027613 #16	ENSSAUG00010027612 #16	ENSSAUG00010027611 #16	DIP2A (ENSSAUG00010027610) #17	ENSSAUG00010027609 #18	hycc2 (ENSSAUG00010027608) #19	trpm2 (ENSSAUG00010027607) #20	MAP3K13 (ENSSAUG00010027605) #21	PFKL (ENSSAUG00010027515) #22	TMEM169 (ENSSAUG00010027458) #23	xrcc5 (ENSSAUG00010027408) #24	ENSSAUG00010027394 #25	MARCHF4 (ENSSAUG00010027393) #27	SMARCAL1 (ENSSAUG00010027379) #28	nme9 (ENSSAUG00010027377) #29	zgc:162707 (ENSSAUG00010027376) #30	ehhadh (ENSSAUG00010027375) #31	tmem41aa (ENSSAUG00010027374) #32	igf2bp2a (ENSSAUG00010027330) #33	tra2b (ENSSAUG00010027319) #34	ENSSAUG00010027315 #35	ENSSAUG00010027313 #36	ANKZF1 (ENSSAUG00010027309) #37	glb1l (ENSSAUG00010027170)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	24	ENSGT00940000164444.a #7	ENSGT00930000151029.i.a #8	ENSGT00940000177459 #9	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000161051.a.a.a.a.b ##35	ENSGT00390000005911 #37	ENSGT00950000182942.a.b
European seabass	MODERN SPECIES	5	ENSDLAG00005010771	ihha (ENSDLAG00005033424) #7	ENSDLAG00005011314 #8	ENSDLAG00005011575 #10	ENSDLAG00005011609 #11	ENSDLAG00005031289 #12	ENSDLAG00005011660 #13	ENSDLAG00005032364 #14	ENSDLAG00005011731 #15	ENSDLAG00005031857 #16	ENSDLAG00005011798 #17	ENSDLAG00005013519 #19	ENSDLAG00005013492 #18	trpm2 (ENSDLAG00005014086) #20	ENSDLAG00005014136 #21	ENSDLAG00005014466 #22	ENSDLAG00005018228 #23	ENSDLAG00005019485 #25	MARCHF4 (ENSDLAG00005019516) #27	SMARCAL1 (ENSDLAG00005019533) #28	nme9 (ENSDLAG00005019963) #29	ehhadh (ENSDLAG00005020031) #31	tmem41aa (ENSDLAG00005027741) #32	igf2bp2a (ENSDLAG00005020121) #33	tra2b (ENSDLAG00005021470) #34	ENSDLAG00005000115 #35	ENSDLAG00005000133 ##35	ENSDLAG00005000283	ENSDLAG00005000671	ENSDLAG00005030476	ENSDLAG00005030680
Large yellow croaker	MODERN SPECIES	490	ihha (ENSLCRG00005021917) #7	snx4 (ENSLCRG00005021921) #8	ENSLCRG00005021966 #9	ARSD (ENSLCRG00005021977) #10	ENSLCRG00005022015 #11	ENSLCRG00005000815 #12	ercc1 (ENSLCRG00005000836) #13	prmt2 (ENSLCRG00005000855) #14	ENSLCRG00005000869	ENSLCRG00005000879 #16	DIP2A (ENSLCRG00005000968) #17	ENSLCRG00005003528 #18	hycc2 (ENSLCRG00005003539) #19	trpm2 (ENSLCRG00005003855) #20	MAP3K13 (ENSLCRG00005006646) #21	PFKL (ENSLCRG00005007069) #22	TMEM169 (ENSLCRG00005007803) #23	TMEM169 (ENSLCRG00005007806) #23	xrcc5 (ENSLCRG00005007819) #24	COL6A2 (ENSLCRG00005009580) #25	SMARCAL1 (ENSLCRG00005009591) #28	nme9 (ENSLCRG00005009804) #29	zgc:162707 (ENSLCRG00005009805) #30	ehhadh (ENSLCRG00005009806) #31	tmem41aa (ENSLCRG00005009808) #32	igf2bp2a (ENSLCRG00005009811) #33	ENSLCRG00005010177	tra2b (ENSLCRG00005010179) #34	ENSLCRG00005010183 #35	ENSLCRG00005010188 ##35	ANKZF1 (ENSLCRG00005010191) #37
Ovalentaria	ANCESTRAL SPECIES	14	ENSGT00930000151029.i.a #8	ENSGT00940000177459 #9	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT01010000223530.a	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00740000117080	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT01030000235116 #26	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000177394	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35
Atherinomorphae	ANCESTRAL SPECIES	13	ENSGT00940000164444.a #7	ENSGT00930000151029.i.a #8	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT01010000223530.a	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00740000117080	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT01030000235116 #26	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000177394	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35
Cyprinodontiformes	ANCESTRAL SPECIES	15	ENSGT00940000164444.a #7	ENSGT00930000151029.i.a #8	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT01010000223530.a	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00740000117080	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT01030000235116 #26	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000177394	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35
Aplocheiloidei	ANCESTRAL SPECIES	6	ENSGT00940000164444.a #7	ENSGT00930000151029.i.a #8	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT01010000223530.a	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000154856.A.a.d #36	ENSGT00390000005911 #37	ENSGT00950000182942.a.b
Mangrove rivulus	MODERN SPECIES	78											DIP2A (ENSKMAG00000011203) #17	ENSKMAG00000011549 #18	hycc2 (ENSKMAG00000011583) #19	trpm2 (ENSKMAG00000011719) #20	MAP3K13 (ENSKMAG00000011794) #21	PFKL (ENSKMAG00000011853) #22	TMEM169 (ENSKMAG00000011897) #23	xrcc5 (ENSKMAG00000011921) #24	COL6A2 (ENSKMAG00000011962) #25	MARCHF4 (ENSKMAG00000012001) #27	SMARCAL1 (ENSKMAG00000012023) #28	nme9 (ENSKMAG00000012056) #29	zgc:162707 (ENSKMAG00000012092) #30	ehhadh (ENSKMAG00000012099) #31	tmem41aa (ENSKMAG00000012117) #32	igf2bp2a (ENSKMAG00000012177) #33	tra2b (ENSKMAG00000012273) #34	ENSKMAG00000012295 #35	ENSKMAG00000012311 #36	ANKZF1 (ENSKMAG00000012399) #37	glb1l (ENSKMAG00000012339)
Turquoise killifish	MODERN SPECIES	1623	ENSNFUG00015025221	ENSNFUG00015025219 #11	ENSNFUG00015025218 #12	ENSNFUG00015025216	ercc1 (ENSNFUG00015025214) #13	prmt2 (ENSNFUG00015025212) #14	CABZ01067071.1 (ENSNFUG00015025211) #15	ENSNFUG00015025210 #16	DIP2A (ENSNFUG00015025203) #17	ENSNFUG00015025202	CFLAR (ENSNFUG00015025201) #18	FAM126B (ENSNFUG00015025198) #19	TRPM2 (ENSNFUG00015025173) #20	MAP3K13 (ENSNFUG00015025154) #21	ENSNFUG00015025139	PFKL (ENSNFUG00015025023) #22	TMEM169 (ENSNFUG00015025012) #23	xrcc5 (ENSNFUG00015024995) #24	COL6A2 (ENSNFUG00015024962) #25	DNAL1 (ENSNFUG00015024954)	MARCH4 (ENSNFUG00015024950) #27	SMARCAL1 (ENSNFUG00015024913) #28	nme9 (ENSNFUG00015024888) #29	zgc:162707 (ENSNFUG00015024880) #30	ehhadh (ENSNFUG00015024876) #31	TMEM41AA (ENSNFUG00015024872) #32	IGF2BP2A (ENSNFUG00015024804) #33	tra2b (ENSNFUG00015024781) #34	ENSNFUG00015024694 #35	ENSNFUG00015024684 #36	ANKZF1 (ENSNFUG00015024679) #37
Cyprinodontoidei	ANCESTRAL SPECIES	13	ENSGT00950000182882.A.b.b.e	ENSGT00940000164444.a #7	ENSGT00930000151029.i.a #8	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00740000117080	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT01030000235116 #26	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000177394	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35
Poeciliinae	ANCESTRAL SPECIES	25	ENSGT00940000164444.a #7	ENSGT00930000151029.i.a #8	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b.f #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866.o.a #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404.nb.b.a.a.a #20	ENSGT00940000156404.nb.a #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00740000117080	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT01030000235116 #26	ENSGT00940000158208.b	ENSGT00940000157608 #28	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000161051.a.a.a.a.b ##35
Poecilia	ANCESTRAL SPECIES	13	ENSGT00940000164444.a #7	ENSGT00930000151029.i.a #8	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b.f #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866.o.a #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404.nb.b.a.a.a #20	ENSGT00940000156404.nb.a #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00740000117080	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT01030000235116 #26	ENSGT00940000158208.b	ENSGT00940000157608 #28	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000161051.a.a.a.a.b ##35
NAME_6	ANCESTRAL SPECIES	265					ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866.o.a #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404.nb.b.a.a.a #20	ENSGT00940000156404.nb.a #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00740000117080	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT01030000235116 #26	ENSGT00940000158208.b	ENSGT00940000157608 #28	ENSGT00940000164537 #29
