Murinae	ANCESTRAL SPECIES	16	ENSGT00950000183050.b.a #7	ENSGT00940000158237 #8	ENSGT00390000011854 #9	ENSGT00530000064222.b #10	ENSGT00940000158652 #11	ENSGT00940000157224 #12	ENSGT00730000111340.g #13	ENSGT00940000161456 #14	ENSGT00390000002030 #15	ENSGT00390000013481.c.a #16	ENSGT00940000157933 #17	ENSGT00390000004542 #18	ENSGT00390000008920.c.a #19	ENSGT00950000182834.A.a.a #20	ENSGT00390000004717 #21	ENSGT00940000159502 #22	ENSGT00940000156065 #23	ENSGT00390000013444.a.a #24	ENSGT00390000008666 #25	ENSGT00940000154859 #26	ENSGT01020000230346.A #27	ENSGT00390000007753.b #28	ENSGT00940000153986.a #29	ENSGT00390000006080 #30	ENSGT01050000244902.b.c.a #31	ENSGT01050000244902.b.c.b #32
Mus	ANCESTRAL SPECIES	8	ENSGT00950000183050.b.a #7	ENSGT00940000158237 #8	ENSGT00390000011854 #9	ENSGT00530000064222.b #10	ENSGT00940000158652 #11	ENSGT00940000157224 #12	ENSGT00730000111340.g #13	ENSGT00940000161456 #14	ENSGT00390000002030 #15	ENSGT00390000013481.c.a #16	ENSGT00940000157933 #17	ENSGT00390000004542 #18	ENSGT00390000008920.c.a #19	ENSGT00950000182834.A.a.a #20	ENSGT00390000004717 #21	ENSGT00940000159502 #22	ENSGT00860000135823	ENSGT00940000156065 #23	ENSGT00390000013444.a.a #24	ENSGT00390000008666 #25	ENSGT00940000154859 #26	ENSGT01020000230346.A #27	ENSGT00390000007753.b #28	ENSGT00940000153986.a #29	ENSGT00390000006080 #30	ENSGT01050000244902.b.c.a #31	ENSGT01050000244902.b.c.b #32	ENSGT00940000155748.b	ENSGT00940000154368.k	ENSGT00940000156653	ENSGT00950000183185.c.a.b
Mus_A	ANCESTRAL SPECIES	12	ENSGT00950000183050.b.a #7	ENSGT00940000158237 #8	ENSGT00390000011854 #9	ENSGT00530000064222.b #10	ENSGT00940000158652 #11	ENSGT00940000157224 #12	ENSGT00730000111340.g #13	ENSGT00940000161456 #14	ENSGT00390000002030 #15	ENSGT00390000013481.c.a #16	ENSGT00940000157933 #17	ENSGT00390000004542 #18	ENSGT00390000008920.c.a #19	ENSGT00950000182834.A.a.a #20	ENSGT00390000004717 #21	ENSGT00940000159502 #22	ENSGT00860000135823	ENSGT00940000156065 #23	ENSGT00390000013444.a.a #24	ENSGT00390000008666 #25	ENSGT00940000154859 #26	ENSGT01020000230346.A #27	ENSGT00390000007753.b #28	ENSGT00940000153986.a #29	ENSGT00390000006080 #30	ENSGT01050000244902.b.c.a #31	ENSGT01050000244902.b.c.b #32	ENSGT00940000155748.b	ENSGT00940000154368.k	ENSGT00940000156653	ENSGT00950000183185.c.a.b
