Chordata	ANCESTRAL SPECIES																	ENSGT00940000157069 #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000157069 #22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000157069 #22
Euteleostomi	ANCESTRAL SPECIES	173											ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00740000117073	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000164942 #27	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00390000015123	ENSGT00940000156805	ENSGT00940000157884	ENSGT00950000185259	ENSGT00410000025800
Sarcopterygii	ANCESTRAL SPECIES	87	ENSGT00670000098452	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000169979	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00740000117073	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00940000164942 #27	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00950000185259	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b
Tetrapoda	ANCESTRAL SPECIES	13	ENSGT00390000010822 #7	ENSGT00670000098452	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000169979	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00940000164942 #27	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00950000185259	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b
Amniota	ANCESTRAL SPECIES	18	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00940000170057	ENSGT00390000006454 #13	ENSGT00940000169979	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00940000164942 #27	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00950000185259	ENSGT00940000157884	ENSGT00940000156805	ENSGT01030000235145
Mammalia	ANCESTRAL SPECIES	33	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00940000170057	ENSGT00390000006454 #13	ENSGT00940000169979	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00950000185259	ENSGT00940000157884	ENSGT00940000156805	ENSGT01030000235145	ENSGT00390000015123.b
Theria	ANCESTRAL SPECIES	25	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00940000170057	ENSGT00390000006454 #13	ENSGT00940000169979	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00950000185259	ENSGT00940000157884	ENSGT00940000156805	ENSGT01030000235145	ENSGT00390000015123.b
Eutheria	ANCESTRAL SPECIES	4	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00940000170057	ENSGT00390000006454 #13	ENSGT00940000169979	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00950000185259	ENSGT00940000157884	ENSGT00940000156805	ENSGT01030000235145	ENSGT00390000015123.b
Boreoeutheria	ANCESTRAL SPECIES	4	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00940000170057	ENSGT00390000006454 #13	ENSGT00940000169979	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00950000185259	ENSGT00940000157884	ENSGT00940000156805	ENSGT01030000235145	ENSGT00390000015123.b
Euarchontoglires	ANCESTRAL SPECIES	4	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000169979	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00950000185259	ENSGT00940000157884	ENSGT00940000156805	ENSGT01030000235145	ENSGT00390000015123.b
Primates	ANCESTRAL SPECIES	3	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000169979	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00950000185259	ENSGT00940000157884	ENSGT00940000156805	ENSGT01030000235145	ENSGT00390000015123.b
Strepsirrhini	ANCESTRAL SPECIES	4	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000169979	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Lemuriformes	ANCESTRAL SPECIES	2	ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Lemuriformes_a	ANCESTRAL SPECIES		ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Greater bamboo lemur	MODERN SPECIES	59	ZNHIT3 (ENSPSMG00000011614) #7	CA4 (ENSPSMG00000011627) #8	ENSPSMG00000011700 #9	CHCT1 (ENSPSMG00000011749) #10	APPBP2 (ENSPSMG00000011771) #11	PPM1D (ENSPSMG00000011798) #12	BCAS3 (ENSPSMG00000012239) #13	ENSPSMG00000012423 #14	TBX2 (ENSPSMG00000012434) #15	TBX4 (ENSPSMG00000012454) #16	BRIP1 (ENSPSMG00000012482) #17	INTS2 (ENSPSMG00000012510) #18	MED13 (ENSPSMG00000012622) #19	RNFT1 (ENSPSMG00000012709) #20	RPS6KB1 (ENSPSMG00000012813) #21	TUBD1 (ENSPSMG00000012993) #22	VMP1 (ENSPSMG00000013121) #23	PTRH2 (ENSPSMG00000013145) #24	CLTC (ENSPSMG00000013323) #25	DHX40 (ENSPSMG00000013562) #26	ENSPSMG00000013650 #27	GDPD1 (ENSPSMG00000013681) #28
Coquerels sifaka	MODERN SPECIES	407							BCAS3 (ENSPCOG00000024813) #13	ENSPCOG00000017009	TBX2 (ENSPCOG00000011352) #15	TBX4 (ENSPCOG00000006143) #16	ENSPCOG00000018684	INTS2 (ENSPCOG00000015040) #18	MED13 (ENSPCOG00000016066) #19	RNFT1 (ENSPCOG00000024338) #20	RPS6KB1 (ENSPCOG00000028271) #21	TUBD1 (ENSPCOG00000026669) #22	ENSPCOG00000002786	VMP1 (ENSPCOG00000026428) #23	PTRH2 (ENSPCOG00000013419) #24	CLTC (ENSPCOG00000008766) #25	DHX40 (ENSPCOG00000008219) #26	YPEL2 (ENSPCOG00000019011)	GDPD1 (ENSPCOG00000024721) #28	SMG8 (ENSPCOG00000000392)	PRR11 (ENSPCOG00000023197)	SKA2 (ENSPCOG00000023633)	TRIM37 (ENSPCOG00000020822)	ENSPCOG00000026849	PPM1E (ENSPCOG00000019125)	RAD51C (ENSPCOG00000023848)	TEX14 (ENSPCOG00000028546)
Mouse lemur	MODERN SPECIES	7	CA4 (ENSMICG00000013382) #8	ENSMICG00000013391 #9	CHCT1 (ENSMICG00000013434) #10	APPBP2 (ENSMICG00000030699) #11	PPM1D (ENSMICG00000014711) #12	BCAS3 (ENSMICG00000016612) #13	TBX2 (ENSMICG00000016649) #15	TBX4 (ENSMICG00000016673) #16	ENSMICG00000028862	BRIP1 (ENSMICG00000016835) #17	INTS2 (ENSMICG00000016853) #18	MED13 (ENSMICG00000016865) #19	ENSMICG00000047597	ENSMICG00000027132 #20	RPS6KB1 (ENSMICG00000007960) #21	TUBD1 (ENSMICG00000007950) #22	VMP1 (ENSMICG00000045844) #23	ENSMICG00000042799	ENSMICG00000032675 #24	CLTC (ENSMICG00000003591) #25	DHX40 (ENSMICG00000027647) #26	YPEL2 (ENSMICG00000046246)	GDPD1 (ENSMICG00000004589) #28	SMG8 (ENSMICG00000006523)	ENSMICG00000044273	SKA2 (ENSMICG00000032654)	TRIM37 (ENSMICG00000009211)	ENSMICG00000027264	ENSMICG00000044385	PPM1E (ENSMICG00000031392)	RAD51C (ENSMICG00000028544)
Bushbaby	MODERN SPECIES	209	ENSOGAG00000003441 #9	ENSOGAG00000028737	CHCT1 (ENSOGAG00000006794) #10	APPBP2 (ENSOGAG00000026069) #11	PPM1D (ENSOGAG00000001105) #12	BCAS3 (ENSOGAG00000014800) #13	ENSOGAG00000026229	TBX2 (ENSOGAG00000014815) #15	TBX4 (ENSOGAG00000007474) #16	ENSOGAG00000034076	BRIP1 (ENSOGAG00000007479) #17	INTS2 (ENSOGAG00000007486) #18	MED13 (ENSOGAG00000007488) #19	RNFT1 (ENSOGAG00000007816) #20	RPS6KB1 (ENSOGAG00000007813) #21	TUBD1 (ENSOGAG00000007811) #22	VMP1 (ENSOGAG00000007808) #23	ENSOGAG00000026779 #24	CLTC (ENSOGAG00000024514) #25	DHX40 (ENSOGAG00000007790) #26	YPEL2 (ENSOGAG00000029581)	GDPD1 (ENSOGAG00000005842) #28	SMG8 (ENSOGAG00000008433)	ENSOGAG00000005839	SKA2 (ENSOGAG00000026072)	ENSOGAG00000028941	TRIM37 (ENSOGAG00000012158)	PPM1E (ENSOGAG00000030979)	RAD51C (ENSOGAG00000004940)	TEX14 (ENSOGAG00000004934)	ENSOGAG00000032885
Haplorrhini	ANCESTRAL SPECIES	6	ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00950000185259	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146
Simiiformes	ANCESTRAL SPECIES	7	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000165945	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00950000185259	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000002414.ab	ENSGT00390000015123.b
Catarrhini	ANCESTRAL SPECIES	8	ENSGT01050000245374	ENSGT00940000155797 #9	ENSGT00940000170812	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00860000135714	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00950000185259	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000002414.ab	ENSGT00390000015123.b
Hominoidea	ANCESTRAL SPECIES	13	ENSGT01050000245374	ENSGT00940000155797 #9	ENSGT00940000170812	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00860000135714	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000002414.ab	ENSGT00390000015123.b	ENSGT00390000018146
Hominidae	ANCESTRAL SPECIES	16	ENSGT00940000170812	ENSGT00940000155797.u #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00860000135714	ENSGT00940000158882 #16	ENSGT00940000166484.b	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000002414.ab	ENSGT00390000015123.b	ENSGT00390000018146
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	1	ENSGT00940000158882 #16	ENSGT00860000135714	ENSGT00940000158439 #15	ENSGT00390000006454 #13	ENSGT00940000155672 #12	ENSGT00390000010722 #11	ENSGT00390000003769 #10	ENSGT00940000155797.u #9	ENSGT00940000170812	ENSGT00940000155797.v.a #9	ENSGT00940000155690 #8	ENSGT00390000016675.j.a	ENSGT00390000000673.b.b	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000002414.ab	ENSGT00390000015123.b	ENSGT00390000018146
Homo/Pan group	ANCESTRAL SPECIES	2	ENSGT00940000158882 #16	ENSGT00860000135714	ENSGT00940000158439 #15	ENSGT00390000006454 #13	ENSGT00940000155672 #12	ENSGT00390000010722 #11	ENSGT00390000003769 #10	ENSGT00940000155797.u #9	ENSGT00940000170812	ENSGT00940000155797.v.a #9	ENSGT00940000155690 #8	ENSGT00390000016675.j.a	ENSGT00390000000673.b.b	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000002414.ab	ENSGT00390000015123.b	ENSGT00390000018146
Pan	ANCESTRAL SPECIES	3	ENSGT00940000158439 #15	ENSGT00390000006454 #13	ENSGT00940000155672 #12	ENSGT00390000010722 #11	ENSGT00990000203720.a.b.a.b	ENSGT00390000003769 #10	ENSGT01050000245374	ENSGT00940000170812	ENSGT00940000155797.v.a #9	ENSGT00940000155690 #8	ENSGT00390000016675.j.a	ENSGT00940000154908.i	ENSGT00390000000673.b.b	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000158976
Chimpanzee	MODERN SPECIES	8	TBX2 (ENSPTRG00000009489) #15	BCAS3 (ENSPTRG00000009488) #13	PPM1D (ENSPTRG00000009487) #12	APPBP2 (ENSPTRG00000009486) #11	ENSPTRG00000046811	CHCT1 (ENSPTRG00000009485) #10	ENSPTRG00000045898	ENSPTRG00000050383	USP32 (ENSPTRG00000009483) #9	CA4 (ENSPTRG00000009482) #8	ENSPTRG00000047864	ENSPTRG00000008885	RNFT1 (ENSPTRG00000009480) #20	RPS6KB1 (ENSPTRG00000009477) #21	ENSPTRG00000047370	TUBD1 (ENSPTRG00000009476) #22	VMP1 (ENSPTRG00000009475) #23	PTRH2 (ENSPTRG00000009474) #24	ENSPTRG00000051451	CLTC (ENSPTRG00000009472) #25	DHX40 (ENSPTRG00000009471) #26	YPEL2 (ENSPTRG00000009468) #27	GDPD1 (ENSPTRG00000009467) #28	SMG8 (ENSPTRG00000009465)	PRR11 (ENSPTRG00000009464)	SKA2 (ENSPTRG00000009462)	TRIM37 (ENSPTRG00000009460)	PPM1E (ENSPTRG00000009459)	RAD51C (ENSPTRG00000009458)	TEX14 (ENSPTRG00000009457)	SEPTIN4 (ENSPTRG00000009455)
Bonobo	MODERN SPECIES	8	INTS2 (ENSPPAG00000043030) #18	BRIP1 (ENSPPAG00000037024) #17	NACA2 (ENSPPAG00000006173)	TBX4 (ENSPPAG00000038997) #16	ENSPPAG00000010851	TBX2 (ENSPPAG00000030701) #15	BCAS3 (ENSPPAG00000030607) #13	PPM1D (ENSPPAG00000012261) #12	APPBP2 (ENSPPAG00000033120) #11	ENSPPAG00000029041	CHCT1 (ENSPPAG00000011437) #10	ENSPPAG00000001689	HEATR6 (ENSPPAG00000037313)	RNFT1 (ENSPPAG00000032484) #20	RPS6KB1 (ENSPPAG00000028449) #21	TUBD1 (ENSPPAG00000030695) #22	VMP1 (ENSPPAG00000031521) #23	PTRH2 (ENSPPAG00000032040) #24	CLTC (ENSPPAG00000028788) #25	DHX40 (ENSPPAG00000032782) #26	YPEL2 (ENSPPAG00000032588)	GDPD1 (ENSPPAG00000033723) #28	SMG8 (ENSPPAG00000028136)	PRR11 (ENSPPAG00000043129)	SKA2 (ENSPPAG00000036052)	TRIM37 (ENSPPAG00000038094)	PPM1E (ENSPPAG00000033702)	RAD51C (ENSPPAG00000035555)	TEX14 (ENSPPAG00000032928)	SEPTIN4 (ENSPPAG00000028255)	MTMR4 (ENSPPAG00000039667)
Human	MODERN SPECIES	8	INTS2 (ENSG00000108506) #18	BRIP1 (ENSG00000136492) #17	NACA2 (ENSG00000253506)	TBX4 (ENSG00000121075) #16	TBX2 (ENSG00000121068) #15	BCAS3 (ENSG00000141376) #13	PPM1D (ENSG00000170836) #12	APPBP2 (ENSG00000062725) #11	CHCT1 (ENSG00000141371) #10	USP32 (ENSG00000170832) #9	CA4 (ENSG00000167434) #8	HEATR6 (ENSG00000068097)	RNFT1 (ENSG00000189050) #20	ENSG00000267318	RPS6KB1 (ENSG00000108443) #21	TUBD1 (ENSG00000108423) #22	VMP1 (ENSG00000062716) #23	PTRH2 (ENSG00000141378) #24	CLTC (ENSG00000141367) #25	DHX40 (ENSG00000108406) #26	YPEL2 (ENSG00000175155)	GDPD1 (ENSG00000153982) #28	SMG8 (ENSG00000167447)	ENSG00000265303	PRR11 (ENSG00000068489)	SKA2 (ENSG00000182628)	TRIM37 (ENSG00000108395)	PPM1E (ENSG00000175175)	RAD51C (ENSG00000108384)	IGBP1C (ENSG00000266826)	TEX14 (ENSG00000121101)
Gorilla	MODERN SPECIES	18	TBX4 (ENSGGOG00000013904) #16	ENSGGOG00000009151	TBX2 (ENSGGOG00000009144) #15	BCAS3 (ENSGGOG00000009123) #13	PPM1D (ENSGGOG00000009046) #12	APPBP2 (ENSGGOG00000008922) #11	ENSGGOG00000036945	USP32 (ENSGGOG00000011515) #9	ENSGGOG00000024144	ENSGGOG00000023444	CA4 (ENSGGOG00000011509) #8	HEATR6 (ENSGGOG00000016649)	ENSGGOG00000042982 #26	RNFT1 (ENSGGOG00000011189) #20	ENSGGOG00000024860 #21	TUBD1 (ENSGGOG00000007246) #22	ENSGGOG00000043796	VMP1 (ENSGGOG00000002322) #23	PTRH2 (ENSGGOG00000007957) #24	CLTC (ENSGGOG00000007938) #25	ENSGGOG00000000426 #26	YPEL (ENSGGOG00000037738)	GDPD1 (ENSGGOG00000003001) #28	SMG8 (ENSGGOG00000002998)	PRR11 (ENSGGOG00000001978)	ENSGGOG00000037747	TRIM37 (ENSGGOG00000025045)	PPM1E (ENSGGOG00000043086)	ENSGGOG00000041438	ENSGGOG00000038800	ENSGGOG00000036600
Orangutan	MODERN SPECIES	8	MYO19 (ENSPPYG00000008211)	ENSPPYG00000008513	CHCT1 (ENSPPYG00000008515) #10	ENSPPYG00000037147	APPBP2 (ENSPPYG00000008516) #11	PPM1D (ENSPPYG00000008517) #12	BCAS3 (ENSPPYG00000008797) #13	TBX2 (ENSPPYG00000008798) #15	TBX4 (ENSPPYG00000008800) #16	NACA2 (ENSPPYG00000008801)	BRIP1 (ENSPPYG00000008802) #17	INTS2 (ENSPPYG00000008803) #18	MED13 (ENSPPYG00000008804) #19	RNFT1 (ENSPPYG00000008806) #20	RPS6KB1 (ENSPPYG00000008807) #21	TUBD1 (ENSPPYG00000008808) #22	VMP1 (ENSPPYG00000008809) #23	PTRH2 (ENSPPYG00000008810) #24	CLTC (ENSPPYG00000008811) #25	DHX40 (ENSPPYG00000008812) #26	YPEL2 (ENSPPYG00000037654)	GDPD1 (ENSPPYG00000008223) #28	SMG8 (ENSPPYG00000008224)	PRR11 (ENSPPYG00000008225)	SKA2 (ENSPPYG00000008814)	ENSPPYG00000041777	TRIM37 (ENSPPYG00000008815)	PPM1E (ENSPPYG00000008816)	RAD51C (ENSPPYG00000008226)	IGBP1C (ENSPPYG00000034894)	TEX14 (ENSPPYG00000008227)
Gibbon	MODERN SPECIES	4	ENSNLEG00000033351	ENSNLEG00000035218	APPBP2 (ENSNLEG00000000368) #11	PPM1D (ENSNLEG00000000379) #12	BCAS3 (ENSNLEG00000000387) #13	TBX2 (ENSNLEG00000000423) #15	ENSNLEG00000000426	TBX4 (ENSNLEG00000000427) #16	BRIP1 (ENSNLEG00000000435) #17	INTS2 (ENSNLEG00000000462) #18	MED13 (ENSNLEG00000000545) #19	ENSNLEG00000027980	ENSNLEG00000032483	RNFT1 (ENSNLEG00000000616) #20	RPS6KB1 (ENSNLEG00000000636) #21	TUBD1 (ENSNLEG00000000693) #22	ENSNLEG00000033333 #23	PTRH2 (ENSNLEG00000000792) #24	ENSNLEG00000033579	CLTC (ENSNLEG00000000796) #25	ENSNLEG00000029957	YPEL2 (ENSNLEG00000029005)	GDPD1 (ENSNLEG00000008557) #28	SMG8 (ENSNLEG00000008551)	PRR11 (ENSNLEG00000008534)	SKA2 (ENSNLEG00000008530)	TRIM37 (ENSNLEG00000008462)	PPM1E (ENSNLEG00000008452)	RAD51C (ENSNLEG00000008427)	TEX14 (ENSNLEG00000008317)	SEPTIN4 (ENSNLEG00000008245)
Cercopithecidae	ANCESTRAL SPECIES	6	ENSGT00940000165945	ENSGT01050000245374	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00860000135714	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00940000154173.A.a.c.b	ENSGT00390000009588.i	ENSGT00410000025800	ENSGT00950000185259	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000002414.ab
Cercopithecinae	ANCESTRAL SPECIES	4	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00860000135714	ENSGT00940000158882 #16	ENSGT00940000166484.b	ENSGT00440000033468.d.a.a	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00940000154173.A.a.c.b	ENSGT00390000009588.i	ENSGT00410000025800	ENSGT00950000185259	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000002414.ab
Cercopithecinae_a	ANCESTRAL SPECIES	4	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00860000135714	ENSGT00940000158882 #16	ENSGT00940000166484.b	ENSGT00440000033468.d.a.a	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00940000154173.A.a.c.b	ENSGT00390000009588.i	ENSGT00410000025800	ENSGT00950000185259	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000002414.ab
Macaca	ANCESTRAL SPECIES	4	ENSGT00940000165945	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00860000135714	ENSGT00940000158882 #16	ENSGT00440000033468.d.a.a	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00940000154173.A.a.c.b	ENSGT00510000046704.a	ENSGT00390000009588.i	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000002414.ab	ENSGT00390000015123.b
Pig-tailed macaque	MODERN SPECIES	541	ENSMNEG00000042038 #9	CHCT1 (ENSMNEG00000032058) #10	APPBP2 (ENSMNEG00000031571) #11	PPM1D (ENSMNEG00000033293) #12	BCAS3 (ENSMNEG00000030205) #13	TBX2 (ENSMNEG00000038002) #15	ENSMNEG00000029116	TBX4 (ENSMNEG00000031407) #16	ENSMNEG00000029514	BRIP1 (ENSMNEG00000040728) #17	INTS2 (ENSMNEG00000035838) #18	MED13 (ENSMNEG00000042012) #19	ENSMNEG00000034412	RNFT1 (ENSMNEG00000033585) #20	RPS6KB1 (ENSMNEG00000045115) #21	TUBD1 (ENSMNEG00000020432) #22	VMP1 (ENSMNEG00000045570) #23	PTRH2 (ENSMNEG00000037063) #24	CLTC (ENSMNEG00000022607) #25	DHX40 (ENSMNEG00000043921) #26	YPEL2 (ENSMNEG00000033354)	GDPD1 (ENSMNEG00000031028) #28	SMG8 (ENSMNEG00000044030)	ENSMNEG00000038245	PRR11 (ENSMNEG00000033124)	SKA2 (ENSMNEG00000035831)	TRIM37 (ENSMNEG00000033651)	PPM1E (ENSMNEG00000000862)	RAD51C (ENSMNEG00000039904)	TEX14 (ENSMNEG00000037884)	SEPTIN4 (ENSMNEG00000036497)
Macaca_a	ANCESTRAL SPECIES	4	ENSGT00940000165945	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT01100000263577.a.a.b.b.a.a.a.a.a.b.b.a.a	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000161627.a.a.a.b.b.b.b.a.a.a.a.a.a.a.b.b.a.a.a.a.a.b	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT01100000263493.a.a.a.b.b.a.b.b	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.i	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000002414.ab	ENSGT00390000015123.b
Crab-eating macaque	MODERN SPECIES	7	ENSMFAG00000058900	ENSMFAG00000060869	CHCT1 (ENSMFAG00000001841) #10	APPBP2 (ENSMFAG00000031643) #11	BCAS3 (ENSMFAG00000041899) #13	ENSMFAG00000052441	TBX2 (ENSMFAG00000038998) #15	TBX4 (ENSMFAG00000048469) #16	ENSMFAG00000055495	BRIP1 (ENSMFAG00000044136) #17	INTS2 (ENSMFAG00000017924) #18	MED13 (ENSMFAG00000013972) #19	ENSMFAG00000052479	RNFT1 (ENSMFAG00000045024) #20	RPS6KB1 (ENSMFAG00000043523) #21	TUBD1 (ENSMFAG00000045455) #22	ENSMFAG00000054364	VMP1 (ENSMFAG00000032772) #23	PTRH2 (ENSMFAG00000036307) #24	CLTC (ENSMFAG00000040097) #25	DHX40 (ENSMFAG00000041526) #26	YPEL2 (ENSMFAG00000058561)	ENSMFAG00000063733	GDPD1 (ENSMFAG00000036599) #28	SMG8 (ENSMFAG00000024874)	PRR11 (ENSMFAG00000000572)	SKA2 (ENSMFAG00000040585)	TRIM37 (ENSMFAG00000038070)	ENSMFAG00000052286	ENSMFAG00000064865	PPM1E (ENSMFAG00000034316)
Rhesus	MODERN SPECIES	7	CHCT1 (ENSMMUG00000016565) #10	APPBP2 (ENSMMUG00000016566) #11	PPM1D (ENSMMUG00000018049) #12	ENSMMUG00000059217	BCAS3 (ENSMMUG00000017197) #13	ENSMMUG00000052098	TBX2 (ENSMMUG00000046656) #15	TBX4 (ENSMMUG00000051933) #16	ENSMMUG00000058639	BRIP1 (ENSMMUG00000009027) #17	INTS2 (ENSMMUG00000007242) #18	MED13 (ENSMMUG00000023750) #19	ENSMMUG00000060768	RPS6KB1 (ENSMMUG00000019305) #21	RNFT1 (ENSMMUG00000009203) #20	TUBD1 (ENSMMUG00000019303) #22	VMP1 (ENSMMUG00000048926) #23	PTRH2 (ENSMMUG00000001572) #24	CLTC (ENSMMUG00000010509) #25	DHX40 (ENSMMUG00000063317) #26	YPEL2 (ENSMMUG00000062501)	ENSMMUG00000062455	GDPD1 (ENSMMUG00000042757) #28	SMG8 (ENSMMUG00000056514)	PRR11 (ENSMMUG00000003390)	SKA2 (ENSMMUG00000039326)	TRIM37 (ENSMMUG00000011443)	PPM1E (ENSMMUG00000052674)	RAD51C (ENSMMUG00000009133)	IGBP1C (ENSMMUG00000032376)	TEX14 (ENSMMUG00000046572)
Cercopithecinae_b	ANCESTRAL SPECIES	20	ENSGT00940000155690 #8	ENSGT01050000245374	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00860000135714	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00940000154173.A.a.c.b	ENSGT00390000009588.i	ENSGT00410000025800	ENSGT00950000185259	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000002414.ab
Olive baboon	MODERN SPECIES	8	ENSPANG00000022153 #9	CHCT1 (ENSPANG00000022167) #10	APPBP2 (ENSPANG00000022164) #11	PPM1D (ENSPANG00000022160) #12	ENSPANG00000008797	BCAS3 (ENSPANG00000022159) #13	TBX2 (ENSPANG00000022158) #15	TBX4 (ENSPANG00000044336) #16	NACA2 (ENSPANG00000008741)	ENSPANG00000037154	BRIP1 (ENSPANG00000022169) #17	INTS2 (ENSPANG00000022170) #18	MED13 (ENSPANG00000022177) #19	RNFT1 (ENSPANG00000022175) #20	RPS6KB1 (ENSPANG00000022171) #21	TUBD1 (ENSPANG00000022250) #22	VMP1 (ENSPANG00000022270) #23	PTRH2 (ENSPANG00000022269) #24	CLTC (ENSPANG00000022267) #25	DHX40 (ENSPANG00000022266) #26	YPEL2 (ENSPANG00000036967)	GDPD1 (ENSPANG00000022263) #28	SMG8 (ENSPANG00000022259)	PRR11 (ENSPANG00000022254)	SKA2 (ENSPANG00000022253)	TRIM37 (ENSPANG00000022252)	ENSPANG00000046501	PPM1E (ENSPANG00000030384)	RAD51C (ENSPANG00000022251)	IGBP1C (ENSPANG00000033492)	TEX14 (ENSPANG00000022303)
Cercopithecinae_d	ANCESTRAL SPECIES	7	ENSGT00940000155690 #8	ENSGT01050000245374	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00860000135714	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00940000154173.A.a.c.b	ENSGT00390000009588.i	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146
Sooty mangabey	MODERN SPECIES	617	ENSCATG00000030236 #9	CHCT1 (ENSCATG00000041845) #10	APPBP2 (ENSCATG00000030340) #11	PPM1D (ENSCATG00000040952) #12	BCAS3 (ENSCATG00000043240) #13	TBX2 (ENSCATG00000037949) #15	ENSCATG00000033321	TBX4 (ENSCATG00000037211) #16	ENSCATG00000012244	BRIP1 (ENSCATG00000041725) #17	INTS2 (ENSCATG00000005965) #18	MED13 (ENSCATG00000044447) #19	RNFT1 (ENSCATG00000038416) #20	RPS6KB1 (ENSCATG00000029159) #21	ENSCATG00000032758	TUBD1 (ENSCATG00000045241) #22	VMP1 (ENSCATG00000013305) #23	PTRH2 (ENSCATG00000043363) #24	CLTC (ENSCATG00000039196) #25	DHX40 (ENSCATG00000030038) #26	YPEL2 (ENSCATG00000044532)	GDPD1 (ENSCATG00000041802) #28	SMG8 (ENSCATG00000043523)	ENSCATG00000035286	PRR11 (ENSCATG00000025011)	SKA2 (ENSCATG00000031564)	TRIM37 (ENSCATG00000042239)	PPM1E (ENSCATG00000037902)	RAD51C (ENSCATG00000040084)	TEX14 (ENSCATG00000034188)	SEPTIN4 (ENSCATG00000032851)
Drill	MODERN SPECIES	752							PPM1D (ENSMLEG00000027668) #12	BCAS3 (ENSMLEG00000041265) #13	TBX2 (ENSMLEG00000034491) #15	TBX4 (ENSMLEG00000040469) #16	BRIP1 (ENSMLEG00000037601) #17	INTS2 (ENSMLEG00000029051) #18	MED13 (ENSMLEG00000039991) #19	RNFT1 (ENSMLEG00000038940) #20	RPS6KB1 (ENSMLEG00000027633) #21	TUBD1 (ENSMLEG00000034691) #22	ENSMLEG00000039383	VMP1 (ENSMLEG00000035223) #23	PTRH2 (ENSMLEG00000028260) #24	CLTC (ENSMLEG00000030353) #25	DHX40 (ENSMLEG00000043033) #26	YPEL2 (ENSMLEG00000042093)	GDPD1 (ENSMLEG00000033298) #28	SMG8 (ENSMLEG00000039702)	PRR11 (ENSMLEG00000036110)	ENSMLEG00000043421	SKA2 (ENSMLEG00000027839)	TRIM37 (ENSMLEG00000037127)	PPM1E (ENSMLEG00000040528)	RAD51C (ENSMLEG00000044263)	TEX14 (ENSMLEG00000027370)
Vervet Monkey	MODERN SPECIES	7	ENSCSAG00000006027 #7	CA4 (ENSCSAG00000006017) #8	ENSCSAG00000006004 #9	CHCT1 (ENSCSAG00000005993) #10	APPBP2 (ENSCSAG00000005988) #11	PPM1D (ENSCSAG00000005981) #12	ENSCSAG00000005959 #13	TBX2 (ENSCSAG00000005940) #15	TBX4 (ENSCSAG00000005933) #16	ENSCSAG00000000553	BRIP1 (ENSCSAG00000005928) #17	INTS2 (ENSCSAG00000005911) #18	MED13 (ENSCSAG00000005903) #19	RNFT1 (ENSCSAG00000005893) #20	RPS6KB1 (ENSCSAG00000005890) #21	TUBD1 (ENSCSAG00000005884) #22	VMP1 (ENSCSAG00000005874) #23	PTRH2 (ENSCSAG00000000552) #24	CLTC (ENSCSAG00000005869) #25	DHX40 (ENSCSAG00000005860) #26	YPEL2 (ENSCSAG00000005856)	GDPD1 (ENSCSAG00000005854) #28	SMG8 (ENSCSAG00000005852)	PRR11 (ENSCSAG00000005850)	ENSCSAG00000005844	SKA2 (ENSCSAG00000005838)	TRIM37 (ENSCSAG00000005835)	PPM1E (ENSCSAG00000005828)	RAD51C (ENSCSAG00000005814)	ENSCSAG00000005804	TEX14 (ENSCSAG00000005788)
Rhinopithecus	ANCESTRAL SPECIES	152	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00860000135714	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00910000148266
Black snub-nosed monkey	MODERN SPECIES	574														RNFT1 (ENSRBIG00000043477) #20	RPS6KB1 (ENSRBIG00000032123) #21	TUBD1 (ENSRBIG00000033859) #22	ENSRBIG00000033060	VMP1 (ENSRBIG00000027746) #23	ENSRBIG00000032181	PTRH2 (ENSRBIG00000033946) #24	CLTC (ENSRBIG00000042779) #25	ENSRBIG00000039327	PLGRKT (ENSRBIG00000029139)	ENSRBIG00000027812	CD274 (ENSRBIG00000026347)	PDCD1LG2 (ENSRBIG00000043289)	RIC1 (ENSRBIG00000042797)	ERMP1 (ENSRBIG00000032856)	MLANA (ENSRBIG00000032955)	KIAA2026 (ENSRBIG00000036421)	ENSRBIG00000035434
Golden snub-nosed monkey	MODERN SPECIES	1123	ENSRROG00000032453 #9	CHCT1 (ENSRROG00000045286) #10	APPBP2 (ENSRROG00000035957) #11	PPM1D (ENSRROG00000037071) #12	ENSRROG00000013444	BCAS3 (ENSRROG00000034865) #13	TBX2 (ENSRROG00000013661) #15	ENSRROG00000033366	TBX4 (ENSRROG00000029660) #16	BRIP1 (ENSRROG00000030994) #17	INTS2 (ENSRROG00000026994) #18	MED13 (ENSRROG00000031618) #19	ENSRROG00000032626	RNFT1 (ENSRROG00000042914) #20	RPS6KB1 (ENSRROG00000041023) #21	TUBD1 (ENSRROG00000045723) #22	VMP1 (ENSRROG00000045690) #23	PTRH2 (ENSRROG00000038107) #24	CLTC (ENSRROG00000037422) #25
Platyrrhini	ANCESTRAL SPECIES	1	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000165945	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.g	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000002414.ab	ENSGT00390000015123.b	ENSGT00390000018146
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	805	ENSANAG00000020996 #9	CHCT1 (ENSANAG00000027029) #10	APPBP2 (ENSANAG00000032233) #11	PPM1D (ENSANAG00000031744) #12	BCAS3 (ENSANAG00000034986) #13	ENSANAG00000038017	TBX2 (ENSANAG00000036974) #15	TBX4 (ENSANAG00000037206) #16	BRIP1 (ENSANAG00000025762) #17	INTS2 (ENSANAG00000027163) #18	MED13 (ENSANAG00000029296) #19	ENSANAG00000023787	RNFT1 (ENSANAG00000035147) #20	RPS6KB1 (ENSANAG00000026103) #21	ENSANAG00000033464 #22	ENSANAG00000035138 #22	VMP1 (ENSANAG00000022418) #23	PTRH2 (ENSANAG00000021542) #24	ENSANAG00000037583 #25	DHX40 (ENSANAG00000019888) #26	YPEL2 (ENSANAG00000030186)	GDPD1 (ENSANAG00000033202) #28	SMG8 (ENSANAG00000038421)	PRR11 (ENSANAG00000037785)	ENSANAG00000035137	TRIM37 (ENSANAG00000023307)	PPM1E (ENSANAG00000026576)	RAD51C (ENSANAG00000027012)	IGBP1C (ENSANAG00000029074)	TEX14 (ENSANAG00000030179)	ENSANAG00000032955
