Rodentia_A ANCESTRAL SPECIES 9 ENSGT00940000159699 ENSGT00940000162825.h ENSGT00950000183442 ENSGT00390000015623 ENSGT00940000155009 ENSGT00940000160244 ENSGT00390000003231.b ENSGT00530000063186.a ENSGT00950000182841.b.a.a.a #21 ENSGT00940000163515 ENSGT00940000158538 ENSGT00530000063484.b.b ENSGT00940000164247 ENSGT00940000154342.C #20 ENSGT00940000165498 ENSGT00940000159499 #22 ENSGT01000000214434.B.b.e.a #23 ENSGT00390000011425.B #24 ENSGT00390000015719.d #25 ENSGT00940000155485 ENSGT00940000164194 ENSGT01090000260076.b.b #26 ENSGT00940000167876 ENSGT00940000163797.b ##27 ENSGT00940000163797.a.b #27 ENSGT00940000160633 ENSGT00550000074891 ENSGT00940000156040 ENSGT01030000234646.B.a.b ENSGT00390000013549.a.b.b ENSGT00940000158684 Hystricomorpha ANCESTRAL SPECIES 11 ENSGT00940000158618 ENSGT00940000155009 ENSGT00940000160244 ENSGT00390000003231.b ENSGT00530000063186.a ENSGT00950000182841.b.a.a.a.n.a ##21 ENSGT00940000158538 ENSGT00940000163515 ENSGT00940000162492 ENSGT00940000163202 ENSGT00940000163254 ENSGT00940000159699 ENSGT00530000063484.b.b ENSGT00940000154342.C #20 ENSGT00950000182841.b.a.a.a.n.b #21 ENSGT00940000159499 #22 ENSGT01000000214434.B.b.e.a #23 ENSGT00390000011425.B #24 ENSGT00390000015719.d #25 ENSGT01090000260076.b.b #26 ENSGT00940000163797.a.b #27 ENSGT00390000018199.b.b.b #28 ENSGT00940000160633 ENSGT00550000074891 ENSGT00940000156040 ENSGT01030000234646.B.a.b ENSGT00390000013549.a.b.b ENSGT00940000158684 ENSGT00550000074801.g.b.f ENSGT00940000159116 ENSGT00510000048637 Hystricomorpha_a ANCESTRAL SPECIES 60 ENSGT00940000154342.C #20 ENSGT00950000182841.b.a.a.a.n.b #21 ENSGT00940000159499 #22 ENSGT01000000214434.B.b.e.a #23 ENSGT00390000011425.B #24 ENSGT00390000015719.d #25 ENSGT01090000260076.b.b #26 ENSGT00940000163797.a.b #27 ENSGT00390000018199.b.b.b #28 ENSGT00940000160633 ENSGT00550000074891 ENSGT00940000156040 ENSGT01030000234646.B.a.b ENSGT00390000013549.a.b.b ENSGT00940000158684 ENSGT00550000074801.g.b.f ENSGT00940000159116 ENSGT00510000048637 Guinea pig MODERN SPECIES 78 ENSCPOG00000036395 #19 DMD (ENSCPOG00000009096) #20 ENSCPOG00000025879 #21 TAB3 (ENSCPOG00000004407) #22 ENSCPOG00000003261 #23 TASL (ENSCPOG00000021794) #24 NR0B1 (ENSCPOG00000009555) #25 IL1RAPL1 (ENSCPOG00000013251) #26 MAGEB10 (ENSCPOG00000024711) #27 PPP4R3C (ENSCPOG00000022757) #28 Hystricomorpha_b ANCESTRAL SPECIES 73 ENSGT00940000154342.C #20 ENSGT00940000159499 #22 ENSGT01000000214434.B.b.e.a #23 ENSGT00390000011425.B #24 ENSGT00390000015719.d #25 ENSGT01090000260076.b.b #26 ENSGT00940000160633 ENSGT00550000074891 ENSGT00940000156040 ENSGT01030000234646.B.a.b ENSGT00390000013549.a.b.b ENSGT00940000158684 ENSGT00550000074801.g.b.f ENSGT00940000159116 ENSGT00510000048637 ENSGT00530000063666.b ENSGT00950000183121.b.b.b.b Long-tailed chinchilla MODERN SPECIES 242 DMD (ENSCLAG00000000730) #20 TAB3 (ENSCLAG00000000311) #22 