Mus_A	ANCESTRAL SPECIES		ENSGT00950000182870.a.b	ENSGT00950000182870.b	ENSGT00990000206984	ENSGT00950000183158.D.b.f	ENSGT00390000018390	ENSGT00940000158030	ENSGT00940000154412.B.b	ENSGT00940000157397	ENSGT01030000234532.A.b	ENSGT00940000159303	ENSGT00390000019406 #17	ENSGT00510000047812 #18	ENSGT00940000157545 #19	ENSGT00390000009277 #20	ENSGT00940000160700 #21	ENSGT00390000011613 #22	ENSGT00390000016025.b.h #23	ENSGT00940000159452	ENSGT00940000161792	ENSGT00390000008240.m	ENSGT00390000008240.n	ENSGT00940000160291	ENSGT00550000074781	ENSGT00390000012336	ENSGT00940000160707.b	ENSGT00690000102227	ENSGT00520000055649.b	ENSGT00390000016791	ENSGT00390000018400	ENSGT01040000240503.A.a.a	ENSGT00530000063675.a
Mus_B	ANCESTRAL SPECIES	1	ENSGT00950000182870.a.b	ENSGT00950000182870.b	ENSGT00990000206984	ENSGT00950000183158.D.b.f	ENSGT00390000018390	ENSGT00940000158030	ENSGT00940000154412.B.b	ENSGT00940000157397.s	ENSGT01030000234532.A.b	ENSGT00940000159303	ENSGT00390000019406 #17	ENSGT00510000047812 #18	ENSGT00940000157545 #19	ENSGT00390000009277 #20	ENSGT00940000160700 #21	ENSGT00390000011613 #22	ENSGT00390000016025.b.h.e.b ##23	ENSGT00940000159452	ENSGT00940000161792	ENSGT00390000008240.m	ENSGT00390000008240.n	ENSGT00940000160291	ENSGT00550000074781	ENSGT00390000012336	ENSGT00940000160707.b	ENSGT00690000102227	ENSGT00520000055649.b	ENSGT00390000016791	ENSGT00390000018400	ENSGT01040000240503.A.a.a.m	ENSGT00530000063675.a
Mus_C	ANCESTRAL SPECIES		ENSGT00950000182870.a.b	ENSGT00950000182870.b	ENSGT00990000206984	ENSGT00950000183158.D.b.f	ENSGT00390000018390	ENSGT00940000158030	ENSGT00940000154412.B.b	ENSGT00940000157397.s	ENSGT01030000234532.A.b	ENSGT00940000159303	ENSGT00390000019406 #17	ENSGT00510000047812 #18	ENSGT00940000157545 #19	ENSGT00390000009277 #20	ENSGT00940000160700 #21	ENSGT00390000011613 #22	ENSGT00390000016025.b.h.f #23	ENSGT00390000016025.b.h.e.a ##23	ENSGT00940000159452	ENSGT00940000161792	ENSGT00390000008240.m	ENSGT00390000008240.n	ENSGT00940000160291	ENSGT00550000074781	ENSGT00390000012336	ENSGT00940000160707.b	ENSGT00690000102227	ENSGT00520000055649.b	ENSGT00390000016791	ENSGT00390000018400	ENSGT01040000240503.A.a.a.m
Steppe mouse	MODERN SPECIES	2164											Sqor (ENSMSIG00000020464) #17	Bloc1s6 (ENSMSIG00000020442) #18	Slc30a4 (ENSMSIG00000020400) #19	AA467197 (ENSMSIG00000020373) #20	Spata5l1 (ENSMSIG00000020360) #21	Gatm (ENSMSIG00000020334) #22	ENSMSIG00000019812 #23