Mas night monkey	MODERN SPECIES	805	ENSANAG00000032912	ENSANAG00000020996 #9	CHCT1 (ENSANAG00000027029) #10	APPBP2 (ENSANAG00000032233) #11	PPM1D (ENSANAG00000031744) #12	BCAS3 (ENSANAG00000034986) #13	ENSANAG00000038017	TBX2 (ENSANAG00000036974) #15	TBX4 (ENSANAG00000037206) #16	BRIP1 (ENSANAG00000025762) #17	INTS2 (ENSANAG00000027163) #18	MED13 (ENSANAG00000029296) #19	ENSANAG00000023787	RNFT1 (ENSANAG00000035147) #20	RPS6KB1 (ENSANAG00000026103) #21	ENSANAG00000033464 #22	ENSANAG00000035138 #22	VMP1 (ENSANAG00000022418) #23	PTRH2 (ENSANAG00000021542) #24	ENSANAG00000037583 #25	DHX40 (ENSANAG00000019888) #26	YPEL2 (ENSANAG00000030186)	GDPD1 (ENSANAG00000033202) #28	SMG8 (ENSANAG00000038421)	PRR11 (ENSANAG00000037785)	ENSANAG00000035137	TRIM37 (ENSANAG00000023307)	PPM1E (ENSANAG00000026576)	RAD51C (ENSANAG00000027012)	IGBP1C (ENSANAG00000029074)	TEX14 (ENSANAG00000030179)
Cebidae	ANCESTRAL SPECIES	10	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000165945	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.g	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C.b.b.a
Marmoset	MODERN SPECIES	17	ENSCJAG00000001104 #9	CHCT1 (ENSCJAG00000001176) #10	ENSCJAG00000080142	APPBP2 (ENSCJAG00000043808) #11	PPM1D (ENSCJAG00000001208) #12	ENSCJAG00000070152	BCAS3 (ENSCJAG00000001233) #13	ENSCJAG00000085220 #15	TBX4 (ENSCJAG00000001281) #16	ENSCJAG00000077352	BRIP1 (ENSCJAG00000082233) #17	INTS2 (ENSCJAG00000001324) #18	MED13 (ENSCJAG00000001350) #19	ENSCJAG00000032128 #20	RPS6KB1 (ENSCJAG00000001416) #21	TUBD1 (ENSCJAG00000001458) #22	ENSCJAG00000078966	VMP1 (ENSCJAG00000001479) #23	PTRH2 (ENSCJAG00000001503) #24	CLTC (ENSCJAG00000001505) #25	DHX40 (ENSCJAG00000001554) #26	ENSCJAG00000070485	YPEL2 (ENSCJAG00000040676)	GDPD1 (ENSCJAG00000035998) #28	SMG8 (ENSCJAG00000001649)	PRR11 (ENSCJAG00000001640)	TRIM37 (ENSCJAG00000001664)	PPM1E (ENSCJAG00000001738)	ENSCJAG00000084146	TEX14 (ENSCJAG00000073487)	ENSCJAG00000031546
Cebidae_a	ANCESTRAL SPECIES	1	ENSGT00940000155690 #8	ENSGT00940000165945	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00390000000673.b	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.g	ENSGT00800000124303	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146
Capuchin	MODERN SPECIES	121	ENSCCAG00000013670	ENSCCAG00000020765 #9	C17orf64 (ENSCCAG00000034964) #10	APPBP2 (ENSCCAG00000034978) #11	ENSCCAG00000019337	PPM1D (ENSCCAG00000028812) #12	BCAS3 (ENSCCAG00000030499) #13	TBX2 (ENSCCAG00000036057) #15	TBX4 (ENSCCAG00000038083) #16	BRIP1 (ENSCCAG00000024685) #17	INTS2 (ENSCCAG00000035119) #18	MED13 (ENSCCAG00000020914) #19	ENSCCAG00000025532	RNFT1 (ENSCCAG00000035577) #20	RPS6KB1 (ENSCCAG00000020299) #21	ENSCCAG00000034726 #22	VMP1 (ENSCCAG00000025212) #23	PTRH2 (ENSCCAG00000018678) #24	CLTC (ENSCCAG00000036343) #25	DHX40 (ENSCCAG00000028712) #26	YPEL2 (ENSCCAG00000023862)	GDPD1 (ENSCCAG00000037006) #28	SMG8 (ENSCCAG00000035038)	PRR11 (ENSCCAG00000029505)	ENSCCAG00000030063	SKA2 (ENSCCAG00000021102)	TRIM37 (ENSCCAG00000026881)	PPM1E (ENSCCAG00000029649)	ENSCCAG00000032856	ENSCCAG00000033308	TEX14 (ENSCCAG00000025543)
Bolivian squirrel monkey	MODERN SPECIES	74	ENSSBOG00000020205 #9	ENSSBOG00000019247	ENSSBOG00000005431	CHCT1 (ENSSBOG00000034515) #10	APPBP2 (ENSSBOG00000034499) #11	PPM1D (ENSSBOG00000035360) #12	BCAS3 (ENSSBOG00000036124) #13	TBX2 (ENSSBOG00000022070) #15	TBX4 (ENSSBOG00000027122) #16	BRIP1 (ENSSBOG00000035665) #17	INTS2 (ENSSBOG00000033684) #18	MED13 (ENSSBOG00000034261) #19	ENSSBOG00000013174	RNFT1 (ENSSBOG00000021326) #20	RPS6KB1 (ENSSBOG00000021660) #21	TUBD1 (ENSSBOG00000020501) #22	VMP1 (ENSSBOG00000022209) #23	PTRH2 (ENSSBOG00000021203) #24	CLTC (ENSSBOG00000034754) #25	DHX40 (ENSSBOG00000024911) #26	YPEL2 (ENSSBOG00000027269)	GDPD1 (ENSSBOG00000026260) #28	SMG8 (ENSSBOG00000030540)	PRR11 (ENSSBOG00000026517)	SKA2 (ENSSBOG00000030263)	DPPA3 (ENSSBOG00000021361)	TRIM37 (ENSSBOG00000034215)	PPM1E (ENSSBOG00000032896)	RAD51C (ENSSBOG00000034425)	TEX14 (ENSSBOG00000031745)	ENSSBOG00000021766
Tarsier	MODERN SPECIES	6699									TBX2 (ENSTSYG00000032683) #15	TBX4 (ENSTSYG00000002965) #16	BRIP1 (ENSTSYG00000011037) #17	INTS2 (ENSTSYG00000011050) #18	MED13 (ENSTSYG00000006983) #19	RNFT1 (ENSTSYG00000002399) #20	RPS6KB1 (ENSTSYG00000002384) #21	TUBD1 (ENSTSYG00000002343) #22	VMP1 (ENSTSYG00000003108) #23	PTRH2 (ENSTSYG00000033941) #24	CLTC (ENSTSYG00000013430) #25	DHX40 (ENSTSYG00000034797) #26	PTMA (ENSTSYG00000013312)
Euarchontoglires_A	ANCESTRAL SPECIES	4	ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Glires	ANCESTRAL SPECIES	3	ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Rodentia	ANCESTRAL SPECIES	4	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000171847	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00940000167896	ENSGT00390000018146
Rodentia_B	ANCESTRAL SPECIES	1	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000171847	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00940000167896	ENSGT00390000018146
Kangaroo rat	MODERN SPECIES	338	Znhit3 (ENSDORG00000029572) #7	Car4 (ENSDORG00000007143) #8	Usp32 (ENSDORG00000016159) #9	Chct1 (ENSDORG00000013035) #10	Appbp2 (ENSDORG00000025450) #11	Ppm1d (ENSDORG00000004364) #12	Bcas3 (ENSDORG00000004366) #13	Tbx2 (ENSDORG00000024193) #15	Tbx4 (ENSDORG00000008085) #16	Brip1 (ENSDORG00000009299) #17	Ints2 (ENSDORG00000009302) #18	ENSDORG00000024899 #19	ENSDORG00000025767 #19	Rnft1 (ENSDORG00000008706) #20	ENSDORG00000028233 #21	Tubd1 (ENSDORG00000011492) #22	Vmp1 (ENSDORG00000011491) #23	Ptrh2 (ENSDORG00000027376) #24	Cltc (ENSDORG00000006522) #25	Dhx40 (ENSDORG00000006521) #26	Ypel2 (ENSDORG00000025167)	ENSDORG00000030023 #28	Smg8 (ENSDORG00000023339)	Prr11 (ENSDORG00000013612)	ENSDORG00000010768	Trim37 (ENSDORG00000003817)	Ppm1e (ENSDORG00000007303)	Rad51c (ENSDORG00000002021)	ENSDORG00000028701	ENSDORG00000028683	ENSDORG00000027744
Myomorpha	ANCESTRAL SPECIES		ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000171847	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Lesser Egyptian jerboa	MODERN SPECIES	112	Znhit3 (ENSJJAG00000021789) #7	Car4 (ENSJJAG00000024230) #8	Usp32 (ENSJJAG00000013153) #9	Chct1 (ENSJJAG00000008525) #10	Appbp2 (ENSJJAG00000018940) #11	Ppm1d (ENSJJAG00000024338) #12	Bcas3 (ENSJJAG00000018677) #13	Tbx2 (ENSJJAG00000016726) #15	Tbx4 (ENSJJAG00000015943) #16	Brip1 (ENSJJAG00000016463) #17	Ints2 (ENSJJAG00000003384) #18	Med13 (ENSJJAG00000009968) #19	Rnft1 (ENSJJAG00000019680) #20	ENSJJAG00000010455	ENSJJAG00000008914	Tubd1 (ENSJJAG00000014684) #22	Vmp1 (ENSJJAG00000011537) #23	ENSJJAG00000019588 #24	Cltc (ENSJJAG00000015375) #25	Dhx40 (ENSJJAG00000010433) #26	Ypel2 (ENSJJAG00000011970)	Gdpd1 (ENSJJAG00000011630) #28	Smg8 (ENSJJAG00000000434)	ENSJJAG00000012824	Trim37 (ENSJJAG00000011870)	Ppm1e (ENSJJAG00000015240)
Muroidea	ANCESTRAL SPECIES		ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Upper Galilee mountains blind mole rat	MODERN SPECIES	1204		Chct1 (ENSNGAG00000017528) #10	Appbp2 (ENSNGAG00000003783) #11	ENSNGAG00000011442	Ppm1d (ENSNGAG00000016070) #12	Bcas3 (ENSNGAG00000019441) #13	ENSNGAG00000001862	Tbx2 (ENSNGAG00000019937) #15	Tbx4 (ENSNGAG00000015513) #16	Brip1 (ENSNGAG00000009296) #17	Ints2 (ENSNGAG00000017259) #18	Med13 (ENSNGAG00000008305) #19	ENSNGAG00000012542	Rnft1 (ENSNGAG00000001067) #20	Rps6kb1 (ENSNGAG00000010640) #21	Tubd1 (ENSNGAG00000017771) #22	Vmp1 (ENSNGAG00000001666) #23	Ptrh2 (ENSNGAG00000011147) #24	Cltc (ENSNGAG00000001753) #25	Dhx40 (ENSNGAG00000014507) #26	ENSNGAG00000013032	Ypel2 (ENSNGAG00000018925)	Gdpd1 (ENSNGAG00000020744) #28	Smg8 (ENSNGAG00000021241)	Prr11 (ENSNGAG00000000634)	Ska2 (ENSNGAG00000016177)	Trim37 (ENSNGAG00000020537)	Ppm1e (ENSNGAG00000019128)	Rad51c (ENSNGAG00000001439)	Tex14 (ENSNGAG00000014872)	ENSNGAG00000015801
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Cricetidae	ANCESTRAL SPECIES		ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Northern American deer mouse	MODERN SPECIES	21	Myo19 (ENSPEMG00000022948)	Znhit3 (ENSPEMG00000028356) #7	Car4 (ENSPEMG00000010937) #8	Usp32 (ENSPEMG00000004467) #9	Chct1 (ENSPEMG00000003353) #10	Appbp2 (ENSPEMG00000022734) #11	Ppm1d (ENSPEMG00000023276) #12	Bcas3 (ENSPEMG00000022102) #13	Tbx2 (ENSPEMG00000002659) #15	Tbx4 (ENSPEMG00000008410) #16	Brip1 (ENSPEMG00000023111) #17	Ints2 (ENSPEMG00000000802) #18	Med13 (ENSPEMG00000022916) #19	Rnft1 (ENSPEMG00000023522) #20	ENSPEMG00000000304 #21	Tubd1 (ENSPEMG00000004702) #22	Vmp1 (ENSPEMG00000023827) #23	Ptrh2 (ENSPEMG00000024186) #24	Cltc (ENSPEMG00000007856) #25	Dhx40 (ENSPEMG00000013338) #26	Ypel2 (ENSPEMG00000030988)	ENSPEMG00000026591 #28	Smg8 (ENSPEMG00000009837)	Prr11 (ENSPEMG00000013346)	Ska2 (ENSPEMG00000025996)	Trim37 (ENSPEMG00000018223)	Ppm1e (ENSPEMG00000024026)	Rad51c (ENSPEMG00000013865)	Tex14 (ENSPEMG00000010047)	ENSPEMG00000023866	ENSPEMG00000015994
Prairie vole	MODERN SPECIES	15	Prkca (ENSMOCG00000003488)	Car4 (ENSMOCG00000013496) #8	Usp32 (ENSMOCG00000022840) #9	Chct1 (ENSMOCG00000012308) #10	Appbp2 (ENSMOCG00000001383) #11	Ppm1d (ENSMOCG00000021549) #12	ENSMOCG00000002344 #13	ENSMOCG00000017140	Tbx2 (ENSMOCG00000022969) #15	Tbx4 (ENSMOCG00000011773) #16	Brip1 (ENSMOCG00000018498) #17	Ints2 (ENSMOCG00000022017) #18	Med13 (ENSMOCG00000022977) #19	Rnft1 (ENSMOCG00000003334) #20	Rps6kb1 (ENSMOCG00000006343) #21	Tubd1 (ENSMOCG00000000998) #22	Vmp1 (ENSMOCG00000016862) #23	Ptrh2 (ENSMOCG00000018927) #24	Cltc (ENSMOCG00000021102) #25	Dhx40 (ENSMOCG00000022697) #26	Ypel2 (ENSMOCG00000013478)	ENSMOCG00000003303 #28	Smg8 (ENSMOCG00000022957)	Prr11 (ENSMOCG00000005113)	Ska2 (ENSMOCG00000022711)	Trim37 (ENSMOCG00000021228)	Ppm1e (ENSMOCG00000002093)	ENSMOCG00000018800	ENSMOCG00000020836	ENSMOCG00000022414	ENSMOCG00000001816
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Golden Hamster	MODERN SPECIES	684	Myo19 (ENSMAUG00000008695)	Znhit3 (ENSMAUG00000015879) #7	Car4 (ENSMAUG00000008867) #8	Usp32 (ENSMAUG00000021723) #9	ENSMAUG00000000696 #10	Appbp2 (ENSMAUG00000017006) #11	Ppm1d (ENSMAUG00000021070) #12	ENSMAUG00000021441	Bcas3 (ENSMAUG00000017427) #13	Tbx2 (ENSMAUG00000005401) #15	Tbx4 (ENSMAUG00000007932) #16	Brip1 (ENSMAUG00000018993) #17	Ints2 (ENSMAUG00000016751) #18	Med13 (ENSMAUG00000010160) #19	ENSMAUG00000012729 #21	Tubd1 (ENSMAUG00000021562) #22	Vmp1 (ENSMAUG00000021931) #23	Ptrh2 (ENSMAUG00000022169) #24	Cltc (ENSMAUG00000009742) #25	Dhx40 (ENSMAUG00000014047) #26	Ypel2 (ENSMAUG00000007887)	ENSMAUG00000014798 #28	Smg8 (ENSMAUG00000018661)	Prr11 (ENSMAUG00000002257)	Ska2 (ENSMAUG00000019872)	Trim37 (ENSMAUG00000021289)	Ppm1e (ENSMAUG00000021080)	Rad51c (ENSMAUG00000020458)
Chinese hamster chok1gshd	MODERN SPECIES	33	Car4 (ENSCGRG00001008651) #8	Usp32 (ENSCGRG00001020062) #9	ENSCGRG00001013461	ENSCGRG00001023587	Chct1 (ENSCGRG00001006750) #10	Appbp2 (ENSCGRG00001017780) #11	Ppm1d (ENSCGRG00001000325) #12	Bcas3 (ENSCGRG00001020361) #13	Tbx2 (ENSCGRG00001002926) #15	Tbx4 (ENSCGRG00001003392) #16	Brip1 (ENSCGRG00001014758) #17	Ints2 (ENSCGRG00001004999) #18	Med13 (ENSCGRG00001012260) #19	Rnft1 (ENSCGRG00001022766) #20	Rps6kb1 (ENSCGRG00001010187) #21	Tubd1 (ENSCGRG00001022519) #22	Vmp1 (ENSCGRG00001006496) #23	Ptrh2 (ENSCGRG00001011782) #24	Cltc (ENSCGRG00001017828) #25	Dhx40 (ENSCGRG00001000389) #26	YPEL (ENSCGRG00001017547)	Gdpd1 (ENSCGRG00001017891) #28	Smg8 (ENSCGRG00001006465)	Prr11 (ENSCGRG00001013556)	ENSCGRG00001000541	Trim37 (ENSCGRG00001011708)	Ppm1e (ENSCGRG00001016977)	RAD51C (ENSCGRG00001009215)	Tex14 (ENSCGRG00001012255)	ENSCGRG00001019994	ENSCGRG00001020635
Murinae	ANCESTRAL SPECIES	6	ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Rat	MODERN SPECIES	1	ENSRNOG00000067083	Usp32 (ENSRNOG00000027711) #9	ENSRNOG00000069734	Chct1 (ENSRNOG00000003143) #10	Appbp2 (ENSRNOG00000027654) #11	AABR07030162.1 (ENSRNOG00000031560)	Ppm1d (ENSRNOG00000003329) #12	Bcas3 (ENSRNOG00000066893) #13	Tbx2 (ENSRNOG00000003517) #15	Tbx4 (ENSRNOG00000003544) #16	Brip1 (ENSRNOG00000059997) #17	Ints2 (ENSRNOG00000003576) #18	Med13 (ENSRNOG00000003679) #19	Rnft1 (ENSRNOG00000003805) #20	Rps6kb1 (ENSRNOG00000003919) #21	Tubd1 (ENSRNOG00000053309) #22	Vmp1 (ENSRNOG00000003967) #23	Ptrh2 (ENSRNOG00000004288) #24	Cltc (ENSRNOG00000004291) #25	Dhx40 (ENSRNOG00000004549) #26	Ypel2 (ENSRNOG00000005447)	Gdpd1 (ENSRNOG00000060561) #28	Smg8 (ENSRNOG00000005769)	Prr11 (ENSRNOG00000006198)	Ska2 (ENSRNOG00000025981)	Trim37 (ENSRNOG00000006248)	Ppm1e (ENSRNOG00000024730)	Rad51c (ENSRNOG00000006661)	Tex14 (ENSRNOG00000023698)	Zfp146 (ENSRNOG00000006796)	Septin4 (ENSRNOG00000007367)
Mus	ANCESTRAL SPECIES	2	ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Mus_A	ANCESTRAL SPECIES	2	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000171255	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230.c #23	ENSGT00390000015991.i #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.bb	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Mus_B	ANCESTRAL SPECIES	2	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000171255	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230.c #23	ENSGT00390000015991.i #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.bb	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Mouse	MODERN SPECIES	2	Myo19 (ENSMUSG00000020527)	Znhit3 (ENSMUSG00000020526) #7	Car4 (ENSMUSG00000000805) #8	Usp32 (ENSMUSG00000000804) #9	Chct1 (ENSMUSG00000018479) #10	Appbp2 (ENSMUSG00000018481) #11	Ppm1d (ENSMUSG00000020525) #12	Bcas3 (ENSMUSG00000059439) #13	Tbx2 (ENSMUSG00000000093) #15	Tbx4 (ENSMUSG00000000094) #16	Brip1 (ENSMUSG00000034329) #17	Ints2 (ENSMUSG00000018068) #18	Med13 (ENSMUSG00000034297) #19	Rnft1 (ENSMUSG00000020521) #20	Rps6kb1 (ENSMUSG00000020516) #21	Tubd1 (ENSMUSG00000020513) #22	Vmp1 (ENSMUSG00000018171) #23	Ptrh2 (ENSMUSG00000072582) #24	Cltc (ENSMUSG00000047126) #25	Dhx40 (ENSMUSG00000018425) #26	Ypel2 (ENSMUSG00000018427)	Gdpd1 (ENSMUSG00000061666) #28	Smg8 (ENSMUSG00000020495)	Prr11 (ENSMUSG00000020493)	Ska2 (ENSMUSG00000020492)	Trim37 (ENSMUSG00000018548)	Ppm1e (ENSMUSG00000046442)	Rad51c (ENSMUSG00000007646)	Tex14 (ENSMUSG00000010342)	Septin4 (ENSMUSG00000020486)	Mtmr4 (ENSMUSG00000018401)
Mus_C	ANCESTRAL SPECIES	3	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000171255	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000010799.v.h	ENSGT00390000007230.c #23	ENSGT00390000015991.i #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.bb	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146
Steppe mouse	MODERN SPECIES	3305	Usp32 (ENSMSIG00000011103) #9	Chct1 (ENSMSIG00000011050) #10	ENSMSIG00000011045	Appbp2 (ENSMSIG00000010989) #11	ENSMSIG00000010975	Ppm1d (ENSMSIG00000010931) #12	Bcas3 (ENSMSIG00000010472) #13	Tbx2 (ENSMSIG00000010345) #15	Tbx4 (ENSMSIG00000010313) #16	ENSMSIG00000010306	ENSMSIG00000010296	Ints2 (ENSMSIG00000010230) #18	Med13 (ENSMSIG00000010075) #19	Rnft1 (ENSMSIG00000010045) #20	Rps6kb1 (ENSMSIG00000009982) #21	Tubd1 (ENSMSIG00000009818) #22	ENSMSIG00000009792	Vmp1 (ENSMSIG00000009755) #23	Ptrh2 (ENSMSIG00000009744) #24	Cltc (ENSMSIG00000009600) #25	Dhx40 (ENSMSIG00000009543) #26	ENSMSIG00000009523	Gdpd1 (ENSMSIG00000009474) #28	Smg8 (ENSMSIG00000009457)	ENSMSIG00000009435	ENSMSIG00000009380	Trim37 (ENSMSIG00000009188)	Ppm1e (ENSMSIG00000009115)	ENSMSIG00000009001	ENSMSIG00000008986
spretus	MODERN SPECIES	2	Znhit3 (MGP_SPRETEiJ_G0017746) #7	Car4 (MGP_SPRETEiJ_G0017747) #8	Usp32 (MGP_SPRETEiJ_G0017748) #9	Chct1 (MGP_SPRETEiJ_G0017749) #10	MGP_SPRETEiJ_G0017750 #11	Ppm1d (MGP_SPRETEiJ_G0017751) #12	Bcas3 (MGP_SPRETEiJ_G0017752) #13	Tbx2 (MGP_SPRETEiJ_G0017753) #15	MGP_SPRETEiJ_G0017754	Tbx4 (MGP_SPRETEiJ_G0017755) #16	Brip1 (MGP_SPRETEiJ_G0017756) #17	Ints2 (MGP_SPRETEiJ_G0017757) #18	Med13 (MGP_SPRETEiJ_G0017758) #19	Rnft1 (MGP_SPRETEiJ_G0017759) #20	Rps6kb1 (MGP_SPRETEiJ_G0017760) #21	Tubd1 (MGP_SPRETEiJ_G0017761) #22	Vmp1 (MGP_SPRETEiJ_G0017762) #23	MGP_SPRETEiJ_G0017763	Ptrh2 (MGP_SPRETEiJ_G0017764) #24	Cltc (MGP_SPRETEiJ_G0017765) #25	Dhx40 (MGP_SPRETEiJ_G0017766) #26	MGP_SPRETEiJ_G0017767	Gdpd1 (MGP_SPRETEiJ_G0017768) #28	Smg8 (MGP_SPRETEiJ_G0017769)	Prr11 (MGP_SPRETEiJ_G0017770)	Ska2 (MGP_SPRETEiJ_G0017771)	Trim37 (MGP_SPRETEiJ_G0017772)	Ppm1e (MGP_SPRETEiJ_G0017773)	Rad51c (MGP_SPRETEiJ_G0017774)	Tex14 (MGP_SPRETEiJ_G0017775)	Coil (MGP_SPRETEiJ_G0017776)
Ryukyu mouse	MODERN SPECIES	2	Znhit3 (MGP_CAROLIEiJ_G0016901) #7	Car4 (MGP_CAROLIEiJ_G0016902) #8	Usp32 (MGP_CAROLIEiJ_G0016903) #9	Chct1 (MGP_CAROLIEiJ_G0016904) #10	Appbp2 (MGP_CAROLIEiJ_G0016905) #11	Ppm1d (MGP_CAROLIEiJ_G0016906) #12	Bcas3 (MGP_CAROLIEiJ_G0016907) #13	Tbx2 (MGP_CAROLIEiJ_G0016908) #15	MGP_CAROLIEiJ_G0016909	Tbx4 (MGP_CAROLIEiJ_G0016910) #16	Brip1 (MGP_CAROLIEiJ_G0016911) #17	Ints2 (MGP_CAROLIEiJ_G0016912) #18	Med13 (MGP_CAROLIEiJ_G0016913) #19	Rnft1 (MGP_CAROLIEiJ_G0016914) #20	Rps6kb1 (MGP_CAROLIEiJ_G0016915) #21	Tubd1 (MGP_CAROLIEiJ_G0016916) #22	Vmp1 (MGP_CAROLIEiJ_G0016917) #23	Ptrh2 (MGP_CAROLIEiJ_G0016918) #24	Cltc (MGP_CAROLIEiJ_G0016919) #25	Dhx40 (MGP_CAROLIEiJ_G0016920) #26	MGP_CAROLIEiJ_G0016921	Gdpd1 (MGP_CAROLIEiJ_G0016922) #28	Smg8 (MGP_CAROLIEiJ_G0016923)	MGP_CAROLIEiJ_G0016924	Ska2 (MGP_CAROLIEiJ_G0016925)	Trim37 (MGP_CAROLIEiJ_G0016926)	Ppm1e (MGP_CAROLIEiJ_G0016927)	Rad51c (MGP_CAROLIEiJ_G0016928)	Tex14 (MGP_CAROLIEiJ_G0016929)	MGP_CAROLIEiJ_G0016930	MGP_CAROLIEiJ_G0016931
Shrew mouse	MODERN SPECIES	5	Znhit3 (MGP_PahariEiJ_G0018031) #7	Car4 (MGP_PahariEiJ_G0018032) #8	Usp32 (MGP_PahariEiJ_G0018033) #9	Chct1 (MGP_PahariEiJ_G0018034) #10	Appbp2 (MGP_PahariEiJ_G0018035) #11	Ppm1d (MGP_PahariEiJ_G0018036) #12	Bcas3 (MGP_PahariEiJ_G0018037) #13	Tbx2 (MGP_PahariEiJ_G0018038) #15	MGP_PahariEiJ_G0018039	Tbx4 (MGP_PahariEiJ_G0018040) #16	Brip1 (MGP_PahariEiJ_G0018041) #17	Ints2 (MGP_PahariEiJ_G0018042) #18	Med13 (MGP_PahariEiJ_G0018043) #19	Rnft1 (MGP_PahariEiJ_G0018044) #20	Rps6kb1 (MGP_PahariEiJ_G0018045) #21	MGP_PahariEiJ_G0018046 #22	Vmp1 (MGP_PahariEiJ_G0018047) #23	Ptrh2 (MGP_PahariEiJ_G0018048) #24	Cltc (MGP_PahariEiJ_G0018049) #25	Dhx40 (MGP_PahariEiJ_G0018050) #26	MGP_PahariEiJ_G0018051	Gdpd1 (MGP_PahariEiJ_G0018052) #28	Smg8 (MGP_PahariEiJ_G0018053)	Ska2 (MGP_PahariEiJ_G0018054)	Trim37 (MGP_PahariEiJ_G0018055)	Ppm1e (MGP_PahariEiJ_G0018056)	Rad51c (MGP_PahariEiJ_G0018057)	MGP_PahariEiJ_G0018058	MGP_PahariEiJ_G0018059	MGP_PahariEiJ_G0018060	Mtmr4 (MGP_PahariEiJ_G0018061)
Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b.j #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000171847	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00940000167896	ENSGT00390000018146
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b.j #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000171847	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902.a #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00940000157152.C	ENSGT00940000158976
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b.j #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000171847	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902.a #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b.j #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000171847	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902.a #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Degu	DUPLICATION
Degu	MODERN SPECIES	205	ENSODEG00000012951	CHCT1 (ENSODEG00000013458) #10	APPBP2 (ENSODEG00000013769) #11	PPM1D (ENSODEG00000013279) #12	BCAS3 (ENSODEG00000013524) #13	ENSODEG00000013828	TBX2 (ENSODEG00000015819) #15	ENSODEG00000020036	TBX4 (ENSODEG00000013955) #16	BRIP1 (ENSODEG00000013038) #17	INTS2 (ENSODEG00000013812) #18	MED13 (ENSODEG00000014484) #19	RNFT1 (ENSODEG00000014920) #20	ENSODEG00000013233 #21	ENSODEG00000013535	ENSODEG00000014625 #22	VMP1 (ENSODEG00000013156) #23	PTRH2 (ENSODEG00000020061) #24	CLTC (ENSODEG00000014321) #25	DHX40 (ENSODEG00000013635) #26	ENSODEG00000020189	YPEL2 (ENSODEG00000013726)	ENSODEG00000020102	GDPD1 (ENSODEG00000015203) #28	SMG8 (ENSODEG00000014137)	ENSODEG00000014065	ENSODEG00000013315	TRIM37 (ENSODEG00000013206)	PPM1E (ENSODEG00000013373)	ENSODEG00000016138	RAD51C (ENSODEG00000014804)
Degu	MODERN SPECIES	152				FRMD3 (ENSODEG00000005736)	IDNK (ENSODEG00000005137)	UBQLN1 (ENSODEG00000005531)	GKAP1 (ENSODEG00000006292)	KIF27 (ENSODEG00000006267)	ENSODEG00000006494	ENSODEG00000006230	HNRNPK (ENSODEG00000005637)	RMI1 (ENSODEG00000004954)	ENSODEG00000006844	SLC28A3 (ENSODEG00000004732)	NTRK2 (ENSODEG00000005490)	ENSODEG00000005328 #22	AGTPBP1 (ENSODEG00000005635)	NAA35 (ENSODEG00000005083)	ENSODEG00000005810	ENSODEG00000019211	ENSODEG00000005480	ENSODEG00000006904	ENSODEG00000006376	ENSODEG00000004592	ENSODEG00000005716	DAPK1 (ENSODEG00000005070)	ENSODEG00000005255	ATP12A (ENSODEG00000005612)	ENSODEG00000005443	CENPJ (ENSODEG00000004803)	ENSODEG00000004571
Long-tailed chinchilla	MODERN SPECIES	158	MYO19 (ENSCLAG00000011498)	ZNHIT3 (ENSCLAG00000013180) #7	CA4 (ENSCLAG00000014926) #8	ENSCLAG00000012909 #9	CHCT1 (ENSCLAG00000015267) #10	APPBP2 (ENSCLAG00000014528) #11	PPM1D (ENSCLAG00000010623) #12	BCAS3 (ENSCLAG00000014219) #13	TBX2 (ENSCLAG00000013720) #15	TBX4 (ENSCLAG00000014788) #16	BRIP1 (ENSCLAG00000015034) #17	INTS2 (ENSCLAG00000013460) #18	MED13 (ENSCLAG00000012593) #19	RNFT1 (ENSCLAG00000012620) #20	ENSCLAG00000013177 #21	TUBD1 (ENSCLAG00000014867) #22	VMP1 (ENSCLAG00000010947) #23	PTRH2 (ENSCLAG00000011379) #24	CLTC (ENSCLAG00000015029) #25	DHX40 (ENSCLAG00000012016) #26	YPEL2 (ENSCLAG00000017085)	GDPD1 (ENSCLAG00000016847) #28	ENSCLAG00000015729	SMG8 (ENSCLAG00000011870)	PRR11 (ENSCLAG00000013804)	ENSCLAG00000012541	TRIM37 (ENSCLAG00000015660)	PPM1E (ENSCLAG00000012507)	RAD51C (ENSCLAG00000012670)	TEX14 (ENSCLAG00000013626)	ENSCLAG00000012112
Guinea pig	MODERN SPECIES	32	MYO19 (ENSCPOG00000004270)	ZNHIT3 (ENSCPOG00000031447) #7	CA4 (ENSCPOG00000026479) #8	ENSCPOG00000005504 #9	CHCT1 (ENSCPOG00000005521) #10	APPBP2 (ENSCPOG00000033874) #11	PPM1D (ENSCPOG00000000343) #12	BCAS3 (ENSCPOG00000001933) #13	TBX2 (ENSCPOG00000034317) #15	TBX4 (ENSCPOG00000030380) #16	BRIP1 (ENSCPOG00000011648) #17	INTS2 (ENSCPOG00000011664) #18	MED13 (ENSCPOG00000011674) #19	RNFT1 (ENSCPOG00000014736) #20	RPS6KB1 (ENSCPOG00000014732) #21	TUBD1 (ENSCPOG00000004947) #22	VMP1 (ENSCPOG00000014728) #23	PTRH2 (ENSCPOG00000032354) #24	CLTC (ENSCPOG00000005508) #25	DHX40 (ENSCPOG00000003432) #26	YPEL2 (ENSCPOG00000038894)	GDPD1 (ENSCPOG00000033606) #28	SMG8 (ENSCPOG00000002768)	PRR11 (ENSCPOG00000013130)	SKA2 (ENSCPOG00000035646)	TRIM37 (ENSCPOG00000006039)	PPM1E (ENSCPOG00000037064)	RAD51C (ENSCPOG00000004586)	ENSCPOG00000001249	ENSCPOG00000027402	Vipr2 (ENSCPOG00000006143)
Naked mole-rat female	MODERN SPECIES	12	ENSHGLG00000050018	ENSHGLG00000045654	ENSHGLG00000008032 #12	ENSHGLG00000020451	BCAS3 (ENSHGLG00000008637) #13	ENSHGLG00000037926	ENSHGLG00000048682	ENSHGLG00000042253	ENSHGLG00000035608	BRIP1 (ENSHGLG00000009385) #17	ENSHGLG00000009947 #19	ENSHGLG00000042325 #19	ENSHGLG00000008964 #20	RPS6KB1 (ENSHGLG00000008626) #21	ENSHGLG00000039227	TUBD1 (ENSHGLG00000007977) #22	VMP1 (ENSHGLG00000007665) #23	PTRH2 (ENSHGLG00000049911) #24	CLTC (ENSHGLG00000007006) #25	ENSHGLG00000047772	ENSHGLG00000039398	DHX40 (ENSHGLG00000006600) #26	YPEL2 (ENSHGLG00000005905)	GDPD1 (ENSHGLG00000005571) #28	ENSHGLG00000005216	PRR11 (ENSHGLG00000004734)	SKA2 (ENSHGLG00000034737)	TRIM37 (ENSHGLG00000004649)	ENSHGLG00000034221	PPM1E (ENSHGLG00000010142)	RAD51C (ENSHGLG00000009926)
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b.j #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991.h #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Eurasian red squirrel	MODERN SPECIES	12	CA4 (ENSSVLG00005007650) #8	ENSSVLG00005007515 #9	CHCT1 (ENSSVLG00005007474) #10	APPBP2 (ENSSVLG00005007432) #11	PPM1D (ENSSVLG00005007399) #12	BCAS3 (ENSSVLG00005007342) #13	TBX2 (ENSSVLG00005007278) #15	TBX4 (ENSSVLG00005007207) #16	BRIP1 (ENSSVLG00005007112) #17	INTS2 (ENSSVLG00005006910) #18	MED13 (ENSSVLG00005006752) #19	ENSSVLG00005006724	ENSSVLG00005006701	ENSSVLG00005006674 #20	RPS6KB1 (ENSSVLG00005006584) #21	TUBD1 (ENSSVLG00005006454) #22	VMP1 (ENSSVLG00005006395) #23	PTRH2 (ENSSVLG00005006377) #24	CLTC (ENSSVLG00005006300) #25	DHX40 (ENSSVLG00005006247) #26	YPEL2 (ENSSVLG00005006212)	ENSSVLG00005006194	GDPD1 (ENSSVLG00005006022) #28	SMG8 (ENSSVLG00005005974)	PRR11 (ENSSVLG00005005920)	ENSSVLG00005014595	TRIM37 (ENSSVLG00005014311)	ENSSVLG00005014229	PPM1E (ENSSVLG00005014119)	RAD51C (ENSSVLG00005013902)	TEX14 (ENSSVLG00005013457)
Marmotini	ANCESTRAL SPECIES	8	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000153288.a.b.a.a	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b.j #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991.h #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.t	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00940000157152.C	ENSGT00940000158976
