Rodentia_A	ANCESTRAL SPECIES	4	ENSGT00940000159587	ENSGT01040000240451.a.b.a	ENSGT00390000010948	ENSGT00940000157098	ENSGT00940000157309	ENSGT00940000161214 #9	ENSGT00940000154932.A #10	ENSGT00390000013286 #11	ENSGT00940000160095 #12	ENSGT01050000244882.a.a.a.a #13	ENSGT00390000003526 #17	ENSGT00950000182824.a.a.a #18	ENSGT00390000009583 #19	ENSGT00390000018424 #20	ENSGT00390000007890 #21	ENSGT00950000182937.B.b #22	ENSGT00940000157502 #23	ENSGT00940000158420 #24	ENSGT00940000159226 #25	ENSGT00940000160401 #27	ENSGT00940000157643 #28	ENSGT00940000155240.A #29	ENSGT00940000163109 #31	ENSGT00390000012979 #32	ENSGT01050000244940.b #33	ENSGT00940000161222 #34	ENSGT00390000006913 #35	ENSGT00950000185293	ENSGT00940000158692 #36	ENSGT00390000017740.a.a #37	ENSGT00940000158113
Sciuridae	ANCESTRAL SPECIES	14	ENSGT01040000240451.a.b.a	ENSGT00390000010948	ENSGT00940000157098	ENSGT00940000157309	ENSGT00940000161214 #9	ENSGT00530000065303.b	ENSGT00940000154932.A #10	ENSGT00390000013286 #11	ENSGT00940000160095 #12	ENSGT01050000244882.a.a.a.a #13	ENSGT00390000003526 #17	ENSGT00950000182824.a.a.a #18	ENSGT00390000009583 #19	ENSGT00390000018424 #20	ENSGT00390000007890 #21	ENSGT00950000182937.B.b #22	ENSGT00940000157502 #23	ENSGT00940000158420 #24	ENSGT00940000159226 #25	ENSGT00940000160401 #27	ENSGT00940000157643 #28	ENSGT00940000155240.A #29	ENSGT00940000163109 #31	ENSGT00390000012979 #32	ENSGT01050000244940.b #33	ENSGT00940000161222 #34	ENSGT00390000006913 #35	ENSGT00950000185293	ENSGT00940000158692 #36	ENSGT00390000017740.a.a #37	ENSGT00940000158113
Marmotini	ANCESTRAL SPECIES	4	ENSGT00390000010948	ENSGT00390000004428.a.l.a.b	ENSGT00940000157098	ENSGT00940000157309	ENSGT00940000161214 #9	ENSGT00530000065303.b	ENSGT00940000154932.A #10	ENSGT00390000013286 #11	ENSGT00940000160095 #12	ENSGT01050000244882.a.a.a.a #13	ENSGT00390000003526 #17	ENSGT00950000182824.a.a.a #18	ENSGT00390000009583 #19	ENSGT00390000018424 #20	ENSGT00390000007890 #21	ENSGT00950000182937.B.b #22	ENSGT00940000157502 #23	ENSGT00940000158420 #24	ENSGT00940000159226 #25	ENSGT00940000160401 #27	ENSGT00940000157643 #28	ENSGT00940000155240.A #29	ENSGT00940000163109 #31	ENSGT00390000012979.u #32	ENSGT01050000244940.b #33	ENSGT00940000161222 #34	ENSGT00390000006913 #35	ENSGT00950000185293	ENSGT00940000158692 #36	ENSGT00390000017740.a.a #37	ENSGT00940000158113