spretus	MODERN SPECIES	11	Shc4 (MGP_SPRETEiJ_G0025149)	Cep152 (MGP_SPRETEiJ_G0025148)	MGP_SPRETEiJ_G0025147	Fbn1 (MGP_SPRETEiJ_G0025146)	Dut (MGP_SPRETEiJ_G0025145)	Slc12a1 (MGP_SPRETEiJ_G0025144)	Ctxn2 (MGP_SPRETEiJ_G0025143)	MGP_SPRETEiJ_G0025142	Myef2 (MGP_SPRETEiJ_G0025141)	Slc24a5 (MGP_SPRETEiJ_G0025140)	Sema6d (MGP_SPRETEiJ_G0025139)	Sqor (MGP_SPRETEiJ_G0025138) #17	Bloc1s6 (MGP_SPRETEiJ_G0025137) #18	Slc30a4 (MGP_SPRETEiJ_G0025136) #19	AA467197 (MGP_SPRETEiJ_G0025135) #20	Gatm (MGP_SPRETEiJ_G0025134) #22	Slc28a2 (MGP_SPRETEiJ_G0025133) ##23	Slc28a2b (MGP_SPRETEiJ_G0025132) ##23	Shf (MGP_SPRETEiJ_G0025131)	Duox1 (MGP_SPRETEiJ_G0025130)	Duoxa1 (MGP_SPRETEiJ_G0025129)	Duoxa2 (MGP_SPRETEiJ_G0025128)	Duox2 (MGP_SPRETEiJ_G0025127)	Sord (MGP_SPRETEiJ_G0025126)	Terb2 (MGP_SPRETEiJ_G0025125)	Trim69 (MGP_SPRETEiJ_G0025124)	B2m (MGP_SPRETEiJ_G0025123)	Patl2 (MGP_SPRETEiJ_G0025122)	Spg11 (MGP_SPRETEiJ_G0025121)	MGP_SPRETEiJ_G0025120	Ctdspl2 (MGP_SPRETEiJ_G0025118)
Mouse	MODERN SPECIES	11	Eid1 (ENSMUSG00000091337)	Shc4 (ENSMUSG00000035109)	Cep152 (ENSMUSG00000068394)	Fbn1 (ENSMUSG00000027204)	Dut (ENSMUSG00000027203)	Slc12a1 (ENSMUSG00000027202)	Ctxn2 (ENSMUSG00000074872)	Myef2 (ENSMUSG00000027201)	Slc24a5 (ENSMUSG00000035183)	Sema6d (ENSMUSG00000027200)	Sqor (ENSMUSG00000005803) #17	Bloc1s6 (ENSMUSG00000005804) #18	Slc30a4 (ENSMUSG00000005802) #19	AA467197 (ENSMUSG00000033213) #20	Spata5l1 (ENSMUSG00000118663) #21	Gatm (ENSMUSG00000027199) #22	Slc28a2b (ENSMUSG00000079071) ##23	Slc28a2 (ENSMUSG00000027219) ##23	Shf (ENSMUSG00000033256)	Duox1 (ENSMUSG00000033268)	Duoxa1 (ENSMUSG00000027224)	Duoxa2 (ENSMUSG00000027225)	Duox2 (ENSMUSG00000068452)	Sord (ENSMUSG00000027227)	Terb2 (ENSMUSG00000027229)	Trim69 (ENSMUSG00000033368)	B2m (ENSMUSG00000060802)	Patl2 (ENSMUSG00000027233)	Spg11 (ENSMUSG00000033396)	Eif3j1 (ENSMUSG00000027236)	Ctdspl2 (ENSMUSG00000033411)
Ryukyu mouse	MODERN SPECIES	11	Eid1 (MGP_CAROLIEiJ_G0024230)	Shc4 (MGP_CAROLIEiJ_G0024229)	Cep152 (MGP_CAROLIEiJ_G0024228)	MGP_CAROLIEiJ_G0024227	Fbn1 (MGP_CAROLIEiJ_G0024226)	Dut (MGP_CAROLIEiJ_G0024225)	Slc12a1 (MGP_CAROLIEiJ_G0024224)	Ctxn2 (MGP_CAROLIEiJ_G0024223)	MGP_CAROLIEiJ_G0024222	Slc24a5 (MGP_CAROLIEiJ_G0024221)	Sema6d (MGP_CAROLIEiJ_G0024220)	Sqor (MGP_CAROLIEiJ_G0024219) #17	Bloc1s6 (MGP_CAROLIEiJ_G0024218) #18	Slc30a4 (MGP_CAROLIEiJ_G0024217) #19	AA467197 (MGP_CAROLIEiJ_G0024216) #20	Gatm (MGP_CAROLIEiJ_G0024215) #22	Shf (MGP_CAROLIEiJ_G0024214)	Duox1 (MGP_CAROLIEiJ_G0024213)	Duoxa1 (MGP_CAROLIEiJ_G0024212)	Duoxa2 (MGP_CAROLIEiJ_G0024211)	Duox2 (MGP_CAROLIEiJ_G0024210)	Sord (MGP_CAROLIEiJ_G0024209)	Terb2 (MGP_CAROLIEiJ_G0024208)	Trim69 (MGP_CAROLIEiJ_G0024207)	B2m (MGP_CAROLIEiJ_G0024206)	Patl2 (MGP_CAROLIEiJ_G0024205)	MGP_CAROLIEiJ_G0024203	MGP_CAROLIEiJ_G0024202	MGP_CAROLIEiJ_G0024201	Ctdspl2 (MGP_CAROLIEiJ_G0024200)	Golm2 (MGP_CAROLIEiJ_G0024199)