Alpin marmot	MODERN SPECIES	42	ENSMMMG00000019716 #9	CHCT1 (ENSMMMG00000019735) #10	APPBP2 (ENSMMMG00000019739) #11	ENSMMMG00000019748	PPM1D (ENSMMMG00000019753) #12	BCAS3 (ENSMMMG00000019792) #13	TBX2 (ENSMMMG00000019899) #15	TBX4 (ENSMMMG00000019951) #16	ENSMMMG00000019964	BRIP1 (ENSMMMG00000019971) #17	INTS2 (ENSMMMG00000019987) #18	MED13 (ENSMMMG00000020020) #19	ENSMMMG00000020038	RNFT1 (ENSMMMG00000020044) #20	RPS6KB1 (ENSMMMG00000020054) #21	TUBD1 (ENSMMMG00000020064) #22	VMP1 (ENSMMMG00000020090) #23	PTRH2 (ENSMMMG00000020103) #24	CLTC (ENSMMMG00000020110) #25	DHX40 (ENSMMMG00000020149) #26	YPEL2 (ENSMMMG00000020169)	GDPD1 (ENSMMMG00000020180) #28	SMG8 (ENSMMMG00000020189)	ENSMMMG00000020202	TRIM37 (ENSMMMG00000020208)	PPM1E (ENSMMMG00000020232)	ENSMMMG00000020258	TEX14 (ENSMMMG00000020276)	ENSMMMG00000020321	MTMR4 (ENSMMMG00000020365)	HSF5 (ENSMMMG00000020441)
Marmotini_b	ANCESTRAL SPECIES	5	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000153288.a.b.a.a	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b.j #19	ENSGT01100000263525.a.a.r.b	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991.h #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.t	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00940000167896	ENSGT00390000018146
Squirrel	MODERN SPECIES	90	ZNHIT3 (ENSSTOG00000013559) #7	CA4 (ENSSTOG00000010432) #8	ENSSTOG00000029070 #9	CHCT1 (ENSSTOG00000003182) #10	APPBP2 (ENSSTOG00000011350) #11	PPM1D (ENSSTOG00000021256) #12	BCAS3 (ENSSTOG00000011367) #13	TBX2 (ENSSTOG00000009350) #15	TBX4 (ENSSTOG00000009394) #16	BRIP1 (ENSSTOG00000011086) #17	INTS2 (ENSSTOG00000011102) #18	MED13 (ENSSTOG00000011121) #19	ENSSTOG00000004686	RNFT1 (ENSSTOG00000015753) #20	RPS6KB1 (ENSSTOG00000026687) #21	ENSSTOG00000016233 #22	VMP1 (ENSSTOG00000016230) #23	PTRH2 (ENSSTOG00000028844) #24	CLTC (ENSSTOG00000016223) #25	DHX40 (ENSSTOG00000016219) #26	YPEL2 (ENSSTOG00000001013)	GDPD1 (ENSSTOG00000007583) #28	SMG8 (ENSSTOG00000007565)	PRR11 (ENSSTOG00000012876)	ENSSTOG00000024169	TRIM37 (ENSSTOG00000012850)	PPM1E (ENSSTOG00000012840)	RAD51C (ENSSTOG00000002901)	ENSSTOG00000034487	ENSSTOG00000012811	ENSSTOG00000028582
Arctic ground squirrel	DUPLICATION
Arctic ground squirrel	MODERN SPECIES	193	CA4 (ENSUPAG00010011234) #8	ENSUPAG00010011211 #9	CHCT1 (ENSUPAG00010011193) #10	APPBP2 (ENSUPAG00010011180) #11	ENSUPAG00010011175	PPM1D (ENSUPAG00010011169) #12	BCAS3 (ENSUPAG00010011040) #13	TBX2 (ENSUPAG00010011028) #15	TBX4 (ENSUPAG00010011016) #16	BRIP1 (ENSUPAG00010010903) #17	INTS2 (ENSUPAG00010010815) #18	MED13 (ENSUPAG00010004887) #19	ENSUPAG00010004863	RNFT1 (ENSUPAG00010004855) #20	RPS6KB1 (ENSUPAG00010004838) #21	ENSUPAG00010004800 #22	VMP1 (ENSUPAG00010004785) #23	PTRH2 (ENSUPAG00010004774) #24	CLTC (ENSUPAG00010004718) #25	DHX40 (ENSUPAG00010004699) #26	YPEL2 (ENSUPAG00010004694)
Arctic ground squirrel	MODERN SPECIES	17	GGPS1 (ENSUPAG00010021295)	ARID4B (ENSUPAG00010021312)	RBM34 (ENSUPAG00010021384)	ENSUPAG00010021396	IRF2BP2 (ENSUPAG00010021413)	TARBP1 (ENSUPAG00010021424)	ENSUPAG00010021434	SLC35F3 (ENSUPAG00010021437)	KCNK1 (ENSUPAG00010021440)	MAP3K21 (ENSUPAG00010021445)	PCNX2 (ENSUPAG00010021456)	NTPCR (ENSUPAG00010021487)	SIPA1L2 (ENSUPAG00010021526)	DISC1 (ENSUPAG00010021561)	TSNAX (ENSUPAG00010021601)	ENSUPAG00010021608 #22	EGLN1 (ENSUPAG00010021616)	SPRTN (ENSUPAG00010021620)	EXOC8 (ENSUPAG00010021624)	GNPAT (ENSUPAG00010021626)	C1orf131 (ENSUPAG00010021636)	TRIM67 (ENSUPAG00010021637)	FAM89A (ENSUPAG00010021649)	ARV1 (ENSUPAG00010021650)	TTC13 (ENSUPAG00010021659)	C1orf198 (ENSUPAG00010021688)	CAPN9 (ENSUPAG00010021695)	AGT (ENSUPAG00010021699)	COG2 (ENSUPAG00010000010)	PGBD5 (ENSUPAG00010000058)	GALNT2 (ENSUPAG00010000112)
Lagomorpha	ANCESTRAL SPECIES		ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Rabbit	MODERN SPECIES	10	MYO19 (ENSOCUG00000000921)	ENSOCUG00000000920 #7	ENSOCUG00000009399 #8	ENSOCUG00000009402 #9	CHCT1 (ENSOCUG00000009414) #10	APPBP2 (ENSOCUG00000009419) #11	ENSOCUG00000029614 #12	BCAS3 (ENSOCUG00000010794) #13	TBX2 (ENSOCUG00000023498) #15	TBX4 (ENSOCUG00000010834) #16	BRIP1 (ENSOCUG00000006683) #17	INTS2 (ENSOCUG00000006693) #18	MED13 (ENSOCUG00000006709) #19	ENSOCUG00000021230 #20	RPS6KB1 (ENSOCUG00000004600) #21	TUBD1 (ENSOCUG00000013772) #22	VMP1 (ENSOCUG00000004210) #23	PTRH2 (ENSOCUG00000023345) #24	CLTC (ENSOCUG00000016413) #25	DHX40 (ENSOCUG00000038496) #26	ENSOCUG00000031327	ENSOCUG00000035846	YPEL2 (ENSOCUG00000020978)	GDPD1 (ENSOCUG00000013113) #28	SMG8 (ENSOCUG00000002350)	PRR11 (ENSOCUG00000002337)	ENSOCUG00000002334	TRIM37 (ENSOCUG00000002326)	PPM1E (ENSOCUG00000026526)	ENSOCUG00000002269	ENSOCUG00000025769
Pika	MODERN SPECIES	134															RPS6KB1 (ENSOPRG00000003298) #21	TUBD1 (ENSOPRG00000003277) #22	VMP1 (ENSOPRG00000003250) #23	PTRH2 (ENSOPRG00000019186) #24	CLTC (ENSOPRG00000003192) #25	ENSOPRG00000003165 #26
Tree shrew	MODERN SPECIES	2301														RNFT1 (ENSTBEG00000007307) #20	RPS6KB1 (ENSTBEG00000006556) #21	TUBD1 (ENSTBEG00000006018) #22	VMP1 (ENSTBEG00000004922) #23
Laurasiatheria	ANCESTRAL SPECIES	4	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00940000170057	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00950000185259	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146
Laurasiatheria_a	ANCESTRAL SPECIES	4	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00940000170057	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000185321	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00950000185259	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146
Artiodactyla	ANCESTRAL SPECIES	4	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00940000170057	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000185321	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Suina	ANCESTRAL SPECIES		ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000185321	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00940000157152.C	ENSGT00940000158976
Pig	MODERN SPECIES	3	ZNHIT3 (ENSSSCG00000056293) #7	CA4 (ENSSSCG00000023186) #8	ENSSSCG00000039473 #9	ENSSSCG00000017679 #10	APPBP2 (ENSSSCG00000017678) #11	PPM1D (ENSSSCG00000026665) #12	BCAS3 (ENSSSCG00000017676) #13	TBX2 (ENSSSCG00000027060) #15	TBX4 (ENSSSCG00000022980) #16	ENSSSCG00000051471	BRIP1 (ENSSSCG00000021384) #17	INTS2 (ENSSSCG00000017673) #18	MED13 (ENSSSCG00000017672) #19	RNFT1 (ENSSSCG00000017671) #20	RPS6KB1 (ENSSSCG00000017670) #21	TUBD1 (ENSSSCG00000017669) #22	VMP1 (ENSSSCG00000017668) #23	PTRH2 (ENSSSCG00000017667) #24	CLTC (ENSSSCG00000022659) #25	DHX40 (ENSSSCG00000017665) #26	YPEL2 (ENSSSCG00000035400)	ENSSSCG00000030262 #28	ENSSSCG00000024411	PRR11 (ENSSSCG00000024145)	SKA2 (ENSSSCG00000034217)	TRIM37 (ENSSSCG00000023727)	ENSSSCG00000049622	PPM1E (ENSSSCG00000038932)	RAD51C (ENSSSCG00000023955)	TEX14 (ENSSSCG00000017645)	ENSSSCG00000017643
Chacoan peccary	MODERN SPECIES	145											ENSCWAG00000013717 #17	INTS2 (ENSCWAG00000014101) #18	MED13 (ENSCWAG00000014509) #19	RNFT1 (ENSCWAG00000014804) #20	RPS6KB1 (ENSCWAG00000014858) #21	TUBD1 (ENSCWAG00000015047) #22	VMP1 (ENSCWAG00000015277) #23	CLTC (ENSCWAG00000015359) #25	PTRH2 (ENSCWAG00000015577) #24	DHX40 (ENSCWAG00000015608) #26	YPEL2 (ENSCWAG00000015762)	GDPD1 (ENSCWAG00000015801) #28	SMG8 (ENSCWAG00000015858)	PRR11 (ENSCWAG00000015881)	SKA2 (ENSCWAG00000015901)	TRIM37 (ENSCWAG00000016012)	PPM1E (ENSCWAG00000016651)	RAD51C (ENSCWAG00000016729)	TEX14 (ENSCWAG00000016870)	ENSCWAG00000017578	MTMR4 (ENSCWAG00000017980)
Artiodactyla_a	ANCESTRAL SPECIES	3	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00940000170057	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000185321	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Artiodactyla_b	ANCESTRAL SPECIES	3	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00940000170057	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000185321	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Cetacea	ANCESTRAL SPECIES	5	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00940000170057	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.ob	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Odontoceti	ANCESTRAL SPECIES	17	ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.ob	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Odontoceti_a	ANCESTRAL SPECIES	31	ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.ob	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Odontoceti_b	ANCESTRAL SPECIES	24	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000185321	ENSGT00940000165214.a	ENSGT01000000214902	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.ob	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Monodontidae	ANCESTRAL SPECIES	29	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00940000165214.a	ENSGT01000000214902	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.ob	ENSGT00990000210837	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00940000157152.C
Narwhal	MODERN SPECIES	316	ENSMMNG00015016218 #9	CHCT1 (ENSMMNG00015016098) #10	APPBP2 (ENSMMNG00015016040) #11	PPM1D (ENSMMNG00015015991) #12	BCAS3 (ENSMMNG00015019434) #13	TBX2 (ENSMMNG00015019383) #15	TBX4 (ENSMMNG00015019355) #16	ENSMMNG00015019338	ENSMMNG00015019322	BRIP1 (ENSMMNG00015019192) #17	INTS2 (ENSMMNG00015019056) #18	ENSMMNG00015019026	MED13 (ENSMMNG00015018970) #19	RNFT1 (ENSMMNG00015018874) #20	RPS6KB1 (ENSMMNG00015018790) #21	TUBD1 (ENSMMNG00015018668) #22	VMP1 (ENSMMNG00015018616) #23	PTRH2 (ENSMMNG00015018597) #24	CLTC (ENSMMNG00015018505) #25	DHX40 (ENSMMNG00015018447) #26	YPEL2 (ENSMMNG00015018412)	GDPD1 (ENSMMNG00015018378) #28	SMG8 (ENSMMNG00015018358)	PRR11 (ENSMMNG00015018321)	SKA2 (ENSMMNG00015018184)	ENSMMNG00015018121	TRIM37 (ENSMMNG00015017826)	PPM1E (ENSMMNG00015017711)	RAD51C (ENSMMNG00015017634)	TEX14 (ENSMMNG00015017498)	ENSMMNG00015017462
Beluga whale	MODERN SPECIES	40	CA4 (ENSDLEG00000007765) #8	USP32 (ENSDLEG00000007736) #9	CHCT1 (ENSDLEG00000007728) #10	APPBP2 (ENSDLEG00000007720) #11	PPM1D (ENSDLEG00000007716) #12	BCAS3 (ENSDLEG00000007652) #13	TBX2 (ENSDLEG00000007629) #15	TBX4 (ENSDLEG00000007604) #16	ENSDLEG00000007600	ENSDLEG00000007593	BRIP1 (ENSDLEG00000007581) #17	INTS2 (ENSDLEG00000007523) #18	MED13 (ENSDLEG00000007448) #19	RNFT1 (ENSDLEG00000007428) #20	RPS6KB1 (ENSDLEG00000007408) #21	TUBD1 (ENSDLEG00000007396) #22	VMP1 (ENSDLEG00000007378) #23	PTRH2 (ENSDLEG00000007373) #24	CLTC (ENSDLEG00000007313) #25	DHX40 (ENSDLEG00000007183) #26	YPEL2 (ENSDLEG00000007172)	GDPD1 (ENSDLEG00000007153) #28	SMG8 (ENSDLEG00000007137)	PRR11 (ENSDLEG00000007124)	SKA2 (ENSDLEG00000007049)	ENSDLEG00000007041	TRIM37 (ENSDLEG00000007026)	ENSDLEG00000007015	PPM1E (ENSDLEG00000006996)	RAD51C (ENSDLEG00000006988)	TEX14 (ENSDLEG00000006938)
Vaquita	MODERN SPECIES	12	ENSPSNG00000016659 #9	CHCT1 (ENSPSNG00000016555) #10	APPBP2 (ENSPSNG00000016424) #11	PPM1D (ENSPSNG00000016346) #12	BCAS3 (ENSPSNG00000016097) #13	TBX2 (ENSPSNG00000015990) #15	TBX4 (ENSPSNG00000015862) #16	ENSPSNG00000015805	ENSPSNG00000015765	ENSPSNG00000015706	BRIP1 (ENSPSNG00000015661) #17	INTS2 (ENSPSNG00000015302) #18	MED13 (ENSPSNG00000015192) #19	RNFT1 (ENSPSNG00000015132) #20	RPS6KB1 (ENSPSNG00000014972) #21	TUBD1 (ENSPSNG00000014682) #22	VMP1 (ENSPSNG00000014510) #23	PTRH2 (ENSPSNG00000014462) #24	CLTC (ENSPSNG00000014273) #25	DHX40 (ENSPSNG00000014096) #26	YPEL2 (ENSPSNG00000014008)	GDPD1 (ENSPSNG00000013487) #28	SMG8 (ENSPSNG00000013328)	PRR11 (ENSPSNG00000013196)	ENSPSNG00000013102	TRIM37 (ENSPSNG00000019523)	ENSPSNG00000019458	ENSPSNG00000019408	PPM1E (ENSPSNG00000019275)	RAD51C (ENSPSNG00000019147)	TEX14 (ENSPSNG00000018249)
Dolphin	MODERN SPECIES	2219														RNFT1 (ENSTTRG00000017222) #20	RPS6KB1 (ENSTTRG00000017216) #21	TUBD1 (ENSTTRG00000017215) #22	VMP1 (ENSTTRG00000017213) #23	PTRH2 (ENSTTRG00000017211) #24	CLTC (ENSTTRG00000017208) #25	DHX40 (ENSTTRG00000017203) #26	YPEL2 (ENSTTRG00000017201)	GDPD1 (ENSTTRG00000017199) #28	SMG8 (ENSTTRG00000017198)	PRR11 (ENSTTRG00000017197)	SKA2 (ENSTTRG00000017196)	TRIM37 (ENSTTRG00000017192)	PPM1E (ENSTTRG00000017189)	RAD51C (ENSTTRG00000017186)	TEX14 (ENSTTRG00000017185)	ENSTTRG00000017184
Sperm whale	MODERN SPECIES	5	ENSPCTG00005019258	APPBP2 (ENSPCTG00005019348) #11	USP32 (ENSPCTG00005019411) #9	CA4 (ENSPCTG00005019708) #8	ENSPCTG00005019742 #12	BCAS3 (ENSPCTG00005019802) #13	TBX2 (ENSPCTG00005019984) #15	TBX4 (ENSPCTG00005020037) #16	BRIP1 (ENSPCTG00005020116) #17	ENSPCTG00005020250	ENSPCTG00005020270	INTS2 (ENSPCTG00005020312) #18	MED13 (ENSPCTG00005020799) #19	RNFT1 (ENSPCTG00005020911) #20	RPS6KB1 (ENSPCTG00005020936) #21	TUBD1 (ENSPCTG00005021018) #22	VMP1 (ENSPCTG00005021127) #23	PTRH2 (ENSPCTG00005021143) #24	CLTC (ENSPCTG00005021175) #25	DHX40 (ENSPCTG00005021249) #26	YPEL2 (ENSPCTG00005021296)	GDPD1 (ENSPCTG00005021327)	PRR11 (ENSPCTG00005021423)	ENSPCTG00005021482	TRIM37 (ENSPCTG00005021527)	ENSPCTG00005008828	PPM1E (ENSPCTG00005008846)	ENSPCTG00005008891	ENSPCTG00005008925	RAD51C (ENSPCTG00005008981)	ENSPCTG00005009064
Blue whale	MODERN SPECIES	12	ENSBMSG00010020532 #9	CHCT1 (ENSBMSG00010020482) #10	APPBP2 (ENSBMSG00010020445) #11	PPM1D (ENSBMSG00010020421) #12	ENSBMSG00010020390	BCAS3 (ENSBMSG00010020266) #13	TBX2 (ENSBMSG00010020212) #15	TBX4 (ENSBMSG00010020184) #16	ENSBMSG00010020161	BRIP1 (ENSBMSG00010020127) #17	INTS2 (ENSBMSG00010020093) #18	MED13 (ENSBMSG00010020052) #19	ENSBMSG00010020036	RNFT1 (ENSBMSG00010020021) #20	RPS6KB1 (ENSBMSG00010019972) #21	TUBD1 (ENSBMSG00010019856) #22	VMP1 (ENSBMSG00010019801) #23	PTRH2 (ENSBMSG00010019789) #24	CLTC (ENSBMSG00010019649) #25	DHX40 (ENSBMSG00010019469) #26	YPEL2 (ENSBMSG00010019429)	GDPD1 (ENSBMSG00010019404) #28	SMG8 (ENSBMSG00010019376)	PRR11 (ENSBMSG00010019334)	ENSBMSG00010019266	ENSBMSG00010019190	TRIM37 (ENSBMSG00010019041)	ENSBMSG00010018986	ENSBMSG00010018958	PPM1E (ENSBMSG00010018904)	RAD51C (ENSBMSG00010018828)
Pecora	ANCESTRAL SPECIES	1	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000185321	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00940000157152.C	ENSGT00940000158976
Yarkand deer	MODERN SPECIES	28	CA4 (ENSCHYG00000001762) #8	ENSCHYG00000001735 #20	ENSCHYG00000001585 #9	CHCT1 (ENSCHYG00000001527) #10	ENSCHYG00000001515	APPBP2 (ENSCHYG00000001468) #11	PPM1D (ENSCHYG00000001443) #12	ENSCHYG00000001424	BCAS3 (ENSCHYG00000001231) #13	TBX4 (ENSCHYG00000001113) #16	BRIP1 (ENSCHYG00000001042) #17	INTS2 (ENSCHYG00000000949) #18	MED13 (ENSCHYG00000000865) #19	RNFT1 (ENSCHYG00000000823) #20	RPS6KB1 (ENSCHYG00000000572) #21	TUBD1 (ENSCHYG00000000462) #22	VMP1 (ENSCHYG00000000409) #23	PTRH2 (ENSCHYG00000000401) #24	ENSCHYG00000000393	CLTC (ENSCHYG00000000331) #25	ENSCHYG00000000301	DHX40 (ENSCHYG00000000218) #26	ENSCHYG00000000189	ENSCHYG00000000162	ENSCHYG00000000124	SMG8 (ENSCHYG00000000079)	SKA2 (ENSCHYG00000021682)	ENSCHYG00000021645	TRIM37 (ENSCHYG00000020755)	ENSCHYG00000020667	PPM1E (ENSCHYG00000020517)
Percora_a	ANCESTRAL SPECIES	2	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000185321	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.pb.a	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00940000157152.C	ENSGT00940000158976
Bovidae	ANCESTRAL SPECIES	2	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000185321	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.pb.a	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00940000157152.C	ENSGT00940000158976
Caprinae	ANCESTRAL SPECIES	1	ENSGT00390000010822.i #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00940000167880.c.a	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740.k #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.pb.a	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00940000157152.C	ENSGT00940000158976
Rambouillet Sheep	MODERN SPECIES	2	ENSOARG00020024981	CHCT1 (ENSOARG00020009988) #10	APPBP2 (ENSOARG00020010094) #11	ENSOARG00020010189	PPM1D (ENSOARG00020010254) #12	BCAS3 (ENSOARG00020010530) #13	TBX2 (ENSOARG00020011127) #15	TBX4 (ENSOARG00020011171) #16	ENSOARG00020011344	BRIP1 (ENSOARG00020011382) #17	ENSOARG00020011548	INTS2 (ENSOARG00020011586) #18	MED13 (ENSOARG00020011969) #19	RNFT1 (ENSOARG00020012186) #20	RPS6KB1 (ENSOARG00020012243) #21	TUBD1 (ENSOARG00020012492) #22	ENSOARG00020012920	VMP1 (ENSOARG00020012971) #23	PTRH2 (ENSOARG00020013039) #24	CLTC (ENSOARG00020013150) #25	DHX40 (ENSOARG00020014148) #26	YPEL2 (ENSOARG00020014646)	GDPD1 (ENSOARG00020014710) #28	SMG8 (ENSOARG00020014780)	PRR11 (ENSOARG00020014865)	SKA2 (ENSOARG00020014952)	TRIM37 (ENSOARG00020015161)	PPM1E (ENSOARG00020016007)	RAD51C (ENSOARG00020016070)	ENSOARG00020016303	TEX14 (ENSOARG00020016390)
Goat	MODERN SPECIES	10	CA4 (ENSCHIG00000026507) #8	ENSCHIG00000019250 #9	CHCT1 (ENSCHIG00000012925) #10	APPBP2 (ENSCHIG00000027119) #11	ENSCHIG00000017975	PPM1D (ENSCHIG00000023763) #12	BCAS3 (ENSCHIG00000015855) #13	TBX2 (ENSCHIG00000014418) #15	TBX4 (ENSCHIG00000020604) #16	ENSCHIG00000023949	BRIP1 (ENSCHIG00000015958) #17	INTS2 (ENSCHIG00000025276) #18	MED13 (ENSCHIG00000022580) #19	ENSCHIG00000019101 #20	RPS6KB1 (ENSCHIG00000005906) #21	TUBD1 (ENSCHIG00000017656) #22	VMP1 (ENSCHIG00000026133) #23	PTRH2 (ENSCHIG00000010059) #24	CLTC (ENSCHIG00000025765) #25	DHX40 (ENSCHIG00000016173) #26	YPEL2 (ENSCHIG00000010323)	SMG8 (ENSCHIG00000025569)	PRR11 (ENSCHIG00000025146)	ENSCHIG00000024984	TRIM37 (ENSCHIG00000013990)	PPM1E (ENSCHIG00000026770)	RAD51C (ENSCHIG00000015197)	ENSCHIG00000005337	TEX14 (ENSCHIG00000026179)	ENSCHIG00000024623	MTMR4 (ENSCHIG00000022534)
Bovinae	ANCESTRAL SPECIES		ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000185321	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.pb.a.b	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00940000159076.f	ENSGT00390000007029.j.p	ENSGT00390000015123.b
Bos	ANCESTRAL SPECIES	1	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000185321	ENSGT00950000182970.A.a.b #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.pb.a.b	ENSGT00410000025800.b	ENSGT00940000157884	ENSGT00940000159076.f	ENSGT00940000156805	ENSGT00390000007029.j.p	ENSGT00390000015123.b
Bos_a	ANCESTRAL SPECIES		ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000185321	ENSGT00950000182970.A.a.b #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.pb.a.b	ENSGT00410000025800.b	ENSGT00940000157884	ENSGT00940000159076.f	ENSGT00940000156805	ENSGT00390000007029.j.p	ENSGT00390000015123.b
Wild yak	MODERN SPECIES	482	CA4 (ENSBMUG00000005918) #8	ENSBMUG00000005884 #9	CHCT1 (ENSBMUG00000005851) #10	APPBP2 (ENSBMUG00000005818) #11	ENSBMUG00000005734	ENSBMUG00000005716 #12	BCAS3 (ENSBMUG00000005625) #13	TBX2 (ENSBMUG00000005516) #15	TBX4 (ENSBMUG00000005499) #16	ENSBMUG00000005455	BRIP1 (ENSBMUG00000005448) #17	INTS2 (ENSBMUG00000005370) #18	MED13 (ENSBMUG00000005293) #19	RNFT1 (ENSBMUG00000005201) #20	RPS6KB1 (ENSBMUG00000005153) #21	TUBD1 (ENSBMUG00000005013) #22	VMP1 (ENSBMUG00000004857) #23	PTRH2 (ENSBMUG00000004849) #24	CLTC (ENSBMUG00000004781) #25	DHX40 (ENSBMUG00000004576) #26	SUCO (ENSBMUG00000004508)	FASLG (ENSBMUG00000004449)	ENSBMUG00000004445
Domestic yak	MODERN SPECIES	10	CA4 (ENSBGRG00000017567) #8	ENSBGRG00000017697 #9	CHCT1 (ENSBGRG00000018355) #10	APPBP2 (ENSBGRG00000018430) #11	PPM1D (ENSBGRG00000018484) #12	ENSBGRG00000018612	BCAS3 (ENSBGRG00000018696) #13	TBX2 (ENSBGRG00000018977) #15	TBX4 (ENSBGRG00000019126) #16	ENSBGRG00000019408	BRIP1 (ENSBGRG00000019431) #17	INTS2 (ENSBGRG00000019530) #18	MED13 (ENSBGRG00000019885) #19	RNFT1 (ENSBGRG00000020257) #20	RPS6KB1 (ENSBGRG00000020335) #21	TUBD1 (ENSBGRG00000020980) #22	VMP1 (ENSBGRG00000021132) #23	PTRH2 (ENSBGRG00000021253) #24	CLTC (ENSBGRG00000021305) #25	DHX40 (ENSBGRG00000022072) #26	ENSBGRG00000022529	YPEL2 (ENSBGRG00000022545)	GDPD1 (ENSBGRG00000022582) #28	ENSBGRG00000022663	SMG8 (ENSBGRG00000022674)	PRR11 (ENSBGRG00000022721)	ENSBGRG00000022750	TRIM37 (ENSBGRG00000023019)	PPM1E (ENSBGRG00000024213)	ENSBGRG00000024298	RAD51C (ENSBGRG00000024320)
Bos_b	ANCESTRAL SPECIES	38	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00940000165546	ENSGT00940000153446.a.a.e.a.a.a	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a.b #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000154568.v	ENSGT00940000159010	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.pb.a.b	ENSGT00410000025800.b	ENSGT00940000157884	ENSGT00940000159076.f	ENSGT00940000156805	ENSGT00390000007029.j.p	ENSGT00390000015123.b
Cow	MODERN SPECIES	10	USP32 (ENSBTAG00000020089) #9	ENSBTAG00000034433	CHCT1 (ENSBTAG00000018391) #10	APPBP2 (ENSBTAG00000004489)	ENSBTAG00000046974	PPM1D (ENSBTAG00000009427) #12	BCAS3 (ENSBTAG00000002663) #13	ENSBTAG00000034506	TBX2 (ENSBTAG00000014278) #15	TBX4 (ENSBTAG00000009968) #16	BRIP1 (ENSBTAG00000012068) #17	INTS2 (ENSBTAG00000012070) #18	MED13 (ENSBTAG00000011721) #19	RNFT1 (ENSBTAG00000009747) #20	RPS6KB1 (ENSBTAG00000016851) #21	TUBD1 (ENSBTAG00000001290) #22	VMP1 (ENSBTAG00000011623) #23	PTRH2 (ENSBTAG00000016710) #24	CLTC (ENSBTAG00000016708) #25	DHX40 (ENSBTAG00000017868) #26	ENSBTAG00000020774	YPEL2 (ENSBTAG00000019806)	SMG8 (ENSBTAG00000003365)	PRR11 (ENSBTAG00000021681)	SKA2 (ENSBTAG00000021680)	TRIM37 (ENSBTAG00000021677)	PPM1E (ENSBTAG00000010788)	ENSBTAG00000046283	RAD51C (ENSBTAG00000015036)	MGC137055 (ENSBTAG00000003280)	TEX14 (ENSBTAG00000010167)
Hybrid Bos Indicus	MODERN SPECIES	10	ENSBIXG00005004086 #9	CHCT1 (ENSBIXG00005023889) #10	ENSBIXG00005023939	ENSBIXG00005023969	PPM1D (ENSBIXG00005024013) #12	BCAS3 (ENSBIXG00005024252) #13	TBX2 (ENSBIXG00005024325) #15	TBX4 (ENSBIXG00005024452) #16	BRIP1 (ENSBIXG00005024491) #17	INTS2 (ENSBIXG00005024551) #18	ENSBIXG00005024558	ENSBIXG00005007392	MED13 (ENSBIXG00005004217) #19	RNFT1 (ENSBIXG00005024715) #20	RPS6KB1 (ENSBIXG00005024788) #21	TUBD1 (ENSBIXG00005024920) #22	ENSBIXG00005024950	VMP1 (ENSBIXG00005024970) #23	PTRH2 (ENSBIXG00005024998) #24	CLTC (ENSBIXG00005005771) #25	DHX40 (ENSBIXG00005025214) #26	ENSBIXG00005025240	ENSBIXG00005025247	ENSBIXG00005004293	YPEL2 (ENSBIXG00005025296)	SMG8 (ENSBIXG00005025335)	PRR11 (ENSBIXG00005004314)	ENSBIXG00005025430	ENSBIXG00005025438	ENSBIXG00005025451	TRIM37 (ENSBIXG00005006690)
American bison	MODERN SPECIES	3331	ZNHIT3 (ENSBBBG00000003083) #7	CA4 (ENSBBBG00000013995) #8	ENSBBBG00000013979 #9	CHCT1 (ENSBBBG00000013924) #10	APPBP2 (ENSBBBG00000002898) #11	PPM1D (ENSBBBG00000003012) #12	BCAS3 (ENSBBBG00000002972) #13	TBX2 (ENSBBBG00000013469) #15	TBX4 (ENSBBBG00000013452) #16	BRIP1 (ENSBBBG00000002744) #17	ENSBBBG00000001577	INTS2 (ENSBBBG00000013349) #18	MED13 (ENSBBBG00000013181) #19	RNFT1 (ENSBBBG00000002648) #20	RPS6KB1 (ENSBBBG00000002639) #21	TUBD1 (ENSBBBG00000013008) #22	VMP1 (ENSBBBG00000012888) #23	PTRH2 (ENSBBBG00000002539) #24	CLTC (ENSBBBG00000001743) #25	DHX40 (ENSBBBG00000002446) #26	YPEL2 (ENSBBBG00000002421)	GDPD1 (ENSBBBG00000012583) #28	SMG8 (ENSBBBG00000012487)	PRR11 (ENSBBBG00000012478)	ENSBBBG00000002388	TRIM37 (ENSBBBG00000012420)	PPM1E (ENSBBBG00000012325)	RAD51C (ENSBBBG00000001925)	ENSBBBG00000012293	ENSBBBG00000001934	TEX14 (ENSBBBG00000012275)
Siberian musk deer	MODERN SPECIES	1135	CHCT1 (ENSMMSG00000008435) #10	APPBP2 (ENSMMSG00000008396) #11	ENSMMSG00000008344	PPM1D (ENSMMSG00000008295) #12	BCAS3 (ENSMMSG00000008066) #13	TBX2 (ENSMMSG00000007917) #15	TBX4 (ENSMMSG00000018587) #16	ENSMMSG00000018558	BRIP1 (ENSMMSG00000018426) #17	INTS2 (ENSMMSG00000018213) #18	MED13 (ENSMMSG00000018082) #19	ENSMMSG00000018037	ENSMMSG00000017945	RNFT1 (ENSMMSG00000017906) #20	RPS6KB1 (ENSMMSG00000017714) #21	TUBD1 (ENSMMSG00000017458) #22	VMP1 (ENSMMSG00000017374) #23	PTRH2 (ENSMMSG00000017362) #24	ENSMMSG00000017353	ENSMMSG00000017333	CLTC (ENSMMSG00000017156) #25	DHX40 (ENSMMSG00000017044) #26	YPEL2 (ENSMMSG00000017002)	GDPD1 (ENSMMSG00000016972) #28	SMG8 (ENSMMSG00000016941)	PRR11 (ENSMMSG00000016926)	ENSMMSG00000016834	TRIM37 (ENSMMSG00000016226)	ENSMMSG00000016149	ENSMMSG00000016120	PPM1E (ENSMMSG00000016076)
Camelidae	ANCESTRAL SPECIES	66	ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010.o	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Alpaca	MODERN SPECIES	3484														ENSVPAG00000009372 #20	RPS6KB1 (ENSVPAG00000009370) #21	TUBD1 (ENSVPAG00000009368) #22	VMP1 (ENSVPAG00000009366) #23	PTRH2 (ENSVPAG00000009365) #24	CLTC (ENSVPAG00000009361) #25	DHX40 (ENSVPAG00000009355) #26
Arabian camel	MODERN SPECIES	7	ZNHIT3 (ENSCDRG00005006720) #7	CA4 (ENSCDRG00005006611) #8	ENSCDRG00005006373 #9	CHCT1 (ENSCDRG00005006298) #10	APPBP2 (ENSCDRG00005006215) #11	ENSCDRG00005006172	PPM1D (ENSCDRG00005006091) #12	BCAS3 (ENSCDRG00005005852) #13	TBX2 (ENSCDRG00005005778) #15	TBX4 (ENSCDRG00005005700) #16	BRIP1 (ENSCDRG00005005651) #17	INTS2 (ENSCDRG00005005529) #18	MED13 (ENSCDRG00005005380) #19	RNFT1 (ENSCDRG00005005338) #20	RPS6KB1 (ENSCDRG00005005247) #21	TUBD1 (ENSCDRG00005005087) #22	VMP1 (ENSCDRG00005005028) #23	PTRH2 (ENSCDRG00005005012) #24	CLTC (ENSCDRG00005004426) #25	DHX40 (ENSCDRG00005004271) #26	ENSCDRG00005004236	GDPD1 (ENSCDRG00005004190) #28	SMG8 (ENSCDRG00005004162)	PRR11 (ENSCDRG00005004138)	SKA2 (ENSCDRG00005004050)	TRIM37 (ENSCDRG00005003694)	PPM1E (ENSCDRG00005003643)	RAD51C (ENSCDRG00005003518)	TEX14 (ENSCDRG00005022201)	ENSCDRG00005022182	MTMR4 (ENSCDRG00005022172)
Laurasiatheria_b	ANCESTRAL SPECIES	4	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000185321	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00950000185259	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146
Carnivora	ANCESTRAL SPECIES	9	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000185321	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.fb.a	ENSGT00410000025800	ENSGT00950000185259	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146
Caniformia	ANCESTRAL SPECIES	6	ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.fb.a	ENSGT00410000025800	ENSGT00950000185259	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146
