Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00860000135966 #8	ENSGT00520000058096 #9	ENSGT00940000155004 #10	ENSGT00940000159027 #11	ENSGT00390000015579.b #12	ENSGT00940000160755 #13	ENSGT00940000157864 #14	ENSGT00950000182803.A.a.b #15	ENSGT00940000161294 #16	ENSGT00390000008825.b.b #17	ENSGT00390000009925.b #18	ENSGT00940000156895 #19	ENSGT00390000003595 #20	ENSGT00920000149199	ENSGT01090000260051.a #21	ENSGT00390000011856 #22	ENSGT00940000153578.A #23	ENSGT00940000153335.a.a #24	ENSGT00390000017589 #25	ENSGT00940000157287 #26	ENSGT00720000108861 #28	ENSGT00900000141125 #29	ENSGT00940000161851 #30	ENSGT00940000154334.l #31	ENSGT00530000063718.a.a #32	ENSGT00730000110939.b #33	ENSGT00940000159360 #34	ENSGT01100000263504.a.a.yb #35	ENSGT00950000183187.B #36	ENSGT01100000263555.b #37	ENSGT00390000007870
Hystricomorpha	ANCESTRAL SPECIES	24	ENSGT00940000160433 #7	ENSGT00860000135966 #8	ENSGT00520000058096 #9	ENSGT00940000155004 #10	ENSGT00940000159027 #11	ENSGT00390000015579.b #12	ENSGT00940000160755 #13	ENSGT00940000157864 #14	ENSGT00950000182803.A.a.b #15	ENSGT00940000161294 #16	ENSGT00390000008825.b.b #17	ENSGT00390000009925.b #18	ENSGT00940000156895 #19	ENSGT00390000003595 #20	ENSGT01090000260051.a #21	ENSGT00390000011856 #22	ENSGT00940000153578.A #23	ENSGT00940000153335.a.a #24	ENSGT00390000017589 #25	ENSGT00940000157287 #26	ENSGT00720000108861 #28	ENSGT00900000141125 #29	ENSGT00940000161851 #30	ENSGT00940000154334.l #31	ENSGT00530000063718.a.a #32	ENSGT00730000110939.b #33	ENSGT00940000159360 #34	ENSGT01100000263504.a.a.yb #35	ENSGT00950000183187.B #36	ENSGT01100000263555.b #37	ENSGT00390000007870
Naked mole-rat female	MODERN SPECIES	12	ST6GALNAC2 (ENSHGLG00000016472) #7	ENSHGLG00000041504 #8	PRCD (ENSHGLG00000043747) #9	Cygb (ENSHGLG00000032440) #10	RHBDF2 (ENSHGLG00000007384) #11	AANAT (ENSHGLG00000006672) #12	UBE2O (ENSHGLG00000006311) #13	ENSHGLG00000048367 #14	ENSHGLG00000005280 #15	QRICH2 (ENSHGLG00000018287) #16	UBALD2 (ENSHGLG00000018275) #17	RNF157 (ENSHGLG00000017437) #18	FOXJ1 (ENSHGLG00000019133) #19	EXOC7 (ENSHGLG00000012895) #20	GALR2 (ENSHGLG00000012244) #21	SRP68 (ENSHGLG00000010531) #22	EVPL (ENSHGLG00000009178) #23	ENSHGLG00000039392 #24	TEN1 (ENSHGLG00000032200) #25	ACOX1 (ENSHGLG00000005696) #26	ENSHGLG00000012999 #27	FBF1 (ENSHGLG00000009386) #28	MRPL38 (ENSHGLG00000008639) #29	TRIM65 (ENSHGLG00000035048) #30	TRIM47 (ENSHGLG00000015373) #31	WBP2 (ENSHGLG00000018617) #32	UNC13D (ENSHGLG00000008486) #33	UNK (ENSHGLG00000007512) #34	ENSHGLG00000043049 #35	GALK1 (ENSHGLG00000006114) #36	ITGB4 (ENSHGLG00000004560) #37