Sailfin molly	MODERN SPECIES	268				ercc1 (ENSPLAG00000000472) #13	prmt2 (ENSPLAG00000022074) #14	ENSPLAG00000022041 #16	ENSPLAG00000022010 #15	ENSPLAG00000021985 #16	DIP2A (ENSPLAG00000021961) #17	ENSPLAG00000021848 #18	hycc2 (ENSPLAG00000021843) #19	ENSPLAG00000021829 #20	trpm2 (ENSPLAG00000021799) #20	trpm2 (ENSPLAG00000021685) #20	MAP3K13 (ENSPLAG00000021630) #21	PFKL (ENSPLAG00000021587) #22	TMEM169 (ENSPLAG00000021551) #23	xrcc5 (ENSPLAG00000021546) #24	COL6A2 (ENSPLAG00000021540) #25	ENSPLAG00000021527 #26	MARCHF9 (ENSPLAG00000021521)
Amazon molly	MODERN SPECIES	697														trpm2 (ENSPFOG00000000056) #20	MAP3K13 (ENSPFOG00000000130) #21	PFKL (ENSPFOG00000000166) #22	ENSPFOG00000023152	TMEM169 (ENSPFOG00000000226) #23	xrcc5 (ENSPFOG00000000246) #24	COL6A2 (ENSPFOG00000000302) #25	MARCHF9 (ENSPFOG00000000507)	SMARCAL1 (ENSPFOG00000000560) #28	nme9 (ENSPFOG00000000739) #29
Guppy	MODERN SPECIES	450	snx4 (ENSPREG00000010854) #8	ARSD (ENSPREG00000010574) #10	ENSPREG00000010525 #11	ENSPREG00000010502 #11	ENSPREG00000010465 #12	ercc1 (ENSPREG00000010451) #13	prmt2 (ENSPREG00000010427) #14	ENSPREG00000010413	ENSPREG00000010406 #16	ENSPREG00000010389 #16	DIP2A (ENSPREG00000010145) #17	ENSPREG00000010084 #18	hycc2 (ENSPREG00000010028) #19	TRPM2 (ENSPREG00000009936) #20	MAP3K13 (ENSPREG00000009876) #21	PFKL (ENSPREG00000009825) #22	TMEM169 (ENSPREG00000009814) #23	xrcc5 (ENSPREG00000009711) #24	COL6A2 (ENSPREG00000009680) #25	MARCHF9 (ENSPREG00000009664)	SMARCAL1 (ENSPREG00000009591) #28	ENSPREG00000009577	nme9 (ENSPREG00000009546) #29	zgc:162707 (ENSPREG00000009511) #30	ehhadh (ENSPREG00000009505) #31	tmem41aa (ENSPREG00000009491) #32	igf2bp2a (ENSPREG00000009440) #33	tra2b (ENSPREG00000009405) #34	ENSPREG00000009384 #35	ENSPREG00000009375 ##35	ANKZF1 (ENSPREG00000009367) #37
Platyfish	MODERN SPECIES	21	ihha (ENSXMAG00000015886) #7	snx4 (ENSXMAG00000015869) #8	ARSD (ENSXMAG00000015844) #10	ENSXMAG00000015840 #11	ENSXMAG00000015816 #12	ercc1 (ENSXMAG00000015806) #13	prmt2 (ENSXMAG00000015793) #14	ENSXMAG00000026615	ENSXMAG00000016351 #16	DIP2A (ENSXMAG00000016253) #17	ENSXMAG00000015789 #18	hycc2 (ENSXMAG00000015770) #19	trpm2 (ENSXMAG00000015757) #20	trpm2 (ENSXMAG00000015702) #20	MAP3K13 (ENSXMAG00000015692) #21	PFKL (ENSXMAG00000015646) #22	TMEM169 (ENSXMAG00000015642) #23	xrcc5 (ENSXMAG00000015625) #24	COL6A2 (ENSXMAG00000015599) #25	MARCHF9 (ENSXMAG00000021114)	SMARCAL1 (ENSXMAG00000015575) #28	nme9 (ENSXMAG00000015556) #29	zgc:162707 (ENSXMAG00000022603) #30	ehhadh (ENSXMAG00000021635) #31	tmem41aa (ENSXMAG00000015534) #32	igf2bp2a (ENSXMAG00000015507) #33	tra2b (ENSXMAG00000001784) #34	ENSXMAG00000015483 #35	ENSXMAG00000015480 #36	ENSXMAG00000015465 #37	glb1l (ENSXMAG00000015413)
NAME_4	ANCESTRAL SPECIES	32	ENSGT00950000182882.A.b.b.e	ENSGT00940000164444.a.d #7	ENSGT00930000151029.i.a #8	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT01030000235116 #26	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000177394	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000154856.A.a.d #36
Mummichog	MODERN SPECIES	2402						DIP2A (ENSFHEG00000009229) #17	ENSFHEG00000009144	ENSFHEG00000009095 #18	hycc2 (ENSFHEG00000009077) #19	ENSFHEG00000009018 #20	ENSFHEG00000008954 #20	ENSFHEG00000008885 #20	ENSFHEG00000008813 #20	ENSFHEG00000008787 #20	MAP3K13 (ENSFHEG00000008670) #21	PFKL (ENSFHEG00000008593) #22	TMEM169 (ENSFHEG00000008494) #23	xrcc5 (ENSFHEG00000008475) #24	ENSFHEG00000008458 #25	ENSFHEG00000008422 #26	MARCHF4 (ENSFHEG00000008402) #27	SMARCAL1 (ENSFHEG00000008380) #28	nme9 (ENSFHEG00000008367) #29	zgc:162707 (ENSFHEG00000008323) #30	ehhadh (ENSFHEG00000008315) #31	tmem41aa (ENSFHEG00000008292) #32	igf2bp2a (ENSFHEG00000008263) #33	tra2b (ENSFHEG00000008203) #34	ENSFHEG00000008189 #35	ENSFHEG00000008172 #36	ENSFHEG00000008104 #37
Sheepshead minnow	MODERN SPECIES	468		ENSCVAG00000019689 #7	snx4 (ENSCVAG00000019663) #8	ARSD (ENSCVAG00000019609) #10	ENSCVAG00000019594 #11	ENSCVAG00000019566 #12	ercc1 (ENSCVAG00000019532) #13	prmt2 (ENSCVAG00000019527) #14	ENSCVAG00000019519 #15	ENSCVAG00000019510 #16	DIP2A (ENSCVAG00000019472) #17	ENSCVAG00000019371 #18	hycc2 (ENSCVAG00000019237) #19	trpm2 (ENSCVAG00000019145) #20	MAP3K13 (ENSCVAG00000019010) #21	PFKL (ENSCVAG00000018982) #22	TMEM169 (ENSCVAG00000018924) #23	xrcc5 (ENSCVAG00000018914) #24	ENSCVAG00000018898 #25	ENSCVAG00000018852 #26	MARCHF9 (ENSCVAG00000018810)	SMARCAL1 (ENSCVAG00000018780) #28	ENSCVAG00000018766	nme9 (ENSCVAG00000018754) #29
Oryzias	ANCESTRAL SPECIES	10	ENSGT00930000151029.i.a #8	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866.l.a #16	ENSGT01100000263521.b	ENSGT00940000164866.k #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT01030000235116 #26	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000154856.A.a.d #36	ENSGT00390000005911 #37
Oryzias_b	ANCESTRAL SPECIES	10	ENSGT00930000151029.i.a #8	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866.l.a #16	ENSGT01100000263521.b	ENSGT00940000164866.k #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT01030000235116 #26	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000154856.A.a.d #36	ENSGT00390000005911.k #37
Indian medaka	MODERN SPECIES	18	BIN1 (ENSOMEG00000001504)	ihha (ENSOMEG00000001513) #7	snx4 (ENSOMEG00000001521) #8	ARSD (ENSOMEG00000001528) #10	ENSOMEG00000001545 #11	ENSOMEG00000001560 #12	ercc1 (ENSOMEG00000001587) #13	prmt2 (ENSOMEG00000001593) #14	ENSOMEG00000001598	ENSOMEG00000001602 #16	DIP2A (ENSOMEG00000001649) #17	ENSOMEG00000001680 #18	hycc2 (ENSOMEG00000001700) #19	trpm2 (ENSOMEG00000001747) #20	MAP3K13 (ENSOMEG00000001768) #21	PFKL (ENSOMEG00000001783) #22	TMEM169 (ENSOMEG00000001790) #23	xrcc5 (ENSOMEG00000001816) #24	ENSOMEG00000001820 #25	ENSOMEG00000001828 #26	MARCHF4 (ENSOMEG00000001832) #27	SMARCAL1 (ENSOMEG00000001845) #28	nme9 (ENSOMEG00000001858) #29	zgc:162707 (ENSOMEG00000001863) #30	ehhadh (ENSOMEG00000001872) #31	tmem41aa (ENSOMEG00000001879) #32	igf2bp2a (ENSOMEG00000001908) #33	tra2b (ENSOMEG00000000738) #34	ENSOMEG00000001926 #35	ENSOMEG00000001932 #36	ENSOMEG00000001937 #37
Javanese ricefish	MODERN SPECIES	13	myl1 (ENSOJAG00000023978)	CPS1 (ENSOJAG00000023907)	ERBB4 (ENSOJAG00000023771)	IKZF2 (ENSOJAG00000023709)	vwc2l (ENSOJAG00000023705)	BARD1 (ENSOJAG00000023702)	ABCA12 (ENSOJAG00000023678)	pofut2 (ENSOJAG00000023650)	MPPED1 (ENSOJAG00000023646)	slco1d1 (ENSOJAG00000023608)	SLC2A13 (ENSOJAG00000023581)	DIP2A (ENSOJAG00000023414) #17	ENSOJAG00000023347 #18	hycc2 (ENSOJAG00000023326) #19	MAP3K13 (ENSOJAG00000023295) #21	PFKL (ENSOJAG00000023258) #22	TMEM169 (ENSOJAG00000023227) #23	xrcc5 (ENSOJAG00000023123) #24	MARCHF4 (ENSOJAG00000023073) #27	SMARCAL1 (ENSOJAG00000022962) #28	nme9 (ENSOJAG00000022929) #29	zgc:162707 (ENSOJAG00000022928) #30	ehhadh (ENSOJAG00000022915) #31	tmem41aa (ENSOJAG00000022894) #32	igf2bp2a (ENSOJAG00000022770) #33	tra2b (ENSOJAG00000022708) #34	ENSOJAG00000022707 #35	ENSOJAG00000022701 #36	ANKZF1 (ENSOJAG00000022699) #37	ENSOJAG00000022216	ENSOJAG00000022176
Oryzias_a	ANCESTRAL SPECIES	21	ENSGT00940000164444.a #7	ENSGT00930000151029.i.a #8	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866.l.a #16	ENSGT00940000164866.l.b #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000154856.A.a.d #36	ENSGT00390000005911 #37	ENSGT00950000182942.a.b
Japanese Medaka HdrR	MODERN SPECIES	13	ARSD (ENSORLG00000016189) #10	ENSORLG00000016206 #11	ENSORLG00000028523	ENSORLG00000016217 #12	ercc1 (ENSORLG00000016225) #13	prmt2 (ENSORLG00000016240) #14	ENSORLG00000016243 #15	ENSORLG00000024731 #16	ENSORLG00000019524 #17	ENSORLG00000025038 #16	DIP2A (ENSORLG00000016258) #17	cflar (ENSORLG00000016267) #18	hycc2 (ENSORLG00000016277) #19	trpm2 (ENSORLG00000016331) #20	MAP3K13 (ENSORLG00000016342) #21	PFKL (ENSORLG00000016369) #22	TMEM169 (ENSORLG00000022975) #23	xrcc5 (ENSORLG00000016396) #24	ENSORLG00000016429 #25	ENSORLG00000021789	MARCHF4 (ENSORLG00000016440) #27	SMARCAL1 (ENSORLG00000016455) #28	nme9 (ENSORLG00000016469) #29	zgc:162707 (ENSORLG00000016472) #30	ehhadh (ENSORLG00000016481) #31	tmem41aa (ENSORLG00000016494) #32	igf2bp2a (ENSORLG00000016532) #33	tra2b (ENSORLG00000016554) #34	mc6ast5 (ENSORLG00000016557) #35	mc6ast4 (ENSORLG00000016562) #36	ANKZF1 (ENSORLG00000016576) #37