Caniformia_b	ANCESTRAL SPECIES	21	ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.fb.a	ENSGT00410000025800	ENSGT00950000185259	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00940000157152.C
Mustelinae	ANCESTRAL SPECIES	2	ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00690000103854	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.fb.a	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00940000157152.C
American mink	MODERN SPECIES	37	CHCT1 (ENSNVIG00000000985) #10	APBP2 (ENSNVIG00000001010) #11	ENSNVIG00000001066	PPM1D (ENSNVIG00000001090) #12	BCAS3 (ENSNVIG00000001168) #13	TBX2 (ENSNVIG00000001656) #15	TBX4 (ENSNVIG00000001674) #16	ENSNVIG00000001733	BRIP1 (ENSNVIG00000001747) #17	INTS2 (ENSNVIG00000001784) #18	MED13 (ENSNVIG00000001880) #19	RNFT1 (ENSNVIG00000001927) #20	ENSNVIG00000001943 #21	ENSNVIG00000001957	ENSNVIG00000001967 #21	TUBD1 (ENSNVIG00000001981) #22	VMP1 (ENSNVIG00000002020) #23	PTH2 (ENSNVIG00000002036) #24	CLTC (ENSNVIG00000002049) #25	DHX40 (ENSNVIG00000002198) #26	ENSNVIG00000002558	YPEL2 (ENSNVIG00000002566)	GDPD1 (ENSNVIG00000002603) #28	SMG8 (ENSNVIG00000002669)	PRR11 (ENSNVIG00000002688)	ENSNVIG00000002702	ENSNVIG00000002716
Ferret	MODERN SPECIES	181	ZNHIT3 (ENSMPUG00000015094) #7	CA4 (ENSMPUG00000015096) #8	ENSMPUG00000015097 #9	CHCT1 (ENSMPUG00000015101) #10	APPBP2 (ENSMPUG00000015105) #11	PPM1D (ENSMPUG00000015109) #12	BCAS3 (ENSMPUG00000015112) #13	ENSMPUG00000015114	TBX2 (ENSMPUG00000015118) #15	TBX4 (ENSMPUG00000015166) #16	BRIP1 (ENSMPUG00000015169) #17	INTS2 (ENSMPUG00000015171) #18	MED13 (ENSMPUG00000015173) #19	RNFT1 (ENSMPUG00000015178) #20	RPS6KB1 (ENSMPUG00000015180) #21	TUBD1 (ENSMPUG00000015186) #22	VMP1 (ENSMPUG00000015206) #23	PTRH2 (ENSMPUG00000019628) #24	CLTC (ENSMPUG00000015209) #25	DHX40 (ENSMPUG00000015213) #26	ENSMPUG00000015215	GDPD1 (ENSMPUG00000015216) #28	SMG8 (ENSMPUG00000015224)	PRR11 (ENSMPUG00000015240)	SKA2 (ENSMPUG00000015241)	TRIM37 (ENSMPUG00000015244)	PPM1E (ENSMPUG00000015274)	RAD51C (ENSMPUG00000015277)	TEX14 (ENSMPUG00000015283)	ENSMPUG00000015284	SEPTIN4 (ENSMPUG00000015285)
Ursidae	ANCESTRAL SPECIES	18	ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b.l #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a.d #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.fb.a	ENSGT00410000025800	ENSGT00950000185259	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00940000157152.C
Ursus	ANCESTRAL SPECIES	8	ENSGT00390000010822 #7	ENSGT00940000167417.b	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b.l #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a.d #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.fb.a	ENSGT00410000025800	ENSGT00950000185259	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00940000157152.C
Polar bear	MODERN SPECIES	192	ENSUMAG00000022216	ENSUMAG00000022218	ENSUMAG00000022224	CA4 (ENSUMAG00000022226) #8	ENSUMAG00000022236 #9	CHCT1 (ENSUMAG00000022249) #10	APPBP2 (ENSUMAG00000022254) #11	PPM1D (ENSUMAG00000022258) #12	BCAS3 (ENSUMAG00000022262) #13	TBX4 (ENSUMAG00000022274) #16	BRIP1 (ENSUMAG00000022291) #17	INTS2 (ENSUMAG00000022361) #18	MED13 (ENSUMAG00000022542) #19	RNFT1 (ENSUMAG00000022703) #20	RPS6KB1 (ENSUMAG00000022704) #21	TUBD1 (ENSUMAG00000022706) #22	VMP1 (ENSUMAG00000022708) #23	PTRH2 (ENSUMAG00000022710) #24	CLTC (ENSUMAG00000022714) #25	DHX40 (ENSUMAG00000022721) #26	ENSUMAG00000022722	YPEL2 (ENSUMAG00000022727)	GDPD1 (ENSUMAG00000022732) #28	SMG8 (ENSUMAG00000022733)	PRR11 (ENSUMAG00000022737)	SKA2 (ENSUMAG00000022744)	TRIM37 (ENSUMAG00000022750)	RAD51C (ENSUMAG00000022762)	TEX14 (ENSUMAG00000022770)	ENSUMAG00000022793	MTMR4 (ENSUMAG00000022796)
American black bear	MODERN SPECIES	1791													ENSUAMG00000017669 #19	RNFT1 (ENSUAMG00000017667) #20	RPS6KB1 (ENSUAMG00000016594) #21	TUBD1 (ENSUAMG00000016575) #22
Giant Panda	MODERN SPECIES	4	ENSAMEG00000008200 #7	ENSAMEG00000024684	ENSAMEG00000008196 #8	ENSAMEG00000008169 #9	CHCT1 (ENSAMEG00000008166) #10	APPBP2 (ENSAMEG00000008127) #11	PPM1D (ENSAMEG00000008112) #12	BCAS3 (ENSAMEG00000008103) #13	TBX2 (ENSAMEG00000008826) #15	TBX4 (ENSAMEG00000008802) #16	BRIP1 (ENSAMEG00000008785) #17	INTS2 (ENSAMEG00000008767) #18	ENSAMEG00000008706 #19	ENSAMEG00000011384 #20	RPS6KB1 (ENSAMEG00000011391) #21	TUBD1 (ENSAMEG00000011431) #22	VMP1 (ENSAMEG00000011450) #23	PTRH2 (ENSAMEG00000011479) #24	CLTC (ENSAMEG00000011481) #25	DHX40 (ENSAMEG00000011567) #26	YPEL2 (ENSAMEG00000011600)	GDPD1 (ENSAMEG00000011603) #28	SMG8 (ENSAMEG00000011619)	PRR11 (ENSAMEG00000011622)	TRIM37 (ENSAMEG00000011651)	ENSAMEG00000011659	ENSAMEG00000011592	MTMR4 (ENSAMEG00000011627)	HSF5 (ENSAMEG00000026506)	RNF43 (ENSAMEG00000011678)	SUPT4H1 (ENSAMEG00000011686)
Canidae	ANCESTRAL SPECIES	2	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00390000016475.p.b	ENSGT00950000185321	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.fb.a	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Canis_lupus	ANCESTRAL SPECIES	3	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00390000010512.e.a	ENSGT00940000158882 #16	ENSGT00390000016475.p.b	ENSGT00950000185321	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.fb.a	ENSGT00410000025800	ENSGT00940000164310.e	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146
Dog	MODERN SPECIES	37	ENSCAFG00845028323	ENSCAFG00845028214 #9	CHCT1 (ENSCAFG00845028175) #10	APPBP2 (ENSCAFG00845028094) #11	PPM1D (ENSCAFG00845028053) #12	BCAS3 (ENSCAFG00845027514) #13	TBX2 (ENSCAFG00845027360) #15	ENSCAFG00845027312	TBX4 (ENSCAFG00845027223) #16	ENSCAFG00845027180	BRIP1 (ENSCAFG00845027066) #17	ENSCAFG00845026829 #18	ENSCAFG00845026602 #19	RNFT1 (ENSCAFG00845026431) #20	RPS6KB1 (ENSCAFG00845026236) #21	TUBD1 (ENSCAFG00845025976) #22	VMP1 (ENSCAFG00845025852) #23	PTRH2 (ENSCAFG00845025810) #24	CLTC (ENSCAFG00845025273) #25	DHX40 (ENSCAFG00845024973) #26	YPEL2 (ENSCAFG00845024894)	GDPD1 (ENSCAFG00845024811) #28	SMG8 (ENSCAFG00845024758)	PRR11 (ENSCAFG00845024677)	SKA2 (ENSCAFG00845024401)	TRIM37 (ENSCAFG00845023444)	ENSCAFG00845023256	PPM1E (ENSCAFG00845023199)	RAD51C (ENSCAFG00845023093)	TEX14 (ENSCAFG00845021928)	ENSCAFG00845021758
Dingo	MODERN SPECIES	150	APPBP2 (ENSCAFG00020001929) #11	PPM1D (ENSCAFG00020001906) #12	ENSCAFG00020001897	BCAS3 (ENSCAFG00020001889) #13	TBX2 (ENSCAFG00020001839) #15	ENSCAFG00020001835	TBX4 (ENSCAFG00020001821) #16	ENSCAFG00020001814	ENSCAFG00020001810	BRIP1 (ENSCAFG00020001774) #17	INTS2 (ENSCAFG00020001542) #18	MED13 (ENSCAFG00020001413) #19	ENSCAFG00020001404	RNFT1 (ENSCAFG00020001391) #20	RPS6KB1 (ENSCAFG00020000279) #21	TUBD1 (ENSCAFG00020026511) #22	VMP1 (ENSCAFG00020026504) #23	PTRH2 (ENSCAFG00020026497) #24	CLTC (ENSCAFG00020026080) #25	DHX40 (ENSCAFG00020026016) #26	YPEL2 (ENSCAFG00020026010)	GDPD1 (ENSCAFG00020026008) #28	SMG8 (ENSCAFG00020026006)	PRR11 (ENSCAFG00020026002)	ENSCAFG00020025999	ENSCAFG00020025997	TRIM37 (ENSCAFG00020025989)	ENSCAFG00020025978	PPM1E (ENSCAFG00020025970)	RAD51C (ENSCAFG00020025963)	TEX14 (ENSCAFG00020025940)
Red fox	MODERN SPECIES	20	CA4 (ENSVVUG00000018348) #8	USP32 (ENSVVUG00000018316) #9	CUNH17orf64 (ENSVVUG00000018306) #10	ENSVVUG00000018292	APPBP2 (ENSVVUG00000018282) #11	PPM1D (ENSVVUG00000018272) #12	BCAS3 (ENSVVUG00000018211) #13	TBX2 (ENSVVUG00000018199) #15	TBX4 (ENSVVUG00000018197) #16	ENSVVUG00000018193	BRIP1 (ENSVVUG00000018186) #17	INTS2 (ENSVVUG00000018181) #18	MED13 (ENSVVUG00000018156) #19	RNFT1 (ENSVVUG00000018147) #20	RPS6KB1 (ENSVVUG00000018140) #21	TUBD1 (ENSVVUG00000018135) #22	ENSVVUG00000018127	VMP1 (ENSVVUG00000018124) #23	PTRH2 (ENSVVUG00000018120) #24	CLTC (ENSVVUG00000013604) #25	DHX40 (ENSVVUG00000013502) #26	YPEL2 (ENSVVUG00000013496)	GDPD1 (ENSVVUG00000013493) #28	SMG8 (ENSVVUG00000013487)	PRR11 (ENSVVUG00000013471)	ENSVVUG00000013464	TRIM37 (ENSVVUG00000012926)	PPM1E (ENSVVUG00000012862)	RAD51C (ENSVVUG00000012820)	TEX14 (ENSVVUG00000012705)	ENSVVUG00000012693
Felidae	ANCESTRAL SPECIES	8	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000185321	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000153112.A	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.fb.a	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146
Panthera	ANCESTRAL SPECIES	14	ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000153112.E.f.b.c.a	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.fb.a	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146
Tiger	MODERN SPECIES	247		ENSPTIG00000007142 #7	CA4 (ENSPTIG00000006877) #8	ENSPTIG00000022024 #9	CHCT1 (ENSPTIG00000021993) #10	APPBP2 (ENSPTIG00000021946) #11	PPM1D (ENSPTIG00000021872) #12	BCAS3 (ENSPTIG00000014166) #13	TBX2 (ENSPTIG00000011900) #15	TBX4 (ENSPTIG00000011149) #16	BRIP1 (ENSPTIG00000007851) #17	INTS2 (ENSPTIG00000005455) #18	MED13 (ENSPTIG00000021264) #19	RNFT1 (ENSPTIG00000020911) #20	RPS6KB1 (ENSPTIG00000019785) #21	TUBD1 (ENSPTIG00000016909) #22	VMP1 (ENSPTIG00000016367) #23	PTRH2 (ENSPTIG00000004923) #24	CLTC (ENSPTIG00000009256) #25	DHX40 (ENSPTIG00000006557) #26	ENSPTIG00000003574	YPEL2 (ENSPTIG00000002225)	GDPD1 (ENSPTIG00000021762) #28	SMG8 (ENSPTIG00000021617)	PRR11 (ENSPTIG00000020590)	ENSPTIG00000019263	TRIM37 (ENSPTIG00000015536)	PPM1E (ENSPTIG00000014776)	ENSPTIG00000004236	RAD51C (ENSPTIG00000012660)	TEX14 (ENSPTIG00000020702)
Panthera_a	ANCESTRAL SPECIES	13	ENSGT01100000264525	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000153112.E.f.b.c.a	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.fb.a.a	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146
leopard	MODERN SPECIES	136		ENSPPRG00000013587 #7	CA4 (ENSPPRG00000013930) #8	ENSPPRG00000018249 #9	CHCT1 (ENSPPRG00000019615) #10	APPBP2 (ENSPPRG00000020135) #11	PPM1D (ENSPPRG00000020899) #12	BCAS3 (ENSPPRG00000003428) #13	TBX2 (ENSPPRG00000003717) #15	TBX4 (ENSPPRG00000004161) #16	BRIP1 (ENSPPRG00000006071) #17	INTS2 (ENSPPRG00000006723) #18	MED13 (ENSPPRG00000006840) #19	RNFT1 (ENSPPRG00000006920) #20	RPS6KB1 (ENSPPRG00000007317) #21	TUBD1 (ENSPPRG00000007962) #22	VMP1 (ENSPPRG00000008117) #23	PTRH2 (ENSPPRG00000018489) #24	CLTC (ENSPPRG00000009768) #25	DHX40 (ENSPPRG00000010073) #26	ENSPPRG00000010092	YPEL2 (ENSPPRG00000010142)	GDPD1 (ENSPPRG00000010197) #28	SMG8 (ENSPPRG00000010209)	PRR11 (ENSPPRG00000010593)	ENSPPRG00000010814	TRIM37 (ENSPPRG00000011368)	PPM1E (ENSPPRG00000011535)	ENSPPRG00000011615
lion	MODERN SPECIES	14	ENSPLOG00000006995	ENSPLOG00000007024 #7	CA4 (ENSPLOG00000007037) #8	ENSPLOG00000007077 #9	CHCT1 (ENSPLOG00000007160) #10	APPBP2 (ENSPLOG00000007194) #11	PPM1D (ENSPLOG00000007226) #12	BCAS3 (ENSPLOG00000007324) #13	TBX2 (ENSPLOG00000007442) #15	TBX4 (ENSPLOG00000007486) #16	BRIP1 (ENSPLOG00000007545) #17	INTS2 (ENSPLOG00000007597) #18	MED13 (ENSPLOG00000007750) #19	RNFT1 (ENSPLOG00000007896) #20	RPS6KB1 (ENSPLOG00000007950) #21	TUBD1 (ENSPLOG00000008072) #22	VMP1 (ENSPLOG00000008206) #23	PTRH2 (ENSPLOG00000008252) #24	CLTC (ENSPLOG00000008302) #25	DHX40 (ENSPLOG00000008728) #26	ENSPLOG00000009014	YPEL2 (ENSPLOG00000009131)	GDPD1 (ENSPLOG00000009208) #28	SMG8 (ENSPLOG00000009357)	PRR11 (ENSPLOG00000009401)	ENSPLOG00000009472	TRIM37 (ENSPLOG00000009740)	ENSPLOG00000010176	ENSPLOG00000010201	ENSPLOG00000010247	RAD51C (ENSPLOG00000010276)
Cat	MODERN SPECIES	245	ENSFCAG00000046508	ZNHIT3 (ENSFCAG00000028458) #7	CA4 (ENSFCAG00000009073) #8	USP32 (ENSFCAG00000027422) #9	CHCT1 (ENSFCAG00000039169) #10	APPBP2 (ENSFCAG00000023791) #11	BCAS3 (ENSFCAG00000008992) #13	TBX2 (ENSFCAG00000008993) #15	TBX4 (ENSFCAG00000026664) #16	ENSFCAG00000047319	BRIP1 (ENSFCAG00000018470) #17	INTS2 (ENSFCAG00000028418) #18	MED13 (ENSFCAG00000014905) #19	RNFT1 (ENSFCAG00000005818) #20	RPS6KB1 (ENSFCAG00000023434) #21	TUBD1 (ENSFCAG00000003784) #22	VMP1 (ENSFCAG00000003783) #23	PTRH2 (ENSFCAG00000018969) #24	CLTC (ENSFCAG00000027260) #25	DHX40 (ENSFCAG00000001409) #26	ENSFCAG00000024255	YPEL2 (ENSFCAG00000043476)	GDPD1 (ENSFCAG00000042550) #28	SMG8 (ENSFCAG00000013335)	PRR11 (ENSFCAG00000018819)	TRIM37 (ENSFCAG00000013333)	ENSFCAG00000048964	PPM1E (ENSFCAG00000045709)	ENSFCAG00000030731	ENSFCAG00000053242	RAD51C (ENSFCAG00000024636)
Laurasiatheria_c	ANCESTRAL SPECIES	3	ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Chiroptera	ANCESTRAL SPECIES	2	ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Microchiroptera	ANCESTRAL SPECIES		ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Greater horseshoe bat	MODERN SPECIES	13	MYO19 (ENSRFEG00010008050)	ZNHIT3 (ENSRFEG00010008147) #7	CA4 (ENSRFEG00010008180) #8	ENSRFEG00010008269 #9	CHCT1 (ENSRFEG00010008642) #10	APPBP2 (ENSRFEG00010008699) #11	PPM1D (ENSRFEG00010008764) #12	BCAS3 (ENSRFEG00010008840) #13	TBX2 (ENSRFEG00010008996) #15	TBX4 (ENSRFEG00010009033) #16	BRIP1 (ENSRFEG00010009176) #17	INTS2 (ENSRFEG00010009482) #18	MED13 (ENSRFEG00010009796) #19	RNFT1 (ENSRFEG00010009866) #20	RPS6KB1 (ENSRFEG00010009926) #21	TUBD1 (ENSRFEG00010010052) #22	VMP1 (ENSRFEG00010010232) #23	ENSRFEG00010010290 #24	CLTC (ENSRFEG00010010360) #25	DHX40 (ENSRFEG00010010522) #26	YPEL2 (ENSRFEG00010011000)	GDPD1 (ENSRFEG00010011038) #28	SMG8 (ENSRFEG00010011133)	PRR11 (ENSRFEG00010011197)	SKA2 (ENSRFEG00010011373)	TRIM37 (ENSRFEG00010011554)	PPM1E (ENSRFEG00010011969)	RAD51C (ENSRFEG00010012001)	TEX14 (ENSRFEG00010012065)	ENSRFEG00010013387	ENSRFEG00010013494
Microbat	MODERN SPECIES	1036	ZNHIT3 (ENSMLUG00000013155) #7	ENSMLUG00000024982 #8	ENSMLUG00000004162 #9	CHCT1 (ENSMLUG00000000469) #10	APPBP2 (ENSMLUG00000000472) #11	PPM1D (ENSMLUG00000000476) #12	ENSMLUG00000026663	BCAS3 (ENSMLUG00000011632) #13	TBX2 (ENSMLUG00000011673) #15	TBX4 (ENSMLUG00000011682) #16	BRIP1 (ENSMLUG00000003866) #17	INTS2 (ENSMLUG00000003877) #18	MED13 (ENSMLUG00000003891) #19	ENSMLUG00000003676 #20	RPS6KB1 (ENSMLUG00000003666) #21	TUBD1 (ENSMLUG00000003662) #22	VMP1 (ENSMLUG00000003657) #23	PTRH2 (ENSMLUG00000025120) #24	CLTC (ENSMLUG00000003649) #25	DHX40 (ENSMLUG00000003644) #26	ENSMLUG00000024642	YPEL2 (ENSMLUG00000029934)	GDPD1 (ENSMLUG00000002268) #28	GOSR2 (ENSMLUG00000002709)	WNT9B (ENSMLUG00000002716)	WNT3 (ENSMLUG00000030546)	ENSMLUG00000014735	ENSMLUG00000027897	CRHR1 (ENSMLUG00000011249)	MAPT (ENSMLUG00000004926)	KANSL1 (ENSMLUG00000004937)
Megabat	MODERN SPECIES	1589																TUBD1 (ENSPVAG00000016847) #22	VMP1 (ENSPVAG00000016846) #23
Equus	ANCESTRAL SPECIES		ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00990000214200	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000164942 #27	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b
Donkey	MODERN SPECIES	4	ENSEASG00005002142	ENSEASG00005002153 #8	ENSEASG00005002159 #9	CHCT1 (ENSEASG00005002167) #10	APPBP2 (ENSEASG00005002171) #11	PPM1D (ENSEASG00005002175) #12	BCAS3 (ENSEASG00005002183) #13	ENSEASG00005002197	TBX2 (ENSEASG00005002209) #15	TBX4 (ENSEASG00005002225) #16	BRIP1 (ENSEASG00005002238) #17	INTS2 (ENSEASG00005025536) #18	ENSEASG00005002274 #19	ENSEASG00005002283 #20	RPS6KB1 (ENSEASG00005002287) #21	TUBD1 (ENSEASG00005002295) #22	VMP1 (ENSEASG00005002304) #23	PTRH2 (ENSEASG00005036728) #24	ENSEASG00005002307	CLTC (ENSEASG00005031947) #25	DHX40 (ENSEASG00005002476) #26	YPEL2 (ENSEASG00005035158)	SMG8 (ENSEASG00005002523)	PRR11 (ENSEASG00005002527)	ENSEASG00005027448	TRIM37 (ENSEASG00005002615)	PPM1E (ENSEASG00005002749)	RAD51C (ENSEASG00005002751)	TEX14 (ENSEASG00005026509)	SEPTIN4 (ENSEASG00005002775)	MTMR4 (ENSEASG00005002781)
Horse	MODERN SPECIES	2	CA4 (ENSECAG00000022739) #8	USP32 (ENSECAG00000018702) #9	ENSECAG00000046356	CHCT1 (ENSECAG00000050359) #10	APPBP2 (ENSECAG00000016822) #11	PPM1D (ENSECAG00000014869) #12	ENSECAG00000003698	BCAS3 (ENSECAG00000008651) #13	TBX2 (ENSECAG00000024480) #15	TBX4 (ENSECAG00000024414) #16	BRIP1 (ENSECAG00000024392) #17	INTS2 (ENSECAG00000020839) #18	MED13 (ENSECAG00000017895) #19	ENSECAG00000017636 #20	RPS6KB1 (ENSECAG00000013890) #21	TUBD1 (ENSECAG00000010962) #22	ENSECAG00000010478	VMP1 (ENSECAG00000005570) #23	PTRH2 (ENSECAG00000003621) #24	CLTC (ENSECAG00000019077) #25	DHX40 (ENSECAG00000018606) #26	YPEL2 (ENSECAG00000018575) #27	GDPD1 (ENSECAG00000015552) #28	SMG8 (ENSECAG00000015244)	PRR11 (ENSECAG00000015060)	ENSECAG00000047688	ENSECAG00000044134	TRIM37 (ENSECAG00000009239)	PPM1E (ENSECAG00000008191)	RAD51C (ENSECAG00000003367)	TEX14 (ENSECAG00000023617)
Eulipotyphla	ANCESTRAL SPECIES	224														ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23
Hedgehog	MODERN SPECIES	1123																TUBD1 (ENSEEUG00000012996) #22
Common shrew	MODERN SPECIES	3335														RNFT1 (ENSSARG00000008870) #20	RPS6KB1 (ENSSARG00000008834) #21	TUBD1 (ENSSARG00000008824) #22	VMP1 (ENSSARG00000008812) #23
Atlantogenata	ANCESTRAL SPECIES	1	ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Afrotheria	ANCESTRAL SPECIES	2	ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Afrotheria_a	ANCESTRAL SPECIES	2	ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000018146	ENSGT00940000157152.C
Elephant	MODERN SPECIES	310	MYO19 (ENSLAFG00000009537)	ENSLAFG00000009532 #7	CA4 (ENSLAFG00000007673) #8	ENSLAFG00000007676 #9	CHCT1 (ENSLAFG00000026714) #10	APPBP2 (ENSLAFG00000017099) #11	PPM1D (ENSLAFG00000006586) #12	BCAS3 (ENSLAFG00000006591) #13	TBX2 (ENSLAFG00000006596) #15	TBX4 (ENSLAFG00000006608) #16	BRIP1 (ENSLAFG00000014884) #17	INTS2 (ENSLAFG00000021978) #18	MED13 (ENSLAFG00000014408) #19	RNFT1 (ENSLAFG00000014266) #20	RPS6KB1 (ENSLAFG00000014259) #21	TUBD1 (ENSLAFG00000014254) #22	VMP1 (ENSLAFG00000014247) #23	PTRH2 (ENSLAFG00000031641) #24	CLTC (ENSLAFG00000014236) #25	DHX40 (ENSLAFG00000000087) #26	YPEL2 (ENSLAFG00000003670)	GDPD1 (ENSLAFG00000015245) #28	SMG8 (ENSLAFG00000015241)	PRR11 (ENSLAFG00000018500)	SKA2 (ENSLAFG00000003405)	TRIM37 (ENSLAFG00000003398)	PPM1E (ENSLAFG00000003394)	RAD51C (ENSLAFG00000003392)	TEX14 (ENSLAFG00000003387)	ENSLAFG00000030254	ENSLAFG00000003381
Hyrax	MODERN SPECIES	4000																TUBD1 (ENSPCAG00000007900) #22	VMP1 (ENSPCAG00000007853) #23
Tenrec	MODERN SPECIES	4300														RNFT1 (ENSETEG00000018069) #20	RPS6KB1 (ENSETEG00000018063) #21	TUBD1 (ENSETEG00000018060) #22	VMP1 (ENSETEG00000018057) #23
Xenarthra	ANCESTRAL SPECIES	743														ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26
Sloth	MODERN SPECIES	887																ENSCHOG00000013774 #22
Armadillo	MODERN SPECIES	1470														ENSDNOG00000002505 #20	RPS6KB1 (ENSDNOG00000002501) #21	TUBD1 (ENSDNOG00000001091) #22	VMP1 (ENSDNOG00000024528) #23	PTRH2 (ENSDNOG00000031122) #24	CLTC (ENSDNOG00000008125) #25	DHX40 (ENSDNOG00000025497) #26	ANAPC1 (ENSDNOG00000034863)	ENSDNOG00000041143
Marsupialia	ANCESTRAL SPECIES	3	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00940000170057	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230.g #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000008983.b	ENSGT00390000018146
Marsupialia_b	ANCESTRAL SPECIES	26	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00940000170057	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230.g #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.a	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000008983.b	ENSGT00940000157152.C
Diprotodontia	ANCESTRAL SPECIES	33	ENSGT01100000264066	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00940000170057	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230.g #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.a	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000008983.b	ENSGT00940000157152.C
Diprotodontia_a	ANCESTRAL SPECIES	32	ENSGT01100000264066	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00940000170057	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230.g #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000161569.vb.b	ENSGT00940000164942 #27	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588.a	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT00390000008983.b
Common wonbat	MODERN SPECIES	1034	MYO19 (ENSVURG00010012080)	ENSVURG00010012125	ENSVURG00010012134 #8	ENSVURG00010012139 #9	CHCT1 (ENSVURG00010012156) #10	APPBP2 (ENSVURG00010012164) #11	PPM1D (ENSVURG00010012176) #12	BCAS3 (ENSVURG00010012189) #13	TBX2 (ENSVURG00010012230) #15	TBX4 (ENSVURG00010012239) #16	BRIP1 (ENSVURG00010012249) #17	INTS2 (ENSVURG00010012279) #18	MED13 (ENSVURG00010012321) #19	RNFT1 (ENSVURG00010012350) #20	RPS6KB1 (ENSVURG00010012365) #21	TUBD1 (ENSVURG00010012420) #22	VMP1 (ENSVURG00010012452) #23	ENSVURG00010012460	PTRH2 (ENSVURG00010012466) #24	CLTC (ENSVURG00010012484) #25	DHX40 (ENSVURG00010012524) #26	ENSVURG00010012544	ENSVURG00010012552 #27	GDPD1 (ENSVURG00010012560) #28	SMG8 (ENSVURG00010012571)	ENSVURG00010012580	ENSVURG00010012590	TRIM37 (ENSVURG00010012625)	PPM1E (ENSVURG00010012683)	RAD51C (ENSVURG00010012694)	TEX14 (ENSVURG00010012722)
koala	MODERN SPECIES	42	ENSPCIG00000013190	ENSPCIG00000013189 #8	ENSPCIG00000013182 #9	CHCT1 (ENSPCIG00000013181) #10	APPBP2 (ENSPCIG00000013180) #11	PPM1D (ENSPCIG00000013179) #12	ENSPCIG00000036036	BCAS3 (ENSPCIG00000013178) #13	TBX2 (ENSPCIG00000013176) #15	TBX4 (ENSPCIG00000013174) #16	BRIP1 (ENSPCIG00000013168) #17	INTS2 (ENSPCIG00000027084) #18	MED13 (ENSPCIG00000027082) #19	RNFT1 (ENSPCIG00000021881) #20	RPS6KB1 (ENSPCIG00000021880) #21	TUBD1 (ENSPCIG00000021879) #22	VMP1 (ENSPCIG00000021878) #23	ENSPCIG00000021877	PTRH2 (ENSPCIG00000021876) #24	CLTC (ENSPCIG00000021875) #25	DHX40 (ENSPCIG00000021874) #26	ENSPCIG00000021873	ENSPCIG00000021872	GDPD1 (ENSPCIG00000021871) #28	SMG8 (ENSPCIG00000011142)	ENSPCIG00000011141	ENSPCIG00000011136	TRIM37 (ENSPCIG00000015543)	PPM1E (ENSPCIG00000015544)	RAD51C (ENSPCIG00000015547)	TEX14 (ENSPCIG00000015559)
Wallaby	MODERN SPECIES	1760																ENSMEUG00000012325 #22
Tasmanian devil	MODERN SPECIES	3	ENSSHAG00000031683 #8	ENSSHAG00000025956 #9	ENSSHAG00000020615	CHCT1 (ENSSHAG00000005516) #10	APPBP2 (ENSSHAG00000001280) #11	ENSSHAG00000004858 #12	ENSSHAG00000025025	BCAS3 (ENSSHAG00000005780) #13	TBX2 (ENSSHAG00000012290) #15	TBX4 (ENSSHAG00000012638) #16	INTS2 (ENSSHAG00000030854) #18	BRIP1 (ENSSHAG00000014610) #17	ENSSHAG00000014867 #19	ENSSHAG00000016041 #20	RPS6KB1 (ENSSHAG00000016073) #21	TUBD1 (ENSSHAG00000016164) #22	VMP1 (ENSSHAG00000016264) #23	PTRH2 (ENSSHAG00000016608) #24	CLTC (ENSSHAG00000016622) #25	DHX40 (ENSSHAG00000016859) #26	YPEL2 (ENSSHAG00000030354)	SMG8 (ENSSHAG00000017572)	ENSSHAG00000017585	SKA2 (ENSSHAG00000022695)	TRIM37 (ENSSHAG00000030805)	PPM1E (ENSSHAG00000002831)	RAD51C (ENSSHAG00000007212)	TEX14 (ENSSHAG00000008051)	ENSSHAG00000009310	ENSSHAG00000023299	ENSSHAG00000010070
Opossum	MODERN SPECIES	1	ENSMODG00000027392	ENSMODG00000014115 #8	ENSMODG00000014128 #9	CHCT1 (ENSMODG00000014142) #10	ENSMODG00000014137	PPM1D (ENSMODG00000014156) #12	BCAS3 (ENSMODG00000014187) #13	TBX2 (ENSMODG00000014204) #15	TBX4 (ENSMODG00000014216) #16	BRIP1 (ENSMODG00000014258) #17	ENSMODG00000028930	INTS2 (ENSMODG00000014273) #18	MED13 (ENSMODG00000014293) #19	RNFT1 (ENSMODG00000014301) #20	ENSMODG00000014313 #21	TUBD1 (ENSMODG00000014323) #22	VMP1 (ENSMODG00000014339) #23	ENSMODG00000024517 #24	CLTC (ENSMODG00000014431) #25	DHX40 (ENSMODG00000014468) #26	YPEL2 (ENSMODG00000014585)	GDPD1 (ENSMODG00000014598) #28	SMG8 (ENSMODG00000014605)	ENSMODG00000028612	SKA2 (ENSMODG00000014619)	TRIM37 (ENSMODG00000014632)	PPM1E (ENSMODG00000044498)	RAD51C (ENSMODG00000014643)	ENSMODG00000014649	ENSMODG00000014654	ENSMODG00000047188
Platypus	MODERN SPECIES	8	MYO19 (ENSOANG00000011516)	ENSOANG00000048709	ENSOANG00000044439 #8	ENSOANG00000011519 #9	ENSOANG00000011521 #10	APPBP2 (ENSOANG00000011522) #11	PPM1D (ENSOANG00000011523) #12	BCAS3 (ENSOANG00000011524) #13	TBX2 (ENSOANG00000042904) #15	TBX4 (ENSOANG00000011525) #16	BRIP1 (ENSOANG00000011526) #17	INTS2 (ENSOANG00000002229) #18	MED13 (ENSOANG00000002228) #19	RNFT1 (ENSOANG00000002227) #20	RPS6KB1 (ENSOANG00000002226) #21	TUBD1 (ENSOANG00000002225) #22	VMP1 (ENSOANG00000002224) #23	ENSOANG00000008523 #24	CLTC (ENSOANG00000008521) #25	DHX40 (ENSOANG00000008516) #26	YPEL2 (ENSOANG00000050607)	GDPD1 (ENSOANG00000008511) #28	PRR11 (ENSOANG00000020555)	ENSOANG00000046315	SMG8 (ENSOANG00000008508)	TRIM37 (ENSOANG00000008498)	PPM1E (ENSOANG00000040995)	RAD51C (ENSOANG00000008491)	ENSOANG00000008488	ENSOANG00000046043	ENSOANG00000042891
Sauria	ANCESTRAL SPECIES	18	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672.e.b #12	ENSGT00940000170057	ENSGT00940000165546	ENSGT00940000155672.f #12	ENSGT00390000006454 #13	ENSGT00940000169979	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00940000164942 #27	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT01030000235145	ENSGT00390000015123.b
Archelosauria	ANCESTRAL SPECIES	18	ENSGT00390000010822 #7	ENSGT00670000098452	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672.f #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT01030000235145	ENSGT00390000015123.b	ENSGT01030000234549.a.a.b
Archosauria	ANCESTRAL SPECIES	18	ENSGT00390000010822 #7	ENSGT00670000098452	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672.f #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT01030000234549.a.a.b	ENSGT00940000156758
Aves	ANCESTRAL SPECIES	18	ENSGT00390000010822 #7	ENSGT00670000098452	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672.f #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT01030000235145	ENSGT01030000234549.a.a.b