Degu MODERN SPECIES 82 ENSODEG00000013819 #20 ENSODEG00000011964 #20 ENSODEG00000012363 TAB3 (ENSODEG00000012833) #22 ENSODEG00000012715 #23 ENSODEG00000012154 ENSODEG00000012878 ENSODEG00000019990 NR0B1 (ENSODEG00000012483) #25 ENSODEG00000020033 IL1RAPL1 (ENSODEG00000013139) #26 ENSODEG00000020083 PPP4R3C (ENSODEG00000013461) #28 ENSODEG00000020096 ARX (ENSODEG00000013376) POLA1 (ENSODEG00000013021) ENSODEG00000013614 PCYT1B (ENSODEG00000012646) PDK3 (ENSODEG00000013024) Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 31 ENSHGLG00000049832 ENSHGLG00000009508 ENSHGLG00000008822 ENSHGLG00000040418 ENSHGLG00000037484 ENSHGLG00000039404 ENSHGLG00000037849 ENSHGLG00000037372 ENSHGLG00000048753 ENSHGLG00000004326 ENSHGLG00000005849 ENSHGLG00000005835 ENSHGLG00000049444 DMD (ENSHGLG00000005498) #20 ENSHGLG00000020285 #21 ENSHGLG00000007287 #22 ENSHGLG00000007611 #23 TASL (ENSHGLG00000007921) #24 ENSHGLG00000037800 NR0B1 (ENSHGLG00000008237) #25 ENSHGLG00000034773 ENSHGLG00000021277 ENSHGLG00000037698 IL1RAPL1 (ENSHGLG00000005303) #26 ENSHGLG00000045692 ENSHGLG00000034575 ENSHGLG00000044951 ENSHGLG00000046672 #27 ENSHGLG00000020590 #28 ENSHGLG00000047315 ENSHGLG00000037561 Naked mole-rat female MODERN SPECIES 7 ENSHGLG00000050788 TMEM174 (ENSHGLG00000000703) ENSHGLG00000049788 ENSHGLG00000046108 ENSHGLG00000037500 C1QTNF3 (ENSHGLG00000035386) ENSHGLG00000020147 ENSHGLG00000036649 RAI14 (ENSHGLG00000006343) TTC23L (ENSHGLG00000048370) RAD1 (ENSHGLG00000005320) ENSHGLG00000004566 ENSHGLG00000003933 AGXT2 (ENSHGLG00000003288) PRLR (ENSHGLG00000009051) ENSHGLG00000007072 #22 SPEF2 (ENSHGLG00000029358) IL7R (ENSHGLG00000047499) ENSHGLG00000004787 CAPSL (ENSHGLG00000004701) LMBRD2 (ENSHGLG00000003754) SKP2 (ENSHGLG00000003646) NADK2 (ENSHGLG00000002659) RANBP3L (ENSHGLG00000012032) ENSHGLG00000047940 ENSHGLG00000039421 ENSHGLG00000048659 SLC1A3 (ENSHGLG00000011585) NIPBL (ENSHGLG00000010862) CPLANE1 (ENSHGLG00000008523) ENSHGLG00000007110 Sciuridae ANCESTRAL SPECIES 28 ENSGT00390000003231.b ENSGT00530000063186.a ENSGT00950000182841.b.a.a.a.k.b #21 ENSGT00940000158538 ENSGT00940000163515 ENSGT00950000182841.b.a.a.a.k.a #21 ENSGT00940000162492 ENSGT00940000163202 ENSGT00940000159699 ENSGT00940000162825.h ENSGT00950000183442 ENSGT00530000063484.b.b ENSGT00940000164247 ENSGT00940000154342.C #20 ENSGT00950000182841.b.a.a.a.l #21 ENSGT00940000159499 #22 ENSGT01000000214434.B.b.e.a #23 ENSGT00390000011425.B #24 ENSGT00390000015719.d #25 ENSGT00940000155485 ENSGT00940000164194 ENSGT01090000260076.b.b #26 ENSGT00940000167876 ENSGT00940000163797.b ##27 ENSGT00940000163797.a.b #27 ENSGT00950000182900.D.d.b ENSGT00390000018199.b.b.b #28 ENSGT00940000160633 ENSGT00550000074891 ENSGT00940000156040 ENSGT01030000234646.B.a.b Marmotini ANCESTRAL SPECIES 64 ENSGT00940000160244 ENSGT00390000003231.b ENSGT00530000063186.a ENSGT00950000182841.b.a.a.a.k.b #21 ENSGT00940000163515 ENSGT00940000158538 ENSGT00940000162492 ENSGT00940000163202 ENSGT00940000159699 ENSGT00940000162825.h ENSGT00950000183442 ENSGT00530000063484.b.b ENSGT00950000182841.b.a.a.a.k.a #21 ENSGT00940000154342.C #20 ENSGT00950000182841.b.a.a.a.l #21 ENSGT00940000159499 #22 ENSGT01000000214434.B.b.e.a #23 ENSGT00390000011425.B #24 ENSGT00390000015719.d #25 ENSGT00940000155485 ENSGT00940000164194 ENSGT01090000260076.b.b #26 ENSGT00940000159951 ENSGT00940000163449 Marmotini_b ANCESTRAL SPECIES 256 ENSGT00940000154342.C #20 ENSGT00950000182841.b.a.a.a.l #21 ENSGT00940000159499 #22 ENSGT01000000214434.B.b.e.a #23 ENSGT00390000011425.B #24 ENSGT00390000015719.d #25 ENSGT00940000159951 ENSGT00940000163449 Squirrel MODERN SPECIES 153 ENSSTOG00000028562 #20 ENSSTOG00000020610 #21 TAB3 (ENSSTOG00000027885) #22 ENSSTOG00000008732 #23 TASL (ENSSTOG00000027484) #24 NR0B1 (ENSSTOG00000025906) #25 ENSSTOG00000021156 IL1RAPL1 (ENSSTOG00000016269) #26 ENSSTOG00000026056 ENSSTOG00000026622 ENSSTOG00000031082 ENSSTOG00000033066 ENSSTOG00000026907 MAGEB18 (ENSSTOG00000010136) ENSSTOG00000019374 ENSSTOG00000032665 PCDH9 (ENSSTOG00000025475) Arctic ground squirrel MODERN SPECIES 273 DMD (ENSUPAG00010012683) #20 ENSUPAG00010012670 #21 TAB3 (ENSUPAG00010012656) #22 ENSUPAG00010012072 #23 TASL (ENSUPAG00010012060) #24 ENSUPAG00010012056 #25 Alpin marmot MODERN SPECIES 21 ENSMMMG00000009990 XK (ENSMMMG00000009986) ENSMMMG00000009942 #21 ENSMMMG00000009939 PRRG1 (ENSMMMG00000009880) ENSMMMG00000009849 ENSMMMG00000009784 ENSMMMG00000009711 ENSMMMG00000009690 ENSMMMG00000009675 ENSMMMG00000009661 ENSMMMG00000009599 DMD (ENSMMMG00000009471) #20 ENSMMMG00000009321 #21 ENSMMMG00000009314 TAB3 (ENSMMMG00000009282) #22 ENSMMMG00000008926 #23 TASL (ENSMMMG00000008909) #24 ENSMMMG00000008902 ##21 ENSMMMG00000008898 #25 MAGEB2 (ENSMMMG00000008852) IL1RAPL1 (ENSMMMG00000008816) #26 MAGEB10 (ENSMMMG00000008757) ##27 ENSMMMG00000008747 #27 ENSMMMG00000008731 ENSMMMG00000008728 PPP4R3C (ENSMMMG00000008719) #28 ENSMMMG00000008683 MAGEB5 (ENSMMMG00000008678) MAGEB18 (ENSMMMG00000008662) POLA1 (ENSMMMG00000008608) Eurasian red squirrel MODERN SPECIES 156 ENSSVLG00005020399 ENSSVLG00005020434 ENSSVLG00005021150 ENSSVLG00005012356 ENSSVLG00005012370 ENSSVLG00005012418 ENSSVLG00005012434 ENSSVLG00005012506 TMEM47 (ENSSVLG00005012536) ENSSVLG00005012581 #21 ENSSVLG00005012599 ENSSVLG00005012649 ENSSVLG00005012747 DMD (ENSSVLG00005014353) #20 FTHL17 (ENSSVLG00005019179) TAB3 (ENSSVLG00005019220) #22 ENSSVLG00005019819 #23 TASL (ENSSVLG00005020555) #24 ENSSVLG00005020566 NR0B1 (ENSSVLG00005020593) #25 ENSSVLG00005020633 MAGEB3 (ENSSVLG00005020653) ENSSVLG00005020696 IL1RAPL1 (ENSSVLG00005020714) #26 ENSSVLG00005020824 MAGEB10 (ENSSVLG00005020880) ##27 ENSSVLG00005021042 ENSSVLG00005021072 ENSSVLG00005021099 PPP4R3C (ENSSVLG00005021154) #28 ENSSVLG00005021173