Ovalentaria_B	ANCESTRAL SPECIES	12	ENSGT00940000164444.a #7	ENSGT00930000151029.i.a #8	ENSGT00940000177459 #9	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT01030000235116 #26	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000177394	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000154856.A.a.d #36
Cichlidae	ANCESTRAL SPECIES	14	ENSGT00950000182882.A.b.b.e	ENSGT00940000164444.a #7	ENSGT00930000151029.i.a #8	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT01030000235116 #26	ENSGT00950000183126.a.p.a.o	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000177394	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35
Pseudocrenilabrinae	ANCESTRAL SPECIES	15	ENSGT00940000164444.a #7	ENSGT00930000151029.i.a #8	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866.q.a.b.a #16	ENSGT00940000164866.q.a.a #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT01030000235116 #26	ENSGT00950000183126.a.p.a.o.b	ENSGT00950000183126.a.p.a.o.a	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000177394	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	14	ENSGT00940000164444.a #7	ENSGT00930000151029.i.a #8	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866.q.a.b.a #16	ENSGT00940000164866.q.a.a #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT01030000235116 #26	ENSGT00950000183126.a.p.a.o.b	ENSGT00950000183126.a.p.a.o.a	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000177394	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34
Haplochromini	ANCESTRAL SPECIES	19	ENSGT00940000164444.a #7	ENSGT00930000151029.i.a #8	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866.q.a.b.a #16	ENSGT00940000164866.r #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT01030000235116 #26	ENSGT00950000183126.a.p.a.o.b	ENSGT00950000183126.a.p.a.o.a	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000177394	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34
Haplochromini_A	ANCESTRAL SPECIES	19	ENSGT00930000151029.i.a #8	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866.q.a.b.a #16	ENSGT00940000164866.q.b #16	ENSGT00940000164866.q.a.a #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT01030000235116 #26	ENSGT00950000183126.a.p.a.o.b	ENSGT00950000183126.a.p.a.o.a	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000177394	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34
Haplochromini_B	ANCESTRAL SPECIES	17	ENSGT00930000151029.i.a #8	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000165332.B #15	ENSGT00940000160683 #14	ENSGT00940000164866.q.a.b.a #16	ENSGT00940000164866.q.b #16	ENSGT00940000164866.q.a.a #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT01030000235116 #26	ENSGT00950000183126.a.p.a.o.b	ENSGT00950000183126.a.p.a.o.a	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913 #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35
Eastern happy	MODERN SPECIES	7	ARSD (ENSACLG00000017616) #10	ENSACLG00000017564 #11	ENSACLG00000017506 #12	ercc1 (ENSACLG00000017486) #13	ENSACLG00000017480 #15	prmt2 (ENSACLG00000017462) #14	ENSACLG00000017436 #16	ENSACLG00000017330 #16	ENSACLG00000017318	ENSACLG00000017309 #16	DIP2A (ENSACLG00000016955) #17	ENSACLG00000016906 #18	hycc2 (ENSACLG00000016763) #19	trpm2 (ENSACLG00000016644) #20	MAP3K13 (ENSACLG00000016481) #21	PFKL (ENSACLG00000016404) #22	TMEM169 (ENSACLG00000016388) #23	xrcc5 (ENSACLG00000016331) #24	COL6A2 (ENSACLG00000016186) #25	ENSACLG00000016169	ENSACLG00000016093	MARCHF4 (ENSACLG00000016071) #27	SMARCAL1 (ENSACLG00000015990) #28	nme9 (ENSACLG00000015875) #29	zgc:162707 (ENSACLG00000015853) #30	ehhadh (ENSACLG00000015819) #31	tmem41aa (ENSACLG00000015796) #32	igf2bp2a (ENSACLG00000015512) #33	tra2b (ENSACLG00000015461) #34	ENSACLG00000015432 #35	ENSACLG00000015369 #36
Zebra mbuna	MODERN SPECIES	1098	ercc1 (ENSMZEG00005009646) #13	ENSMZEG00005009641 #15	prmt2 (ENSMZEG00005009630) #14	ENSMZEG00005009612 #16	ENSMZEG00005009599	ntm (ENSMZEG00005009583)	opcml (ENSMZEG00005009567)	ENSMZEG00005009556	ENSMZEG00005009545	ENSMZEG00005009529 #16	DIP2A (ENSMZEG00005009388) #17	ENSMZEG00005009363 #18	hycc2 (ENSMZEG00005009350) #19	trpm2 (ENSMZEG00005009295) #20	MAP3K13 (ENSMZEG00005009269) #21	PFKL (ENSMZEG00005009192) #22	TMEM169 (ENSMZEG00005009179) #23	xrcc5 (ENSMZEG00005009043) #24	ENSMZEG00005009014 #25	TANC1 (ENSMZEG00005008882)	DAPL1 (ENSMZEG00005008853)	PKP4 (ENSMZEG00005008828)	ENSMZEG00005008806	upp2 (ENSMZEG00005008793)	ENSMZEG00005008772	ENSMZEG00005008721	ACVR1C (ENSMZEG00005008690)	CYTIP (ENSMZEG00005008668)	GALNT5 (ENSMZEG00005008302)	ENSMZEG00005008236	nr4a2a (ENSMZEG00005008220)
P. nyererei	MODERN SPECIES	304	ARSD (ENSPNYG00000019558) #10	ENSPNYG00000019569 #11	ENSPNYG00000019580 #12	ercc1 (ENSPNYG00000019606) #13	prmt2 (ENSPNYG00000019621) #14	ENSPNYG00000019648 #15	ENSPNYG00000019666 #16	ENSPNYG00000019701 #16	ENSPNYG00000019740 #16	ENSPNYG00000019776 #16	DIP2A (ENSPNYG00000019802) #17	ENSPNYG00000019883 #18	hycc2 (ENSPNYG00000019965) #19	trpm2 (ENSPNYG00000000679) #20	MAP3K13 (ENSPNYG00000000790) #21	PFKL (ENSPNYG00000000802) #22	TMEM169 (ENSPNYG00000000898) #23	xrcc5 (ENSPNYG00000000911) #24	ENSPNYG00000000925 #25	ENSPNYG00000000944 #26	ENSPNYG00000000965	ENSPNYG00000000972	MARCHF4 (ENSPNYG00000000999) #27	SMARCAL1 (ENSPNYG00000001058) #28	ENSPNYG00000001099	nme9 (ENSPNYG00000001110) #29	zgc:162707 (ENSPNYG00000001153) #30	ehhadh (ENSPNYG00000001157) #31	ENSPNYG00000001166 #32	igf2bp2a (ENSPNYG00000001187) #33	tra2b (ENSPNYG00000001238) #34
Burton s mouthbrooder	MODERN SPECIES	292	ihha (ENSHBUG00000002444) #7	snx4 (ENSHBUG00000002456) #8	ARSD (ENSHBUG00000002466) #10	ENSHBUG00000002478 #11	ENSHBUG00000002501 #12	ercc1 (ENSHBUG00000002515) #13	prmt2 (ENSHBUG00000002521) #14	ENSHBUG00000002524	ENSHBUG00000002551 #16	ENSHBUG00000002573 #16	DIP2A (ENSHBUG00000002696) #17	ENSHBUG00000001010 #18	hycc2 (ENSHBUG00000001171) #19	trpm2 (ENSHBUG00000002764) #20	MAP3K13 (ENSHBUG00000002814) #21	PFKL (ENSHBUG00000002877) #22	TMEM169 (ENSHBUG00000002883) #23	xrcc5 (ENSHBUG00000002906) #24	COL6A2 (ENSHBUG00000002922) #25	ENSHBUG00000002949	MARCHF4 (ENSHBUG00000000068) #27	SMARCAL1 (ENSHBUG00000002973) #28	nme9 (ENSHBUG00000003004) #29	zgc:162707 (ENSHBUG00000003020) #30	ehhadh (ENSHBUG00000003028) #31	tmem41aa (ENSHBUG00000003047) #32	igf2bp2a (ENSHBUG00000003126) #33	tra2b (ENSHBUG00000003145) #34	ENSHBUG00000003161 #35	ENSHBUG00000003190 #36	ANKZF1 (ENSHBUG00000003208) #37
Lyretail cichlid	MODERN SPECIES	303	snx4 (ENSNBRG00000017482) #8	ARSD (ENSNBRG00000017455) #10	ENSNBRG00000017391 #11	ENSNBRG00000017353 #12	ercc1 (ENSNBRG00000017310) #13	prmt2 (ENSNBRG00000017273) #14	ENSNBRG00000017262 #15	ENSNBRG00000017248 #16	DIP2A (ENSNBRG00000017189) #17	ENSNBRG00000017163 #18	hycc2 (ENSNBRG00000017132) #19	ENSNBRG00000016863 #20	trpm2 (ENSNBRG00000016802) #20	ENSNBRG00000016764	MAP3K13 (ENSNBRG00000016703) #21	PFKL (ENSNBRG00000016638) #22	TMEM169 (ENSNBRG00000016609) #23	xrcc5 (ENSNBRG00000016487) #24	COL6A2 (ENSNBRG00000016418) #25	ENSNBRG00000016401	MARCHF4 (ENSNBRG00000016380) #27	SMARCAL1 (ENSNBRG00000016273) #28	ENSNBRG00000016254	nme9 (ENSNBRG00000016220) #29	zgc:162707 (ENSNBRG00000016203) #30	ehhadh (ENSNBRG00000016194) #31	tmem41aa (ENSNBRG00000016175) #32	igf2bp2a (ENSNBRG00000016140) #33	tra2b (ENSNBRG00000016092) #34	ENSNBRG00000016058 #35	ENSNBRG00000016037 #36
Nile tilapia	MODERN SPECIES	7	snx4 (ENSONIG00000004151) #8	ENSONIG00000004145 #10	ENSONIG00000004142 #11	ENSONIG00000004137 #12	ercc1 (ENSONIG00000004132) #13	prmt2 (ENSONIG00000004127) #14	ENSONIG00000036478 #16	ENSONIG00000037894 #16	ENSONIG00000040443 #16	DIP2A (ENSONIG00000009096) #17	ENSONIG00000032971 #18	ENSONIG00000009095 #18	fam126b (ENSONIG00000031870) #19	trpm2 (ENSONIG00000009086) #20	MAP3K13 (ENSONIG00000009084) #21	PFKL (ENSONIG00000009075) #22	tmem169 (ENSONIG00000036428) #23	xrcc5 (ENSONIG00000009057) #24	COL6A2 (ENSONIG00000009044) #25	ENSONIG00000009040	ENSONIG00000034118	ENSONIG00000036866	MARCHF4 (ENSONIG00000009038) #27	SMARCAL1 (ENSONIG00000009036) #28	nme9 (ENSONIG00000009034) #29	zgc:162707 (ENSONIG00000029797) #30	ehhadh (ENSONIG00000036880) #31	tmem41aa (ENSONIG00000040431) #32	igf2bp2a (ENSONIG00000009029) #33	tra2b (ENSONIG00000009025) #34	ENSONIG00000009023 #35