Marmotini_b	ANCESTRAL SPECIES	3	ENSGT00390000010948	ENSGT00390000004428.a.l.a.b	ENSGT00940000157098	ENSGT00940000157309	ENSGT00940000161214 #9	ENSGT00940000154932.A #10	ENSGT00390000013286 #11	ENSGT00940000160095 #12	ENSGT01050000244882.a.a.a.a #13	ENSGT00940000153481.B.k #14	ENSGT00390000003526 #17	ENSGT00950000182824.a.a.a #18	ENSGT00390000009583 #19	ENSGT00390000018424 #20	ENSGT00390000007890 #21	ENSGT00950000182937.B.b #22	ENSGT00940000157502 #23	ENSGT00940000158420 #24	ENSGT00940000159226 #25	ENSGT00940000160401 #27	ENSGT00940000157643 #28	ENSGT00940000155240.A #29	ENSGT00940000163109 #31	ENSGT00390000012979.u #32	ENSGT01050000244940.b #33	ENSGT00940000161222 #34	ENSGT00390000006913 #35	ENSGT00950000185293	ENSGT00940000158692 #36	ENSGT00390000017740.a.a #37	ENSGT00940000158113
Squirrel	MODERN SPECIES	145			TAFA2 (ENSSTOG00000033207) #9	USP15 (ENSSTOG00000028998) #10	MON2 (ENSSTOG00000001356) #11	PPM1H (ENSSTOG00000001377) #12	AVPR1A (ENSSTOG00000026613) #13	ENSSTOG00000023231 #14	ENSSTOG00000005600 #15	ENSSTOG00000029685 #16	RXYLT1 (ENSSTOG00000004493) #17	SRGAP1 (ENSSTOG00000004509) #18	KICS2 (ENSSTOG00000004546) #19	C12orf56 (ENSSTOG00000027823) #20	XPOT (ENSSTOG00000021805) #21	TBK1 (ENSSTOG00000008299) #22	RASSF3 (ENSSTOG00000013961) #23	GNS (ENSSTOG00000013964) #24	TBC1D30 (ENSSTOG00000013976) #25	ENSSTOG00000022313 #26	WIF1 (ENSSTOG00000028030) #27	LEMD3 (ENSSTOG00000013995) #28	MSRB3 (ENSSTOG00000014011) #29	ENSSTOG00000034254 #30	HMGA2 (ENSSTOG00000026964) #31	LLPH (ENSSTOG00000007005) #32	TMBIM4 (ENSSTOG00000026381) #33	IRAK3 (ENSSTOG00000007050) #34	HELB (ENSSTOG00000007077) #35	GRIP1 (ENSSTOG00000007094) #36	CAND1 (ENSSTOG00000006549) #37
Arctic ground squirrel	MODERN SPECIES	112		SLC16A7 (ENSUPAG00010008556)	TAFA2 (ENSUPAG00010008540) #9	ENSUPAG00010008537	USP15 (ENSUPAG00010008489) #10	MON2 (ENSUPAG00010008338) #11	PPM1H (ENSUPAG00010008312) #12	AVPR1A (ENSUPAG00010008296) #13	ENSUPAG00010008285 #14	ENSUPAG00010008277 #15	RXYLT1 (ENSUPAG00010008266) #17	SRGAP1 (ENSUPAG00010008211) #18	KICS2 (ENSUPAG00010008203) #19	C12orf56 (ENSUPAG00010008180) #20	XPOT (ENSUPAG00010008109) #21	TBK1 (ENSUPAG00010008090) #22	RASSF3 (ENSUPAG00010008067) #23	GNS (ENSUPAG00010008048) #24	TBC1D30 (ENSUPAG00010008028) #25	ENSUPAG00010008025	WIF1 (ENSUPAG00010008014) #27