Neognathae	ANCESTRAL SPECIES	18	ENSGT00390000010822 #7	ENSGT00670000098452	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672.f #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT01030000235145	ENSGT01030000234549.a.a.b
Neognathae_b	ANCESTRAL SPECIES	20	ENSGT00390000010822 #7	ENSGT00670000098452	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672.f #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT01030000234549.a.a.b	ENSGT00940000156758
Neognathae_c	ANCESTRAL SPECIES	22	ENSGT00390000010822 #7	ENSGT00670000098452	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672.f #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT01030000234549.a.a.b	ENSGT00940000156758
Kakapo	MODERN SPECIES	58	ZNHIT3 (ENSSHBG00005008526) #7	ENSSHBG00005008547	CA4 (ENSSHBG00005008573) #8	ENSSHBG00005008623 #9	CHCT1 (ENSSHBG00005008899) #10	APPBP2 (ENSSHBG00005008910) #11	PPM1D (ENSSHBG00005008923) #12	BCAS3 (ENSSHBG00005008954) #13	TBX2 (ENSSHBG00005009046) #15	TBX4 (ENSSHBG00005009051) #16	BRIP1 (ENSSHBG00005009072) #17	INTS2 (ENSSHBG00005009113) #18	MED13 (ENSSHBG00005009279) #19	RNFT1 (ENSSHBG00005014016) #20	RPS6KB1 (ENSSHBG00005014054) #21	TUBD1 (ENSSHBG00005014778) #22	VMP1 (ENSSHBG00005014781) #23	PTRH2 (ENSSHBG00005014786) #24	CLTC (ENSSHBG00005014793) #25	DHX40 (ENSSHBG00005014811) #26	YPEL2 (ENSSHBG00005014887)	GDPD1 (ENSSHBG00005014893) #28	SMG8 (ENSSHBG00005014901)	SKA2 (ENSSHBG00005014915)	ENSSHBG00005015000	SPNS3 (ENSSHBG00005016108)	SPNS2 (ENSSHBG00005016109)	MYBBP1A (ENSSHBG00005016115)	EIF4H (ENSSHBG00005016124)	RFC2 (ENSSHBG00005016129)	CLIP2 (ENSSHBG00005016134)
Golden eagle	MODERN SPECIES	1	ZNHIT3 (ENSACCG00020007411) #7	ENSACCG00020007402	CA4 (ENSACCG00020007393) #8	ENSACCG00020007366 #9	CHCT1 (ENSACCG00020007346) #10	APPBP2 (ENSACCG00020007332) #11	PPM1D (ENSACCG00020007311) #12	BCAS3 (ENSACCG00020007258) #13	TBX2 (ENSACCG00020007211) #15	TBX4 (ENSACCG00020007203) #16	BRIP1 (ENSACCG00020007179) #17	INTS2 (ENSACCG00020007107) #18	MED13 (ENSACCG00020006993) #19	RNFT1 (ENSACCG00020006977) #20	RPS6KB1 (ENSACCG00020006961) #21	TUBD1 (ENSACCG00020006933) #22	VMP1 (ENSACCG00020006892) #23	PTRH2 (ENSACCG00020006879) #24	CLTC (ENSACCG00020006856) #25	DHX40 (ENSACCG00020006821) #26	YPEL2 (ENSACCG00020006797)	GDPD1 (ENSACCG00020006780) #28	SMG8 (ENSACCG00020006761)	PRR11 (ENSACCG00020006740)	SKA2 (ENSACCG00020006719)	TRIM37 (ENSACCG00020006701)	PPM1E (ENSACCG00020006689)	RAD51C (ENSACCG00020006670)	ENSACCG00020006639	ENSACCG00020006603	DOC2B (ENSACCG00020006585)
Passeriformes	ANCESTRAL SPECIES	18	ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00670000098452	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000010722 #11	ENSGT00940000155672.f #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT01030000234549.a.a.b	ENSGT00940000156758
Passeriformes_d	ANCESTRAL SPECIES	18	ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00670000098452	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000010722 #11	ENSGT00940000155672.f #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT01030000234549.a.a.b.b	ENSGT00940000156758
Passeriformes_g	ANCESTRAL SPECIES	18	ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00670000098452	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000010722 #11	ENSGT00940000155672.f #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT01030000234549.a.a.b.b	ENSGT00940000156758
Medium ground finch	MODERN SPECIES	71	MYO19 (ENSGFOG00000010706)	ENSGFOG00000010727	ENSGFOG00000010730	CA4 (ENSGFOG00000010748) #8	ENSGFOG00000010896 #9	ENSGFOG00000008463	PPM1D (ENSGFOG00000008486) #12	BCAS3 (ENSGFOG00000008504) #13	TBX2 (ENSGFOG00000008544) #15	TBX4 (ENSGFOG00000008554) #16	BRIP1 (ENSGFOG00000008564) #17	INTS2 (ENSGFOG00000008589) #18	MED13 (ENSGFOG00000008779) #19	RNFT1 (ENSGFOG00000011367) #20	RPS6KB1 (ENSGFOG00000011373) #21	TUBD1 (ENSGFOG00000011382) #22	VMP1 (ENSGFOG00000011397) #23	PTRH2 (ENSGFOG00000011404) #24	CLTC (ENSGFOG00000011412) #25	DHX40 (ENSGFOG00000011461) #26	YPEL2 (ENSGFOG00000011484)	GDPD1 (ENSGFOG00000011490) #28	SMG8 (ENSGFOG00000011500)	PRR11 (ENSGFOG00000011510)	ENSGFOG00000011516	TRIM37 (ENSGFOG00000011524)	PPM1E (ENSGFOG00000011537)	RAD51C (ENSGFOG00000011542)	TEX14 (ENSGFOG00000011565)	ENSGFOG00000011578	DOC2B (ENSGFOG00000011584)
Passeroidea	ANCESTRAL SPECIES	20	ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00670000098452	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000010722 #11	ENSGT00940000155672.f #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT01030000234549.a.a.b.b	ENSGT00940000156758
Zebra finch	MODERN SPECIES	10	PIGW (ENSTGUG00000008016)	MYO19 (ENSTGUG00000007997)	ENSTGUG00000007995	CA4 (ENSTGUG00000007977) #8	ENSTGUG00000007936 #9	ENSTGUG00000007896	PPM1D (ENSTGUG00000007882) #12	BCAS3 (ENSTGUG00000007829) #13	TBX2 (ENSTGUG00000007813) #15	TBX4 (ENSTGUG00000007802) #16	BRIP1 (ENSTGUG00000007767) #17	INTS2 (ENSTGUG00000007739) #18	MED13 (ENSTGUG00000007709) #19	RNFT1 (ENSTGUG00000007693) #20	RPS6KB1 (ENSTGUG00000007657) #21	TUBD1 (ENSTGUG00000007642) #22	VMP1 (ENSTGUG00000007616) #23	PTRH2 (ENSTGUG00000007610) #24	CLTC (ENSTGUG00000007540) #25	DHX40 (ENSTGUG00000007512) #26	ENSTGUG00000028189	ENSTGUG00000007505	GDPD1 (ENSTGUG00000028481) #28	SMG8 (ENSTGUG00000007488)	PRR11 (ENSTGUG00000007485)	ENSTGUG00000007482	TRIM37 (ENSTGUG00000007430)	PPM1E (ENSTGUG00000028395)	RAD51C (ENSTGUG00000007397)	TEX14 (ENSTGUG00000007388)	ENSTGUG00000007365
Common canary	MODERN SPECIES	28	MYO19 (ENSSCAG00000011266)	ZNHIT3 (ENSSCAG00000011260) #7	ENSSCAG00000011259	CA4 (ENSSCAG00000011254) #8	ENSSCAG00000011244 #9	APPBP2 (ENSSCAG00000011242) #11	PPM1D (ENSSCAG00000011231) #12	BCAS3 (ENSSCAG00000011216) #13	ENSSCAG00000011208 #15	TBX4 (ENSSCAG00000011204) #16	BRIP1 (ENSSCAG00000011182) #17	INTS2 (ENSSCAG00000011174) #18	MED13 (ENSSCAG00000010898) #19	RNFT1 (ENSSCAG00000010831) #20	RPS6KB1 (ENSSCAG00000010826) #21	TUBD1 (ENSSCAG00000010818) #22	VMP1 (ENSSCAG00000010807) #23	PTRH2 (ENSSCAG00000010794) #24	CLTC (ENSSCAG00000010783) #25	DHX40 (ENSSCAG00000010744) #26	YPEL2 (ENSSCAG00000010732)	GDPD1 (ENSSCAG00000010726) #28	SMG8 (ENSSCAG00000010715)	PRR11 (ENSSCAG00000010703)	ENSSCAG00000010699	TRIM37 (ENSSCAG00000010682)	PPM1E (ENSSCAG00000010672)	RAD51C (ENSSCAG00000010657)	TEX14 (ENSSCAG00000010644)	ENSSCAG00000010634	DOC2B (ENSSCAG00000010612)
Flycatcher	MODERN SPECIES	9	PIGW (ENSFALG00000015077)	MYO19 (ENSFALG00000005347)	ENSFALG00000015093	CA4 (ENSFALG00000025811) #8	ENSFALG00000005365 #9	ENSFALG00000005385	PPM1D (ENSFALG00000005405) #12	BCAS3 (ENSFALG00000005422) #13	TBX2 (ENSFALG00000005458) #15	TBX4 (ENSFALG00000005474) #16	BRIP1 (ENSFALG00000005489) #17	INTS2 (ENSFALG00000005505) #18	MED13 (ENSFALG00000005513) #19	RNFT1 (ENSFALG00000027126) #20	RPS6KB1 (ENSFALG00000005531) #21	TUBD1 (ENSFALG00000005556) #22	VMP1 (ENSFALG00000005565) #23	PTRH2 (ENSFALG00000015110) #24	CLTC (ENSFALG00000005575) #25	DHX40 (ENSFALG00000005587) #26	YPEL2 (ENSFALG00000025770)	GDPD1 (ENSFALG00000025109) #28	SMG8 (ENSFALG00000005614)	PRR11 (ENSFALG00000005623)	ENSFALG00000005626	TRIM37 (ENSFALG00000005640)	PPM1E (ENSFALG00000023551)	RAD51C (ENSFALG00000005667)	TEX14 (ENSFALG00000005679)	ENSFALG00000005686	ENSFALG00000023504
Great tit	MODERN SPECIES	9	MYO19 (ENSPMJG00000019841)	ENSPMJG00000019840	CA4 (ENSPMJG00000019839) #8	ENSPMJG00000019838 #9	APPBP2 (ENSPMJG00000019837) #11	PPM1D (ENSPMJG00000019835) #12	BCAS3 (ENSPMJG00000019834) #13	TBX2 (ENSPMJG00000019833) #15	TBX4 (ENSPMJG00000019832) #16	ENSPMJG00000019831	BRIP1 (ENSPMJG00000019830) #17	INTS2 (ENSPMJG00000019829) #18	MED13 (ENSPMJG00000019828) #19	RNFT1 (ENSPMJG00000019827) #20	RPS6KB1 (ENSPMJG00000019826) #21	TUBD1 (ENSPMJG00000019825) #22	VMP1 (ENSPMJG00000019823) #23	PTRH2 (ENSPMJG00000019822) #24	CLTC (ENSPMJG00000019821) #25	DHX40 (ENSPMJG00000019820) #26	YPEL2 (ENSPMJG00000019819)	GDPD1 (ENSPMJG00000019818) #28	SMG8 (ENSPMJG00000019817)	PRR11 (ENSPMJG00000019816)	SKA2 (ENSPMJG00000019814)	TRIM37 (ENSPMJG00000019813)	PPM1E (ENSPMJG00000019812)	RAD51C (ENSPMJG00000019811)	TEX14 (ENSPMJG00000019809)	ENSPMJG00000019808	DOC2B (ENSPMJG00000019807)
Galloanserae	ANCESTRAL SPECIES	17	ENSGT00390000010822 #7	ENSGT00670000098452	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672.f #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT01030000235145	ENSGT01030000234549.a.a.b
Anatidae	ANCESTRAL SPECIES	34	ENSGT00670000098452	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672.f #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a.c #17	ENSGT00950000182970.A.a.d #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT01030000234549.a.a.b	ENSGT00940000156758	ENSGT00960000189399
Pink-footed goose	MODERN SPECIES	63	MYO19 (ENSABRG00000019578)	ENSABRG00000019587	ENSABRG00000019590	CA4 (ENSABRG00000019594) #8	ENSABRG00000019609 #9	CHCT1 (ENSABRG00000019618) #10	APPBP2 (ENSABRG00000019622) #11	PPM1D (ENSABRG00000019627) #12	BCAS3 (ENSABRG00000019631) #13	TBX2 (ENSABRG00000019647) #15	TBX4 (ENSABRG00000019653) #16	BRIP1 (ENSABRG00000000819) #17	MED13 (ENSABRG00000001762) #19	RNFT1 (ENSABRG00000004039) #20	RPS6KB1 (ENSABRG00000004190) #21	TUBD1 (ENSABRG00000005528) #22	VMP1 (ENSABRG00000005663) #23	PTRH2 (ENSABRG00000005900) #24	CLTC (ENSABRG00000005928) #25	DHX40 (ENSABRG00000007210) #26	YPEL2 (ENSABRG00000007432)	GDPD1 (ENSABRG00000007437) #28	SMG8 (ENSABRG00000007439)	SKA2 (ENSABRG00000007444)	TRIM37 (ENSABRG00000007452)	PPM1E (ENSABRG00000007470)	RAD51C (ENSABRG00000007474)	ENSABRG00000007479	ENSABRG00000007493	DOC2B (ENSABRG00000007501)	ENSABRG00000007579
Duck	MODERN SPECIES	11	MYO19 (ENSAPLG00000007223)	ZNHIT3 (ENSAPLG00000021693) #7	CA4 (ENSAPLG00000007520) #8	ENSAPLG00000007802 #9	CHCT1 (ENSAPLG00000026871) #10	APPBP2 (ENSAPLG00000008094) #11	PPM1D (ENSAPLG00000008276) #12	BCAS3 (ENSAPLG00000008363) #13	ENSAPLG00000017871 #15	TBX4 (ENSAPLG00000008848) #16	ENSAPLG00000009095 #17	ENSAPLG00000030301 #17	INTS2 (ENSAPLG00000009449) #18	MED13 (ENSAPLG00000010093) #19	RPS6KB1 (ENSAPLG00000010736) #21	TUBD1 (ENSAPLG00000011163) #22	VMP1 (ENSAPLG00000011498) #23	RNFT1 (ENSAPLG00000010687) #20	CLTC (ENSAPLG00000012095) #25	DHX40 (ENSAPLG00000013368) #26	ENSAPLG00000018497 #27	GDPD1 (ENSAPLG00000013798) #28	SMG8 (ENSAPLG00000013932)	SKA2 (ENSAPLG00000014130)	TRIM37 (ENSAPLG00000014211)	PPM1E (ENSAPLG00000014545)	RAD51C (ENSAPLG00000014623)	TEX14 (ENSAPLG00000009018)	ENSAPLG00000008756	DOC2B (ENSAPLG00000026482)	ENSAPLG00000019474
Phasianidae	ANCESTRAL SPECIES	17	ENSGT00390000010822 #7	ENSGT00670000098452	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672.f #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT01030000234549.a.a.b	ENSGT00940000156758
Phasianidae_b	ANCESTRAL SPECIES	17	ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00670000098452	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000010722 #11	ENSGT00940000155672.f #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT01030000234549.a.a.b	ENSGT00940000156758	ENSGT00390000016836.b
Chicken	MODERN SPECIES	10	MYO19 (ENSGALG00010029181)	ZNHIT3 (ENSGALG00010029173) #7	ENSGALG00010029176	CA4 (ENSGALG00010029180) #8	ENSGALG00010029167 #9	APPBP2 (ENSGALG00010029199) #11	PPM1D (ENSGALG00010029198) #12	BCAS3 (ENSGALG00010029324) #13	TBX2 (ENSGALG00010029321) #15	TBX4 (ENSGALG00010029320) #16	BRIP1 (ENSGALG00010029319) #17	INTS2 (ENSGALG00010029316) #18	MED13 (ENSGALG00010029314) #19	RNFT1 (ENSGALG00010029291) #20	RPS6KB1 (ENSGALG00010029283) #21	TUBD1 (ENSGALG00010029276) #22	VMP1 (ENSGALG00010029274) #23	PTRH2 (ENSGALG00010029259) #24	CLTC (ENSGALG00010029262) #25	DHX40 (ENSGALG00010029260) #26	YPEL2 (ENSGALG00010029257)	GDPD1 (ENSGALG00010029929)	PRR11 (ENSGALG00010029249)	SKA2 (ENSGALG00010029245)	TRIM37 (ENSGALG00010029235)	PPM1E (ENSGALG00010029230)	RAD51C (ENSGALG00010029783)	TEX14 (ENSGALG00010029780)	OPNP (ENSGALG00010029779)	DOC2B (ENSGALG00010029778)	ENSGALG00010029777
Turkey	MODERN SPECIES	13	ENSMGAG00000007083	ENSMGAG00000022814	RAD51C (ENSMGAG00000007095)	ENSMGAG00000007115	ENSMGAG00000007109	SKA2 (ENSMGAG00000007183)	ENSMGAG00000007186	ENSMGAG00000007204	ENSMGAG00000007212 #28	ENSMGAG00000007232 #27	ENSMGAG00000007238 #26	ENSMGAG00000020743 #25	ENSMGAG00000015485 #24	ENSMGAG00000007276 #25	VMP1 (ENSMGAG00000007355) #23	ENSMGAG00000007384 #22	ENSMGAG00000007416	ENSMGAG00000007474 #20	ENSMGAG00000021070 #19	ENSMGAG00000007481 #19	ENSMGAG00000007574 #17	ENSMGAG00000007537 #18	ENSMGAG00000007617 #16	ENSMGAG00000018635 #15	ENSMGAG00000021546	ENSMGAG00000021136	ENSMGAG00000007680 #12	ENSMGAG00000019392 #12	CHCT1 (ENSMGAG00000007719) #10	ENSMGAG00000007687	ENSMGAG00000007837
Japanese quail	MODERN SPECIES	10	MYO19 (ENSCJPG00005017772)	ZNHIT3 (ENSCJPG00005017771) #7	CA4 (ENSCJPG00005017770) #8	ENSCJPG00005017423 #9	CHCT1 (ENSCJPG00005017406) #10	APPBP2 (ENSCJPG00005017404) #11	PPM1D (ENSCJPG00005017402) #12	BCAS3 (ENSCJPG00005017398) #13	TBX2 (ENSCJPG00005017393) #15	TBX4 (ENSCJPG00005017390) #16	BRIP1 (ENSCJPG00005017387) #17	INTS2 (ENSCJPG00005017384) #18	MED13 (ENSCJPG00005017378) #19	RNFT1 (ENSCJPG00005017376) #20	RPS6KB1 (ENSCJPG00005017352) #21	TUBD1 (ENSCJPG00005017351) #22	VMP1 (ENSCJPG00005017317) #23	PTRH2 (ENSCJPG00005017316) #24	CLTC (ENSCJPG00005017272) #25	DHX40 (ENSCJPG00005017271) #26	YPEL2 (ENSCJPG00005017270)	GDPD1 (ENSCJPG00005017249) #28	SMG8 (ENSCJPG00005017248)	SKA2 (ENSCJPG00005017246)	TRIM37 (ENSCJPG00005017245)	PPM1E (ENSCJPG00005017244)	RAD51C (ENSCJPG00005017243)	TEX14 (ENSCJPG00005017240)	ENSCJPG00005017239	DOC2B (ENSCJPG00005017237)	ENSCJPG00005017236
African ostrich	MODERN SPECIES	540	PIGW (ENSSCUG00000005767)	MYO19 (ENSSCUG00000005769)	ENSSCUG00000005772	ENSSCUG00000005773	CA4 (ENSSCUG00000005776) #8	ENSSCUG00000005779 #9	CHCT1 (ENSSCUG00000005782) #10	ENSSCUG00000005785	PPM1D (ENSSCUG00000005788) #12	BCAS3 (ENSSCUG00000005795) #13	BRIP1 (ENSSCUG00000005804) #17	INTS2 (ENSSCUG00000005812) #18	MED13 (ENSSCUG00000005826) #19	RNFT1 (ENSSCUG00000005832) #20	RPS6KB1 (ENSSCUG00000005834) #21	TUBD1 (ENSSCUG00000005837) #22	VMP1 (ENSSCUG00000005848) #23	PTRH2 (ENSSCUG00000005853) #24	CLTC (ENSSCUG00000005861) #25	DHX40 (ENSSCUG00000005878) #26	YPEL2 (ENSSCUG00000005892)	GDPD1 (ENSSCUG00000005893) #28	SMG8 (ENSSCUG00000005894)	PRR11 (ENSSCUG00000005896)	ENSSCUG00000005897	TRIM37 (ENSSCUG00000005900)	PPM1E (ENSSCUG00000005903)	RAD51C (ENSSCUG00000005905)	TEX14 (ENSSCUG00000005910)	ENSSCUG00000005912	RFLNB (ENSSCUG00000005915)
Australian saltwater crocodile	MODERN SPECIES	50	ZNHIT3 (ENSCPRG00005010501) #7	ENSCPRG00005010510	CA4 (ENSCPRG00005010519) #8	ENSCPRG00005010579 #9	CHCT1 (ENSCPRG00005010609) #10	ENSCPRG00005010617	PPM1D (ENSCPRG00005010702) #12	BCAS3 (ENSCPRG00005010708) #13	ENSCPRG00005010719 #15	TBX4 (ENSCPRG00005010723) #16	BRIP1 (ENSCPRG00005010745) #17	INTS2 (ENSCPRG00005010881) #18	MED13 (ENSCPRG00005011121) #19	RNFT1 (ENSCPRG00005011558) #20	RPS6KB1 (ENSCPRG00005011561) #21	TUBD1 (ENSCPRG00005011576) #22	VMP1 (ENSCPRG00005011594) #23	PTRH2 (ENSCPRG00005011628) #24	CLTC (ENSCPRG00005011656) #25	DHX40 (ENSCPRG00005012036) #26	ENSCPRG00005012088 #27	GDPD1 (ENSCPRG00005012095) #28	SMG8 (ENSCPRG00005012103)	PRR11 (ENSCPRG00005012106)	ENSCPRG00005012119	TRIM37 (ENSCPRG00005012136)	PPM1E (ENSCPRG00005012152)	RAD51C (ENSCPRG00005012159)	TEX14 (ENSCPRG00005012167)	ENSCPRG00005012214	DOC2B (ENSCPRG00005012509)
Cryptodira	ANCESTRAL SPECIES	18	ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672.f #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT01030000235145	ENSGT00390000015123.b	ENSGT01030000234549.a.a.b
Testudinoidea	ANCESTRAL SPECIES	15	ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672.f #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT01030000235145	ENSGT00390000015123.b	ENSGT01030000234549.a.a.b
Emydidae	ANCESTRAL SPECIES	16	ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672.f #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT00390000015123.b	ENSGT01030000234549.a.a.b	ENSGT00940000156758
Three-toed box turtle	MODERN SPECIES	106	PIGW (ENSTMTG00000022284)	ZNHIT3 (ENSTMTG00000022286) #7	CA4 (ENSTMTG00000022288) #8	ENSTMTG00000022293 #9	CHCT1 (ENSTMTG00000022300) #10	APPBP2 (ENSTMTG00000022301) #11	PPM1D (ENSTMTG00000022307) #12	BCAS3 (ENSTMTG00000022348) #13	TBX2 (ENSTMTG00000022417) #15	TBX4 (ENSTMTG00000022426) #16	BRIP1 (ENSTMTG00000022435) #17	INTS2 (ENSTMTG00000022448) #18	MED13 (ENSTMTG00000022459) #19	RNFT1 (ENSTMTG00000022472) #20	RPS6KB1 (ENSTMTG00000022480) #21	TUBD1 (ENSTMTG00000022485) #22	VMP1 (ENSTMTG00000022492) #23	PTRH2 (ENSTMTG00000022495) #24	CLTC (ENSTMTG00000022497) #25	DHX40 (ENSTMTG00000022505) #26	YPEL2 (ENSTMTG00000022509)	GDPD1 (ENSTMTG00000022511) #28	SMG8 (ENSTMTG00000022515)	SKA2 (ENSTMTG00000022516)	TRIM37 (ENSTMTG00000022526)	PPM1E (ENSTMTG00000022531)	RAD51C (ENSTMTG00000022534)	TEX14 (ENSTMTG00000022538)	ENSTMTG00000022569	DOC2B (ENSTMTG00000022642)	ENSTMTG00000022645
painted turtle	MODERN SPECIES	2371	ZNHIT3 (ENSCPBG00000009540) #7	CA4 (ENSCPBG00000009527) #8	ENSCPBG00000009495 #9	CHCT1 (ENSCPBG00000009476) #10	APPBP2 (ENSCPBG00000009466) #11	PPM1D (ENSCPBG00000009459) #12	BCAS3 (ENSCPBG00000009441) #13	TBX2 (ENSCPBG00000009420) #15	TBX4 (ENSCPBG00000009389) #16	BRIP1 (ENSCPBG00000009376) #17	INTS2 (ENSCPBG00000009362) #18	MED13 (ENSCPBG00000006305) #19	ENSCPBG00000006211	RNFT1 (ENSCPBG00000006206) #20	RPS6KB1 (ENSCPBG00000006195) #21	TUBD1 (ENSCPBG00000006182) #22	VMP1 (ENSCPBG00000006155) #23	PTRH2 (ENSCPBG00000006143) #24	CLTC (ENSCPBG00000006112) #25	DHX40 (ENSCPBG00000006085) #26	YPEL2 (ENSCPBG00000006073)	GDPD1 (ENSCPBG00000006065) #28	SMG8 (ENSCPBG00000006027)	PRR11 (ENSCPBG00000006018)	SKA2 (ENSCPBG00000006002)	TRIM37 (ENSCPBG00000005977)	PPM1E (ENSCPBG00000005961)	RAD51C (ENSCPBG00000005956)	ENSCPBG00000005951
Testudinidae	ANCESTRAL SPECIES	19	ENSGT00940000157382	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672.f #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT01030000235145	ENSGT00390000015123.b	ENSGT01030000234549.a.a.b	ENSGT00940000156758
Abingdon island giant tortoise	MODERN SPECIES	1067													RNFT1 (ENSCABG00000008236) #20	RPS6KB1 (ENSCABG00000008238) #21	ENSCABG00000008239	TUBD1 (ENSCABG00000008240) #22	VMP1 (ENSCABG00000008242) #23	PTRH2 (ENSCABG00000008270) #24	CLTC (ENSCABG00000008271) #25	DHX40 (ENSCABG00000008273) #26	YPEL2 (ENSCABG00000008274)	GDPD1 (ENSCABG00000008276) #28	SMG8 (ENSCABG00000008277)	SKA2 (ENSCABG00000008284)	TRIM37 (ENSCABG00000008303)	PPM1E (ENSCABG00000008483)	RAD51C (ENSCABG00000008491)	ENSCABG00000008493	ENSCABG00000008499
Goode s thornscrub tortoise	MODERN SPECIES	8	MYO19 (ENSGEVG00005012383)	ZNHIT3 (ENSGEVG00005012181) #7	CA4 (ENSGEVG00005012044) #8	ENSGEVG00005011951 #9	CHCT1 (ENSGEVG00005011759) #10	APPBP2 (ENSGEVG00005011694) #11	PPM1D (ENSGEVG00005011628) #12	BCAS3 (ENSGEVG00005011495) #13	TBX2 (ENSGEVG00005011383) #15	TBX4 (ENSGEVG00005011183) #16	BRIP1 (ENSGEVG00005011123) #17	INTS2 (ENSGEVG00005011056) #18	MED13 (ENSGEVG00005010981) #19	RNFT1 (ENSGEVG00005010930) #20	RPS6KB1 (ENSGEVG00005010886) #21	TUBD1 (ENSGEVG00005010820) #22	VMP1 (ENSGEVG00005010758) #23	PTRH2 (ENSGEVG00005010687) #24	CLTC (ENSGEVG00005010475) #25	DHX40 (ENSGEVG00005010398) #26	YPEL2 (ENSGEVG00005010371)	GDPD1 (ENSGEVG00005010342) #28	SMG8 (ENSGEVG00005010055)	SKA2 (ENSGEVG00005009929)	TRIM37 (ENSGEVG00005014950)	PPM1E (ENSGEVG00005014740)	RAD51C (ENSGEVG00005014685)	ENSGEVG00005014659	TEX14 (ENSGEVG00005014509)	ENSGEVG00005014054	ENSGEVG00005013987
Chinese turtle	MODERN SPECIES	2231	ENSPSIG00000010227	ENSPSIG00000000503	CA4 (ENSPSIG00000010244) #8	ENSPSIG00000010750 #9	CHCT1 (ENSPSIG00000013088) #10	APPBP2 (ENSPSIG00000013476) #11	PPM1D (ENSPSIG00000014706) #12	BCAS3 (ENSPSIG00000015694) #13	TBX2 (ENSPSIG00000017536) #15	TBX4 (ENSPSIG00000017594) #16	BRIP1 (ENSPSIG00000018052) #17	INTS2 (ENSPSIG00000018160) #18	MED13 (ENSPSIG00000007296) #19	RNFT1 (ENSPSIG00000007465) #20	RPS6KB1 (ENSPSIG00000007700) #21	TUBD1 (ENSPSIG00000008881) #22	PTRH2 (ENSPSIG00000008890) #24	VMP1 (ENSPSIG00000008902) #23	CLTC (ENSPSIG00000008930) #25	DHX40 (ENSPSIG00000010463) #26	YPEL2 (ENSPSIG00000010847)	GDPD1 (ENSPSIG00000011036) #28	SMG8 (ENSPSIG00000011222)	PRR11 (ENSPSIG00000011251)	SKA2 (ENSPSIG00000012024)	TRIM37 (ENSPSIG00000012035)	PPM1E (ENSPSIG00000013326)	RAD51C (ENSPSIG00000013330)	ENSPSIG00000013479	ENSPSIG00000013496	DOC2B (ENSPSIG00000013784)
Lepidosauria	ANCESTRAL SPECIES	16	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672.e.b #12	ENSGT00940000170057	ENSGT00940000155672.f #12	ENSGT00390000006454 #13	ENSGT00940000169979	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT01030000235145	ENSGT00390000015123.b	ENSGT01030000234549.a.a.b
Episquamata	ANCESTRAL SPECIES	13	ENSGT00670000098452	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672.e.b #12	ENSGT00940000170057	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000164942 #27	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT01030000235145	ENSGT01030000234549.a.a.b
Laterata	ANCESTRAL SPECIES	18	ENSGT00390000010822 #7	ENSGT00670000098452	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672.e.b #12	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000164942 #27	ENSGT00940000156673 #28	ENSGT00390000018533	ENSGT00510000046704.a	ENSGT00390000009588	ENSGT00410000025800	ENSGT00940000157884	ENSGT00940000156805	ENSGT01030000235145	ENSGT01030000234549.a.a.b	ENSGT00940000156758
Common wall lizard	MODERN SPECIES	6	ENSPMRG00000016642 #9	CHCT1 (ENSPMRG00000016628) #10	APPBP2 (ENSPMRG00000016620) #11	PPM1D (ENSPMRG00000016615) #12	ENSPMRG00000016607	BCAS3 (ENSPMRG00000016590) #13	TBX2 (ENSPMRG00000016580) #15	ENSPMRG00000016575	ENSPMRG00000016573	TBX4 (ENSPMRG00000016564) #16	BRIP1 (ENSPMRG00000016277) #17	INTS2 (ENSPMRG00000016101) #18	MED13 (ENSPMRG00000015918) #19	RNFT1 (ENSPMRG00000015833) #20	RPS6KB1 (ENSPMRG00000015545) #21	TUBD1 (ENSPMRG00000015492) #22	VMP1 (ENSPMRG00000015305) #23	PTRH2 (ENSPMRG00000015275) #24	CLTC (ENSPMRG00000014577) #25	DHX40 (ENSPMRG00000014458) #26	ENSPMRG00000014445 #27	ENSPMRG00000014440	GDPD1 (ENSPMRG00000014422) #28	SMG8 (ENSPMRG00000014369)	ENSPMRG00000014349	TRIM37 (ENSPMRG00000013802)	PPM1E (ENSPMRG00000013729)	RAD51C (ENSPMRG00000013714)	ENSPMRG00000023933	ENSPMRG00000023926	DOC2B (ENSPMRG00000023925)
Argentine black and white tegu	MODERN SPECIES	92	MYO19 (ENSSMRG00000014275)	ZNHIT3 (ENSSMRG00000014952) #7	CA4 (ENSSMRG00000014954) #8	ENSSMRG00000014956 #9	CHCT1 (ENSSMRG00000014959) #10	APPBP2 (ENSSMRG00000014962) #11	PPM1D (ENSSMRG00000014964) #12	BCAS3 (ENSSMRG00000014966) #13	TBX2 (ENSSMRG00000014972) #15	TBX4 (ENSSMRG00000014974) #16	BRIP1 (ENSSMRG00000014977) #17	INTS2 (ENSSMRG00000014979) #18	MED13 (ENSSMRG00000014995) #19	RNFT1 (ENSSMRG00000015002) #20	RPS6KB1 (ENSSMRG00000015003) #21	TUBD1 (ENSSMRG00000015005) #22	VMP1 (ENSSMRG00000015006) #23	PTRH2 (ENSSMRG00000015007) #24	CLTC (ENSSMRG00000015009) #25	DHX40 (ENSSMRG00000015016) #26	ENSSMRG00000015017 #27	SMG8 (ENSSMRG00000015018)	PRR11 (ENSSMRG00000015020)	SKA2 (ENSSMRG00000015021)	TRIM37 (ENSSMRG00000015023)	PPM1E (ENSSMRG00000015026)	RAD51C (ENSSMRG00000015027)	ENSSMRG00000015029	ENSSMRG00000015033	DOC2B (ENSSMRG00000015035)	RPH3AL (ENSSMRG00000015053)
Toxicofera	ANCESTRAL SPECIES	23	ENSGT00390000010822 #7	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672.e.b #12	ENSGT00940000170057	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26
Elapidae	ANCESTRAL SPECIES	20	ENSGT00940000156673 #28	ENSGT00940000159010	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672.e.b #12	ENSGT00940000170057	ENSGT00390000006454 #13	ENSGT00940000158439 #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203.d #21	ENSGT00940000154203.c.a #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000155797 #9	ENSGT00940000155690 #8	ENSGT00390000010822 #7	ENSGT00940000157382	ENSGT00390000013520	ENSGT00390000009552	ENSGT00840000129887	ENSGT00390000018761	ENSGT00940000160834	ENSGT00390000000288	ENSGT00940000156706
Indian cobra	DUPLICATION
Indian cobra	DUPLICATION
Indian cobra	MODERN SPECIES		GDPD1 (ENSNNAG00000004897) #28	YPEL2 (ENSNNAG00000004931)	CHCT1 (ENSNNAG00000004952) #10	APPBP2 (ENSNNAG00000004984) #11	BCAS3 (ENSNNAG00000005045) #13	ENSNNAG00000005171 #12	ENSNNAG00000005271 #15	TBX4 (ENSNNAG00000005309) #16	BRIP1 (ENSNNAG00000005386) #17	ENSNNAG00000005435 #17	INTS2 (ENSNNAG00000005521) #18	MED13 (ENSNNAG00000006250) #19	RNFT1 (ENSNNAG00000006565) #20	RPS6KB1 (ENSNNAG00000006596) #21	ENSNNAG00000006740 #22	ENSNNAG00000006793 #22	ENSNNAG00000006826 #22	VMP1 (ENSNNAG00000006864) #23	PTRH2 (ENSNNAG00000006893) #24	CLTC (ENSNNAG00000007102) #25	DHX40 (ENSNNAG00000011222) #26	ENSNNAG00000011640 #9	ENSNNAG00000012165 #8	ZNHIT3 (ENSNNAG00000012191) #7	MYO19 (ENSNNAG00000012312)	ENSNNAG00000013693	GGNBP2 (ENSNNAG00000013709)	DHRS11 (ENSNNAG00000013748)	ENSNNAG00000013770	ENSNNAG00000013778	LHX1 (ENSNNAG00000013795)
Indian cobra	MODERN SPECIES		SMG8 (ENSNNAG00000004880)	GDPD1 (ENSNNAG00000004897) #28	YPEL2 (ENSNNAG00000004931)	CHCT1 (ENSNNAG00000004952) #10	APPBP2 (ENSNNAG00000004984) #11	BCAS3 (ENSNNAG00000005045) #13	ENSNNAG00000005171 #12	ENSNNAG00000005271 #15	TBX4 (ENSNNAG00000005309) #16	BRIP1 (ENSNNAG00000005386) #17	ENSNNAG00000005435 #17	INTS2 (ENSNNAG00000005521) #18	MED13 (ENSNNAG00000006250) #19	RNFT1 (ENSNNAG00000006565) #20	RPS6KB1 (ENSNNAG00000006596) #21	ENSNNAG00000006740 #22	ENSNNAG00000006793 #22	ENSNNAG00000006826 #22	VMP1 (ENSNNAG00000006864) #23	PTRH2 (ENSNNAG00000006893) #24	CLTC (ENSNNAG00000007102) #25	DHX40 (ENSNNAG00000011222) #26	ENSNNAG00000011640 #9	ENSNNAG00000012165 #8	ZNHIT3 (ENSNNAG00000012191) #7	MYO19 (ENSNNAG00000012312)	ENSNNAG00000013693	GGNBP2 (ENSNNAG00000013709)	DHRS11 (ENSNNAG00000013748)	ENSNNAG00000013770	ENSNNAG00000013778