Midas cichlid	MODERN SPECIES	1312										DIP2A (ENSACIG00000002167) #17	ENSACIG00000002126 #18	hycc2 (ENSACIG00000002107) #19	ENSACIG00000002037 #20	ENSACIG00000002000 #20	MAP3K13 (ENSACIG00000001962) #21	PFKL (ENSACIG00000001893) #22	TMEM169 (ENSACIG00000001883) #23	xrcc5 (ENSACIG00000001685) #24	ENSACIG00000001656 #25	ENSACIG00000001629 #26	ENSACIG00000001602	MARCHF4 (ENSACIG00000001550) #27	SMARCAL1 (ENSACIG00000001500) #28	ENSACIG00000001490	nme9 (ENSACIG00000001452) #29	zgc:162707 (ENSACIG00000001437) #30	ehhadh (ENSACIG00000001368) #31	tmem41aa (ENSACIG00000001348) #32	igf2bp2a (ENSACIG00000001308) #33	tra2b (ENSACIG00000001289) #34	ENSACIG00000001261 #35
Pomacentridae	ANCESTRAL SPECIES	17	ENSGT00940000164444.a #7	ENSGT00930000151029.i.a #8	ENSGT00940000177459 #9	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b.j.b #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT01030000235116 #26	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000177394	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913.q #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000154856.A.a.d #36
Pomacentridae_A	ANCESTRAL SPECIES	14	ENSGT00940000164444.a #7	ENSGT00930000151029.i.a #8	ENSGT00940000177459 #9	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b.j.b #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT01030000235116 #26	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913.q #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000154856.A.a.d #36	ENSGT00390000005911 #37
Amphiprion	ANCESTRAL SPECIES	8	ENSGT00940000164444.a #7	ENSGT00930000151029.i.a #8	ENSGT00940000177459 #9	ENSGT00940000161140 #10	ENSGT00940000159942.a.c.b.j.b #11	ENSGT00940000156607.a.b #12	ENSGT00390000011275 #13	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT01030000235116 #26	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000164537 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412 #32	ENSGT00940000154913.q #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000154856.A.a.d #36	ENSGT00390000005911 #37
Clown anemonefish	MODERN SPECIES	1499													hycc2 (ENSAOCG00000022407) #19	trpm2 (ENSAOCG00000022365) #20	MAP3K13 (ENSAOCG00000022293) #21	PFKL (ENSAOCG00000002417) #22	TMEM169 (ENSAOCG00000022166) #23
Orange clownfish	MODERN SPECIES	3	ENSAPEG00000014989 #10	ENSAPEG00000015006 #11	ENSAPEG00000015043 #11	ENSAPEG00000015062 #11	ENSAPEG00000015099 #12	ercc1 (ENSAPEG00000015157) #13	prmt2 (ENSAPEG00000015165) #14	ENSAPEG00000015178 #15	ENSAPEG00000015186 #16	DIP2A (ENSAPEG00000015236) #17	ENSAPEG00000015432 #18	hycc2 (ENSAPEG00000015448) #19	trpm2 (ENSAPEG00000015548) #20	ENSAPEG00000015627	MAP3K13 (ENSAPEG00000015656) #21	PFKL (ENSAPEG00000015689) #22	TMEM169 (ENSAPEG00000015766) #23	xrcc5 (ENSAPEG00000015778) #24	ENSAPEG00000015807 #25	ENSAPEG00000015813 #26	MARCHF4 (ENSAPEG00000015828) #27	SMARCAL1 (ENSAPEG00000015861) #28	nme9 (ENSAPEG00000015896) #29	zgc:162707 (ENSAPEG00000015979) #30	ehhadh (ENSAPEG00000015995) #31	tmem41aa (ENSAPEG00000016010) #32	igf2bp2a (ENSAPEG00000016037) #33	tra2b (ENSAPEG00000016141) #34	ENSAPEG00000016161 #35	ENSAPEG00000016190 #36	ENSAPEG00000016246 #37
Spiny chromis	MODERN SPECIES	247		ENSAPOG00000019214 #11	ENSAPOG00000019263 #11	ENSAPOG00000019299 #12	ercc1 (ENSAPOG00000019312) #13	ENSAPOG00000019351	ENSAPOG00000019370	prmt2 (ENSAPOG00000019380) #14	ENSAPOG00000019453 #16	DIP2A (ENSAPOG00000019584) #17	ENSAPOG00000019602	ENSAPOG00000019607 #18	hycc2 (ENSAPOG00000019672) #19	trpm2 (ENSAPOG00000019812) #20	MAP3K13 (ENSAPOG00000019855) #21	PFKL (ENSAPOG00000019989) #22	TMEM169 (ENSAPOG00000019993) #23	xrcc5 (ENSAPOG00000020006) #24	COL6A2 (ENSAPOG00000020016) #25	MARCHF4 (ENSAPOG00000020079) #27	SMARCAL1 (ENSAPOG00000020156) #28	nme9 (ENSAPOG00000020251) #29	zgc:162707 (ENSAPOG00000020273) #30	ehhadh (ENSAPOG00000020301) #31	ehhadh (ENSAPOG00000020320) #31
Bicolor damselfish	MODERN SPECIES	747					ENSSPAG00000000032 #11	ENSSPAG00000021761 #12	ercc1 (ENSSPAG00000021674) #13	prmt2 (ENSSPAG00000021664) #14	ENSSPAG00000021653	ENSSPAG00000021645 #16	DIP2A (ENSSPAG00000021512) #17	ENSSPAG00000021489 #18	hycc2 (ENSSPAG00000021461) #19	trpm2 (ENSSPAG00000021413) #20	MAP3K13 (ENSSPAG00000021367) #21	PFKL (ENSSPAG00000021312) #22	TMEM169 (ENSSPAG00000021305) #23
Tiger tail seahorse	MODERN SPECIES	313	ENSHCOG00000015460 #11	ENSHCOG00000017217 #12	ercc1 (ENSHCOG00000017316) #13	prmt2 (ENSHCOG00000017343) #14	ENSHCOG00000017354 #16	DIP2A (ENSHCOG00000017424) #17	ENSHCOG00000017437	ENSHCOG00000017456	ENSHCOG00000017464 #18	hycc2 (ENSHCOG00000017492) #19	ENSHCOG00000017504	trpm2 (ENSHCOG00000017597) #20	ENSHCOG00000017618 #20	ENSHCOG00000017629 #20	MAP3K13 (ENSHCOG00000017685) #21	PFKL (ENSHCOG00000017753) #22	TMEM169 (ENSHCOG00000017761) #23	xrcc5 (ENSHCOG00000017773) #24	COL6A2 (ENSHCOG00000017794) #25	MARCHF4 (ENSHCOG00000017906) #27	SMARCAL1 (ENSHCOG00000017921) #28	ENSHCOG00000017928 #29	nme9 (ENSHCOG00000017975) #29	zgc:162707 (ENSHCOG00000017988) #30	ehhadh (ENSHCOG00000018012) #31	tmem41aa (ENSHCOG00000018036) #32	igf2bp2a (ENSHCOG00000018090) #33	ANKZF1 (ENSHCOG00000018225) #37	glb1l (ENSHCOG00000018244)	ENSHCOG00000018260	ENSHCOG00000018273
Pinecone sodierfish	MODERN SPECIES	13	snx4 (ENSMMDG00005023926) #8	ENSMMDG00005024039 #9	ARSD (ENSMMDG00005024067) #10	ENSMMDG00005024156 #11	ENSMMDG00005024160 #12	mab21l3 (ENSMMDG00005024164)	ercc1 (ENSMMDG00005024166) #13	prmt2 (ENSMMDG00005024170) #14	ENSMMDG00005002510 #15	ENSMMDG00005002521 #16	DIP2A (ENSMMDG00005002972) #17	ENSMMDG00005008769 #18	hycc2 (ENSMMDG00005008777) #19	trpm2 (ENSMMDG00005009219) #20	MAP3K13 (ENSMMDG00005009367) #21	PFKL (ENSMMDG00005009446) #22	TMEM169 (ENSMMDG00005011183) #23	xrcc5 (ENSMMDG00005011217) #24	ENSMMDG00005011762 #25	COL6A2 (ENSMMDG00005011763) #25	MARCHF4 (ENSMMDG00005011767) #27	SMARCAL1 (ENSMMDG00005011782) #28	ENSMMDG00005012370 #29	nme9 (ENSMMDG00005012373) #29	zgc:162707 (ENSMMDG00005012376) #30	ehhadh (ENSMMDG00005012377) #31	tmem41aa (ENSMMDG00005012383) #32	igf2bp2a (ENSMMDG00005012390) #33	tra2b (ENSMMDG00005012404) #34	ENSMMDG00005012405 #35	ENSMMDG00005012414 #36
Cod	MODERN SPECIES	12	ENSGMOG00000030808	ENSGMOG00000017781 #13	ENSGMOG00000017765	ENSGMOG00000030992 #16	ENSGMOG00000017606 #17	ENSGMOG00000023701	ENSGMOG00000028059 #18	ENSGMOG00000009496 #19	ENSGMOG00000029329	ENSGMOG00000035105	trpm2 (ENSGMOG00000015349) #20	ENSGMOG00000035286	ENSGMOG00000011554 #21	ENSGMOG00000023839	ENSGMOG00000024551	ENSGMOG00000014643 #22	ENSGMOG00000023606	ENSGMOG00000034883 #23	xrcc5 (ENSGMOG00000014582) #24	ENSGMOG00000014528 #25	ENSGMOG00000029514	ENSGMOG00000002281	ENSGMOG00000030938	ENSGMOG00000037051	cerkl (ENSGMOG00000014633)	neurod1 (ENSGMOG00000027437)	ENSGMOG00000032801	PDE1A (ENSGMOG00000009168)	frzb (ENSGMOG00000013868)	dnajc10 (ENSGMOG00000000883)	ENSGMOG00000024544
Protacanthopterygii	ANCESTRAL SPECIES	99		ENSGT00940000159262	ENSGT00390000002862.tb	ENSGT00390000002862.ub	ENSGT00940000155953	ENSGT00950000182883.b.a.a	ENSGT00940000159677.a.b.w	ENSGT00940000160683 #14	ENSGT00940000165332.B #15	ENSGT00940000164866 #16	ENSGT00950000182997.a.b.b.a #17	ENSGT00530000064199 #18	ENSGT00390000011295.a #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276 #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000164537 #29	ENSGT00940000158179.a ##27	ENSGT00390000010672	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412.b #32	ENSGT00940000154913.p.a #33	ENSGT00950000183009.db.b #34	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000161051.a.a.a.a.b ##35