Mus_B	ANCESTRAL SPECIES	11	ENSGT00950000183050.b.a #7	ENSGT00940000158237 #8	ENSGT00390000011854 #9	ENSGT00530000064222.b.e #10	ENSGT00940000158652 #11	ENSGT00940000157224 #12	ENSGT00730000111340.g #13	ENSGT00940000161456 #14	ENSGT00390000002030 #15	ENSGT00390000013481.c.a #16	ENSGT00940000157933 #17	ENSGT00390000004542 #18	ENSGT00390000008920.c.a #19	ENSGT00950000182834.A.a.a #20	ENSGT00390000004717 #21	ENSGT00940000159502 #22	ENSGT00860000135823	ENSGT00940000156065 #23	ENSGT00390000013444.a.a #24	ENSGT00390000008666 #25	ENSGT00940000154859 #26	ENSGT01020000230346.A #27	ENSGT00390000007753.b #28	ENSGT00940000153986.a #29	ENSGT00390000006080 #30	ENSGT01050000244902.b.c.a #31	ENSGT01050000244902.b.c.b #32	ENSGT00940000155748.b	ENSGT00940000154368.k	ENSGT00940000156653	ENSGT00950000183185.c.a.b
Mouse	MODERN SPECIES	5	Peli2 (ENSMUSG00000021846) #7	Ktn1 (ENSMUSG00000021843) #8	Atg14 (ENSMUSG00000037526) #9	Fbxo34 (ENSMUSG00000037536) #10	Dlgap5 (ENSMUSG00000037544) #11	Lgals3 (ENSMUSG00000050335) #12	Mapk1ip1l (ENSMUSG00000021840) #13	Socs4 (ENSMUSG00000048379) #14	Wdhd1 (ENSMUSG00000037572) #15	Gch1 (ENSMUSG00000037580) #16	Samd4 (ENSMUSG00000021838) #17	Cgrrf1 (ENSMUSG00000055128) #18	Gmfb (ENSMUSG00000062014) #19	Cnih1 (ENSMUSG00000015759) #20	Cdkn3 (ENSMUSG00000037628) #21	Bmp4 (ENSMUSG00000021835) #22	Ddhd1 (ENSMUSG00000037697) #23	Fermt2 (ENSMUSG00000037712) #24	Gnpnat1 (ENSMUSG00000037722) #25	Styx (ENSMUSG00000053205) #26	Psmc6 (ENSMUSG00000021832) #27	Ero1a (ENSMUSG00000021831) #28	Gpr137c (ENSMUSG00000049092) #29	Txndc16 (ENSMUSG00000021830) #30	Ptger2 (ENSMUSG00000037759) #31	Ptgdr (ENSMUSG00000071489) #32	Gm8267 (ENSMUSG00000091923) #33	Gm8257 (ENSMUSG00000079265) #34	Gm8247 (ENSMUSG00000091122) #35	Gm5624 (ENSMUSG00000092165) #36	BC061237 (ENSMUSG00000072145) #37
Mus_C	ANCESTRAL SPECIES	26	ENSGT00950000183050.b.a #7	ENSGT00940000158237 #8	ENSGT00390000011854 #9	ENSGT00530000064222.b.e #10	ENSGT00940000158652 #11	ENSGT00940000157224 #12	ENSGT00730000111340.g #13	ENSGT00940000161456 #14	ENSGT00390000002030 #15	ENSGT00390000013481.c.a #16	ENSGT00940000157933 #17	ENSGT00390000004542 #18	ENSGT00390000008920.c.a #19	ENSGT00950000182834.A.a.a #20	ENSGT00390000004717 #21	ENSGT00940000159502 #22	ENSGT00860000135823	ENSGT00940000156065 #23	ENSGT00390000013444.a.a #24	ENSGT00390000008666 #25	ENSGT00940000154859 #26	ENSGT01020000230346.A #27	ENSGT00390000007753.b #28	ENSGT00940000153986.a #29	ENSGT00390000006080 #30	ENSGT01050000244902.b.c.a #31	ENSGT00940000155748.b	ENSGT00940000154368.k	ENSGT00940000156653	ENSGT00950000183185.c.a.b	ENSGT00940000161631