Indian cobra	MODERN SPECIES		AATF (ENSNNAG00000013813)	LHX1 (ENSNNAG00000013795)	ENSNNAG00000013778	ENSNNAG00000013770	DHRS11 (ENSNNAG00000013748)	GGNBP2 (ENSNNAG00000013709)	ENSNNAG00000013693	MYO19 (ENSNNAG00000012312)	ZNHIT3 (ENSNNAG00000012191) #7	ENSNNAG00000012165 #8	ENSNNAG00000011640 #9	DHX40 (ENSNNAG00000011222) #26	CLTC (ENSNNAG00000007102) #25	PTRH2 (ENSNNAG00000006893) #24	VMP1 (ENSNNAG00000006864) #23	ENSNNAG00000006826 #22	ENSNNAG00000006793 #22	ENSNNAG00000006740 #22	RPS6KB1 (ENSNNAG00000006596) #21	RNFT1 (ENSNNAG00000006565) #20	MED13 (ENSNNAG00000006250) #19	INTS2 (ENSNNAG00000005521) #18	ENSNNAG00000005435 #17	BRIP1 (ENSNNAG00000005386) #17	TBX4 (ENSNNAG00000005309) #16	ENSNNAG00000005271 #15	ENSNNAG00000005171 #12	BCAS3 (ENSNNAG00000005045) #13	APPBP2 (ENSNNAG00000004984) #11	CHCT1 (ENSNNAG00000004952) #10	YPEL2 (ENSNNAG00000004931)
Elapidae_a	ANCESTRAL SPECIES	20	ENSGT00390000009588	ENSGT00390000018533	ENSGT00940000156673 #28	ENSGT00940000159010	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672.e.b #12	ENSGT00940000170057	ENSGT00390000006454 #13	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203.d #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000155797 #9	ENSGT00940000155690 #8	ENSGT00390000010822 #7	ENSGT00940000157382	ENSGT00390000013520	ENSGT00390000009552	ENSGT00840000129887	ENSGT00390000018761	ENSGT00940000160834	ENSGT00390000000288	ENSGT00940000156706
Acanthophiinae	ANCESTRAL SPECIES	11	ENSGT00390000009588	ENSGT00390000018533	ENSGT00940000156673 #28	ENSGT00940000159010	ENSGT00390000003769 #10	ENSGT00390000010722 #11	ENSGT00940000155672.e.b #12	ENSGT00940000170057	ENSGT00390000006454 #13	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740.s #20	ENSGT00940000154203.d #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000155797 #9	ENSGT00940000155690 #8	ENSGT00390000010822 #7	ENSGT00940000157382	ENSGT00390000013520	ENSGT00390000009552	ENSGT00840000129887	ENSGT00390000018761	ENSGT00940000160834	ENSGT00390000000288	ENSGT00940000156706	ENSGT00390000001960
Mainland tiger snake	MODERN SPECIES	183										TBX4 (ENSNSUG00000010016) #16	BRIP1 (ENSNSUG00000010014) #17	INTS2 (ENSNSUG00000010006) #18	MED13 (ENSNSUG00000009381) #19	ENSNSUG00000009290 #20	RPS6KB1 (ENSNSUG00000009289) #21	TUBD1 (ENSNSUG00000009288) #22	VMP1 (ENSNSUG00000009286) #23	PTRH2 (ENSNSUG00000009285) #24	CLTC (ENSNSUG00000008087) #25	ENSNSUG00000008076 #9	ENSNSUG00000008015 #8	ZNHIT3 (ENSNSUG00000008012) #7	MYO19 (ENSNSUG00000008010)	PIGW (ENSNSUG00000008008)	GGNBP2 (ENSNSUG00000007930)	DHRS11 (ENSNSUG00000007929)	ENSNSUG00000007928
Eastern brown snake	MODERN SPECIES	46	TRIM37 (ENSPTXG00000009607)	SKA2 (ENSPTXG00000010376)	SMG8 (ENSPTXG00000010377)	GDPD1 (ENSPTXG00000010378) #28	YPEL2 (ENSPTXG00000010379)	CHCT1 (ENSPTXG00000010381) #10	ENSPTXG00000010382	PPM1D (ENSPTXG00000010384) #12	BCAS3 (ENSPTXG00000010385) #13	TBX4 (ENSPTXG00000010388) #16	BRIP1 (ENSPTXG00000010390) #17	ENSPTXG00000010393	MED13 (ENSPTXG00000010395) #19	RNFT1 (ENSPTXG00000010397) #20	RPS6KB1 (ENSPTXG00000010399) #21	TUBD1 (ENSPTXG00000010400) #22	VMP1 (ENSPTXG00000010402) #23	PTRH2 (ENSPTXG00000010403) #24	CLTC (ENSPTXG00000010404) #25	ENSPTXG00000010724	ENSPTXG00000010732 #9	ENSPTXG00000010825 #8	ZNHIT3 (ENSPTXG00000010831) #7	MYO19 (ENSPTXG00000010835)	PIGW (ENSPTXG00000010844)	GGNBP2 (ENSPTXG00000010845)	DHRS11 (ENSPTXG00000010847)	ENSPTXG00000010848	LHX1 (ENSPTXG00000010850)	AATF (ENSPTXG00000010853)	ACACA (ENSPTXG00000010856)
Blue-lipped sea krait	MODERN SPECIES	1867															ENSLLTG00000018279 #21	TUBD1 (ENSLLTG00000018281) #22
Lizard	MODERN SPECIES	1082												ENSACAG00000041227	ENSACAG00000013077 #19	RNFT1 (ENSACAG00000013051) #20	RPS6KB1 (ENSACAG00000012931) #21	TUBD1 (ENSACAG00000012853) #22	PTRH2 (ENSACAG00000012801) #24	CLTC (ENSACAG00000012621) #25	DHX40 (ENSACAG00000012418) #26	ENSACAG00000030329	ALDOC (ENSACAG00000012339)	PIGS (ENSACAG00000012235)	UNC119 (ENSACAG00000039608)	FOXN1 (ENSACAG00000012187)	SLC13A2 (ENSACAG00000012107)	SLC46A1 (ENSACAG00000012091)	ENSACAG00000012024	ENSACAG00000040866	VTN (ENSACAG00000011935)	SEBOX (ENSACAG00000040873)	TMEM199 (ENSACAG00000011872)
tuatara	MODERN SPECIES	967	ENSSPUG00000000186	ZNHIT3 (ENSSPUG00000000180) #7	ENSSPUG00000000044 #9	CHCT1 (ENSSPUG00000016758) #10	APPBP2 (ENSSPUG00000016740) #11	PPM1D (ENSSPUG00000016731) #12	BCAS3 (ENSSPUG00000016715) #13	ENSSPUG00000016697	TBX2 (ENSSPUG00000016686) #15	TBX4 (ENSSPUG00000016677) #16	BRIP1 (ENSSPUG00000016653) #17	INTS2 (ENSSPUG00000016601) #18	MED13 (ENSSPUG00000016568) #19	RNFT1 (ENSSPUG00000016530) #20	RPS6KB1 (ENSSPUG00000016505) #21	TUBD1 (ENSSPUG00000016405) #22	VMP1 (ENSSPUG00000016360) #23	PTRH2 (ENSSPUG00000016349) #24	ENSSPUG00000016343	CLTC (ENSSPUG00000016329) #25	DHX40 (ENSSPUG00000016309) #26	YPEL2 (ENSSPUG00000016304)	GDPD1 (ENSSPUG00000016295) #28	SMG8 (ENSSPUG00000016287)	PRR11 (ENSSPUG00000016253)	SKA2 (ENSSPUG00000016236)	TRIM37 (ENSSPUG00000016219)	PPM1E (ENSSPUG00000016195)	RAD51C (ENSSPUG00000016173)	ENSSPUG00000016160
Anura	ANCESTRAL SPECIES	133	ENSGT00940000157944	ENSGT00940000157588	ENSGT00940000157881	ENSGT00940000155690 #8	ENSGT00940000155797 #9	ENSGT00390000010722 #11	ENSGT00940000155672 #12	ENSGT00390000006454 #13	ENSGT00940000158439.a #15	ENSGT00940000158882 #16	ENSGT00950000182970.A.a #17	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00940000156740 #20	ENSGT00940000154203.a #21	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00940000155272
Frog	MODERN SPECIES	2	ca4.2 (ENSXETG00000013489) #8	ca4.2 (ENSXETG00000034545) #8	usp32 (ENSXETG00000013503) #9	appbp2 (ENSXETG00000013509) #11	ppm1d (ENSXETG00000039122) #12	bcas3 (ENSXETG00000020553) #13	tbx2 (ENSXETG00000020557) #15	tbx4 (ENSXETG00000010718) #16	ENSXETG00000042770	brip1 (ENSXETG00000010720) #17	ints2 (ENSXETG00000010721) #18	med13 (ENSXETG00000010728) #19	rnft1 (ENSXETG00000026210) #20	ENSXETG00000042683	rps6kb1 (ENSXETG00000010731) #21	tubd1 (ENSXETG00000010735) #22	vmp1 (ENSXETG00000010736) #23	ptrh2 (ENSXETG00000043912) #24	cltc (ENSXETG00000010738) #25	ENSXETG00000042881	dhx40 (ENSXETG00000010939) #26	rpl23a (ENSXETG00000026189)	ypel2 (ENSXETG00000040712)	bmp8 (ENSXETG00000010940)	ppie (ENSXETG00000010944)	pabpc4 (ENSXETG00000010946)	ENSXETG00000043250	nt5c1b (ENSXETG00000037368)	hpcal4 (ENSXETG00000036709)	XB5901009 [provisional] (ENSXETG00000010951)	trit1 (ENSXETG00000010952)
Leishan spiny toad	MODERN SPECIES	5	ENSLLEG00000003843	ENSLLEG00000003852	ENSLLEG00000003858 #17	INTS2 (ENSLLEG00000003876) #18	MED13 (ENSLLEG00000003916) #19	ENSLLEG00000003944	ENSLLEG00000003950	ENSLLEG00000003957	ENSLLEG00000003960	ENSLLEG00000003964	ENSLLEG00000003967	ENSLLEG00000003975	RNFT1 (ENSLLEG00000003990) #20	ENSLLEG00000004007	ENSLLEG00000004029 #21	TUBD1 (ENSLLEG00000004058) #22	ENSLLEG00000004070	ENSLLEG00000004072	ENSLLEG00000004079	ENSLLEG00000004090	ENSLLEG00000004098	ENSLLEG00000004100	ENSLLEG00000004105 #27	ENSLLEG00000004110	DHX40 (ENSLLEG00000005122) #26	CLTC (ENSLLEG00000005307) #25	PTRH2 (ENSLLEG00000006189) #24	ENSLLEG00000006240	ENSLLEG00000006270	PABPC4 (ENSLLEG00000006479)	NT5C1A (ENSLLEG00000007297)
Coelacanth	MODERN SPECIES	228	ZNHIT3 (ENSLACG00000017408) #7	ENSLACG00000017393	CA4 (ENSLACG00000017298) #8	ENSLACG00000016966 #9	APPBP2 (ENSLACG00000016848) #11	PPM1D (ENSLACG00000016794) #12	BCAS3 (ENSLACG00000016293) #13	TBX2 (ENSLACG00000015364) #15	TBX4 (ENSLACG00000014713) #16	BRIP1 (ENSLACG00000013747) #17	INTS2 (ENSLACG00000013445) #18	MED13 (ENSLACG00000012774) #19	ENSLACG00000012334	RNFT1 (ENSLACG00000012165) #20	rps6kb1b (ENSLACG00000011872)	TUBD1 (ENSLACG00000011751) #22	VMP1 (ENSLACG00000010438) #23	PTRH2 (ENSLACG00000010258) #24	CLTC (ENSLACG00000009711) #25	DHX40 (ENSLACG00000008892) #26	YPEL2 (ENSLACG00000007336)	GDPD1 (ENSLACG00000006722) #28	SMG8 (ENSLACG00000006505)	PRR11 (ENSLACG00000006191)	ska2 (ENSLACG00000005730)	TRIM37 (ENSLACG00000004789)	PPM1E (ENSLACG00000004046)	RAD51C (ENSLACG00000000179)
Actinopterygii	ANCESTRAL SPECIES	75	ENSGT00940000153592.B.a	ENSGT00390000016067	ENSGT00990000205129	ENSGT00940000153491.b.b.a	ENSGT00390000001189.a	ENSGT00390000018151	ENSGT00990000203589.a.a	ENSGT00390000015077	ENSGT00940000161188	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00740000117073	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000155062.b	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.a #25	ENSGT00940000158902 #26	ENSGT00390000009061	ENSGT00390000017214	ENSGT00940000176149	ENSGT00940000154823	ENSGT00940000156014	ENSGT00940000165416
Neopterygii	ANCESTRAL SPECIES	76	ENSGT00940000153592.B.a	ENSGT00390000016067	ENSGT00990000205129	ENSGT00940000153491.b.b.a	ENSGT00390000001189.a	ENSGT00390000018151	ENSGT00990000203589.a.a	ENSGT00940000161188	ENSGT00390000015077	ENSGT00390000011888 #18	ENSGT00390000013680.b #19	ENSGT00740000117073	ENSGT00940000156740 #20	ENSGT00940000154203 #21	ENSGT00940000155062.b	ENSGT00940000157069 #22	ENSGT00390000007230 #23	ENSGT00390000015991 #24	ENSGT00950000183166.a.a.a.b ##25	ENSGT00940000157820.a.b	ENSGT00900000141103	ENSGT00440000033965	ENSGT00940000155559.b	ENSGT00390000012785	ENSGT00390000018199.b	ENSGT00390000014001	ENSGT00940000157837
Osteoglossocephalai	ANCESTRAL SPECIES	307											ENSGT00530000063516.a.a.a.b	ENSGT00530000063947.C.c	ENSGT00940000155062.b	ENSGT00390000013680.b.b #19	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00950000183166.a.a.a.b.e.a ##25	ENSGT00940000158902 #26	ENSGT00730000113168	ENSGT00940000161532.a	ENSGT00940000161532.b	ENSGT01020000230351.E.c
Clupeocephala	ANCESTRAL SPECIES	162	ENSGT00940000157231.a.b	ENSGT00940000155457.a.b	ENSGT01050000244814.a.a.b.b.b.b.a	ENSGT00950000183206.a.b.a.a.a	ENSGT00940000164443.b.b	ENSGT00940000166822	ENSGT00950000183068.a.b.d	ENSGT00940000156527.d	ENSGT00940000164443.a.a.b	ENSGT00940000156881.g	ENSGT00940000157408.a.b	ENSGT00530000063516.a.a.a.b	ENSGT00530000063947.C.c	ENSGT00870000136508.c.b	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00950000183166.a.a.a.b.e.a ##25	ENSGT00940000158902 #26	ENSGT00940000163253.a.b	ENSGT00730000113168	ENSGT00940000161532.a	ENSGT00940000161532.b	ENSGT01020000230351.E.c	ENSGT00530000063811.A.a.b	ENSGT00560000077232.B.g.a	ENSGT00940000156014	ENSGT00940000165416
Otomorpha	ANCESTRAL SPECIES	2														ENSGT00390000013680.b.b #19	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00950000183166.a.a.a.b.e.a ##25	ENSGT00940000158902 #26	ENSGT00940000163253.a.b	ENSGT00730000113168	ENSGT00940000161532.a	ENSGT00940000161532.b	ENSGT00940000156648.e	ENSGT00390000017359	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00940000153594.d	ENSGT00940000159010	ENSGT00940000156673 #28	ENSGT00390000007848.a.c
Clupeiformes	ANCESTRAL SPECIES	59																ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00530000063405.b.e	ENSGT00940000161289	ENSGT01010000222313.A.b.b.b.b	ENSGT00390000012296	ENSGT00940000165285	ENSGT00940000154495.a.a	ENSGT00920000149180.b.g	ENSGT00390000014591	ENSGT00940000153571.a	ENSGT00940000161370	ENSGT00820000127055.a.a	ENSGT00940000162662	ENSGT00940000160033.c	ENSGT00390000012368
Denticle herring	MODERN SPECIES	10	MFSD1 (ENSDCDG00000023151)	schip1 (ENSDCDG00000023159)	ENSDCDG00000023166	ENSDCDG00000023168	ift80 (ENSDCDG00000023177)	smc4 (ENSDCDG00000023798)	ENSDCDG00000024973	kpna4 (ENSDCDG00000025038)	ppm1lb (ENSDCDG00000027339)	nmd3 (ENSDCDG00000027340)	sptssb (ENSDCDG00000027343)	otol1b (ENSDCDG00000027344)	ENSDCDG00000027347	cltcb (ENSDCDG00000027359) ##25	DHX40 (ENSDCDG00000027402) #26	tubd1 (ENSDCDG00000027417) #22	vmp1 (ENSDCDG00000027419) #23	tbcela (ENSDCDG00000027454)	usp2a (ENSDCDG00000027462)	dhrs13b.2 (ENSDCDG00000027527)	smtnl (ENSDCDG00000027528)	tmem199 (ENSDCDG00000027530)	poldip2 (ENSDCDG00000027539)	LRRC75A (ENSDCDG00000027781)	crk (ENSDCDG00000027784)	itpkcb (ENSDCDG00000027789)	zgc:153119 (ENSDCDG00000027799)	snrpa (ENSDCDG00000027805)	ENSDCDG00000027809	capn5a (ENSDCDG00000027848)	ompa (ENSDCDG00000028404)
Atlantic herring	MODERN SPECIES	25	GALNT17 (ENSCHAG00000001009)	CALN1 (ENSCHAG00000001099)	tyw1 (ENSCHAG00000001230)	tmem120ab (ENSCHAG00000001584)	gdpd1 (ENSCHAG00000001715) #28	hip1 (ENSCHAG00000002295)	clptm1 (ENSCHAG00000003757)	RELB (ENSCHAG00000004985)	mrpl28 (ENSCHAG00000005080)	cul5a (ENSCHAG00000005113)	ENSCHAG00000006073	ENSCHAG00000006128	ENSCHAG00000006146	DHX40 (ENSCHAG00000006177) #26	cltcb (ENSCHAG00000007042) ##25	tubd1 (ENSCHAG00000007337) #22	vmp1 (ENSCHAG00000007359) #23	tbcela (ENSCHAG00000007619)	usp2a (ENSCHAG00000007647)	dhrs13b.2 (ENSCHAG00000007963)	TLCD3A (ENSCHAG00000008060)	gemin4 (ENSCHAG00000008077)	smtnl (ENSCHAG00000008089)	ENSCHAG00000008158	tmem199 (ENSCHAG00000008175)	poldip2 (ENSCHAG00000008195)	LRRC75A (ENSCHAG00000008495)	crk (ENSCHAG00000008508)	ENSCHAG00000008527	ENSCHAG00000008594	ENSCHAG00000008616
Otophysi	ANCESTRAL SPECIES	53	ENSGT00950000182903.b.b.o.a	ENSGT00940000157434.c	ENSGT00390000017207.i.a	ENSGT00940000155231.a.a	ENSGT00940000162996	ENSGT00940000154904	ENSGT00530000063801.b.g	ENSGT00940000153695.A	ENSGT00940000168466	ENSGT00940000177557	ENSGT00940000167856.b	ENSGT00940000159642.f.a	ENSGT00940000155801.c	ENSGT00950000182856.b.c	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00950000183166.a.a.a.b.e.a ##25	ENSGT00940000158902 #26	ENSGT00940000161324	ENSGT00730000113168	ENSGT00940000161532.a	ENSGT00940000161532.b	ENSGT00940000156648.e	ENSGT00390000017359	ENSGT00940000160230	ENSGT00940000160233	ENSGT00530000063461.B	ENSGT00940000153594.d	ENSGT00940000159010.g.b	ENSGT00940000156673 #28
Cyprinoidei	ANCESTRAL SPECIES	4	ENSGT00510000048581	ENSGT00950000182903.b.b.o.a.a	ENSGT00940000157434.c	ENSGT00390000017207.i.a	ENSGT00940000155231.a.a	ENSGT00940000154904	ENSGT00530000063801.b.g	ENSGT00940000153695.A	ENSGT00940000168466	ENSGT00940000177557	ENSGT00940000167856.b	ENSGT00940000159642.f.a	ENSGT00940000155801.c	ENSGT00950000182856.b.c	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00950000183166.a.a.a.b.e.a ##25	ENSGT00940000158902 #26	ENSGT00730000113168	ENSGT00940000161532.a	ENSGT00940000161532.b	ENSGT00940000156648.e	ENSGT00390000017359	ENSGT00940000160230	ENSGT00940000160233	ENSGT00530000063461.B	ENSGT01030000234974	ENSGT00950000182920.b.a.b.a.a	ENSGT00940000153594.d	ENSGT00940000159010.g.b
Cyprininae	ANCESTRAL SPECIES	92	ENSGT00940000159163.n	ENSGT00510000048581.a	ENSGT00950000182903.b.b.o.a.a.b	ENSGT00940000157434.c.a.b	ENSGT00390000017207.i.a.a	ENSGT00940000155231.a.a.n	ENSGT00940000154904.k.a.a.b	ENSGT00530000063801.b.g.a	ENSGT00940000153695.A.d	ENSGT00940000168466.a.a	ENSGT00940000167856.b.f	ENSGT00940000159642.f.a.j	ENSGT00940000155801.c.a	ENSGT00950000182856.b.c.c	ENSGT00940000155062.b.d.a.a	ENSGT00940000157069 #22	ENSGT00390000007230.b.b #23	ENSGT00950000183166.a.a.a.b.e.a.e ##25	ENSGT00940000158902 #26	ENSGT00940000161532.a.a	ENSGT00940000161532.a.b	ENSGT00940000156648.e.a	ENSGT00390000017359.e	ENSGT00940000160230.j	ENSGT00530000063461.B.d	ENSGT01030000234974.b	ENSGT00950000182920.b.a.b.a.a.c.b	ENSGT00940000153594.d.d	ENSGT00940000159010.g.b	ENSGT00940000156673.j #28	ENSGT00510000047059.d
Cyprininae_a	ANCESTRAL SPECIES	116	ENSGT00510000048581.a	ENSGT00950000182903.b.b.o.a.a.b	ENSGT00940000157434.c.a.b	ENSGT00390000017207.i.a.a	ENSGT00940000155231.a.a.n	ENSGT00940000162996.j	ENSGT00940000154904.k.a.a.b	ENSGT00530000063801.b.g.a	ENSGT00940000153695.A.d	ENSGT00940000168466.a.a	ENSGT00940000167856.b.f	ENSGT00940000159642.f.a.j	ENSGT00940000155801.c.a	ENSGT00950000182856.b.c.c	ENSGT00940000155062.b.d.a.a	ENSGT00940000157069 #22	ENSGT00390000007230.b.b #23	ENSGT00950000183166.a.a.a.b.e.a.e ##25	ENSGT00940000158902 #26	ENSGT00940000161532.a.a	ENSGT00940000161532.a.b	ENSGT00940000156648.e.a	ENSGT00390000017359.e	ENSGT00940000160230.j	ENSGT00530000063461.B.d	ENSGT01030000234974.b	ENSGT00950000182920.b.a.b.a.a.c.b	ENSGT00940000153594.d.d	ENSGT00940000159010.g.b.b	ENSGT00940000156673.j #28	ENSGT00510000047059.d
Common carp reference	MODERN SPECIES	39	pih1d2 (ENSCCRG00000007006)	dixdc1a (ENSCCRG00000007008)	cryaba (ENSCCRG00000042526)	arcn1b (ENSCCRG00000007010)	ENSCCRG00000042379	ENSCCRG00000007456	ENSCCRG00000007510	zgc:113279 (ENSCCRG00000007467)	ENSCCRG00000055079	ENSCCRG00000064916	ENSCCRG00000082012	ENSCCRG00000070847	ENSCCRG00000027505	ENSCCRG00000007963	rps6kb1b (ENSCCRG00000046967)	tubd1 (ENSCCRG00000046954) #22	vmp1 (ENSCCRG00000056267) #23	cltcb (ENSCCRG00000045130) ##25	DHX40 (ENSCCRG00000045045) #26	ENSCCRG00000044853	ENSCCRG00000040769	cul5a (ENSCCRG00000055967)	mrpl28 (ENSCCRG00000045526)	ENSCCRG00000016319	clptm1 (ENSCCRG00000016330)	lgals17 (ENSCCRG00000066698)	plin2 (ENSCCRG00000047866)	hip1 (ENSCCRG00000004949)	ENSCCRG00000081908	gdpd1 (ENSCCRG00000006979) #28	ENSCCRG00000055636
Goldfish	MODERN SPECIES	34	ENSCARG00000008171	TMPRSS5 (ENSCARG00000008161)	dixdc1a (ENSCARG00000008136)	cryaba (ENSCARG00000008127)	arcn1b (ENSCARG00000008069)	PHLDB1 (ENSCARG00000006617)	ENSCARG00000006121	ENSCARG00000006073	zgc:113279 (ENSCARG00000006060)	ENSCARG00000020078	ENSCARG00000020056	ADAMTS8 (ENSCARG00000020026)	ENSCARG00000019995	SNX19 (ENSCARG00000019984)	rps6kb1b (ENSCARG00000019854)	tubd1 (ENSCARG00000019823) #22	vmp1 (ENSCARG00000019606) #23	cltcb (ENSCARG00000018739) ##25	ENSCARG00000018692	DHX40 (ENSCARG00000018540) #26	ENSCARG00000018506	ENSCARG00000018477	cul5a (ENSCARG00000018298)	mrpl28 (ENSCARG00000018286)	ENSCARG00000018281	clptm1 (ENSCARG00000018186)	lgals17 (ENSCARG00000018173)	plin2 (ENSCARG00000018167)	hip1 (ENSCARG00000017186)	ENSCARG00000017115	gdpd1 (ENSCARG00000017072) #28
Zebrafish	MODERN SPECIES	6	pih1d2 (ENSDARG00000014849)	ENSDARG00000108432	dixdc1a (ENSDARG00000025302)	cryaba (ENSDARG00000042621)	arcn1b (ENSDARG00000031214)	PHLDB1 (ENSDARG00000079378)	ENSDARG00000077785	zgc:113279 (ENSDARG00000099533)	ENSDARG00000104312	ENSDARG00000097483	ENSDARG00000058254	ADAMTS8 (ENSDARG00000058252)	ENSDARG00000033544	SNX19 (ENSDARG00000079931)	rps6kb1b (ENSDARG00000058230)	tubd1 (ENSDARG00000058219) #22	vmp1 (ENSDARG00000012450) #23	cltcb (ENSDARG00000090716) ##25	DHX40 (ENSDARG00000041586) #26	ENSDARG00000097065	ENSDARG00000098012	ENSDARG00000057787	cul5a (ENSDARG00000069742)	mrpl28 (ENSDARG00000057805)	ENSDARG00000086173	mos (ENSDARG00000069744)	clptm1 (ENSDARG00000018973)	lgals17 (ENSDARG00000088251)	plin2 (ENSDARG00000042332)	hip1 (ENSDARG00000062972)	YPEL2 (ENSDARG00000087258)
Characiphysae	ANCESTRAL SPECIES	22	ENSGT00530000063947.C.c	ENSGT00870000136508.c.b	ENSGT00940000154823	ENSGT00390000013680.b.b #19	ENSGT00390000014712.a.a	ENSGT00940000155231.a.a	ENSGT00530000063801.b.g	ENSGT00940000153695.A	ENSGT00940000168466	ENSGT00940000177557	ENSGT00940000167856.b	ENSGT00940000159642.f.a	ENSGT00940000155801.c	ENSGT00950000182856.b.c	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00950000183166.a.a.a.b.e.a ##25	ENSGT00940000158902 #26	ENSGT00940000161532.b	ENSGT00940000156648.e	ENSGT00390000017359	ENSGT00940000160230	ENSGT00940000160233	ENSGT00530000063461.B	ENSGT00940000153594.d	ENSGT00940000159010.g.b	ENSGT00940000156673 #28	ENSGT00390000007848.a.c	ENSGT00510000047059	ENSGT00940000159212.a
Channel catfish	MODERN SPECIES	8	AUTS2 (ENSIPUG00000014760)	med13 (ENSIPUG00000014773) #19	ENSIPUG00000014891	ENSIPUG00000014902	ENSIPUG00000014911	PHLDB1 (ENSIPUG00000014949)	ENSIPUG00000015135	zgc:113279 (ENSIPUG00000015147)	pou2af1 (ENSIPUG00000015171)	ENSIPUG00000015199	ENSIPUG00000015217	ADAMTS8 (ENSIPUG00000015232)	ENSIPUG00000015253	snx19 (ENSIPUG00000015323)	rps6kb1 (ENSIPUG00000015350)	tubd1 (ENSIPUG00000015416) #22	vmp1 (ENSIPUG00000015448) #23	cltc (ENSIPUG00000015496) ##25	dhx40 (ENSIPUG00000015673) #26	ENSIPUG00000015743	tuba1a (ENSIPUG00000015759)	ENSIPUG00000015761	cul5 (ENSIPUG00000015796)	mrpl28 (ENSIPUG00000015984)	relb (ENSIPUG00000016024)	mos (ENSIPUG00000016091)	clptm1 (ENSIPUG00000016096)	hip1 (ENSIPUG00000016140)	ENSIPUG00000016220	gdpd1 (ENSIPUG00000016248) #28	tmem120ab (ENSIPUG00000016286)
Characiphysae_b	ANCESTRAL SPECIES	14	ENSGT00530000063947.C.c	ENSGT00870000136508.c.b	ENSGT00940000154823	ENSGT00390000013680.b.b #19	ENSGT00390000014712.a.a	ENSGT00940000155231.a.a	ENSGT00530000063801.b.g	ENSGT00940000153695.A	ENSGT00940000168466	ENSGT00940000177557	ENSGT00940000167856.b	ENSGT00940000159642.f.a	ENSGT00940000155801.c	ENSGT00950000182856.b.c	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00950000183166.a.a.a.b.e.a ##25	ENSGT00940000158902 #26	ENSGT00940000161532.b	ENSGT00940000156648.e	ENSGT00390000017359	ENSGT00940000160230	ENSGT00940000160233	ENSGT00530000063461.B	ENSGT00940000153594.d	ENSGT00940000159010.g.b	ENSGT00940000156673 #28	ENSGT00390000007848.a.c	ENSGT00510000047059	ENSGT00940000159212.a
Characoidei	ANCESTRAL SPECIES	12	ENSGT00530000063947.C.c	ENSGT00870000136508.c.b	ENSGT00940000154823	ENSGT00390000013680.b.b #19	ENSGT00390000014712.a.a	ENSGT00940000155231.a.a	ENSGT00530000063801.b.g	ENSGT00940000153695.A	ENSGT00940000168466	ENSGT00940000177557	ENSGT00940000167856.b	ENSGT00940000159642.f.a	ENSGT00940000155801.c	ENSGT00950000182856.b.c	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00950000183166.a.a.a.b.e.a ##25	ENSGT00940000158902 #26	ENSGT00940000161532.b	ENSGT00940000156648.e	ENSGT00390000017359	ENSGT00940000160230	ENSGT00940000160233	ENSGT00530000063461.B	ENSGT00940000153594.d	ENSGT00940000159010.g.b	ENSGT00940000156673 #28	ENSGT00390000007848.a.c	ENSGT00510000047059	ENSGT00940000159212.a
Red-bellied piranha	MODERN SPECIES	546										ENSPNAG00000025372	ENSPNAG00000025353	ADAMTS8 (ENSPNAG00000005196)	ENSPNAG00000025324	SNX19 (ENSPNAG00000025317)	rps6kb1b (ENSPNAG00000003900)	tubd1 (ENSPNAG00000025143) #22	vmp1 (ENSPNAG00000025107) #23	cltcb (ENSPNAG00000006697) ##25	DHX40 (ENSPNAG00000024815) #26	ENSPNAG00000024767	ENSPNAG00000024754	cul5a (ENSPNAG00000024709)
Mexicana tetra	MODERN SPECIES	11	zgc:112083 (ENSAMXG00000002891)	ENSAMXG00000040896	med13b (ENSAMXG00000002817) #19	ENSAMXG00000002789	PHLDB1 (ENSAMXG00000002751)	ENSAMXG00000002726	zgc:113279 (ENSAMXG00000002706)	ENSAMXG00000036212	ENSAMXG00000042879	ENSAMXG00000030782	ENSAMXG00000035465	ADAMTS8 (ENSAMXG00000037225)	ENSAMXG00000029165	SNX19 (ENSAMXG00000002051)	rps6kb1b (ENSAMXG00000002047)	tubd1 (ENSAMXG00000037376) #22	vmp1 (ENSAMXG00000034404) #23	ENSAMXG00000044057	cltcb (ENSAMXG00000002036) ##25	DHX40 (ENSAMXG00000002031) #26	ENSAMXG00000002027	cul5a (ENSAMXG00000035613)	mrpl28 (ENSAMXG00000001999)	ENSAMXG00000040998	mos (ENSAMXG00000001991)	ENSAMXG00000036256	TIAM1 (ENSAMXG00000001973)	ENSAMXG00000034907	ENSAMXG00000041073	zgc:172282 (ENSAMXG00000009318)	ENSAMXG00000043185
Electric eel	MODERN SPECIES	384	thap12b (ENSEEEG00000004277)	ENSEEEG00000004276	zgc:112083 (ENSEEEG00000004274)	ENSEEEG00000004270	med13b (ENSEEEG00000003746) #19	ENSEEEG00000003686	PHLDB1 (ENSEEEG00000003684)	ENSEEEG00000003678	zgc:113279 (ENSEEEG00000003675)	ENSEEEG00000003672	ENSEEEG00000003670	ADAMTS8 (ENSEEEG00000003650)	ENSEEEG00000003584	SNX19 (ENSEEEG00000003574)	rps6kb1b (ENSEEEG00000003363)	tubd1 (ENSEEEG00000003361) #22	vmp1 (ENSEEEG00000003353) #23	cltcb (ENSEEEG00000001965) ##25	DHX40 (ENSEEEG00000001927) #26	ENSEEEG00000001923	cul5a (ENSEEEG00000001913)
Euteleosteomorpha	ANCESTRAL SPECIES	7	ENSGT01050000244814.a.a.b.b.b.b.a	ENSGT00950000183206.a.b.a.a.a	ENSGT00940000164443.b.b	ENSGT00940000166822	ENSGT00950000183068.a.b.d	ENSGT00940000156527.d	ENSGT00940000164443.a.a.b	ENSGT00940000156881.g	ENSGT00940000157408.a.b	ENSGT00530000063516.a.a.a.b	ENSGT00530000063947.C.c	ENSGT00870000136508.c.b	ENSGT00390000013680.b.b #19	ENSGT00940000154203 #21	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00560000077266.b	ENSGT00940000165905	ENSGT00980000198612	ENSGT00390000008610.a.b.a.a.b	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B
Acanthomorphata	ANCESTRAL SPECIES	37	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00940000178902	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT01030000235461	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.e.b	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00560000077266.b	ENSGT00940000165905	ENSGT00980000198612	ENSGT00390000008610.a.b.a.a.b	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B
Euacanthomorphacea	ANCESTRAL SPECIES	8	ENSGT00940000163939	ENSGT00940000178902	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT01030000235461	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.e.b	ENSGT00940000156760.f	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT00940000165615.a	ENSGT00940000178743	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00560000077266.b	ENSGT00940000165905	ENSGT00980000198612	ENSGT00390000008610.a.b.a.a.b
Percomorphaceae	ANCESTRAL SPECIES	8	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT01030000235461	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.e.b	ENSGT00940000156760.f	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00560000077266.b	ENSGT00940000165905	ENSGT00980000198612	ENSGT00390000008610.a.b.a.a.b	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B
Percomorphaceae_B	ANCESTRAL SPECIES	13	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT01030000235461	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.e.b	ENSGT00940000156760.f	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00940000172904	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00560000077266.b	ENSGT00940000165905	ENSGT00980000198612	ENSGT00940000156017.fb	ENSGT00390000008610.a.b.a.a.b