Northern pike	MODERN SPECIES	19	ENSELUG00000009637 #16	DIP2A (ENSELUG00000009605) #17	ENSELUG00000030962	ENSELUG00000032432	ENSELUG00000009504 #18	hycc2 (ENSELUG00000009489) #19	trpm2 (ENSELUG00000009466) #20	ENSELUG00000026929	ENSELUG00000021765	ENSELUG00000010075	ENSELUG00000010086	ENSELUG00000026676	ENSELUG00000010093	ENSELUG00000031578 #20	MAP3K13 (ENSELUG00000010167) #21	PFKL (ENSELUG00000010230) #22	TMEM169 (ENSELUG00000010252) #23	xrcc5 (ENSELUG00000001093) #24	COL6A2 (ENSELUG00000010387) #25	MARCHF9 (ENSELUG00000010413)	ENSELUG00000010440 #28	nme9 (ENSELUG00000010559) #29	ENSELUG00000010491	ENSELUG00000029425	zgc:162707 (ENSELUG00000025175) #30	ehhadh (ENSELUG00000010632) #31	tmem41aa (ENSELUG00000010646) #32	igf2bp2a (ENSELUG00000010676) #33	tra2b (ENSELUG00000010705) #34	ENSELUG00000010731 #35	ENSELUG00000010749 ##35
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	304									ENSGT00390000002862.ub	ENSGT00940000155953.i.b.a	ENSGT00950000182883.b.a.a.h	ENSGT00950000182997.a.b.b.a.a.a #17	ENSGT00530000064199 #18	ENSGT00940000156404.wb #20	ENSGT00940000158216 #21	ENSGT00940000159292.k.a #22	ENSGT00390000015276 #23	ENSGT00940000155682.g.a #25	ENSGT00940000158179.b #27	ENSGT00940000157608.c #28	ENSGT00940000164537 #29	ENSGT00940000158179.a ##27	ENSGT00390000010672	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412.b #32	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000161051.a.a.a.a.b ##35	ENSGT00390000005911 #37	ENSGT00950000182942.a.b	ENSGT00940000164909.e.a
Salmoninae_a	ANCESTRAL SPECIES										ENSGT00390000002862.ub	ENSGT00940000155953.i.b.a	ENSGT00950000182883.b.a.a.h	ENSGT00950000182997.a.b.b.a.b #17	ENSGT00530000064199 #18	ENSGT00940000156404.vb.a #20	ENSGT00940000158216 #21	ENSGT00940000159292.k.a #22	ENSGT00390000015276 #23	ENSGT00940000155682.g.a #25	ENSGT00940000158179.b #27	ENSGT00940000157608.c #28	ENSGT00940000164537 #29	ENSGT00940000158179.a ##27	ENSGT00390000010672	ENSGT00390000006618 #30	ENSGT00940000157516 #31	ENSGT00940000163412.b #32	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000161051.a.a.a.a.b ##35	ENSGT00390000005911 #37	ENSGT00950000182942.a.b	ENSGT00940000164909.e.a.n
Oncorhynchus	ANCESTRAL SPECIES	13								ENSGT00390000002862.tb.o	ENSGT00390000002862.ub	ENSGT00940000155953.i.b.a	ENSGT00950000182883.b.a.a.h	ENSGT00950000182997.a.b.b.a.a.a #17	ENSGT00530000064199 #18	ENSGT00940000156404.vb.a #20	ENSGT00940000158216 #21	ENSGT00940000159292.k.a #22	ENSGT00390000015276 #23	ENSGT00940000155682.g.a #25	ENSGT00940000158179.b #27	ENSGT00940000157608.c #28	ENSGT00940000164537 #29	ENSGT00940000154200.A.b.b	ENSGT00940000160645.o.z	ENSGT00940000156083.j	ENSGT00940000158179.a ##27	ENSGT00390000010672	ENSGT00390000006618 #30	ENSGT00940000157516.h #31	ENSGT00940000163412.b #32	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000161051.a.a.a.a.b ##35
Rainbow trout	MODERN SPECIES	14												ENSOMYG00000037341 #21	ENSOMYG00000048970	ENSOMYG00000054764	ENSOMYG00000076657	ENSOMYG00000037492 #22	ENSOMYG00000058925 #23	ENSOMYG00000065923	ENSOMYG00000037817 #25	MARCHF4 (ENSOMYG00000037882) #27	ENSOMYG00000037908 #28	nme9 (ENSOMYG00000065544) #29	zgc:162707 (ENSOMYG00000037937) #30	ENSOMYG00000037959 #31	tmem41aa (ENSOMYG00000037320) #32	ENSOMYG00000076103 #35	ENSOMYG00000037308 ##35	ENSOMYG00000056838 #37	ENSOMYG00000054236	glb1l (ENSOMYG00000050634)	ENSOMYG00000065556
Oncorhynchus_a	ANCESTRAL SPECIES	121								ENSGT00390000002862.tb.o	ENSGT00390000002862.ub	ENSGT00940000155953.i.b.a	ENSGT00950000182883.b.a.a.h	ENSGT00950000182997.a.b.b.a.a.a #17	ENSGT00530000064199 #18	ENSGT00940000156404.vb.a #20	ENSGT00940000158216 #21	ENSGT00940000159292.k.a #22	ENSGT00390000015276 #23	ENSGT00940000155682.g.a #25	ENSGT00940000158179.b #27	ENSGT00940000157608.c #28	ENSGT00940000157563	ENSGT00940000154200.A.b.b	ENSGT00940000160645.o.z	ENSGT00940000156083.j	ENSGT00940000158179.a ##27	ENSGT00390000010672	ENSGT00390000006618 #30	ENSGT00940000157516.h #31	ENSGT00940000163412.b #32	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000161051.a.a.a.a.b ##35
Coho salmon	MODERN SPECIES	18								HNMT (ENSOKIG00005050022)	HNMT (ENSOKIG00005050021)	SPOPL (ENSOKIG00005050010)	NXPH2 (ENSOKIG00005050003)	DIP2A (ENSOKIG00005046947) #17	ENSOKIG00005046607 #18	trpm2 (ENSOKIG00005046558) #20	MAP3K13 (ENSOKIG00005046146) #21	PFKL (ENSOKIG00005045463) #22	TMEM169 (ENSOKIG00005045376) #23	COL6A2 (ENSOKIG00005045365) #25	MARCHF4 (ENSOKIG00005045359) #27	SMARCAL1 (ENSOKIG00005044589) #28	nme9 (ENSOKIG00005044513) #29	ENSOKIG00005044476	zgc:162707 (ENSOKIG00005044469) #30	ehhadh (ENSOKIG00005044438) #31	tmem41aa (ENSOKIG00005044428) #32	ENSOKIG00005044419 #35	ENSOKIG00005044414 ##35	ENSOKIG00005044402 #37	glb1l (ENSOKIG00005042882)	ENSOKIG00005042720	ENSOKIG00005041828
Chinook salmon	MODERN SPECIES	18	serpine3 (ENSOTSG00005045964)	ENSOTSG00005045965	ihha (ENSOTSG00005045966) #7	ptprna (ENSOTSG00005045967)	ENSOTSG00005045968	ENSOTSG00005045969	ENSOTSG00005045970	ENSOTSG00005045971	znf804a (ENSOTSG00005045976)	fn1a (ENSOTSG00005045983)	lap3 (ENSOTSG00005021784)	med28 (ENSOTSG00005021786)	glb1l (ENSOTSG00005021791)	ENSOTSG00005021793 #37	ENSOTSG00005021796 #21	PFKL (ENSOTSG00005021805) #22	TMEM169 (ENSOTSG00005021940) #23	COL6A2 (ENSOTSG00005021942) #25	ENSOTSG00005021946	SMARCAL1 (ENSOTSG00005021950) #28	nme9 (ENSOTSG00005021954) #29
Huchen	MODERN SPECIES	9027																PFKL (ENSHHUG00000003170) #22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000159292.k.b #22
Huchen	MODERN SPECIES	9547																ENSHHUG00000040195 #22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000159292.l #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000159292.l #22
Salmo	ANCESTRAL SPECIES	10								ENSGT00390000002862.tb.o	ENSGT00390000002862.ub	ENSGT00940000155953.i.a	ENSGT00950000182883.b.a.a.h	ENSGT00950000182997.a.b.b.a.b #17	ENSGT00530000064199 #18	ENSGT00940000156404.wb #20	ENSGT00940000158216 #21	ENSGT00940000159292.l #22	ENSGT00390000015276 #23	ENSGT00940000155682.g.a #25	ENSGT00940000158179.b #27	ENSGT00940000157608.c #28	ENSGT00940000164537 #29	ENSGT00390000006618.j #30	ENSGT00940000157516 #31	ENSGT00940000163412.b #32	ENSGT00940000161051.a.a.a.a.a #35	ENSGT00940000161051.a.a.a.a.b ##35	ENSGT00390000005911 #37	ENSGT00950000182942.a.b	ENSGT00940000164909.e.a.n	ENSGT00950000182895.a.b.u.b	ENSGT00940000158193
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	13						ENSSSAG00000055792	ENSSSAG00000116249	NXPH2 (ENSSSAG00000055735)	ENSSSAG00000103374	ENSSSAG00000098763	ENSSSAG00000055778 #17	ENSSSAG00000055957 #18	trpm2 (ENSSSAG00000055805) #20	ENSSSAG00000052832 #21	ENSSSAG00000108394	ENSSSAG00000052974 #22	tmem169 (ENSSSAG00000055574) #23	ENSSSAG00000090328 #25	ENSSSAG00000088521	MARCHF4 (ENSSSAG00000088114) #27	ENSSSAG00000121973	ENSSSAG00000098844 #28	ENSSSAG00000055971 #28	nme9 (ENSSSAG00000055739) #29	zgc:162707 (ENSSSAG00000093489) #30	ehhadh (ENSSSAG00000055724) #31	tmem41aa (ENSSSAG00000116676) #32	ENSSSAG00000111091 #35	ENSSSAG00000107082 ##35	ENSSSAG00000005556	ENSSSAG00000052812 #37
Atlantic salmon	MODERN SPECIES	470																ENSSSAG00000084706 #22
River trout	MODERN SPECIES	12								SPOPL (ENSSTUG00000011386)	ENSSTUG00000011465	hnmt (ENSSTUG00000011484)	NXPH2 (ENSSTUG00000011535)	DIP2A (ENSSTUG00000011791) #17	trpm2 (ENSSTUG00000023020) #20	ENSSTUG00000023243	ENSSTUG00000023264 #21	PFKL (ENSSTUG00000023683) #22	TMEM169 (ENSSTUG00000023867) #23	COL6A2 (ENSSTUG00000023881) #25	MARCHF4 (ENSSTUG00000023924) #27	SMARCAL1 (ENSSTUG00000023959) #28	nme9 (ENSSTUG00000025307) #29	zgc:162707 (ENSSTUG00000025467) #30	ehhadh (ENSSTUG00000025504) #31	tmem41aa (ENSSTUG00000025577) #32	ENSSTUG00000025585 #35	ENSSTUG00000025599 ##35	ENSSTUG00000025607 #37	glb1l (ENSSTUG00000025743)	ENSSTUG00000029245	ENSSTUG00000031323	ube2g2 (ENSSTUG00000031336)
Huchen	MODERN SPECIES	12670																ENSHHUG00000017353 #22