spretus	MODERN SPECIES	5	Peli2 (MGP_SPRETEiJ_G0020059) #7	Ktn1 (MGP_SPRETEiJ_G0020058) #8	Atg14 (MGP_SPRETEiJ_G0020057) #9	Fbxo34 (MGP_SPRETEiJ_G0020056) #10	Dlgap5 (MGP_SPRETEiJ_G0020055) #11	Lgals3 (MGP_SPRETEiJ_G0020054) #12	Mapk1ip1l (MGP_SPRETEiJ_G0020053) #13	Socs4 (MGP_SPRETEiJ_G0020052) #14	Wdhd1 (MGP_SPRETEiJ_G0020051) #15	Gch1 (MGP_SPRETEiJ_G0020050) #16	Samd4 (MGP_SPRETEiJ_G0020049) #17	Cgrrf1 (MGP_SPRETEiJ_G0020048) #18	Gmfb (MGP_SPRETEiJ_G0020047) #19	Cnih1 (MGP_SPRETEiJ_G0020046) #20	Cdkn3 (MGP_SPRETEiJ_G0020045) #21	Bmp4 (MGP_SPRETEiJ_G0020044) #22	MGP_SPRETEiJ_G0020043	Ddhd1 (MGP_SPRETEiJ_G0020042) #23	MGP_SPRETEiJ_G0020041 #24	Gnpnat1 (MGP_SPRETEiJ_G0020040) #25	MGP_SPRETEiJ_G0020039 #26	MGP_SPRETEiJ_G0020038 #26	MGP_SPRETEiJ_G0020037 #24	Psmc6 (MGP_SPRETEiJ_G0020036) #27	Ero1a (MGP_SPRETEiJ_G0020035) #28	Gpr137c (MGP_SPRETEiJ_G0020034) #29	Txndc16 (MGP_SPRETEiJ_G0020033) #30	Ptger2 (MGP_SPRETEiJ_G0020032) #31	Sftpd (MGP_SPRETEiJ_G0020031)	Mbl1 (MGP_SPRETEiJ_G0020030)	Sftpa1 (MGP_SPRETEiJ_G0020029)
Steppe mouse	MODERN SPECIES	3037												Cgrrf1 (ENSMSIG00000019053) #18	Gmfb (ENSMSIG00000019027) #19	ENSMSIG00000019001 #20	Cdkn3 (ENSMSIG00000018974) #21	Bmp4 (ENSMSIG00000018947) #22	ENSMSIG00000018904	ENSMSIG00000018893	Ddhd1 (ENSMSIG00000018517) #23	ENSMSIG00000018504	ENSMSIG00000018488	Fermt2 (ENSMSIG00000018347) #24	Gnpnat1 (ENSMSIG00000018264) #25	ENSMSIG00000018244 #26	Psmc6 (ENSMSIG00000018198) #27	Ero1a (ENSMSIG00000018131) #28	Gpr137c (ENSMSIG00000018106) #29	ENSMSIG00000018061 #30
Ryukyu mouse	MODERN SPECIES	5	Peli2 (MGP_CAROLIEiJ_G0019171) #7	Ktn1 (MGP_CAROLIEiJ_G0019170) #8	Atg14 (MGP_CAROLIEiJ_G0019169) #9	Fbxo34 (MGP_CAROLIEiJ_G0019168) #10	Dlgap5 (MGP_CAROLIEiJ_G0019167) #11	Lgals3 (MGP_CAROLIEiJ_G0019166) #12	Mapk1ip1l (MGP_CAROLIEiJ_G0019165) #13	Socs4 (MGP_CAROLIEiJ_G0019164) #14	Wdhd1 (MGP_CAROLIEiJ_G0019163) #15	Gch1 (MGP_CAROLIEiJ_G0019162) #16	Samd4 (MGP_CAROLIEiJ_G0019161) #17	Cgrrf1 (MGP_CAROLIEiJ_G0019160) #18	Gmfb (MGP_CAROLIEiJ_G0019159) #19	Cnih1 (MGP_CAROLIEiJ_G0019158) #20	Cdkn3 (MGP_CAROLIEiJ_G0019157) #21	Bmp4 (MGP_CAROLIEiJ_G0019156) #22	MGP_CAROLIEiJ_G0019155	Ddhd1 (MGP_CAROLIEiJ_G0019154) #23	Fermt2 (MGP_CAROLIEiJ_G0019153) #24	Gnpnat1 (MGP_CAROLIEiJ_G0019152) #25	MGP_CAROLIEiJ_G0019151 #26	Psmc6 (MGP_CAROLIEiJ_G0019150) #27	Ero1a (MGP_CAROLIEiJ_G0019149) #28	Gpr137c (MGP_CAROLIEiJ_G0019148) #29	Txndc16 (MGP_CAROLIEiJ_G0019147) #30	Ptger2 (MGP_CAROLIEiJ_G0019146) #31	Sftpd (MGP_CAROLIEiJ_G0019145)	Mbl1 (MGP_CAROLIEiJ_G0019144)	Sftpa1 (MGP_CAROLIEiJ_G0019143)	Mat1a (MGP_CAROLIEiJ_G0019142)	Dydc1 (MGP_CAROLIEiJ_G0019141)