Ovalentaria	ANCESTRAL SPECIES	8	ENSGT00940000164637	ENSGT00940000163939	ENSGT00940000178902	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000159135	ENSGT01030000235461	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.e.b	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00940000172904	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00560000077266.b	ENSGT00390000008610.a.b.a.a.b	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B	ENSGT00940000153259.a.a.b
Ovalentaria_B	ANCESTRAL SPECIES	11	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00940000178902	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.f	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00940000172904	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00560000077266.b	ENSGT00390000008610.a.b.a.a.b	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B	ENSGT00940000153259.a.a.b
Pomacentridae	ANCESTRAL SPECIES	5	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00940000178902	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.f	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00940000156017.fb	ENSGT00560000077266.b	ENSGT00390000008610.a.b.a.a.b	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B	ENSGT00940000153259.a.a.b
Pomacentridae_A	ANCESTRAL SPECIES	4	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00940000178902	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.f	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00940000156017.fb	ENSGT00560000077266.b	ENSGT00390000008610.a.b.a.a.b	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B	ENSGT00940000153259.a.a.b
Amphiprion	ANCESTRAL SPECIES	6	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00940000178902	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.f	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00940000156017.fb	ENSGT00560000077266.b	ENSGT00390000008610.a.b.a.a.b	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B	ENSGT00940000153259.a.a.b
Orange clownfish	MODERN SPECIES	23	serpini1 (ENSAPEG00000019861)	ENSAPEG00000019874	ENSAPEG00000019910	ENSAPEG00000019942	veph1 (ENSAPEG00000019966)	PTX3 (ENSAPEG00000020003)	ccnl1a (ENSAPEG00000020021)	ENSAPEG00000020089	TIPARP (ENSAPEG00000020094)	ssr3 (ENSAPEG00000020109)	kcnab1a (ENSAPEG00000020132)	ENSAPEG00000020169	gmps (ENSAPEG00000020189)	slc33a1 (ENSAPEG00000020265)	rps6kb1b (ENSAPEG00000020308)	tubd1 (ENSAPEG00000020380) #22	vmp1 (ENSAPEG00000020424) #23	ENSAPEG00000020478	ATM (ENSAPEG00000020503)	ENSAPEG00000020652	bace2 (ENSAPEG00000020666)	DSCAM (ENSAPEG00000020708)	PCP4 (ENSAPEG00000020783)	ENSAPEG00000020792	sh3bgr (ENSAPEG00000020837)	GET1 (ENSAPEG00000020919)	BRWD1 (ENSAPEG00000020945)	MIPEP (ENSAPEG00000021052)	tnfrsf19 (ENSAPEG00000021145)	SACS (ENSAPEG00000021169)	sgcg (ENSAPEG00000021190)
Clown anemonefish	MODERN SPECIES	3409						ccnl1a (ENSAOCG00000003345)	ENSAOCG00000002693	ENSAOCG00000003337	TIPARP (ENSAOCG00000003328)	ssr3 (ENSAOCG00000003325)	kcnab1a (ENSAOCG00000003317)	ENSAOCG00000003302	gmps (ENSAOCG00000003292)	slc33a1 (ENSAOCG00000003278)	rps6kb1b (ENSAOCG00000003270)	tubd1 (ENSAOCG00000003256) #22	vmp1 (ENSAOCG00000003247) #23	ENSAOCG00000003237	ATM (ENSAOCG00000003225)	ENSAOCG00000003194	bace2 (ENSAOCG00000003180)	DSCAM (ENSAOCG00000003164)	PCP4 (ENSAOCG00000003144)	ENSAOCG00000003134	SH3BGRL (ENSAOCG00000000079)	ENSAOCG00000003106	GET1 (ENSAOCG00000024215)	BRWD1 (ENSAOCG00000024196)	MIPEP (ENSAOCG00000024152)	tnfrsf19 (ENSAOCG00000024121)	SACS (ENSAOCG00000024107)
Spiny chromis	MODERN SPECIES	284														slc33a1 (ENSAPOG00000014524)	rps6kb1b (ENSAPOG00000014469)	tubd1 (ENSAPOG00000014374) #22	vmp1 (ENSAPOG00000014312) #23	ENSAPOG00000014237	ATM (ENSAPOG00000014196)	TMPRSS2 (ENSAPOG00000013509)	bace2 (ENSAPOG00000013476)	DSCAM (ENSAPOG00000013397)	PCP4 (ENSAPOG00000013232)	sh3bgr (ENSAPOG00000013215)	GET1 (ENSAPOG00000013162)	ENSAPOG00000013130	MIPEP (ENSAPOG00000013090)	tnfrsf19 (ENSAPOG00000012968)	SACS (ENSAPOG00000012936)	sgcg (ENSAPOG00000012872)
Bicolor damselfish	MODERN SPECIES	298							ccnl1a (ENSSPAG00000017459)	ENSSPAG00000017439	TIPARP (ENSSPAG00000017423)	ssr3 (ENSSPAG00000017403)	kcnab1a (ENSSPAG00000017381)	ENSSPAG00000017345	gmps (ENSSPAG00000017294)	slc33a1 (ENSSPAG00000017251)	rps6kb1b (ENSSPAG00000017178)	tubd1 (ENSSPAG00000017131) #22	vmp1 (ENSSPAG00000017088) #23	ENSSPAG00000017062	ATM (ENSSPAG00000016715)	ENSSPAG00000016672	bace2 (ENSSPAG00000016639)	DSCAM (ENSSPAG00000016558)	PCP4 (ENSSPAG00000016538)	ENSSPAG00000016519	SH3BGRL (ENSSPAG00000016427)	get1 (ENSSPAG00000016386)	ENSSPAG00000016375	ENSSPAG00000016327	MIPEP (ENSSPAG00000016280)	tnfrsf19 (ENSSPAG00000016259)	SACS (ENSSPAG00000016240)
Cichlidae	ANCESTRAL SPECIES	25	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.f	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00940000172904	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT01030000235087	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00560000077266.b	ENSGT00390000008610.a.b.a.a.b	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B	ENSGT00940000153259.a.a.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	22	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.f	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00940000172904	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT01030000235087	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00560000077266.b	ENSGT00390000008610.a.b.a.a.b	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B	ENSGT00940000153259.a.a.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	25	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.f	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00940000172904	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT01030000236803	ENSGT00940000159847	ENSGT00560000077266.b	ENSGT00390000008610.a.b.a.a.b	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B	ENSGT00940000153259.a.a.b	ENSGT00390000016695
Haplochromini	ANCESTRAL SPECIES	33	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.f	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00940000172904	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT01030000236803	ENSGT00940000159847	ENSGT00560000077266.b	ENSGT00390000008610.a.b.a.a.b	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B	ENSGT00940000153259.a.a.b	ENSGT00390000016695
Burton s mouthbrooder	MODERN SPECIES	304	serpini1 (ENSHBUG00000005921)	ENSHBUG00000005934	ENSHBUG00000005939	ENSHBUG00000005954	PTX3 (ENSHBUG00000005964)	veph1 (ENSHBUG00000005977)	ccnl1a (ENSHBUG00000006011)	ENSHBUG00000006024	TIPARP (ENSHBUG00000001162)	ssr3 (ENSHBUG00000006051)	kcnab1a (ENSHBUG00000006103)	ENSHBUG00000006145	gmps (ENSHBUG00000000946)	slc33a1 (ENSHBUG00000006210)	rps6kb1b (ENSHBUG00000006264)	tubd1 (ENSHBUG00000006291) #22	vmp1 (ENSHBUG00000006342) #23	ENSHBUG00000006378	ENSHBUG00000006402	ENSHBUG00000006418	ENSHBUG00000006425	ENSHBUG00000006435
Haplochromini_A	ANCESTRAL SPECIES	20	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368.bb	ENSGT00390000000970	ENSGT00940000156760.f	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00940000172904	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT01030000236803	ENSGT00940000159847	ENSGT00940000156017.fb	ENSGT00560000077266.b	ENSGT00390000008610.a.b.a.a.b	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B	ENSGT00940000153259.a.a.b
P. nyererei	MODERN SPECIES	298	ENSPNYG00000010480	ENSPNYG00000010502	ENSPNYG00000010528	veph1 (ENSPNYG00000010566)	PTX3 (ENSPNYG00000010607)	ccnl1a (ENSPNYG00000010611)	ENSPNYG00000010684	TIPARP (ENSPNYG00000010697)	ssr3 (ENSPNYG00000010708)	kcnab1a (ENSPNYG00000010724)	ENSPNYG00000010752	gmps (ENSPNYG00000010788)	slc33a1 (ENSPNYG00000010862)	rps6kb1b (ENSPNYG00000010910)	ENSPNYG00000010930	tubd1 (ENSPNYG00000010942) #22	vmp1 (ENSPNYG00000010976) #23	ENSPNYG00000011010	ENSPNYG00000011035	ATM (ENSPNYG00000011075)	bace2 (ENSPNYG00000011236)	DSCAM (ENSPNYG00000011266)	ENSPNYG00000011328	sh3bgr (ENSPNYG00000011342)	GET1 (ENSPNYG00000011363)	BRWD1 (ENSPNYG00000011393)	MIPEP (ENSPNYG00000011479)	TNFRSF19 (ENSPNYG00000011535)	SACS (ENSPNYG00000011559)	sgcg (ENSPNYG00000011599)	rps25 (ENSPNYG00000011614)
Haplochromini_B	ANCESTRAL SPECIES	9	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368.bb	ENSGT00390000000970	ENSGT00940000156760.e.b	ENSGT00940000156760.f	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT01030000236803	ENSGT00940000156017.fb	ENSGT00560000077266.b	ENSGT00390000008610.a.b.a.a.b	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B	ENSGT00940000153259.a.a.b	ENSGT00390000016695	ENSGT00940000159187	ENSGT00390000004856
Eastern happy	MODERN SPECIES	5	ENSACLG00000003825	ENSACLG00000003814	PTX3 (ENSACLG00000003802)	ENSACLG00000003799	veph1 (ENSACLG00000003779)	ccnl1a (ENSACLG00000003702)	ENSACLG00000003336	TIPARP (ENSACLG00000003294)	ssr3 (ENSACLG00000003278)	ENSACLG00000003251	KCNAB1 (ENSACLG00000003199)	ENSACLG00000003138	gmps (ENSACLG00000003086)	slc33a1 (ENSACLG00000003045)	rps6kb1b (ENSACLG00000002988)	tubd1 (ENSACLG00000002918) #22	vmp1 (ENSACLG00000002866) #23	ENSACLG00000002815	ENSACLG00000002780	ENSACLG00000002762	ENSACLG00000002745	bace2 (ENSACLG00000002738)	DSCAM (ENSACLG00000002566)	PCP4 (ENSACLG00000002377)	ENSACLG00000002366	ENSACLG00000002318	ENSACLG00000002305	GET1 (ENSACLG00000002274)	BRWD1 (ENSACLG00000002135)	MIPEP (ENSACLG00000002037)	TNFRSF19 (ENSACLG00000002019)
Zebra mbuna	MODERN SPECIES	1096	serpini1 (ENSMZEG00005010980)	ENSMZEG00005010991	ENSMZEG00005011004	ENSMZEG00005011024	veph1 (ENSMZEG00005011041)	PTX3 (ENSMZEG00005011083)	ccnl1a (ENSMZEG00005011094)	ENSMZEG00005011115	TIPARP (ENSMZEG00005011128)	ssr3 (ENSMZEG00005011142)	kcnab1a (ENSMZEG00005011156)	ENSMZEG00005012186	gmps (ENSMZEG00005012210)	slc33a1 (ENSMZEG00005012250)	rps6kb1b (ENSMZEG00005012294)	tubd1 (ENSMZEG00005012335) #22	vmp1 (ENSMZEG00005012351) #23	ENSMZEG00005012387	ENSMZEG00005012408	ENSMZEG00005012426	bace2 (ENSMZEG00005012442)	ENSMZEG00005012458	ENSMZEG00005012462	bace2 (ENSMZEG00005012481)	ENSMZEG00005012501	ENSMZEG00005012508	ENSMZEG00005012519	DSCAM (ENSMZEG00005012544)	ENSMZEG00005012605	ENSMZEG00005012643	get1 (ENSMZEG00005012689)
Lyretail cichlid	MODERN SPECIES	357	ENSNBRG00000002351	ENSNBRG00000002317	ENSNBRG00000002301	ENSNBRG00000002274	PTX3 (ENSNBRG00000002253)	veph1 (ENSNBRG00000002195)	ccnl1a (ENSNBRG00000002147)	ENSNBRG00000002119	tiparp (ENSNBRG00000002101)	ssr3 (ENSNBRG00000002077)	kcnab1a (ENSNBRG00000002042)	ENSNBRG00000001977	gmps (ENSNBRG00000001913)	slc33a1 (ENSNBRG00000001875)	rps6kb1b (ENSNBRG00000001797)	tubd1 (ENSNBRG00000001764) #22	vmp1 (ENSNBRG00000001690) #23	ENSNBRG00000001584	ENSNBRG00000001564	ENSNBRG00000001548	bace2 (ENSNBRG00000001509)	DSCAM (ENSNBRG00000001377)	ENSNBRG00000001365	sh3bgr (ENSNBRG00000001356)	GET1 (ENSNBRG00000001335)	ENSNBRG00000001325	ENSNBRG00000001310	MIPEP (ENSNBRG00000001216)	tnfrsf19 (ENSNBRG00000001209)	SACS (ENSNBRG00000001180)	sgcg (ENSNBRG00000001171)
Nile tilapia	MODERN SPECIES	5	ENSONIG00000032201	ENSONIG00000005548	pqlc2l (ENSONIG00000005546)	veph1 (ENSONIG00000005544)	PTX3 (ENSONIG00000037163)	ENSONIG00000041653	ccnl1a (ENSONIG00000005540)	ENSONIG00000026707	tiparp (ENSONIG00000036070)	ssr3 (ENSONIG00000005536)	KCNAB1 (ENSONIG00000005523)	ENSONIG00000005521	gmps (ENSONIG00000005518)	slc33a1 (ENSONIG00000005517)	rps6kb1b (ENSONIG00000005515)	tubd1 (ENSONIG00000005513) #22	vmp1 (ENSONIG00000005506) #23	ENSONIG00000005503	ATM (ENSONIG00000005496)	bace2 (ENSONIG00000005485)	DSCAM (ENSONIG00000005472)	ENSONIG00000028558	ENSONIG00000032616	sh3bgr (ENSONIG00000039028)	WRB (ENSONIG00000005465)	BRWD1 (ENSONIG00000005455)	MIPEP (ENSONIG00000005451)	tnfrsf19 (ENSONIG00000005447)	SACS (ENSONIG00000005444)	sgcg (ENSONIG00000005441)	rps25 (ENSONIG00000005440)
Midas cichlid	MODERN SPECIES	1082	ENSACIG00000012902	golim4a (ENSACIG00000012889)	ENSACIG00000012874	PTX3 (ENSACIG00000012845)	veph1 (ENSACIG00000012800)	ccnl1a (ENSACIG00000012628)	ENSACIG00000012602	tiparp (ENSACIG00000012575)	ssr3 (ENSACIG00000012559)	KCNAB1 (ENSACIG00000012518)	ENSACIG00000012494	gmps (ENSACIG00000012452)	slc33a1 (ENSACIG00000012418)	rps6kb1b (ENSACIG00000012381)	ENSACIG00000012364	tubd1 (ENSACIG00000012321) #22	vmp1 (ENSACIG00000012291) #23	ENSACIG00000012273	ENSACIG00000012260	ENSACIG00000012252	bace2 (ENSACIG00000012213)	DSCAM (ENSACIG00000012139)	ENSACIG00000012122	sh3bgr (ENSACIG00000012110)	get1 (ENSACIG00000012099)	ENSACIG00000012030	MIPEP (ENSACIG00000011826)	tnfrsf19 (ENSACIG00000011787)
Atherinomorphae	ANCESTRAL SPECIES	15	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000159135	ENSGT01030000235461	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.e.b	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00940000172904	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT00940000159847	ENSGT00560000077266.b	ENSGT00940000165905	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B	ENSGT00940000153259.a.a.b	ENSGT00390000016695
Cyprinodontiformes	ANCESTRAL SPECIES	12	ENSGT00940000171284	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.e.b	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT00940000156017.fb	ENSGT00390000008610.a.b.a.a.b	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00560000077266.b	ENSGT00940000165905	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B
Aplocheiloidei	ANCESTRAL SPECIES	50						ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.e.b	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT01030000235087	ENSGT00940000159847	ENSGT00940000165905	ENSGT00530000064267	ENSGT00940000156017.fb	ENSGT00390000008610.a.b.a.a.b	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B	ENSGT00940000153259.a.a.b
Mangrove rivulus	MODERN SPECIES	51						veph1 (ENSKMAG00000020613)	PTX3 (ENSKMAG00000020630)	ccnl1a (ENSKMAG00000020652)	TIPARP (ENSKMAG00000020703)	ssr3 (ENSKMAG00000020716)	KCNAB1 (ENSKMAG00000020762)	ENSKMAG00000020819	gmps (ENSKMAG00000020846)	slc33a1 (ENSKMAG00000020878)	rps6kb1b (ENSKMAG00000000145)	tubd1 (ENSKMAG00000000289) #22	vmp1 (ENSKMAG00000000301) #23	ENSKMAG00000000385	ENSKMAG00000000398	ENSKMAG00000000424	ENSKMAG00000000451	bace2 (ENSKMAG00000000463)	DSCAM (ENSKMAG00000000525)	PCP4 (ENSKMAG00000000723)	SH3BGRL (ENSKMAG00000000741)	GET1 (ENSKMAG00000000772)	ENSKMAG00000000800	MIPEP (ENSKMAG00000000843)	tnfrsf19 (ENSKMAG00000000938)	SACS (ENSKMAG00000000970)	sgcg (ENSKMAG00000001046)
Turquoise killifish	MODERN SPECIES	1615	ENSNFUG00015013333	ENSNFUG00015013344	DDX51 (ENSNFUG00015013353)	SMIM8 (ENSNFUG00015013382)	ENSNFUG00015013390	VEPH (ENSNFUG00015013400)	PTX3 (ENSNFUG00015013412)	ENSNFUG00015013416	ENSNFUG00015013420	ccnl1a (ENSNFUG00015013461)	ENSNFUG00015013867	GMPS (ENSNFUG00015013903)	SLC33A1 (ENSNFUG00015013943)	rps6kb1b (ENSNFUG00015014003)	ENSNFUG00015015086	TUBD1 (ENSNFUG00015015119) #22	VMP1 (ENSNFUG00015015209) #23	ENSNFUG00015015401	Nfu_g_1_000287 (ENSNFUG00015015419)	bace2 (ENSNFUG00015015535)	ENSNFUG00015015567	ENSNFUG00015015573	DSCAM (ENSNFUG00015015815)	ENSNFUG00015016711	ENSNFUG00015016717	ENSNFUG00015016718	ENSNFUG00015016722	SH3BGR (ENSNFUG00015016727)	get1 (ENSNFUG00015016763)	ENSNFUG00015016913	MIPEP (ENSNFUG00015019198)
Cyprinodontoidei	ANCESTRAL SPECIES	9	ENSGT00940000171284	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.e.b	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00560000077266.b	ENSGT00940000165905	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B	ENSGT00940000153259.a.a.b	ENSGT00390000016695
Poeciliinae	ANCESTRAL SPECIES	14	ENSGT00940000171284	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.e.b	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT00940000159847	ENSGT00940000165905	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B	ENSGT00940000153259.a.a.b	ENSGT00390000016695	ENSGT00940000159187	ENSGT00390000004856.v
Poecilia	ANCESTRAL SPECIES	2	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.f	ENSGT00940000156760.e.b	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00940000165905	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B	ENSGT00940000153259.a.a.b	ENSGT00390000016695	ENSGT00940000159187	ENSGT00390000004856.v
NAME_6	ANCESTRAL SPECIES	71									ENSGT00940000155368.p.a	ENSGT00390000000970	ENSGT00940000156760.f	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00940000165905	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B	ENSGT00940000153259.a.a.b	ENSGT00390000016695	ENSGT00940000159187	ENSGT00390000004856.v
Amazon molly	MODERN SPECIES	619									tiparp (ENSPFOG00000004540)	ssr3 (ENSPFOG00000004548)	kcnab1a (ENSPFOG00000004612)	ENSPFOG00000004893	gmps (ENSPFOG00000005179)	slc33a1 (ENSPFOG00000005401)	rps6kb1b (ENSPFOG00000005577)	tubd1 (ENSPFOG00000005581) #22	vmp1 (ENSPFOG00000005645) #23	ENSPFOG00000005842	ATM (ENSPFOG00000005882)	TMPRSS2 (ENSPFOG00000022474)	bace2 (ENSPFOG00000006331)	DSCAM (ENSPFOG00000006723)	ENSPFOG00000008069	sh3bgr (ENSPFOG00000008082)	get1 (ENSPFOG00000008133)	ENSPFOG00000021806
Sailfin molly	MODERN SPECIES	1905											ENSPLAG00000015967	gmps (ENSPLAG00000015928)	slc33a1 (ENSPLAG00000015875)	rps6kb1b (ENSPLAG00000015842)	rps6kb1b (ENSPLAG00000015812)	tubd1 (ENSPLAG00000015794) #22	vmp1 (ENSPLAG00000015757) #23	ENSPLAG00000015720	ATM (ENSPLAG00000015692)
Guppy	MODERN SPECIES	443	ENSPREG00000017109	serpini1 (ENSPREG00000017073)	ENSPREG00000017052	ENSPREG00000017027	PTX3 (ENSPREG00000017014)	veph1 (ENSPREG00000016977)	ccnl1a (ENSPREG00000016928)	ENSPREG00000016911	TIPARP (ENSPREG00000016895)	ssr3 (ENSPREG00000016878)	KCNAB1 (ENSPREG00000016824)	ENSPREG00000016759	gmps (ENSPREG00000016715)	slc33a1 (ENSPREG00000016678)	rps6kb1b (ENSPREG00000016611)	tubd1 (ENSPREG00000016574) #22	vmp1 (ENSPREG00000016550) #23	ENSPREG00000016529	ATM (ENSPREG00000016478)	bace2 (ENSPREG00000016445)	DSCAM (ENSPREG00000016331)	sh3bgr (ENSPREG00000016297)	get1 (ENSPREG00000016282)	BRWD1 (ENSPREG00000016228)	MIPEP (ENSPREG00000016159)	TNFRSF19 (ENSPREG00000016118)	ENSPREG00000016094	sdhdb (ENSPREG00000016080)	timm8b (ENSPREG00000016068)	ENSPREG00000016062	SNX19 (ENSPREG00000016037)
Platyfish	MODERN SPECIES	9	ENSXMAG00000017223	serpini1 (ENSXMAG00000017196)	ENSXMAG00000017194	ENSXMAG00000017189	PTX3 (ENSXMAG00000017185)	veph1 (ENSXMAG00000017171)	ccnl1a (ENSXMAG00000025483)	ENSXMAG00000024244	TIPARP (ENSXMAG00000022705)	ssr3 (ENSXMAG00000017141)	KCNAB1 (ENSXMAG00000021396)	ENSXMAG00000017051	gmps (ENSXMAG00000017018)	slc33a1 (ENSXMAG00000017004)	rps6kb1b (ENSXMAG00000024330)	tubd1 (ENSXMAG00000016973) #22	vmp1 (ENSXMAG00000029668) #23	ENSXMAG00000022466	ATM (ENSXMAG00000016925)	bace2 (ENSXMAG00000016905)	DSCAM (ENSXMAG00000016834)	PCP4 (ENSXMAG00000023518)	sh3bgr (ENSXMAG00000021184)	get1 (ENSXMAG00000024681)	ENSXMAG00000026478	MIPEP (ENSXMAG00000001178)	tnfrsf19 (ENSXMAG00000001169)	SACS (ENSXMAG00000001161)	sgcg (ENSXMAG00000001141)	rps25 (ENSXMAG00000001136)	trappc4 (ENSXMAG00000001123)
NAME_4	ANCESTRAL SPECIES	48	ENSGT00940000171284	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.e.b	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548	ENSGT00940000154678.a.a.e	ENSGT00530000064267
Sheepshead minnow	MODERN SPECIES	136												ENSCVAG00000013745	gmps (ENSCVAG00000013802)	slc33a1 (ENSCVAG00000013855)	rps6kb1b (ENSCVAG00000013927)	tubd1 (ENSCVAG00000013974) #22	vmp1 (ENSCVAG00000014027) #23	ENSCVAG00000014039	ENSCVAG00000014053	ENSCVAG00000014064	ENSCVAG00000014136	bace2 (ENSCVAG00000014157)	DSCAM (ENSCVAG00000014165)	ENSCVAG00000014174	ENSCVAG00000000357	ST6GALNAC2 (ENSCVAG00000014197)	CASKIN2 (ENSCVAG00000000360)	mvp (ENSCVAG00000014286)	ENSCVAG00000014304	ENSCVAG00000014311	ENSCVAG00000014328
Mummichog	MODERN SPECIES	2337		serpini1 (ENSFHEG00000001535)	ENSFHEG00000001527	ENSFHEG00000001523	veph1 (ENSFHEG00000001515)	PTX3 (ENSFHEG00000001511)	ccnl1a (ENSFHEG00000000052)	ENSFHEG00000001495	TIPARP (ENSFHEG00000001493)	ssr3 (ENSFHEG00000001489)	KCNAB1 (ENSFHEG00000023223)	ENSFHEG00000023083	gmps (ENSFHEG00000023029)	slc33a1 (ENSFHEG00000022958)	rps6kb1b (ENSFHEG00000022944)	tubd1 (ENSFHEG00000022865) #22	vmp1 (ENSFHEG00000022833) #23	ENSFHEG00000022823	ENSFHEG00000022810	ENSFHEG00000022784	ENSFHEG00000022763	bace2 (ENSFHEG00000022744)	DSCAM (ENSFHEG00000022730)	ENSFHEG00000022635
Oryzias	ANCESTRAL SPECIES	8	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000178902	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000159135	ENSGT01030000235461	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.e.b	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00940000172904	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT00940000159847	ENSGT00940000165905	ENSGT00980000198612	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B	ENSGT00940000153259.a.a.b	ENSGT00390000016695	ENSGT00940000159187
Oryzias_b	ANCESTRAL SPECIES	14	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000178902	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.e.b	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00940000172904	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT01030000235087	ENSGT00530000064267	ENSGT00940000159847
Indian medaka	MODERN SPECIES	12	ENSOMEG00000004503	ENSOMEG00000004565	ENSOMEG00000004575	PTX3 (ENSOMEG00000004580)	veph1 (ENSOMEG00000004616)	ccnl1a (ENSOMEG00000004676)	ENSOMEG00000004695	TIPARP (ENSOMEG00000004712)	ssr3 (ENSOMEG00000004731)	KCNAB1 (ENSOMEG00000004823)	ENSOMEG00000004875	gmps (ENSOMEG00000004911)	ENSOMEG00000000107	slc33a1 (ENSOMEG00000004961)	rps6kb1b (ENSOMEG00000004988)	tubd1 (ENSOMEG00000005007) #22	vmp1 (ENSOMEG00000005037) #23	ENSOMEG00000000658	ENSOMEG00000005072	ENSOMEG00000005080	ENSOMEG00000005097	bace2 (ENSOMEG00000005121)	DSCAM (ENSOMEG00000005263)	rbm7 (ENSOMEG00000000117)	BARX2 (ENSOMEG00000005335)	KIRREL3 (ENSOMEG00000005416)	ENSOMEG00000005443	smtla (ENSOMEG00000005457)	ets1 (ENSOMEG00000005506)	fli1 (ENSOMEG00000005553)	kcnj1a.6 (ENSOMEG00000005565)
Javanese ricefish	MODERN SPECIES	4	ENSOJAG00000008161	ENSOJAG00000007894	serpini1 (ENSOJAG00000007758)	ENSOJAG00000007736	ENSOJAG00000007721	PTX3 (ENSOJAG00000007708)	veph1 (ENSOJAG00000007679)	ccnl1a (ENSOJAG00000007650)	ENSOJAG00000007626	TIPARP (ENSOJAG00000007617)	ssr3 (ENSOJAG00000007577)	KCNAB1 (ENSOJAG00000007464)	gmps (ENSOJAG00000006419)	slc33a1 (ENSOJAG00000006317)	rps6kb1b (ENSOJAG00000005562)	tubd1 (ENSOJAG00000005491) #22	vmp1 (ENSOJAG00000005368) #23	ENSOJAG00000005355	ENSOJAG00000005295	ENSOJAG00000005284	bace2 (ENSOJAG00000005226)	DSCAM (ENSOJAG00000004963)	ENSOJAG00000004912	sh3bgr (ENSOJAG00000004847)	ENSOJAG00000004824	si:ch211-132b12.2 (ENSOJAG00000004671)	ccnp (ENSOJAG00000004617)	akt2 (ENSOJAG00000004323)	DHX40 (ENSOJAG00000003692) #26	samsn1a (ENSOJAG00000003575)	hspa13 (ENSOJAG00000003552)
Oryzias_a	ANCESTRAL SPECIES	8	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT01030000235461	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.e.b	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000159548	ENSGT00940000154678.a.a.c	ENSGT00530000064267	ENSGT00940000159847	ENSGT00940000165905	ENSGT00980000198612	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B	ENSGT00940000153259.a.a.b	ENSGT00390000016695	ENSGT00940000159187	ENSGT00390000004856
Chinese medaka	DUPLICATION
Chinese medaka	MODERN SPECIES	337					veph1 (ENSOSIG00000011873)	ccnl1a (ENSOSIG00000011867)	TIPARP (ENSOSIG00000011861)	ENSOSIG00000011859	ssr3 (ENSOSIG00000011858)	KCNAB1 (ENSOSIG00000010651)	ENSOSIG00000010408	ENSOSIG00000010402	gmps (ENSOSIG00000009190)	slc33a1 (ENSOSIG00000009159)	rps6kb1b (ENSOSIG00000006671)	tubd1 (ENSOSIG00000006631) #22	ENSOSIG00000006628	vmp1 (ENSOSIG00000006507) #23	ENSOSIG00000006502	ENSOSIG00000006501
Chinese medaka	MODERN SPECIES	139																tubd1 (ENSOSIG00000004932) #22	ENSOSIG00000004930	vmp1 (ENSOSIG00000004921) #23	ENSOSIG00000004919
Japanese Medaka HdrR	MODERN SPECIES	4	ENSORLG00000012393	veph1 (ENSORLG00000012452)	PTX3 (ENSORLG00000026149)	ccnl1a (ENSORLG00000012502)	ENSORLG00000027313	ENSORLG00000025029	ENSORLG00000029262	TIPARP (ENSORLG00000023309)	ENSORLG00000025556	ssr3 (ENSORLG00000012523)	KCNAB1 (ENSORLG00000012536)	ENSORLG00000012554	gmps (ENSORLG00000012593)	slc33a1 (ENSORLG00000012608)	rps6kb1b (ENSORLG00000012636)	tubd1 (ENSORLG00000012665) #22	vmp1 (ENSORLG00000012702) #23	ENSORLG00000012728	ENSORLG00000027668	ENSORLG00000030057	bace2 (ENSORLG00000012838)	ENSORLG00000012892	PCP4 (ENSORLG00000029260)	ENSORLG00000024531	ENSORLG00000029158	sh3bgr (ENSORLG00000012924)	get1 (ENSORLG00000012945)	ENSORLG00000024611	ENSORLG00000024206	MIPEP (ENSORLG00000012997)	tnfrsf19 (ENSORLG00000013020)
Percomorphaceae_C	ANCESTRAL SPECIES	9	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT01030000235461	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.e.b	ENSGT00940000156760.f	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00940000172904	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT01030000235087	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00560000077266.b	ENSGT00390000008610.a.b.a.a.b	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B
Percomorphaceae_D	ANCESTRAL SPECIES	9	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT01030000235461	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.e.b	ENSGT00940000156760.f	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT00940000156017.fb	ENSGT00940000165905	ENSGT01030000235087	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00390000008610.a.b.a.a.b	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B