Otomorpha	ANCESTRAL SPECIES	508													ENSGT00390000011295.a.k #19	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000016988.a.a.a.a.b	ENSGT00940000156882	ENSGT00390000015276.h #23	ENSGT00530000064199.c #18
Otophysi	ANCESTRAL SPECIES	330														ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000016988.a.a.a.a.b	ENSGT00940000155037	ENSGT01100000263524.G.f.b	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000166218	ENSGT00740000117080	ENSGT00390000015276.g #23	ENSGT00940000153239.A #24	ENSGT00940000158179.b #27	ENSGT00940000157608 #28
Characiphysae	ANCESTRAL SPECIES	53	ENSGT00940000153969.b	ENSGT00940000165503	ENSGT00940000166532	ENSGT00940000157440.m.a	ENSGT00940000155324	ENSGT00940000159765	ENSGT00990000205434	ENSGT00940000158542.b	ENSGT00940000155890.a.a	ENSGT00940000155400.B	ENSGT00940000160626.b.e	ENSGT00940000164965	ENSGT00940000160626.b.f	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00740000117080	ENSGT00390000015276.g #23	ENSGT00940000153239.A #24	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000164537 #29	ENSGT00940000154574.d	ENSGT01060000248762	ENSGT00950000183184.a.a.a	ENSGT00940000154360.A.b.a	ENSGT00940000162768.B.a	ENSGT00940000158212.B	ENSGT00940000156702.a.a.b	ENSGT01040000240451.a.a.c	ENSGT00940000177166
Channel catfish	DUPLICATION
Channel catfish	MODERN SPECIES	1	ENSIPUG00000021416	aspscr1 (ENSIPUG00000021419)	notum (ENSIPUG00000021448)	tmc6 (ENSIPUG00000021463)	tmc8 (ENSIPUG00000021499)	ENSIPUG00000021525	syngr2b (ENSIPUG00000021531)	tk1 (ENSIPUG00000021545)	afmid (ENSIPUG00000021582)	cant1 (ENSIPUG00000021609)	ENSIPUG00000021621	si:dkey-93h22.8 (ENSIPUG00000021651)	ldb1b (ENSIPUG00000021664)	orc2 (ENSIPUG00000021681)	c10h21orf2 (ENSIPUG00000021692)	pfkl (ENSIPUG00000021701) #22	rpl37a (ENSIPUG00000021767)	eif4a3 (ENSIPUG00000021785)	opn6a (ENSIPUG00000021834)	STRN (ENSIPUG00000021850)	map1lc3c (ENSIPUG00000021896)	irf2bp2 (ENSIPUG00000021926)	ENSIPUG00000021929	tomm20b (ENSIPUG00000021935)	rbm34 (ENSIPUG00000021952)	tbce (ENSIPUG00000021983)	nid1 (ENSIPUG00000022017)	gpr137b (ENSIPUG00000022038)	ero1b (ENSIPUG00000022054)	ENSIPUG00000022099	ENSIPUG00000022109
Channel catfish	MODERN SPECIES	25	twist2 (ENSIPUG00000008180)	hdac4 (ENSIPUG00000008109)	LCT (ENSIPUG00000008064)	gjc1 (ENSIPUG00000008046)	ENSIPUG00000008025	ENSIPUG00000008011	slc4a3 (ENSIPUG00000007948)	igfbp2b (ENSIPUG00000007932)	Igfbp5 (ENSIPUG00000007915)	ENSIPUG00000007894	ENSIPUG00000007879	ENSIPUG00000007476	TNS1 (ENSIPUG00000007092)	trpm2 (ENSIPUG00000006994) #20	Map3k13 (ENSIPUG00000006876) #21	Pfkl (ENSIPUG00000006656) #22	tmem169 (ENSIPUG00000006621) #23	xrcc5 (ENSIPUG00000006528) #24	MARCHF4 (ENSIPUG00000006517) #27	smarcal1 (ENSIPUG00000006476) #28	nme9 (ENSIPUG00000006429) #29	ENSIPUG00000006405	dal1b (ENSIPUG00000006383)	ENSIPUG00000006357	FAM171B (ENSIPUG00000006308)	lrrc3 (ENSIPUG00000006296)	pcbp3 (ENSIPUG00000006238)	ENSIPUG00000006216	col18a1a (ENSIPUG00000006142)	ENSIPUG00000006043	ctdsp1 (ENSIPUG00000005990)
Characiphysae_b	ANCESTRAL SPECIES	119	ENSGT00530000063273.b.a.a	ENSGT00720000108822	ENSGT00940000153969.b	ENSGT00940000165503	ENSGT00940000166532	ENSGT00940000157440.m.a	ENSGT00940000155324	ENSGT00940000159765	ENSGT00990000205434	ENSGT00940000158542.b	ENSGT00940000155890.a.a	ENSGT00940000155400.B	ENSGT00940000160626.b.e	ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00740000117080	ENSGT00390000015276.g #23	ENSGT00940000153239.A #24	ENSGT00940000158179.b #27	ENSGT00940000157608 #28
Characoidei	ANCESTRAL SPECIES	43	ENSGT00940000155992.c.a	ENSGT00530000063273.b.a.a	ENSGT00720000108822	ENSGT00940000153969.b	ENSGT00940000165503	ENSGT00940000166532	ENSGT00940000157440.m.a	ENSGT00940000155324	ENSGT00940000159765	ENSGT00990000205434	ENSGT00940000158542.b	ENSGT00940000155890.a.a	ENSGT00940000155400.B	ENSGT00940000160626.b.e	ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00740000117080	ENSGT00390000015276.g #23	ENSGT00940000153239.A #24	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000164537 #29	ENSGT00940000154574.d	ENSGT01060000248762	ENSGT00950000183184.a.a.a	ENSGT00940000154360.A.b.a	ENSGT00940000162768.B.a	ENSGT00940000156702.a.a.b	ENSGT01040000240451.a.a.c	ENSGT00940000177166	ENSGT00940000163812
Mexicana tetra	DUPLICATION
Mexicana tetra	MODERN SPECIES	20	ENSAMXG00000025273	aspscr1 (ENSAMXG00000020425)	NOTUM (ENSAMXG00000020491)	TMC6 (ENSAMXG00000020529)	TMC8 (ENSAMXG00000020582)	ENSAMXG00000031343	syngr2b (ENSAMXG00000037996)	tk1 (ENSAMXG00000020703)	afmid (ENSAMXG00000039072)	cant1b (ENSAMXG00000043529)	ENSAMXG00000029086	si:dkey-93h22.8 (ENSAMXG00000020783)	ldb1b (ENSAMXG00000012067)	ENSAMXG00000020816	CFAP410 (ENSAMXG00000034889)	pfklb (ENSAMXG00000020865) #22	zgc:171772 (ENSAMXG00000041482)	eif4a3 (ENSAMXG00000020882)	opn6a (ENSAMXG00000020921)	ENSAMXG00000035494	strn (ENSAMXG00000021069)	map1lc3c (ENSAMXG00000043525)	ENSAMXG00000040813	irf2bp2b (ENSAMXG00000021316)	tomm20b (ENSAMXG00000042169)	rbm34 (ENSAMXG00000021328)	ENSAMXG00000040370	tbce (ENSAMXG00000021338)	NID1 (ENSAMXG00000021348)	GPR137B (ENSAMXG00000021361)	ero1b (ENSAMXG00000021371)
Mexicana tetra	MODERN SPECIES	10	hdac4 (ENSAMXG00000018271)	ENSAMXG00000034929	LCT (ENSAMXG00000018232)	gjc4b (ENSAMXG00000034738)	slc4a3 (ENSAMXG00000018140)	ENSAMXG00000034265	igfbp2b (ENSAMXG00000034029)	igfbp5b (ENSAMXG00000039094)	ENSAMXG00000029459	TNS1 (ENSAMXG00000018095)	ENSAMXG00000003102	ENSAMXG00000003162	ENSAMXG00000040917 #20	ENSAMXG00000031049 #20	MAP3K13 (ENSAMXG00000036910) #21	PFKL (ENSAMXG00000003245) #22	ENSAMXG00000040717	TMEM169 (ENSAMXG00000030420) #23	xrcc5 (ENSAMXG00000003290) #24	ENSAMXG00000035289	SMARCAL1 (ENSAMXG00000003350) #28	nme9 (ENSAMXG00000003365) #29	dap1b (ENSAMXG00000038801)	ENSAMXG00000036438	FAM171B (ENSAMXG00000003418)	lrrc3 (ENSAMXG00000025533)	pcbp3 (ENSAMXG00000003440)	col18a1a (ENSAMXG00000003496)	ENSAMXG00000003542	CTDSP1 (ENSAMXG00000003560)	ENSAMXG00000036704
Red-bellied piranha	DUPLICATION
Red-bellied piranha	MODERN SPECIES	649						gpc4 (ENSPNAG00000007885)	hs6st2 (ENSPNAG00000005289)	mbnl3 (ENSPNAG00000007910)	rap2c (ENSPNAG00000007924)	zgc:92907 (ENSPNAG00000007933)	il2rgb (ENSPNAG00000007954)	ENSPNAG00000007957	ldb1b (ENSPNAG00000000573)	ORC2 (ENSPNAG00000007996)	ENSPNAG00000008005	pfklb (ENSPNAG00000008024) #22	zgc:171772 (ENSPNAG00000000609)	eif4a3 (ENSPNAG00000008053)	opn6a (ENSPNAG00000008071)	ENSPNAG00000000647	ENSPNAG00000000652	ENSPNAG00000008090
Red-bellied piranha	MODERN SPECIES	19	asb1 (ENSPNAG00000013817)	ENSPNAG00000013829	twist2 (ENSPNAG00000013851)	hdac4 (ENSPNAG00000013918)	LCT (ENSPNAG00000013965)	gjc4b (ENSPNAG00000013983)	slc4a3 (ENSPNAG00000014116)	ENSPNAG00000003033	igfbp2b (ENSPNAG00000014168)	igfbp5b (ENSPNAG00000014198)	ENSPNAG00000014214	ENSPNAG00000014283	TNS1 (ENSPNAG00000014447)	trpm2 (ENSPNAG00000014493) #20	MAP3K13 (ENSPNAG00000014567) #21	PFKL (ENSPNAG00000003197) #22	TMEM169 (ENSPNAG00000014643) #23	xrcc5 (ENSPNAG00000014874) #24	MARCHF4 (ENSPNAG00000014886) #27	SMARCAL1 (ENSPNAG00000014900) #28	nme9 (ENSPNAG00000014972) #29	ENSPNAG00000014988	ENSPNAG00000014996	ENSPNAG00000015007	ENSPNAG00000015023	lrrc3 (ENSPNAG00000015032)	pcbp3 (ENSPNAG00000015104)	col18a1a (ENSPNAG00000015167)	ENSPNAG00000015299	ENSPNAG00000005458	ENSPNAG00000015332
Electric eel	DUPLICATION
Electric eel	MODERN SPECIES	762	pycr1b (ENSEEEG00000021691)	ENSEEEG00000021706	aspscr1 (ENSEEEG00000021708)	ENSEEEG00000021711	TMC6 (ENSEEEG00000021714)	TMC8 (ENSEEEG00000021775)	ENSEEEG00000021779	syngr2b (ENSEEEG00000021783)	tk1 (ENSEEEG00000021784)	afmid (ENSEEEG00000021787)	cant1b (ENSEEEG00000021788)	ENSEEEG00000021789	ldb1b (ENSEEEG00000021792)	ORC2 (ENSEEEG00000021798)	ENSEEEG00000021815	pfklb (ENSEEEG00000021830) #22