Hystricomorpha_a	ANCESTRAL SPECIES	19	ENSGT00940000159930	ENSGT00940000160433 #7	ENSGT00520000058096 #9	ENSGT00940000155004 #10	ENSGT00940000159027 #11	ENSGT00390000015579.b #12	ENSGT00940000160755 #13	ENSGT00940000157864 #14	ENSGT00950000182803.A.a.b #15	ENSGT00940000161294 #16	ENSGT00390000008825.b.b #17	ENSGT00390000009925.b #18	ENSGT00940000156895 #19	ENSGT00390000003595 #20	ENSGT01090000260051.a #21	ENSGT00390000011856 #22	ENSGT00940000153578.A #23	ENSGT00940000153335.a.a #24	ENSGT00390000017589 #25	ENSGT00940000157287 #26	ENSGT00720000108861 #28	ENSGT00900000141125 #29	ENSGT00940000161851 #30	ENSGT00940000154334.l #31	ENSGT00530000063718.a.a #32	ENSGT00730000110939.b #33	ENSGT00940000159360 #34	ENSGT01100000263504.a.a.yb #35	ENSGT00950000183187.B #36	ENSGT01100000263555.b #37	ENSGT00390000007870
Hystricomorpha_b	ANCESTRAL SPECIES	12	ENSGT00940000159930	ENSGT00940000160433 #7	ENSGT00520000058096 #9	ENSGT00940000155004 #10	ENSGT00940000159027 #11	ENSGT00390000015579.b #12	ENSGT00940000160755 #13	ENSGT00940000157864 #14	ENSGT00950000182803.A.a.b #15	ENSGT00940000161294 #16	ENSGT00390000008825.b.b #17	ENSGT00390000009925.b #18	ENSGT00940000156895 #19	ENSGT00390000003595 #20	ENSGT01090000260051.a #21	ENSGT00390000011856 #22	ENSGT00940000153578.A #23	ENSGT00940000153335.a.a #24	ENSGT00390000017589 #25	ENSGT00940000157287 #26	ENSGT00720000108861 #28	ENSGT00900000141125 #29	ENSGT00940000161851 #30	ENSGT00940000154334.l #31	ENSGT00530000063718.a.a #32	ENSGT00730000110939.b #33	ENSGT00940000159360 #34	ENSGT01100000263504.a.a.yb #35	ENSGT00950000183187.B #36	ENSGT01100000263555.b #37	ENSGT00390000007870
Degu	DUPLICATION
Degu	MODERN SPECIES	12																ENSODEG00000000296 #22
Degu	MODERN SPECIES	74	ENSODEG00000014748	METTL23 (ENSODEG00000011047)	JMJD6 (ENSODEG00000011632)	ENSODEG00000010744	CYGB (ENSODEG00000011488) #10	RHBDF2 (ENSODEG00000010976) #11	Aanat (ENSODEG00000010785) #12	UBE2O (ENSODEG00000010303) #13	PRPSAP1 (ENSODEG00000010893) #15	UBALD2 (ENSODEG00000010660) #17	ENSODEG00000011892	RNF157 (ENSODEG00000010225) #18	FOXJ1 (ENSODEG00000013249) #19	ENSODEG00000010943 #20	GALR2 (ENSODEG00000010552) #21	ENSODEG00000011522 #22	EVPL (ENSODEG00000011359) #23	CDK3 (ENSODEG00000012120) #24	ACOX1 (ENSODEG00000010668) #26	MRPL38 (ENSODEG00000014002) #29	TRIM47 (ENSODEG00000011870) #31	WBP2 (ENSODEG00000012205) #32	UNC13D (ENSODEG00000011143) #33	UNK (ENSODEG00000010183) #34	GALK1 (ENSODEG00000010024) #36	ITGB4 (ENSODEG00000010119) #37	ENSODEG00000011032	ENSODEG00000009654	SAP30BP (ENSODEG00000012944)	ENSODEG00000011703	ENSODEG00000009885