Shrew mouse	MODERN SPECIES	21	Peli2 (MGP_PahariEiJ_G0030188) #7	Ktn1 (MGP_PahariEiJ_G0030187) #8	Atg14 (MGP_PahariEiJ_G0030186) #9	Fbxo34 (MGP_PahariEiJ_G0030185) #10	Dlgap5 (MGP_PahariEiJ_G0030184) #11	Lgals3 (MGP_PahariEiJ_G0030183) #12	Mapk1ip1l (MGP_PahariEiJ_G0030182) #13	Socs4 (MGP_PahariEiJ_G0030181) #14	Wdhd1 (MGP_PahariEiJ_G0030180) #15	Gch1 (MGP_PahariEiJ_G0030179) #16	Samd4 (MGP_PahariEiJ_G0030178) #17	Cgrrf1 (MGP_PahariEiJ_G0030177) #18	Gmfb (MGP_PahariEiJ_G0030176) #19	Cnih1 (MGP_PahariEiJ_G0030175) #20	Cdkn3 (MGP_PahariEiJ_G0030174) #21	Bmp4 (MGP_PahariEiJ_G0030173) #22	MGP_PahariEiJ_G0030172	Ddhd1 (MGP_PahariEiJ_G0030171) #23	Fermt2 (MGP_PahariEiJ_G0030170) #24	Gnpnat1 (MGP_PahariEiJ_G0030169) #25	MGP_PahariEiJ_G0030168 #26	Psmc6 (MGP_PahariEiJ_G0030167) #27	Ero1a (MGP_PahariEiJ_G0030166) #28	Gpr137c (MGP_PahariEiJ_G0030165) #29	Txndc16 (MGP_PahariEiJ_G0030164) #30	Ptger2 (MGP_PahariEiJ_G0030163) #31	Ptgdr (MGP_PahariEiJ_G0030162) #32	Sftpd (MGP_PahariEiJ_G0030161)	Mbl1 (MGP_PahariEiJ_G0030160)	Sftpa1 (MGP_PahariEiJ_G0030159)	Mat1a (MGP_PahariEiJ_G0030158)
Rat	MODERN SPECIES	6	Atg14 (ENSRNOG00000011873) #9	Fbxo34 (ENSRNOG00000011704) #10	Dlgap5 (ENSRNOG00000010721) #11	Lgals3 (ENSRNOG00000010645) #12	Mapk1ip1l (ENSRNOG00000011611) #13	Socs4 (ENSRNOG00000068183) #14	Wdhd1 (ENSRNOG00000011167) #15	Gch1 (ENSRNOG00000011039) #16	ENSRNOG00000070489	Samd4a (ENSRNOG00000010489) #17	Rpl39-ps12 (ENSRNOG00000029267)	Cgrrf1 (ENSRNOG00000010178) #18	Gmfb (ENSRNOG00000064480) #19	Cnih1 (ENSRNOG00000009811) #20	Cdkn3 (ENSRNOG00000009785) #21	Bmp4 (ENSRNOG00000009694) #22	Ddhd1 (ENSRNOG00000009481) #23	LOC108353033 (ENSRNOG00000068233)	Fermt2 (ENSRNOG00000009102) #24	Gnpnat1 (ENSRNOG00000008641) #25	Styx (ENSRNOG00000007956) #26	Psmc6 (ENSRNOG00000007203) #27	Ero1a (ENSRNOG00000006462) #28	ENSRNOG00000031251	Gpr137c (ENSRNOG00000026328) #29	Txndc16 (ENSRNOG00000006334) #30	AABR07017250.1 (ENSRNOG00000049099)	Ptger2 (ENSRNOG00000050968) #31	ENSRNOG00000065866	AABR07017241.1 (ENSRNOG00000031307) #32	LOC120096940 (ENSRNOG00000065026) #35