Electric eel	MODERN SPECIES	160	ENSEEEG00000019335	ENSEEEG00000019336	ENSEEEG00000019337	ENSEEEG00000019338	ehmt1a (ENSEEEG00000019369)	ARRDC1 (ENSEEEG00000020119)	ENSEEEG00000020123	nelfb (ENSEEEG00000020125)	entpd2a.1 (ENSEEEG00000020135)	grin1b (ENSEEEG00000020142)	ENSEEEG00000020194	ENSEEEG00000020202	ENSEEEG00000020317	trpm2 (ENSEEEG00000020460) #20	MAP3K13 (ENSEEEG00000020470) #21	PFKL (ENSEEEG00000020490) #22	TMEM169 (ENSEEEG00000020790) #23	xrcc5 (ENSEEEG00000020811) #24	MARCHF4 (ENSEEEG00000020907) #27	SMARCAL1 (ENSEEEG00000020918) #28	nme9 (ENSEEEG00000021056) #29	dap1b (ENSEEEG00000021057)	hnmt (ENSEEEG00000021060)	ENSEEEG00000021061	ENSEEEG00000021062
Cyprinoidei	DUPLICATION
Cyprinoidei	DUPLICATION
Cyprinoidei	ANCESTRAL SPECIES	214														ENSGT00940000156404 #20	ENSGT00940000158216 #21	ENSGT00940000159292.u.a #22	ENSGT00740000117080	ENSGT00390000015276.g #23	ENSGT00940000153239.A #24	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00940000164537 #29	ENSGT00940000177866
Cyprininae	ANCESTRAL SPECIES	257										ENSGT01090000259985.b.b.b.a.b.x	ENSGT01090000259985.b.a.a.b.e.b	ENSGT00940000156404.`c #20	ENSGT00940000158216.c #21	ENSGT00940000156404.ac #20	ENSGT00940000158216.d #21	ENSGT00940000159292.u.a #22	ENSGT00390000015276.g.a #23	ENSGT00940000153239.A.e #24	ENSGT00940000158179.b.b #27	ENSGT00940000177394	ENSGT00940000164537.d #29	ENSGT00940000154574.d.m.a	ENSGT00940000155655.B.i.b	ENSGT00940000157230.a	ENSGT00940000155359.w.a	ENSGT01050000244842.a.b.a.p.b	ENSGT00940000156082.a.a.a	ENSGT00390000008712.d.b	ENSGT00940000156972.c.b	ENSGT00940000165362.c	ENSGT00940000153173.b.a.c
Goldfish	MODERN SPECIES	27	ENSCARG00000039178	scn1laa (ENSCARG00000039106)	ENSCARG00000039078	GRB14 (ENSCARG00000038548)	fign (ENSCARG00000038528)	KCNH7 (ENSCARG00000038518)	ifih1 (ENSCARG00000038452)	ENSCARG00000031998	gcgb (ENSCARG00000031835)	ENSCARG00000031830	RBMS1 (ENSCARG00000031282)	tank (ENSCARG00000031227)	tbr1b (ENSCARG00000031205)	SLC4A10 (ENSCARG00000030844)	ENSCARG00000030087 #21	PFKL (ENSCARG00000028416) #22	TMEM169 (ENSCARG00000028312) #23	MARCHF4 (ENSCARG00000028291) #27	ENSCARG00000028282	SMARCAL1 (ENSCARG00000028229) #28	nme9 (ENSCARG00000028145) #29	ENSCARG00000028133	TANC1 (ENSCARG00000027237)	ENSCARG00000027138	trpm2 (ENSCARG00000026665) #20	ENSCARG00000026636	ENSCARG00000026626	ENSCARG00000026621	sox21b (ENSCARG00000026619)	gpc6b (ENSCARG00000026614)	ENSCARG00000026607
Cyprininae_a	ANCESTRAL SPECIES	67	ENSGT00940000155821.c.a.c	ENSGT00390000015682.n	ENSGT01100000263512.a.a.a.b.a.b.a	ENSGT00480000042679.b.a.c	ENSGT00940000155219.hb.b.a	ENSGT00940000165888.e.a	ENSGT00940000158453.b.a	ENSGT01050000244897.a.b.b.a.a.d	ENSGT00940000156856.b	ENSGT00940000162795.c.a	ENSGT01090000259985.b.b.b.a.b.w	ENSGT01090000259985.b.a.a.b.e.a	ENSGT01090000259985.b.a.a.a	ENSGT00940000156404.ac #20	ENSGT00940000158216.d #21	ENSGT00940000159292.u.a #22	ENSGT00390000015276.g.b #23	ENSGT00940000153239.A.f #24	ENSGT00940000158179.b.a #27	ENSGT00940000157608 #28	ENSGT00940000164537.c #29	ENSGT00940000154574.d.m.b	ENSGT00940000155655.B.i.a	ENSGT00940000155359.w.a.f	ENSGT01050000244842.a.b.a.p.a	ENSGT00940000156082.a.a.b	ENSGT00390000008712.d.a	ENSGT00940000156972.c.a	ENSGT00390000005372.e	ENSGT00940000165362.d	ENSGT00940000153173.b.a.d
Golden-line barbel	MODERN SPECIES	1180															ENSSGRG00000039685 #21	PFKL (ENSSGRG00000039710) #22	MARCHF9 (ENSSGRG00000040480)	SMARCAL1 (ENSSGRG00000040490) #28	nme9 (ENSSGRG00000040776) #29	ENSSGRG00000040780
Zebrafish	MODERN SPECIES	24	EDNRB (ENSDARG00000053498)	cnmd (ENSDARG00000100133)	PCDH8 (ENSDARG00000102185)	pcdh8 (ENSDARG00000006467)	ENSDARG00000111522	ENSDARG00000074153	gpc6b (ENSDARG00000104219)	dct (ENSDARG00000006008)	sox21b (ENSDARG00000008540)	ENSDARG00000088672	ENSDARG00000090844	ENSDARG00000101527	trpm2 (ENSDARG00000101641) #20	ENSDARG00000099404	MAP3K13 (ENSDARG00000009493) #21	PFKL (ENSDARG00000060504) #22	ENSDARG00000101774	TMEM169 (ENSDARG00000078762) #23	xrcc5 (ENSDARG00000099298) #24	marchf4 (ENSDARG00000056439) #27	ENSDARG00000102265 #28	nme9 (ENSDARG00000098944) #29	ENSDARG00000109678	dap1b (ENSDARG00000086842)	TANC1 (ENSDARG00000089190)	ENSDARG00000098110	ENSDARG00000086100	ENSDARG00000103823	tank (ENSDARG00000067723)	tbr1b (ENSDARG00000004712)	SLC4A10 (ENSDARG00000060303)
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00940000159292.u.b #22
Cyprininae	ANCESTRAL SPECIES	476												ENSGT01000000219139	ENSGT00390000005639.a.b.d.b.a.a	ENSGT00390000015228	ENSGT00390000018807	ENSGT00940000159292.u.b #22	ENSGT00940000166218.d	ENSGT00940000160591.a.a.b	ENSGT00390000011698.c.a.b.n	ENSGT00390000011249	ENSGT00530000063405.a	ENSGT00390000007753.a	ENSGT00940000162556.A.b.g	ENSGT00390000013727.d.a.b	ENSGT01000000214413.b.a.a.q.a.b.a	ENSGT00940000155212.ab.a.d	ENSGT00390000005717.s	ENSGT00940000164897.a.b.f	ENSGT00940000158265	ENSGT00940000154817.b.b.b.p.a	ENSGT00940000170852
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00940000159292.u.b #22
Golden-line barbel	MODERN SPECIES	945			mafgb (ENSSGRG00000006793)	pycr1b (ENSSGRG00000006795)	aspscr1 (ENSSGRG00000006871)	NOTUM (ENSSGRG00000006886)	ENSSGRG00000006934	ENSSGRG00000006935	ENSSGRG00000006936	syngr2b (ENSSGRG00000006939)	afmid (ENSSGRG00000006943)	cant1b (ENSSGRG00000006954)	si:dkey-93h22.8 (ENSSGRG00000006956)	ORC2 (ENSSGRG00000006959)	ENSSGRG00000006963	ENSSGRG00000006966 #22
Cyprinoidei	ANCESTRAL SPECIES	27	ENSGT00940000156853	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a	ENSGT01050000244894.a.a.a.b	ENSGT00530000069282.A	ENSGT00530000069282.B	ENSGT00950000182935.B.a.c	ENSGT00390000011309	ENSGT00390000011093	ENSGT00390000012872.b	ENSGT00390000007726.a.b	ENSGT00950000183137.a.l	ENSGT00390000005639.a.b.d.b	ENSGT00390000015228	ENSGT00390000018807	ENSGT00940000159292.v #22	ENSGT00390000016988.a.a.a.a.b	ENSGT00940000155037	ENSGT01100000263524.G.f.b	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000166218	ENSGT00940000160591.a.a	ENSGT00390000011698.c.a.b	ENSGT00390000011249	ENSGT00530000063405.a	ENSGT00390000007753.a	ENSGT01100000263538.A.a.a.b.b	ENSGT00390000013727.d.a	ENSGT01000000214413.b.a.a.q.a	ENSGT00940000155212.ab.a	ENSGT00390000005717.s
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	884																ENSGT00940000159292.v.a #22	ENSGT00390000016988.a.a.a.a.b	ENSGT00940000155037	ENSGT01100000263524.G.f.b	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000166218.c.b	ENSGT00940000160591.a.a.a
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	29	ENSCARG00000008059	ENSCARG00000008076	tk1 (ENSCARG00000008098)	syngr2b (ENSCARG00000008195)	TMC6 (ENSCARG00000008227)	aspscr1 (ENSCARG00000008242)	pycr1b (ENSCARG00000008261)	mafgb (ENSCARG00000008276)	ENSCARG00000008284	srsf11 (ENSCARG00000008296)	ankrd13c (ENSCARG00000008306)	plaat1 (ENSCARG00000008320)	GEMIN6 (ENSCARG00000008335)	ENSCARG00000008339	HNRNPLL (ENSCARG00000008353)	pfklb (ENSCARG00000008416) #22	zgc:171772 (ENSCARG00000009165)	eif4a3 (ENSCARG00000009191)	opn6a (ENSCARG00000009273)	strn (ENSCARG00000009293)	map1lc3c (ENSCARG00000009524)	irf2bp2b (ENSCARG00000009545)	tomm20b (ENSCARG00000009550)	ENSCARG00000009555	GEMIN6 (ENSCARG00000009568)	HNRNPLL (ENSCARG00000009600)	ATL2 (ENSCARG00000010128)	LOXL4 (ENSCARG00000011112)	ENSCARG00000011134	FILIP1L (ENSCARG00000011137)	ENSCARG00000011143
Goldfish	MODERN SPECIES	2794																pfklb (ENSCARG00000067024) #22	zgc:171772 (ENSCARG00000066984)	eif4a3 (ENSCARG00000066646)	opn6a (ENSCARG00000066614)	strn (ENSCARG00000065915)	map1lc3c (ENSCARG00000065886)	ENSCARG00000065881	irf2bp2b (ENSCARG00000065858)
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00940000159292.v.a #22
Common carp reference	MODERN SPECIES	42	srsf11 (ENSCCRG00000022067)	ENSCCRG00000076299	ENSCCRG00000007058	mafgb (ENSCCRG00000066606)	pycr1b (ENSCCRG00000054963)	aspscr1 (ENSCCRG00000065331)	TMC6 (ENSCCRG00000051089)	TMC8 (ENSCCRG00000072909)	ENSCCRG00000073842	syngr2b (ENSCCRG00000036364)	tk1 (ENSCCRG00000047295)	cant1b (ENSCCRG00000015933)	ENSCCRG00000007932	si:dkey-93h22.8 (ENSCCRG00000074641)	ldb1b (ENSCCRG00000001723)	ENSCCRG00000021896 #22	ENSCCRG00000021891	eif4a3 (ENSCCRG00000021882)	strn (ENSCCRG00000063952)	map1lc3c (ENSCCRG00000066718)	irf2bp2b (ENSCCRG00000075369)	tomm20b (ENSCCRG00000024546)	tbce (ENSCCRG00000067190)	ENSCCRG00000002529	ENSCCRG00000069883	ENSCCRG00000063152	ENSCCRG00000065769	ENSCCRG00000067712	ENSCCRG00000064967	ENSCCRG00000056853	ENSCCRG00000079577