Long-tailed chinchilla	MODERN SPECIES	213	ST6GALNAC2 (ENSCLAG00000010327) #7	PRCD (ENSCLAG00000009358) #9	CYGB (ENSCLAG00000010138) #10	RHBDF2 (ENSCLAG00000010237) #11	AANAT (ENSCLAG00000015545) #12	UBE2O (ENSCLAG00000011856) #13	SPHK1 (ENSCLAG00000013229) #14	PRPSAP1 (ENSCLAG00000007525) #15	ENSCLAG00000008887	ENSCLAG00000013789 #16	UBALD2 (ENSCLAG00000007176) #17	RNF157 (ENSCLAG00000007864) #18	FOXJ1 (ENSCLAG00000009305) #19	EXOC7 (ENSCLAG00000012049) #20	GALR2 (ENSCLAG00000015674) #21	SRP68 (ENSCLAG00000013646) #22	EVPL (ENSCLAG00000006624) #23	CDK3 (ENSCLAG00000007409) #24	TEN1 (ENSCLAG00000015964) #25	ACOX1 (ENSCLAG00000016733) #26	FBF1 (ENSCLAG00000011326) #28	MRPL38 (ENSCLAG00000007129) #29	TRIM65 (ENSCLAG00000007508) #30	TRIM47 (ENSCLAG00000008148) #31	WBP2 (ENSCLAG00000008822) #32	UNC13D (ENSCLAG00000010782) #33	UNK (ENSCLAG00000008106) #34	H3f3b (ENSCLAG00000009278) #35	GALK1 (ENSCLAG00000006961) #36	ITGB4 (ENSCLAG00000008871) #37	SAP30BP (ENSCLAG00000007597)
Guinea pig	MODERN SPECIES	190		ENSCPOG00000032161	ST6GALNAC2 (ENSCPOG00000027529) #7	PRCD (ENSCPOG00000031923) #9	CYGB (ENSCPOG00000035923) #10	RHBDF2 (ENSCPOG00000009889) #11	AANAT (ENSCPOG00000038827) #12	UBE2O (ENSCPOG00000012196) #13	SPHK1 (ENSCPOG00000012191) #14	PRPSAP1 (ENSCPOG00000004639) #15	ENSCPOG00000005032 #16	UBALD2 (ENSCPOG00000038214) #17	RNF157 (ENSCPOG00000000794) #18	FOXJ1 (ENSCPOG00000035134) #19	EXOC7 (ENSCPOG00000005424) #20	SRP68 (ENSCPOG00000009121) #22	EVPL (ENSCPOG00000011545) #23	TEN1 (ENSCPOG00000032644) #25	ACOX1 (ENSCPOG00000015141) #26	FBF1 (ENSCPOG00000015133) #28	MRPL38 (ENSCPOG00000025936) #29	TRIM65 (ENSCPOG00000015130) #30	TRIM47 (ENSCPOG00000037371) #31	WBP2 (ENSCPOG00000012691) #32	UNC13D (ENSCPOG00000012684) #33	UNK (ENSCPOG00000012679) #34	ENSCPOG00000039393 ##35	GALK1 (ENSCPOG00000012670) #36	ITGB4 (ENSCPOG00000012656) #37	SAP30BP (ENSCPOG00000012653)	ENSCPOG00000030894
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00940000160433 #7	ENSGT00520000058096 #9	ENSGT00940000155004 #10	ENSGT00940000159027 #11	ENSGT00390000015579.b #12	ENSGT00940000160755 #13	ENSGT00940000157864 #14	ENSGT00950000182803.A.a.b #15	ENSGT00940000161294 #16	ENSGT00390000008825.b.b #17	ENSGT00390000009925.b #18	ENSGT00940000156895 #19	ENSGT00390000003595 #20	ENSGT00920000149199	ENSGT01090000260051.a #21	ENSGT00390000011856 #22	ENSGT00940000153578.A #23	ENSGT00940000153335.a.a #24	ENSGT00390000017589 #25	ENSGT00940000157287 #26	ENSGT00720000108861 #28	ENSGT00900000141125 #29	ENSGT00940000161851 #30	ENSGT00940000154334.l #31	ENSGT00530000063718.a.a #32	ENSGT00730000110939.b #33	ENSGT00940000159360 #34	ENSGT01100000263504.a.a.yb #35	ENSGT00950000183187.B #36	ENSGT01100000263555.b #37	ENSGT00390000007870