Alpin marmot	MODERN SPECIES	11	LRIG3 (ENSMMMG00000010368)	SLC16A7 (ENSMMMG00000010337)	ENSMMMG00000010307 #14	TAFA2 (ENSMMMG00000010293) #9	ENSMMMG00000010275	USP15 (ENSMMMG00000010151) #10	MON2 (ENSMMMG00000009982) #11	ENSMMMG00000009908 #12	ENSMMMG00000009865	AVPR1A (ENSMMMG00000009852) #13	RXYLT1 (ENSMMMG00000009819) #17	SRGAP1 (ENSMMMG00000009676) #18	KICS2 (ENSMMMG00000009660) #19	C12orf56 (ENSMMMG00000009638) #20	XPOT (ENSMMMG00000009584) #21	TBK1 (ENSMMMG00000009544) #22	RASSF3 (ENSMMMG00000009518) #23	GNS (ENSMMMG00000009494) #24	TBC1D30 (ENSMMMG00000009473) #25	WIF1 (ENSMMMG00000009439) #27	LEMD3 (ENSMMMG00000009385) #28	MSRB3 (ENSMMMG00000009343) #29	ENSMMMG00000009294 #30	ENSMMMG00000009276 #32	TMBIM4 (ENSMMMG00000009259) #33	IRAK3 (ENSMMMG00000009224) #34	ENSMMMG00000009204	HELB (ENSMMMG00000009105) #35	GRIP1 (ENSMMMG00000006382) #36	CAND1 (ENSMMMG00000006359) #37	DYRK2 (ENSMMMG00000006354)
Eurasian red squirrel	MODERN SPECIES	14	LRIG3 (ENSSVLG00005016786)	SLC16A7 (ENSSVLG00005017200)	TAFA2 (ENSSVLG00005017243) #9	ENSSVLG00005017329	USP15 (ENSSVLG00005017376) #10	MON2 (ENSSVLG00005017702) #11	ENSSVLG00005019352	PPM1H (ENSSVLG00005019542) #12	ENSSVLG00005019644 #13	RXYLT1 (ENSSVLG00005019761) #17	SRGAP1 (ENSSVLG00005019853) #18	ENSSVLG00005019929	KICS2 (ENSSVLG00005019971) #19	C12orf56 (ENSSVLG00005020067) #20	XPOT (ENSSVLG00005010925) #21	TBK1 (ENSSVLG00005011016) #22	RASSF3 (ENSSVLG00005011138) #23	GNS (ENSSVLG00005011208) #24	ENSSVLG00005011581	TBC1D30 (ENSSVLG00005011647) #25	ENSSVLG00005011893	WIF1 (ENSSVLG00005011932) #27	LEMD3 (ENSSVLG00005011973) #28	MSRB3 (ENSSVLG00005012047) #29	HMGA2 (ENSSVLG00005012191) #31	ENSSVLG00005012465 #32	TMBIM4 (ENSSVLG00005012512) #33	IRAK3 (ENSSVLG00005012607) #34	HELB (ENSSVLG00005012893) #35	GRIP1 (ENSSVLG00005013349) #36	ENSSVLG00005013442
Hystricomorpha	ANCESTRAL SPECIES	9	ENSGT00940000159587	ENSGT01040000240451.a.b.a	ENSGT00390000010948	ENSGT00940000157098	ENSGT00940000157309	ENSGT00940000161214 #9	ENSGT00940000154932.A #10	ENSGT00390000013286 #11	ENSGT00940000160095 #12	ENSGT01050000244882.a.a.a.a #13	ENSGT00390000003526 #17	ENSGT00950000182824.a.a.a #18	ENSGT00390000009583 #19	ENSGT00390000018424 #20	ENSGT00390000007890 #21	ENSGT00950000182937.B.b #22	ENSGT00940000157502 #23	ENSGT00940000158420 #24	ENSGT00940000159226 #25	ENSGT00940000160401 #27	ENSGT00940000157643 #28	ENSGT00940000155240.A #29	ENSGT00940000163109 #31	ENSGT00390000012979 #32	ENSGT01050000244940.b #33	ENSGT00940000161222 #34	ENSGT00390000006913 #35	ENSGT00940000158692 #36	ENSGT00390000017740.a.a #37	ENSGT00940000158113	ENSGT00390000007831