Cyprininae	ANCESTRAL SPECIES																	ENSGT00940000159292.v.b #22
Cyprininae_a	ANCESTRAL SPECIES	348		ENSGT00940000156853.r	ENSGT00390000015892.a	ENSGT01050000244894.b.b.d.a.c	ENSGT01050000244894.a.a.a.b.i	ENSGT00950000182935.B.a.c.a	ENSGT00390000011309.p	ENSGT00390000011093	ENSGT00390000012872.b.a	ENSGT00950000183137.a.l	ENSGT00390000005639.a.b.d.b.b	ENSGT01000000219139	ENSGT00390000005639.a.b.d.b.a.a	ENSGT00390000015228	ENSGT00390000018807	ENSGT00940000159292.v.b #22	ENSGT01100000263476.E.b.a.a.a.a.b.b	ENSGT00390000016988.a.a.a.a.b	ENSGT00940000155037	ENSGT01100000263524.G.f.b	ENSGT00950000183095.a.b.a.b.b.a.a	ENSGT00940000166218.d	ENSGT00940000166218.c.a	ENSGT00940000160591.a.a.b	ENSGT00390000011698.c.a.b.n	ENSGT00390000011249	ENSGT00530000063405.a.ab	ENSGT00940000156318.b.b.m	ENSGT00940000156318.b.b.n	ENSGT00940000153986.b.a.u.b
Common carp reference	MODERN SPECIES	13	mafgb (ENSCCRG00000071085)	pycr1b (ENSCCRG00000075302)	ENSCCRG00000053033	aspscr1 (ENSCCRG00000007078)	ENSCCRG00000007086	ENSCCRG00000049618	ENSCCRG00000039806	ENSCCRG00000057342	ENSCCRG00000036411	tk1 (ENSCCRG00000036374)	ENSCCRG00000038287	ldb1b (ENSCCRG00000075309)	ENSCCRG00000067968	ENSCCRG00000045296	ENSCCRG00000031895	pfklb (ENSCCRG00000031972) #22	ENSCCRG00000047598	ENSCCRG00000010733	zgc:171772 (ENSCCRG00000010731)	eif4a3 (ENSCCRG00000021863)	opn6a (ENSCCRG00000075563)	strn (ENSCCRG00000044182)	map1lc3c (ENSCCRG00000066841)	irf2bp2b (ENSCCRG00000072833)	tomm20b (ENSCCRG00000061925)	rbm34 (ENSCCRG00000011466)	tbce (ENSCCRG00000003697)	ENSCCRG00000018986	ENSCCRG00000082110	ENSCCRG00000016221	ENSCCRG00000012752
Golden-line barbel	MODERN SPECIES	957									ENSSGRG00000026809	ENSSGRG00000026805	ENSSGRG00000026802	ENSSGRG00000026797	sgms2b (ENSSGRG00000026795)	sgms2b (ENSSGRG00000026793)	ENSSGRG00000026792	pfklb (ENSSGRG00000026791) #22	ENSSGRG00000026773	eif4a3 (ENSSGRG00000024684)	strn (ENSSGRG00000024154)	map1lc3c (ENSSGRG00000024128)	irf2bp2b (ENSSGRG00000024127)	tomm20b (ENSSGRG00000024115)	rbm34 (ENSSGRG00000024109)	tbce (ENSSGRG00000024100)	ENSSGRG00000024096	ero1b (ENSSGRG00000024090)
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	2	ENSCARG00000011122	afmid (ENSCARG00000011089)	cant1b (ENSCARG00000011081)	sos1 (ENSCARG00000011053)	ENSCARG00000011046	ENSCARG00000011023	ENSCARG00000011016	HNRNPLL (ENSCARG00000010964)	srsf7b (ENSCARG00000010916)	GEMIN6 (ENSCARG00000010891)	TRAPPC10 (ENSCARG00000010871)	srsf11 (ENSCARG00000010858)	ankrd13c (ENSCARG00000010823)	ORC2 (ENSCARG00000010474)	CFAP410 (ENSCARG00000010452)	pfklb (ENSCARG00000009473) #22	ENSCARG00000009390	eif4a3 (ENSCARG00000009233)	opn6a (ENSCARG00000009217)	strn (ENSCARG00000008045)	sos1 (ENSCARG00000004994)	rfc4 (ENSCARG00000004810)	ldb1b (ENSCARG00000004487)	ENSCARG00000004412	cant1b (ENSCARG00000004397)	afmid (ENSCARG00000004378)	tk1 (ENSCARG00000004327)	syngr2b (ENSCARG00000004315)	ENSCARG00000004304	TMC8 (ENSCARG00000004260)	TMC6 (ENSCARG00000004219)
Goldfish	MODERN SPECIES	2	tk1 (ENSCARG00000004327)	syngr2b (ENSCARG00000004315)	ENSCARG00000004304	TMC8 (ENSCARG00000004260)	TMC6 (ENSCARG00000004219)	NOTUM (ENSCARG00000003858)	aspscr1 (ENSCARG00000003726)	ENSCARG00000003689	pycr1b (ENSCARG00000003650)	mafgb (ENSCARG00000003636)	TRAPPC10 (ENSCARG00000003622)	srsf11 (ENSCARG00000003612)	ankrd13c (ENSCARG00000003604)	ORC2 (ENSCARG00000003597)	ENSCARG00000003586	pfklb (ENSCARG00000003509) #22	ENSCARG00000003488	zgc:171772 (ENSCARG00000003479)	eif4a3 (ENSCARG00000003203)	opn6a (ENSCARG00000003153)	strn (ENSCARG00000003121)	prickle2b (ENSCARG00000003106)	slc2a9l1 (ENSCARG00000003090)	psmd6 (ENSCARG00000003077)	qrich1 (ENSCARG00000003017)	rpusd4 (ENSCARG00000003006)	tax1bp3 (ENSCARG00000002994)	nr2f6b (ENSCARG00000002987)	ENSCARG00000002982	ENSCARG00000002965	arrdc2 (ENSCARG00000002931)
Zebrafish	MODERN SPECIES	2	aspscr1 (ENSDARG00000105321)	notum1b (ENSDARG00000117145)	ENSDARG00000004875	TMC8 (ENSDARG00000101050)	ENSDARG00000101146	ENSDARG00000099600	syngr2b (ENSDARG00000104470)	tk1 (ENSDARG00000102245)	afmid (ENSDARG00000099106)	cant1b (ENSDARG00000102977)	ENSDARG00000103266	si:dkey-93h22.8 (ENSDARG00000098666)	ldb1b (ENSDARG00000103158)	ENSDARG00000101465	CFAP410 (ENSDARG00000099397)	pfklb (ENSDARG00000099755) #22	zgc:171772 (ENSDARG00000115271)	eif4a3 (ENSDARG00000102978)	opn6a (ENSDARG00000102430)	strn (ENSDARG00000100011)	map1lc3c (ENSDARG00000100528)	irf2bp2b (ENSDARG00000098635)	tomm20b (ENSDARG00000103566)	rbm34 (ENSDARG00000101877)	tbce (ENSDARG00000099921)	NID1 (ENSDARG00000103129)	ENSDARG00000077608	ero1b (ENSDARG00000103915)	ENSDARG00000105317	mfn1b (ENSDARG00000079219)	il1rapl1b (ENSDARG00000104853)
Clupeiformes	ANCESTRAL SPECIES	271															ENSGT00940000158216 #21	ENSGT00940000159292 #22	ENSGT00390000015276.g #23	ENSGT00940000153239.A #24	ENSGT00940000155682.g.a #25	ENSGT00940000158179.b #27	ENSGT00940000157608 #28	ENSGT00950000182905.a.a.a.a.a.a	ENSGT00390000017724.a.b	ENSGT00940000164632.a	ENSGT00940000153568.B	ENSGT00940000165301.a	ENSGT00390000011515	ENSGT00940000154817.b.a	ENSGT00940000159158	ENSGT00390000013973.A.a.c.a	ENSGT00940000159213.q.a
Denticle herring	MODERN SPECIES	15	ENSDCDG00000000309	ENSDCDG00000000337	ENSDCDG00000000374	ENSDCDG00000000403	ENSDCDG00000000412	FGF14 (ENSDCDG00000000421)	mettl21a (ENSDCDG00000000427)	ENSDCDG00000000432	mdh1b (ENSDCDG00000000441)	retreg2 (ENSDCDG00000000460)	ENSDCDG00000000512	cflara (ENSDCDG00000000549) #18	tmem169a (ENSDCDG00000000559) #23	pecr (ENSDCDG00000000562)	zgc:171772 (ENSDCDG00000000568)	pfklb (ENSDCDG00000000691) #22	ENSDCDG00000000854	ORC2 (ENSDCDG00000000865)	cep70 (ENSDCDG00000000891)	septin10 (ENSDCDG00000000991)	SOWAHC (ENSDCDG00000001263)	ENSDCDG00000001270	ENSDCDG00000001276	ENSDCDG00000001296	ENSDCDG00000001311	crygmxl1 (ENSDCDG00000001315)	ENSDCDG00000001325	ENSDCDG00000001326	HSPD1 (ENSDCDG00000001331)	MOB4 (ENSDCDG00000001336)	ENSDCDG00000001341
Atlantic herring	DUPLICATION
Atlantic herring	MODERN SPECIES	13	COL8A1 (ENSCHAG00000025869)	FILIP1L (ENSCHAG00000025866)	il1rapl1b (ENSCHAG00000025857)	nr0b1 (ENSCHAG00000025855)	ENSCHAG00000025780	plekha3 (ENSCHAG00000025752)	TRAPPC10 (ENSCHAG00000025593)	tdo2b (ENSCHAG00000025566)	COL6A1 (ENSCHAG00000025541)	ENSCHAG00000025533	COL6A2 (ENSCHAG00000025523) ##25	zgc:162816 (ENSCHAG00000025509)	ENSCHAG00000025484 #19	ORC2 (ENSCHAG00000025460)	ENSCHAG00000025426	pfklb (ENSCHAG00000020487) #22	zgc:171772 (ENSCHAG00000020336)	pecr (ENSCHAG00000020300)	tmem169a (ENSCHAG00000020298) #23	cflara (ENSCHAG00000020288) #18	PRKAG3 (ENSCHAG00000020132)	retreg2 (ENSCHAG00000020120)	ENSCHAG00000020080	mdh1b (ENSCHAG00000020010)	ENSCHAG00000020001	gtf3c3 (ENSCHAG00000019562)	HECW2 (ENSCHAG00000018190)	klf7a (ENSCHAG00000018122)	si:ch211-93g23.2 (ENSCHAG00000018114)	ube2f (ENSCHAG00000018073)	RAMP1 (ENSCHAG00000018064)
Atlantic herring	MODERN SPECIES	11	sp5a (ENSCHAG00000024253)	MYO3B (ENSCHAG00000024293)	ubr3 (ENSCHAG00000024934)	ENSCHAG00000025642	ENSCHAG00000025644	ENSCHAG00000025647	ENSCHAG00000025648	ENSCHAG00000025649	ENSCHAG00000025651	fastkd1 (ENSCHAG00000025657)	ENSCHAG00000025672	ENSCHAG00000025678	klhl41a (ENSCHAG00000025685)	bbs5 (ENSCHAG00000025692)	MAP3K13 (ENSCHAG00000025697) #21	PFKL (ENSCHAG00000025736) #22	TMEM169 (ENSCHAG00000026055) #23	xrcc5 (ENSCHAG00000026084) #24	COL6A2 (ENSCHAG00000026301) #25	MARCHF4 (ENSCHAG00000026307) #27	SMARCAL1 (ENSCHAG00000026312) #28	nme9 (ENSCHAG00000026379) #29	ENSCHAG00000026409	zgc:162707 (ENSCHAG00000026414) #30	cyp27a3 (ENSCHAG00000026417)	eaf2 (ENSCHAG00000026429)	tsn (ENSCHAG00000000137)	ENSCHAG00000000161	nifk (ENSCHAG00000000181)	ENSCHAG00000000202	nifk (ENSCHAG00000000229)