Marmotini	ANCESTRAL SPECIES	36	ENSGT00940000160433 #7	ENSGT00520000058096 #9	ENSGT00940000155004 #10	ENSGT00940000159027 #11	ENSGT00390000015579.b #12	ENSGT00940000160755 #13	ENSGT00940000157864 #14	ENSGT00950000182803.A.a.b #15	ENSGT00940000161294 #16	ENSGT00390000008825.b.b #17	ENSGT00390000009925.b #18	ENSGT00940000156895 #19	ENSGT00390000003595 #20	ENSGT00920000149199	ENSGT01090000260051.a #21	ENSGT00390000011856 #22	ENSGT00940000153578.A #23	ENSGT00940000153335.a.a #24	ENSGT00390000017589 #25	ENSGT00940000157287 #26	ENSGT00720000108861 #28	ENSGT00900000141125 #29	ENSGT00940000161851 #30	ENSGT00940000154334.l #31	ENSGT00530000063718.a.a.e #32	ENSGT00730000110939.b #33	ENSGT00940000159360 #34	ENSGT01100000263504.a.a.yb #35	ENSGT00950000183187.B #36	ENSGT01100000263555.b #37	ENSGT00390000007870
Marmotini_b	ANCESTRAL SPECIES	20	ENSGT00940000160433 #7	ENSGT00520000058096 #9	ENSGT00940000155004 #10	ENSGT00940000159027 #11	ENSGT00390000015579.b #12	ENSGT00940000160755 #13	ENSGT00940000157864 #14	ENSGT00950000182803.A.a.b #15	ENSGT00940000161294 #16	ENSGT00390000008825.b.b #17	ENSGT00390000009925.b #18	ENSGT00940000156895 #19	ENSGT00390000003595 #20	ENSGT00920000149199	ENSGT01090000260051.a #21	ENSGT00390000011856 #22	ENSGT00940000153578.A #23	ENSGT00940000153335.a.a #24	ENSGT00390000017589 #25	ENSGT00940000157287 #26	ENSGT00720000108861 #28	ENSGT00900000141125 #29	ENSGT00940000161851 #30	ENSGT00940000154334.l #31	ENSGT00530000063718.a.a.e #32	ENSGT00730000110939.b #33	ENSGT00940000159360 #34	ENSGT01100000263504.a.a.yb #35	ENSGT00950000183187.B #36	ENSGT01100000263555.b #37	ENSGT00390000007870
Arctic ground squirrel	MODERN SPECIES	308	ST6GALNAC1 (ENSUPAG00010000792)	ST6GALNAC2 (ENSUPAG00010000773) #7	PRCD (ENSUPAG00010000735) #9	CYGB (ENSUPAG00010000715) #10	RHBDF2 (ENSUPAG00010000687) #11	AANAT (ENSUPAG00010000680) #12	UBE2O (ENSUPAG00010000644) #13	SPHK1 (ENSUPAG00010000611) #14	PRPSAP1 (ENSUPAG00010000598) #15	ENSUPAG00010000581 #16	UBALD2 (ENSUPAG00010000572) #17	RNF157 (ENSUPAG00010000471) #18	FOXJ1 (ENSUPAG00010000448) #19	EXOC7 (ENSUPAG00010000376) #20	GALR2 (ENSUPAG00010000364) #21	SRP68 (ENSUPAG00010000259) #22	EVPL (ENSUPAG00010000223) #23	CDK3 (ENSUPAG00010000188) #24	TEN1 (ENSUPAG00010000179) #25	ACOX1 (ENSUPAG00010000110) #26	FBF1 (ENSUPAG00010000035) #28	MRPL38 (ENSUPAG00010024012) #29	TRIM65 (ENSUPAG00010024011) #30	TRIM47 (ENSUPAG00010024010) #31	ENSUPAG00010024009 #32	UNC13D (ENSUPAG00010024008) #33	UNK (ENSUPAG00010024007) #34	GALK1 (ENSUPAG00010024006) #36	ITGB4 (ENSUPAG00010024005) #37	SAP30BP (ENSUPAG00010024004)	ENSUPAG00010024003