Naked mole-rat female	MODERN SPECIES	8	ENSHGLG00000016131 #11	ENSHGLG00000039710	ENSHGLG00000049877	ENSHGLG00000013476 #12	ENSHGLG00000034771	ENSHGLG00000016300 #13	ENSHGLG00000035338	RXYLT1 (ENSHGLG00000014305) #17	ENSHGLG00000035246	SRGAP1 (ENSHGLG00000009171) #18	KICS2 (ENSHGLG00000036040) #19	ENSHGLG00000036595	ENSHGLG00000011036 #20	ENSHGLG00000032357	XPOT (ENSHGLG00000005833) #21	ENSHGLG00000016725 #22	ENSHGLG00000021064	ENSHGLG00000043214	ENSHGLG00000034507 #23	ENSHGLG00000017335 #24	ENSHGLG00000001799	TBC1D30 (ENSHGLG00000038485) #25	ENSHGLG00000037140	WIF1 (ENSHGLG00000011348) #27	ENSHGLG00000039179	LEMD3 (ENSHGLG00000010766) #28	ENSHGLG00000035404	MSRB3 (ENSHGLG00000050004) #29	ENSHGLG00000009103	HMGA2 (ENSHGLG00000006760) #31	ENSHGLG00000047690 #32
Hystricomorpha_a	ANCESTRAL SPECIES	7	ENSGT00940000159587	ENSGT01040000240451.a.b.a	ENSGT00390000010948	ENSGT00940000157098	ENSGT00940000157309	ENSGT00940000161214 #9	ENSGT00940000154932.A #10	ENSGT00390000013286 #11	ENSGT00940000160095 #12	ENSGT01050000244882.a.a.a.a #13	ENSGT00390000003526 #17	ENSGT00950000182824.a.a.a #18	ENSGT00390000009583 #19	ENSGT00390000018424 #20	ENSGT00390000007890 #21	ENSGT00950000182937.B.b #22	ENSGT00940000157502 #23	ENSGT00940000158420 #24	ENSGT00940000159226 #25	ENSGT00940000160401 #27	ENSGT00940000157643 #28	ENSGT00940000155240.A #29	ENSGT00940000163109 #31	ENSGT00390000012979 #32	ENSGT01050000244940.b #33	ENSGT00940000161222 #34	ENSGT00390000006913 #35	ENSGT00940000158692 #36	ENSGT00390000017740.a.a #37	ENSGT00940000158113	ENSGT00390000007831
Guinea pig	MODERN SPECIES	9	AVIL (ENSCPOG00000012226)	CTDSP2 (ENSCPOG00000039281)	ATP23 (ENSCPOG00000039300)	LRIG3 (ENSCPOG00000011502)	SLC16A7 (ENSCPOG00000010219)	TAFA2 (ENSCPOG00000035228) #9	USP15 (ENSCPOG00000000584) #10	MON2 (ENSCPOG00000032417) #11	PPM1H (ENSCPOG00000011289) #12	AVPR1A (ENSCPOG00000034144) #13	RXYLT1 (ENSCPOG00000026809) #17	SRGAP1 (ENSCPOG00000011928) #18	KICS2 (ENSCPOG00000032413) #19	C12orf56 (ENSCPOG00000010841) #20	XPOT (ENSCPOG00000027042) #21	TBK1 (ENSCPOG00000010846) #22	RASSF3 (ENSCPOG00000022411) #23	GNS (ENSCPOG00000014211) #24	TBC1D30 (ENSCPOG00000008046) #25	WIF1 (ENSCPOG00000001781) #27	LEMD3 (ENSCPOG00000034901) #28	MSRB3 (ENSCPOG00000004841) #29	HMGA2 (ENSCPOG00000013133) #31	LLPH (ENSCPOG00000032020) #32	TMBIM4 (ENSCPOG00000007728) #33	IRAK3 (ENSCPOG00000005020) #34	HELB (ENSCPOG00000013679) #35	GRIP1 (ENSCPOG00000013682) #36	CAND1 (ENSCPOG00000001791) #37	DYRK2 (ENSCPOG00000000608)	IFNG (ENSCPOG00000011038)