Squirrel	MODERN SPECIES	194	ST6GALNAC2 (ENSSTOG00000020786) #7	PRCD (ENSSTOG00000030365) #9	CYGB (ENSSTOG00000006499) #10	RHBDF2 (ENSSTOG00000013560) #11	AANAT (ENSSTOG00000013555) #12	UBE2O (ENSSTOG00000028690) #13	SPHK1 (ENSSTOG00000021818) #14	PRPSAP1 (ENSSTOG00000024445) #15	ENSSTOG00000020503 #16	UBALD2 (ENSSTOG00000010745) #17	RNF157 (ENSSTOG00000010734) #18	FOXJ1 (ENSSTOG00000021584) #19	EXOC7 (ENSSTOG00000007475) #20	ZACN (ENSSTOG00000007453)	GALR2 (ENSSTOG00000007442) #21	SRP68 (ENSSTOG00000007424) #22	EVPL (ENSSTOG00000022668) #23	CDK3 (ENSSTOG00000007350) #24	TEN1 (ENSSTOG00000019554) #25	ACOX1 (ENSSTOG00000013437) #26	FBF1 (ENSSTOG00000013411) #28	MRPL38 (ENSSTOG00000013400) #29	TRIM65 (ENSSTOG00000013392) #30	TRIM47 (ENSSTOG00000013386) #31	ENSSTOG00000021421 #32	UNC13D (ENSSTOG00000013367) #33	UNK (ENSSTOG00000013344) #34	ENSSTOG00000024226 #35	GALK1 (ENSSTOG00000013326) #36	ITGB4 (ENSSTOG00000025173) #37	SAP30BP (ENSSTOG00000012995)
Alpin marmot	MODERN SPECIES	90	ENSMMMG00000009086	ST6GALNAC2 (ENSMMMG00000009095) #7	PRCD (ENSMMMG00000009119) #9	CYGB (ENSMMMG00000009125) #10	RHBDF2 (ENSMMMG00000009139) #11	AANAT (ENSMMMG00000009179) #12	ENSMMMG00000009195	SPHK1 (ENSMMMG00000009221) #14	PRPSAP1 (ENSMMMG00000009288) #15	ENSMMMG00000009313 #16	UBALD2 (ENSMMMG00000009331) #17	RNF157 (ENSMMMG00000009336) #18	FOXJ1 (ENSMMMG00000009430) #19	EXOC7 (ENSMMMG00000009453) #20	GALR2 (ENSMMMG00000009625) #21	SRP68 (ENSMMMG00000009641) #22	EVPL (ENSMMMG00000009809) #23	CDK3 (ENSMMMG00000009835) #24	TEN1 (ENSMMMG00000009854) #25	ACOX1 (ENSMMMG00000009864) #26	FBF1 (ENSMMMG00000009930) #28	MRPL38 (ENSMMMG00000010024) #29	TRIM65 (ENSMMMG00000010032) #30	TRIM47 (ENSMMMG00000010055) #31	ENSMMMG00000010067 #32	UNC13D (ENSMMMG00000010112) #33	UNK (ENSMMMG00000010302) #34	ENSMMMG00000010351 ##35	GALK1 (ENSMMMG00000010359) #36	ENSMMMG00000010386	SAP30BP (ENSMMMG00000010396)
Eurasian red squirrel	MODERN SPECIES	12	RHBDF2 (ENSSVLG00005022898) #11	AANAT (ENSSVLG00005022922) #12	ENSSVLG00005022947	UBE2O (ENSSVLG00005022995) #13	SPHK1 (ENSSVLG00005023035) #14	PRPSAP1 (ENSSVLG00005023130) #15	QRICH2 (ENSSVLG00005023200) #16	ENSSVLG00005023381 #17	RNF157 (ENSSVLG00005023425) #18	ENSSVLG00005023476	FOXJ1 (ENSSVLG00005023500) #19	EXOC7 (ENSSVLG00005023572) #20	ZACN (ENSSVLG00005023709)	GALR2 (ENSSVLG00005023761) #21	ENSSVLG00005023780	SRP68 (ENSSVLG00005023814) #22	EVPL (ENSSVLG00005023880) #23	CDK3 (ENSSVLG00005023973) #24	TEN1 (ENSSVLG00005023999) #25	ACOX1 (ENSSVLG00005024030) #26	FBF1 (ENSSVLG00005024129) #28	MRPL38 (ENSSVLG00005024310) #29	TRIM65 (ENSSVLG00005024357) #30	TRIM47 (ENSSVLG00005024378) #31	ENSSVLG00005024393	ENSSVLG00005024404	WBP2 (ENSSVLG00005024432) #32	UNC13D (ENSSVLG00005024494) #33	UNK (ENSSVLG00005024600) #34	ENSSVLG00005024623	GALK1 (ENSSVLG00005024646) #36