Hystricomorpha_b	ANCESTRAL SPECIES	13	ENSGT00940000159587	ENSGT01040000240451.a.b.a	ENSGT00390000010948	ENSGT00940000157098	ENSGT00940000157309	ENSGT00940000161214 #9	ENSGT00940000154932.A #10	ENSGT00390000013286 #11	ENSGT00940000160095 #12	ENSGT01050000244882.a.a.a.a #13	ENSGT00390000003526 #17	ENSGT00950000182824.a.a.a #18	ENSGT00390000009583 #19	ENSGT00390000018424 #20	ENSGT00390000007890 #21	ENSGT00950000182937.B.b #22	ENSGT00940000157502 #23	ENSGT00940000158420 #24	ENSGT00940000159226 #25	ENSGT00940000160401 #27	ENSGT00940000157643 #28	ENSGT00940000155240.A #29	ENSGT00940000163109 #31	ENSGT00390000012979 #32	ENSGT01050000244940.b #33	ENSGT00940000161222 #34	ENSGT00390000006913 #35	ENSGT00940000158692 #36	ENSGT00390000017740.a.a #37	ENSGT00940000158113	ENSGT00390000007831
Long-tailed chinchilla	MODERN SPECIES	165	AVIL (ENSCLAG00000009924)	CTDSP2 (ENSCLAG00000015950)	ATP23 (ENSCLAG00000010629)	LRIG3 (ENSCLAG00000010704)	SLC16A7 (ENSCLAG00000011812)	TAFA2 (ENSCLAG00000015199) #9	USP15 (ENSCLAG00000015158) #10	MON2 (ENSCLAG00000012321) #11	ENSCLAG00000011671 #12	AVPR1A (ENSCLAG00000012006) #13	RXYLT1 (ENSCLAG00000013618) #17	SRGAP1 (ENSCLAG00000009523) #18	KICS2 (ENSCLAG00000010638) #19	C12orf56 (ENSCLAG00000009870) #20	XPOT (ENSCLAG00000011382) #21	TBK1 (ENSCLAG00000010356) #22	RASSF3 (ENSCLAG00000010281) #23	GNS (ENSCLAG00000009311) #24	TBC1D30 (ENSCLAG00000009735) #25	WIF1 (ENSCLAG00000010639) #27	ENSCLAG00000013071 #28	MSRB3 (ENSCLAG00000015403) #29	LLPH (ENSCLAG00000015620) #32	TMBIM4 (ENSCLAG00000014532) #33	IRAK3 (ENSCLAG00000015713) #34	HELB (ENSCLAG00000014559) #35	GRIP1 (ENSCLAG00000009667) #36	CAND1 (ENSCLAG00000015035) #37	DYRK2 (ENSCLAG00000013694)	IFNG (ENSCLAG00000009541)	IL26 (ENSCLAG00000009604)
Degu	MODERN SPECIES	88								ENSODEG00000004249	ENSODEG00000004274	RXYLT1 (ENSODEG00000004285) #17	SRGAP1 (ENSODEG00000004511) #18	KICS2 (ENSODEG00000004419) #19	C12orf56 (ENSODEG00000004449) #20	ENSODEG00000019051	XPOT (ENSODEG00000004607) #21	TBK1 (ENSODEG00000004876) #22	RASSF3 (ENSODEG00000004894) #23	GNS (ENSODEG00000004924) #24	ENSODEG00000019272	TBC1D30 (ENSODEG00000006065) #25	ENSODEG00000006151	ENSODEG00000006260	WIF1 (ENSODEG00000004030) #27	LEMD3 (ENSODEG00000004132) #28	MSRB3 (ENSODEG00000004460) #29	HMGA2 (ENSODEG00000004075) #31	ENSODEG00000004268 #32	TMBIM4 (ENSODEG00000004306) #33	IRAK3 (ENSODEG00000004353) #34	HELB (ENSODEG00000004542) #35	GRIP1 (ENSODEG00000004813) #36