Anabantaria	ANCESTRAL SPECIES	9	ENSGT00940000164637	ENSGT00940000163939	ENSGT01100000263515.a.b.a.a	ENSGT00390000018660.l	ENSGT00940000159135	ENSGT01030000235461	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.e.b	ENSGT00940000156760.f	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00940000164489	ENSGT00390000008610.a.b.a.a.b	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B	ENSGT00940000153259.a.a.b	ENSGT00980000203400	ENSGT00390000016695
Anabantoidei	ANCESTRAL SPECIES	14	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637.w	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.e.b	ENSGT00940000156760.f	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00390000008610.a.b.a.a.b	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B	ENSGT00940000153259.a.a.b	ENSGT00390000016695	ENSGT00940000159187	ENSGT00390000004856
Climbing perch	MODERN SPECIES	4	serpini1 (ENSATEG00000003455)	ENSATEG00000003428	ENSATEG00000003399	ENSATEG00000003384	ENSATEG00000003367	ENSATEG00000003353	VEPH1 (ENSATEG00000003338)	ENSATEG00000002998	TIPARP (ENSATEG00000002945)	ssr3 (ENSATEG00000002923)	kcnab1a (ENSATEG00000002685)	ENSATEG00000002487	gmps (ENSATEG00000002414)	slc33a1 (ENSATEG00000002379)	rps6kb1b (ENSATEG00000002322)	ENSATEG00000002282 #22	vmp1 (ENSATEG00000002271) #23	ENSATEG00000002259	ENSATEG00000001745	bace2 (ENSATEG00000001688)	ENSATEG00000001528	PCP4 (ENSATEG00000030128)	ENSATEG00000025365	sh3bgr (ENSATEG00000027004)	ENSATEG00000001447	BRWD1 (ENSATEG00000025243)	MIPEP (ENSATEG00000001402)	TNFRSF19 (ENSATEG00000001369)	SACS (ENSATEG00000001324)	sgcg (ENSATEG00000001297)	RPS25 (ENSATEG00000001289)
Siamese fighting fish	MODERN SPECIES	4	ENSBSLG00000023182	ENSBSLG00000023190	ENSBSLG00000023203	pdcd10a (ENSBSLG00000023205)	ENSBSLG00000023207	ENSBSLG00000023217	veph1 (ENSBSLG00000023219)	PTX3 (ENSBSLG00000023245)	ccnl1a (ENSBSLG00000023262)	TIPARP (ENSBSLG00000023451)	ssr3 (ENSBSLG00000023464)	KCNAB1 (ENSBSLG00000023499)	gmps (ENSBSLG00000023613)	slc33a1 (ENSBSLG00000023790)	rps6kb1b (ENSBSLG00000023815)	tubd1 (ENSBSLG00000024370) #22	vmp1 (ENSBSLG00000024375) #23	ENSBSLG00000024388	ATM (ENSBSLG00000024399)	bace2 (ENSBSLG00000024512)	DSCAM (ENSBSLG00000024564)	PCP4 (ENSBSLG00000024632)	sh3bgr (ENSBSLG00000024644)	GET1 (ENSBSLG00000024662)	BRWD1 (ENSBSLG00000024719)	MIPEP (ENSBSLG00000025221)	tnfrsf19 (ENSBSLG00000002236)	SACS (ENSBSLG00000002286)	sgcg (ENSBSLG00000002399)	rps25 (ENSBSLG00000002417)	trappc4 (ENSBSLG00000002446)
Zig-zag eel	MODERN SPECIES	4	pdcd10a (ENSMAMG00000004345)	serpini1 (ENSMAMG00000004322)	ENSMAMG00000004283	ENSMAMG00000004259	ENSMAMG00000025628	VEPH1 (ENSMAMG00000004227)	ENSMAMG00000004160	ENSMAMG00000004139	ENSMAMG00000004117	TIPARP (ENSMAMG00000004108)	ssr3 (ENSMAMG00000027905)	KCNAB1 (ENSMAMG00000004062)	gmps (ENSMAMG00000003973)	slc33a1 (ENSMAMG00000003947)	rps6kb1b (ENSMAMG00000003898)	ENSMAMG00000003847 #22	vmp1 (ENSMAMG00000003783) #23	ENSMAMG00000003763	ENSMAMG00000003551	bace2 (ENSMAMG00000003518)	ENSMAMG00000003431	ENSMAMG00000003410	ENSMAMG00000003391	sh3bgr (ENSMAMG00000003326)	ENSMAMG00000003277	ENSMAMG00000003188	ENSMAMG00000003129	ENSMAMG00000003093	ENSMAMG00000003059	ENSMAMG00000026828	MPZL2 (ENSMAMG00000028349)
Carangaria	ANCESTRAL SPECIES	8	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.f	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT00940000156017.fb	ENSGT00940000165905	ENSGT01030000235087	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00390000008610.a.b.a.a.b	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B
Carangaria_A	ANCESTRAL SPECIES	10	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.e.b	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00940000156017.fb	ENSGT00390000008610.a.b.a.a.b	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B	ENSGT00940000153259.a.a.b
Seriola	ANCESTRAL SPECIES	107	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.e.b	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT00940000165615.b	ENSGT00940000156017.fb	ENSGT00390000008610.a.b.a.a.b	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B	ENSGT00940000153259.a.a.b
Greater amberjack	MODERN SPECIES	263	ENSSDUG00000012271	ENSSDUG00000012238	ENSSDUG00000012221	ENSSDUG00000012207	PTX3 (ENSSDUG00000012167)	veph1 (ENSSDUG00000012112)	ccnl1a (ENSSDUG00000012095)	ENSSDUG00000012089	TIPARP (ENSSDUG00000012080)	ssr3 (ENSSDUG00000012065)	kcnab1a (ENSSDUG00000012041)	ENSSDUG00000012007	gmps (ENSSDUG00000011961)	slc33a1 (ENSSDUG00000011921)	rps6kb1b (ENSSDUG00000011826)	tubd1 (ENSSDUG00000011791) #22	vmp1 (ENSSDUG00000011759) #23	ENSSDUG00000011642	ATM (ENSSDUG00000011432)	ENSSDUG00000011401	bace2 (ENSSDUG00000011375)	DSCAM (ENSSDUG00000011324)	PCP4 (ENSSDUG00000011309)	SH3BGRL (ENSSDUG00000011284)	GET1 (ENSSDUG00000011276)	ENSSDUG00000011259	BRWD1 (ENSSDUG00000011194)	MIPEP (ENSSDUG00000011133)	tnfrsf19 (ENSSDUG00000011111)
Yellowtail amberjack	MODERN SPECIES	2709								ccnl1a (ENSSLDG00000017234)	TIPARP (ENSSLDG00000017252)	ssr3 (ENSSLDG00000017262)	KCNAB1 (ENSSLDG00000017278)	ENSSLDG00000017315	gmps (ENSSLDG00000017360)	slc33a1 (ENSSLDG00000017409)	rps6kb1b (ENSSLDG00000017438)	tubd1 (ENSSLDG00000017471) #22	vmp1 (ENSSLDG00000017538) #23	ENSSLDG00000017549	ENSSLDG00000017562	ATM (ENSSLDG00000017590)	ENSSLDG00000017743	bace2 (ENSSLDG00000017766)	DSCAM (ENSSLDG00000017857)	PCP4 (ENSSLDG00000017984)	ENSSLDG00000017997	SH3BGRL (ENSSLDG00000018039)	GET1 (ENSSLDG00000018117)	ENSSLDG00000018131	ENSSLDG00000018147	MIPEP (ENSSLDG00000018219)	tnfrsf19 (ENSSLDG00000018296)
Barramundi perch	MODERN SPECIES	311								TIPARP (ENSLCAG00010006708)	ssr3 (ENSLCAG00010006719)	KCNAB1 (ENSLCAG00010006738)	ENSLCAG00010006762	ENSLCAG00010006770	gmps (ENSLCAG00010006816)	slc33a1 (ENSLCAG00010006951)	rps6kb1b (ENSLCAG00010006981)	tubd1 (ENSLCAG00010007190) #22	vmp1 (ENSLCAG00010007207) #23	ENSLCAG00010007223	TMPRSS2 (ENSLCAG00010007274)	bace2 (ENSLCAG00010007279)	DSCAM (ENSLCAG00010007372)	ENSLCAG00010007764	ENSLCAG00010007770	sh3bgr (ENSLCAG00010007787)	GET1 (ENSLCAG00010007806)	BRWD1 (ENSLCAG00010008026)	MIPEP (ENSLCAG00010008971)
Pleuronectoidei	ANCESTRAL SPECIES	13	ENSGT00390000017913.`b.a	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00390000000970	ENSGT00940000156760.f	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT00940000156017.fb	ENSGT00940000165905	ENSGT01030000235087	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00390000008610.a.b.a.a.b	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B
Turbot	MODERN SPECIES	15	ENSSMAG00000004795	zgc:101731 (ENSSMAG00000030306)	ENSSMAG00000004780	ENSSMAG00000033293	ENSSMAG00000000805	ENSSMAG00000010153	ENSSMAG00000019928	ENSSMAG00000037429	ENSSMAG00000031710	rps3 (ENSSMAG00000004341)	KCTD14 (ENSSMAG00000034158)	ENSSMAG00000004233	aamdc (ENSSMAG00000025950)	ENSSMAG00000004204	rps6kb1b (ENSSMAG00000004157)	ENSSMAG00000004126 #22	vmp1 (ENSSMAG00000004088) #23	ENSSMAG00000004072	ENSSMAG00000003979	ENSSMAG00000003958	bace2 (ENSSMAG00000003934)	ENSSMAG00000003813	ENSSMAG00000003801	ENSSMAG00000003771	sh3bgr (ENSSMAG00000025337)	ENSSMAG00000003726	BRWD1 (ENSSMAG00000033221)	MIPEP (ENSSMAG00000003706)	ENSSMAG00000035276	ENSSMAG00000023732	TNFRSF19 (ENSSMAG00000003699)
Tongue sole	MODERN SPECIES	14	ENSCSEG00000001766	ENSCSEG00000001772	ENSCSEG00000001775	veph1 (ENSCSEG00000001780)	PTX3 (ENSCSEG00000001784)	ccnl1a (ENSCSEG00000001787)	ENSCSEG00000001790	ENSCSEG00000001792	TIPARP (ENSCSEG00000001795)	ssr3 (ENSCSEG00000001801)	kcnab1a (ENSCSEG00000001804)	ENSCSEG00000001836	gmps (ENSCSEG00000001844)	slc33a1 (ENSCSEG00000001853)	rps6kb1b (ENSCSEG00000001890)	tubd1 (ENSCSEG00000001994) #22	vmp1 (ENSCSEG00000001998) #23	ENSCSEG00000002004	ATM (ENSCSEG00000002010)	ENSCSEG00000002045	bace2 (ENSCSEG00000002049)	DSCAM (ENSCSEG00000002056)	PCP4 (ENSCSEG00000002068)	ENSCSEG00000002075	get1 (ENSCSEG00000002084)	ENSCSEG00000002092	ENSCSEG00000002102	MIPEP (ENSCSEG00000002112)	tnfrsf19 (ENSCSEG00000002123)	ENSCSEG00000002124	smtla (ENSCSEG00000002132)
Eupercaria	ANCESTRAL SPECIES	7	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.e.b	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00940000172904	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT01030000235087	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00560000077266.b	ENSGT00390000008610.a.b.a.a.b	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B
Eupecaria_A	ANCESTRAL SPECIES	9	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.f	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00940000172904	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT01030000235087	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00560000077266.b	ENSGT00390000008610.a.b.a.a.b	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B
Ballan wrasse	MODERN SPECIES	187	serpini1 (ENSLBEG00000011139)	ENSLBEG00000011193	ENSLBEG00000011230	ENSLBEG00000011295	veph1 (ENSLBEG00000011336)	PTX3 (ENSLBEG00000011385)	ccnl1a (ENSLBEG00000011423)	ENSLBEG00000011488	TIPARP (ENSLBEG00000011510)	ssr3 (ENSLBEG00000011529)	KCNAB1 (ENSLBEG00000011567)	ENSLBEG00000011623	gmps (ENSLBEG00000011676)	slc33a1 (ENSLBEG00000011762)	rps6kb1b (ENSLBEG00000011832)	tubd1 (ENSLBEG00000011893) #22	vmp1 (ENSLBEG00000011931) #23	ENSLBEG00000011976	ATM (ENSLBEG00000012075)	ENSLBEG00000012284	bace2 (ENSLBEG00000012380)	DSCAM (ENSLBEG00000012440)	PCP4 (ENSLBEG00000012516)	sh3bgr (ENSLBEG00000012550)	get1 (ENSLBEG00000012607)	ENSLBEG00000012641	ENSLBEG00000012658	MIPEP (ENSLBEG00000012788)	ENSLBEG00000012942	SACS (ENSLBEG00000012985)	sgcg (ENSLBEG00000013026)
Eupecaria_B	ANCESTRAL SPECIES	9	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.f	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00940000172904	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT01030000235087	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00560000077266.b	ENSGT00390000008610.a.b.a.a.b	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B
Perciformes	ANCESTRAL SPECIES	10	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.f	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00940000172904	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT01030000235087	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00560000077266.b	ENSGT00390000008610.a.b.a.a.b	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B	ENSGT00940000153259.a.a.b
Perciformes_a	ANCESTRAL SPECIES	9	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT01030000235461	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.f	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT00940000159847	ENSGT01030000235087	ENSGT00940000165615.b	ENSGT00940000156017.fb	ENSGT00560000077266.b	ENSGT00390000008610.a.b.a.a.b	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B
Pike perch	MODERN SPECIES	86	serpini1 (ENSSLUG00000020595)	ENSSLUG00000020582	ENSSLUG00000020572	ENSSLUG00000020566	PTX3 (ENSSLUG00000020564)	veph1 (ENSSLUG00000020479)	ccnl1a (ENSSLUG00000020315)	ENSSLUG00000020303	TIPARP (ENSSLUG00000020290)	ssr3 (ENSSLUG00000020275)	kcnab1a (ENSSLUG00000020259)	ENSSLUG00000020247	gmps (ENSSLUG00000020209)	slc33a1 (ENSSLUG00000020198)	RPS6KB1 (ENSSLUG00000020145) #21	tubd1 (ENSSLUG00000020130) #22	vmp1 (ENSSLUG00000020129) #23	ENSSLUG00000020122	ATM (ENSSLUG00000020095)	TMPRSS2 (ENSSLUG00000020078)	bace2 (ENSSLUG00000020071)	DSCAM (ENSSLUG00000020065)	ENSSLUG00000020063	ENSSLUG00000020060	SH3BGRL (ENSSLUG00000020052)	ENSSLUG00000020046	GET1 (ENSSLUG00000020040)	BRWD1 (ENSSLUG00000015979)	MIPEP (ENSSLUG00000015474)	tnfrsf19 (ENSSLUG00000015420)	ENSSLUG00000015394
Channel bull blenny	MODERN SPECIES	4	pdcd10a (ENSCGOG00000006318)	serpini1 (ENSCGOG00000006326)	ENSCGOG00000006427	ENSCGOG00000006429	ENSCGOG00000006431	veph1 (ENSCGOG00000006443)	PTX3 (ENSCGOG00000006518)	ccnl1a (ENSCGOG00000006520)	ENSCGOG00000006572	TIPARP (ENSCGOG00000006581)	ssr3 (ENSCGOG00000006585)	ENSCGOG00000006594	gmps (ENSCGOG00000006633)	slc33a1 (ENSCGOG00000007409)	rps6kb1b (ENSCGOG00000007441)	tubd1 (ENSCGOG00000009591) #22	vmp1 (ENSCGOG00000009611) #23	ENSCGOG00000009762	ATM (ENSCGOG00000009803)	ENSCGOG00000010186	ENSCGOG00000010187	bace2 (ENSCGOG00000010192)	DSCAM (ENSCGOG00000010331)	PCP4 (ENSCGOG00000010510)	sh3bgr (ENSCGOG00000010512)	ENSCGOG00000010514	get1 (ENSCGOG00000010518)	BRWD1 (ENSCGOG00000010580)	MIPEP (ENSCGOG00000011811)	tnfrsf19 (ENSCGOG00000013459)	ENSCGOG00000013463
Cottioidei	ANCESTRAL SPECIES	4	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.f	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000154203 #21	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00940000172904	ENSGT00390000012388	ENSGT00670000098061	ENSGT01030000236977	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT01030000235087	ENSGT00940000165615.b	ENSGT00940000156017.fb	ENSGT00390000008610.a.b.a.a.b	ENSGT00940000159847	ENSGT00940000165905	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B
Lumpfish	MODERN SPECIES	4	serpini1 (ENSCLMG00005014267)	ENSCLMG00005014268	ENSCLMG00005014269	ENSCLMG00005014270	veph1 (ENSCLMG00005014271)	PTX3 (ENSCLMG00005014275)	ccnl1a (ENSCLMG00005014288)	ENSCLMG00005014363	TIPARP (ENSCLMG00005014365)	ssr3 (ENSCLMG00005001348)	kcnab1a (ENSCLMG00005001395)	ENSCLMG00005001666	gmps (ENSCLMG00005001830)	slc33a1 (ENSCLMG00005002225)	rps6kb1b (ENSCLMG00005002261)	tubd1 (ENSCLMG00005004241) #22	vmp1 (ENSCLMG00005004248) #23	ENSCLMG00005004360	ATM (ENSCLMG00005004417)	ENSCLMG00005004592	bace2 (ENSCLMG00005004602)	DSCAM (ENSCLMG00005004757)	ENSCLMG00005005171	ENSCLMG00005005173	sh3bgr (ENSCLMG00005005175)	ENSCLMG00005005176	get1 (ENSCLMG00005005177)	ENSCLMG00005005199	MIPEP (ENSCLMG00005008099)	tnfrsf19 (ENSCLMG00005009631)	ENSCLMG00005009632
Stickleback	MODERN SPECIES		pdcd10a (ENSGACG00000007171)	serpini1 (ENSGACG00000007161)	ENSGACG00000007144	ENSGACG00000007140	PTX3 (ENSGACG00000007125)	veph1 (ENSGACG00000007117)	ccnl1a (ENSGACG00000007101)	TIPARP (ENSGACG00000007095)	ENSGACG00000007093	ssr3 (ENSGACG00000007071)	kcnab1a (ENSGACG00000007068)	ENSGACG00000007060	gmps (ENSGACG00000007053)	slc33a1 (ENSGACG00000007046)	RPS6KB1 (ENSGACG00000007027) #21	tubd1 (ENSGACG00000007016) #22	vmp1 (ENSGACG00000007009) #23	ENSGACG00000007008	ENSGACG00000007005	ENSGACG00000006998	ATM (ENSGACG00000006981)	ENSGACG00000006979	bace2 (ENSGACG00000006936)	DSCAM (ENSGACG00000006917)	ENSGACG00000006915	ENSGACG00000006908	ENSGACG00000006906	ENSGACG00000006903	SH3BGRL (ENSGACG00000006900)	GET1 (ENSGACG00000006890)	ENSGACG00000006887
Eupecaria_C	ANCESTRAL SPECIES	7	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.e.b	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00560000077266.b	ENSGT00390000008610.a.b.a.a.b	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B	ENSGT00940000153259.a.a.b	ENSGT00390000016695
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	5	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00940000163939	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00990000203825	ENSGT00940000155368	ENSGT00390000000970	ENSGT00940000156760.e.b	ENSGT00940000160473	ENSGT00390000006591	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00560000077266.b	ENSGT00390000008610.a.b.a.a.b	ENSGT00950000183107.a.b.a	ENSGT00950000183171.B	ENSGT00940000153259.a.a.b	ENSGT00390000016695
European seabass	MODERN SPECIES	3	serpini1 (ENSDLAG00005000720)	ENSDLAG00005000719	ENSDLAG00005000713	ENSDLAG00005031780	ENSDLAG00005028846	VEPH1 (ENSDLAG00005000686)	ENSDLAG00005000662	ENSDLAG00005029556	TIPARP (ENSDLAG00005000653)	ssr3 (ENSDLAG00005034114)	kcnab1a (ENSDLAG00005033535)	ENSDLAG00005000541	gmps (ENSDLAG00005000390)	slc33a1 (ENSDLAG00005000369)	rps6kb1b (ENSDLAG00005000265)	ENSDLAG00005000199 #22	vmp1 (ENSDLAG00005000095) #23	ENSDLAG00005034756	ENSDLAG00005015958	ENSDLAG00005015906	bace2 (ENSDLAG00005015782)	ENSDLAG00005015557	PCP4 (ENSDLAG00005034194)	ENSDLAG00005015529	sh3bgr (ENSDLAG00005033194)	ENSDLAG00005033085	GET1 (ENSDLAG00005028635)	BRWD1 (ENSDLAG00005014292)	MIPEP (ENSDLAG00005012227)	TNFRSF19 (ENSDLAG00005012166)	SACS (ENSDLAG00005012160)
Large yellow croaker	MODERN SPECIES	479	serpini1 (ENSLCRG00005019413)	ENSLCRG00005019419	ENSLCRG00005019422	ENSLCRG00005019425	veph1 (ENSLCRG00005019426)	PTX3 (ENSLCRG00005019431)	ccnl1a (ENSLCRG00005019432)	ENSLCRG00005019436	TIPARP (ENSLCRG00005019437)	ssr3 (ENSLCRG00005019439)	KCNAB1 (ENSLCRG00005019456)	ENSLCRG00005019917	gmps (ENSLCRG00005019918)	slc33a1 (ENSLCRG00005020034)	rps6kb1b (ENSLCRG00005020043)	tubd1 (ENSLCRG00005020200) #22	vmp1 (ENSLCRG00005020202) #23	ENSLCRG00005020210	ATM (ENSLCRG00005002491)	ENSLCRG00005004478	bace2 (ENSLCRG00005004486)	DSCAM (ENSLCRG00005004721)	ENSLCRG00005006764	ENSLCRG00005006765	SH3BGRL (ENSLCRG00005006767)	GET1 (ENSLCRG00005006768)	ENSLCRG00005006800	MIPEP (ENSLCRG00005009341)	tnfrsf19 (ENSLCRG00005009394)	SACS (ENSLCRG00005009399)	sgcg (ENSLCRG00005009415)
Gilthead seabream	MODERN SPECIES	11	ENSSAUG00010024038	ENSSAUG00010024040	ENSSAUG00010024042	veph1 (ENSSAUG00010024046)	PTX3 (ENSSAUG00010024052)	ENSSAUG00010024054	ccnl1a (ENSSAUG00010024057)	ENSSAUG00010024059	TIPARP (ENSSAUG00010024062)	ssr3 (ENSSAUG00010024063)	KCNAB1 (ENSSAUG00010024065)	ENSSAUG00010024068	gmps (ENSSAUG00010024081)	slc33a1 (ENSSAUG00010024579)	rps6kb1b (ENSSAUG00010024586)	tubd1 (ENSSAUG00010024666) #22	vmp1 (ENSSAUG00010024671) #23	ENSSAUG00010024677	ATM (ENSSAUG00010024686)	ENSSAUG00010004041	bace2 (ENSSAUG00010004045)	DSCAM (ENSSAUG00010004746)	PCP4 (ENSSAUG00010005428)	ENSSAUG00010005429	sh3bgr (ENSSAUG00010005431)	ENSSAUG00010005437	GET1 (ENSSAUG00010005439)	BRWD1 (ENSSAUG00010005505)	MIPEP (ENSSAUG00010007830)	tnfrsf19 (ENSSAUG00010008977)	ENSSAUG00010008979
Tetraodontidae	ANCESTRAL SPECIES	42	ENSGT00940000157637.a.n.a	ENSGT00940000158681.a	ENSGT00940000157637.a.n.b	ENSGT00940000158168	ENSGT00390000015980	ENSGT00940000164637	ENSGT00390000018660.l	ENSGT01100000263515.a.b.a.a	ENSGT00940000159135	ENSGT00390000000970	ENSGT00940000156760.e.b	ENSGT00940000160473	ENSGT00390000006591.p	ENSGT00940000154019.a	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT01030000235087	ENSGT00940000159847	ENSGT00390000008610.a.b.a.a.b	ENSGT00950000183171.B	ENSGT00940000153259.a.a.b	ENSGT00390000016695	ENSGT00940000159187	ENSGT00390000004856	ENSGT00940000153761.B
Fugu	MODERN SPECIES	2	ENSTRUG00000001552	ENSTRUG00000028082	serpini1 (ENSTRUG00000012444)	ENSTRUG00000012663	ENSTRUG00000012672	ptx3 (ENSTRUG00000027736)	veph1 (ENSTRUG00000026457)	ccnl1a (ENSTRUG00000012879)	TIPARP (ENSTRUG00000022644)	ssr3 (ENSTRUG00000021463)	KCNAB1 (ENSTRUG00000007233)	ENSTRUG00000006589	gmps (ENSTRUG00000006141)	slc33a1 (ENSTRUG00000006020)	rps6kb1b (ENSTRUG00000005648)	tubd1 (ENSTRUG00000005354) #22	vmp1 (ENSTRUG00000005028) #23	ENSTRUG00000023256	ATM (ENSTRUG00000030407)	TMPRSS2 (ENSTRUG00000002768)	bace2 (ENSTRUG00000002469)	DSCAM (ENSTRUG00000001465)	ENSTRUG00000001463	sh3bgr (ENSTRUG00000001393)	GET1 (ENSTRUG00000001308)	MIPEP (ENSTRUG00000000713)	tnfrsf19 (ENSTRUG00000000696)	SACS (ENSTRUG00000000662)	sgcg (ENSTRUG00000000565)	rps25 (ENSTRUG00000000547)	trappc4 (ENSTRUG00000000505)
Tetraodon	MODERN SPECIES	26	PLPPR5 (ENSTNIG00000003367)	ENSTNIG00000001161	lrp6 (ENSTNIG00000003359)	tbk1 (ENSTNIG00000003358)	gpr19 (ENSTNIG00000003357)	crebl2 (ENSTNIG00000003356)	dusp16 (ENSTNIG00000003355)	ENSTNIG00000003354	slc38a9 (ENSTNIG00000003352)	ENSTNIG00000000263	aldh4a1 (ENSTNIG00000003342)	ENSTNIG00000003340	gmps (ENSTNIG00000003339)	slc33a1 (ENSTNIG00000003338)	rps6kb1b (ENSTNIG00000003337)	tubd1 (ENSTNIG00000003336) #22	vmp1 (ENSTNIG00000003335) #23	ENSTNIG00000003334	ENSTNIG00000003333	ENSTNIG00000005878	ENSTNIG00000003331	ENSTNIG00000003329	rnf150b (ENSTNIG00000003327)	SNIP1 (ENSTNIG00000000342)	dnali1 (ENSTNIG00000003325)	ENO2 (ENSTNIG00000003324)	mlf2 (ENSTNIG00000003323)	cdc42l (ENSTNIG00000003322)	wnt4b (ENSTNIG00000003321)	septin4a (ENSTNIG00000003311)	LIMK1 (ENSTNIG00000003310)
Tiger tail seahorse	MODERN SPECIES	111	serpini1 (ENSHCOG00000012118)	ENSHCOG00000012055	ENSHCOG00000012043	veph1 (ENSHCOG00000012032)	PTX3 (ENSHCOG00000011996)	ccnl1a (ENSHCOG00000011929)	ENSHCOG00000011900	TIPARP (ENSHCOG00000011891)	ssr3 (ENSHCOG00000011884)	KCNAB1 (ENSHCOG00000011865)	kcnab1a (ENSHCOG00000011840)	ENSHCOG00000011815	gmps (ENSHCOG00000011768)	slc33a1 (ENSHCOG00000011734)	rps6kb1b (ENSHCOG00000011708)	tubd1 (ENSHCOG00000011655) #22	vmp1 (ENSHCOG00000011637) #23	ENSHCOG00000011606	ENSHCOG00000011601	ENSHCOG00000011572	TMPRSS2 (ENSHCOG00000011555)	bace2 (ENSHCOG00000011505)	DSCAM (ENSHCOG00000011496)	ENSHCOG00000011448	sh3bgr (ENSHCOG00000011431)	GET1 (ENSHCOG00000011367)	ENSHCOG00000011348	ENSHCOG00000011328	MIPEP (ENSHCOG00000011277)	tnfrsf19 (ENSHCOG00000011223)	SACS (ENSHCOG00000011214)
Pinecone sodierfish	MODERN SPECIES	4	ENSMMDG00005017516	ENSMMDG00005017514	ENSMMDG00005017513	PTX3 (ENSMMDG00005017497)	veph1 (ENSMMDG00005017493)	ccnl1a (ENSMMDG00005017462)	ENSMMDG00005017461	ENSMMDG00005017459	TIPARP (ENSMMDG00005017457)	ssr3 (ENSMMDG00005017456)	kcnab1a (ENSMMDG00005017454)	ENSMMDG00005017131	gmps (ENSMMDG00005016018)	slc33a1 (ENSMMDG00005016008)	RPS6KB1 (ENSMMDG00005013554) #21	tubd1 (ENSMMDG00005013533) #22	vmp1 (ENSMMDG00005013529) #23	ENSMMDG00005013525	ATM (ENSMMDG00005012316)	ENSMMDG00005012284	bace2 (ENSMMDG00005012072)	DSCAM (ENSMMDG00005012058)	ENSMMDG00005012054	sh3bgr (ENSMMDG00005012051)	GET1 (ENSMMDG00005012047)	BRWD1 (ENSMMDG00005011464)	MIPEP (ENSMMDG00005008358)	tnfrsf19 (ENSMMDG00005008287)	ENSMMDG00005008284	SACS (ENSMMDG00005008283)	sgcg (ENSMMDG00005008249)
Cod	MODERN SPECIES	7	ENSGMOG00000016151	ENSGMOG00000007093	ENSGMOG00000009158	ENSGMOG00000030358	ENSGMOG00000027732	ENSGMOG00000009109	PTX3 (ENSGMOG00000025297)	ENSGMOG00000009099	tiparp (ENSGMOG00000034698)	ssr3 (ENSGMOG00000009082)	KCNAB1 (ENSGMOG00000009066)	ENSGMOG00000009045	gmps (ENSGMOG00000009029)	slc33a1 (ENSGMOG00000009015)	rps6kb1b (ENSGMOG00000008995)	ENSGMOG00000008987 #22	vmp1 (ENSGMOG00000008975) #23	ENSGMOG00000035807	ENSGMOG00000008875	bace2 (ENSGMOG00000008848)	ENSGMOG00000008806	ENSGMOG00000036534	ENSGMOG00000033004	PCP4 (ENSGMOG00000026737)	ENSGMOG00000008789	sh3bgr (ENSGMOG00000008783)	ENSGMOG00000008777	BRWD1 (ENSGMOG00000033322)	MIPEP (ENSGMOG00000008729)	ENSGMOG00000008714	SACS (ENSGMOG00000008699)
Protacanthopterygii	ANCESTRAL SPECIES	15	ENSGT00940000157231.a.b	ENSGT00940000155457.a.b	ENSGT01050000244814.a.a.b.b.b.b.a	ENSGT00950000183206.a.b.a.a.b.c.b	ENSGT00940000164443.b.b	ENSGT00940000166822	ENSGT00950000183068.a.b.d	ENSGT00940000156527.d	ENSGT00940000156881.g	ENSGT00940000157408.a.b	ENSGT00530000063516.a.a.a.b	ENSGT00530000063947.C.c	ENSGT00870000136508.c.b	ENSGT00390000013680.b.b #19	ENSGT00940000155062.b.d.a	ENSGT00940000157069 #22	ENSGT00390000007230.b #23	ENSGT00390000012388	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548	ENSGT00940000154678.a.a	ENSGT00530000064267	ENSGT00940000165615.b	ENSGT00940000159847	ENSGT00940000156017.fb	ENSGT00560000077266.b	ENSGT00390000008610.a.b.a.a.b	ENSGT00940000153259.a.a.b.g	ENSGT00390000016695	ENSGT00940000159187.k
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	1057													ENSGT00870000136508.c.b.h	ENSGT00390000013680.b.b.k.b #19	ENSGT00940000155062.b.d.a.f	ENSGT00940000157069.c #22	ENSGT00390000007230.b.d #23
Salmoninae_a	ANCESTRAL SPECIES	19	ENSGT01050000244814.a.a.b.b.b.b.a.d	ENSGT00950000183206.a.b.a.a.b.c.b.b	ENSGT00940000164443.b.b	ENSGT00940000166822.b	ENSGT00950000183068.a.b.d.c	ENSGT00940000156527.d.d	ENSGT00940000156881.g.c	ENSGT00940000157408.a.b.c	ENSGT00530000063516.a.a.a.b.d	ENSGT00940000158413.a.a	ENSGT01030000234582.f.a.b.p.a	ENSGT00530000063947.C.c.d	ENSGT00870000136508.c.b.h	ENSGT00390000013680.b.b.k.b #19	ENSGT00940000155062.b.d.a.f	ENSGT00940000157069.c #22	ENSGT00390000007230.b.d #23	ENSGT00390000012388.c	ENSGT00940000159548.m	ENSGT00940000154678.a.a.m.b	ENSGT00530000064267.n	ENSGT00940000165615.b	ENSGT00940000159847.f.b	ENSGT00560000077266.b.o
Salmo	ANCESTRAL SPECIES	7	ENSGT01050000244814.a.a.b.b.b.b.a.d	ENSGT00950000183206.a.b.a.a.b.c.b.b	ENSGT00940000164443.b.b	ENSGT00940000166822.b	ENSGT00950000183068.a.b.d.c	ENSGT00940000156527.d.d	ENSGT00940000156881.g.c	ENSGT00940000157408.a.b.c	ENSGT00530000063516.a.a.a.b.d	ENSGT00940000158413.a.a	ENSGT01030000234582.f.a.b.p.a	ENSGT00530000063947.C.c.d	ENSGT00870000136508.c.b.h	ENSGT00390000013680.b.b.k.b #19	ENSGT00940000155062.b.d.a.f	ENSGT00940000157069.c #22	ENSGT00390000007230.b.d #23	ENSGT00390000012388.c	ENSGT00670000098061.dc	ENSGT00940000159548.m	ENSGT00940000154678.a.a.m.b	ENSGT01030000235187.b.b	ENSGT00940000165615.b	ENSGT00940000159847.f.b	ENSGT00560000077266.b.o	ENSGT00390000008610.a.b.a.a.b.b	ENSGT00950000183107.a.b.a.e.b	ENSGT00950000183171.B	ENSGT00940000153259.a.a.b.g.b	ENSGT00390000016695.u	ENSGT00940000159187.k.a
River trout	MODERN SPECIES	18	lim2.3 (ENSSTUG00000030560)	ENSSTUG00000030586	ENSSTUG00000030772	ENSSTUG00000030785	picalmb (ENSSTUG00000030933)	ZPLD1 (ENSSTUG00000037419)	alcamb (ENSSTUG00000037434)	dyrk1ab (ENSSTUG00000037489)	thap12b (ENSSTUG00000037593)	WNT11 (ENSSTUG00000037604)	DGAT2 (ENSSTUG00000037676)	ENSSTUG00000037691	zgc:112083 (ENSSTUG00000037705)	med13b (ENSSTUG00000037765) #19	rps6kb1b (ENSSTUG00000038781)	tubd1 (ENSSTUG00000039484) #22	vmp1 (ENSSTUG00000039588) #23	ENSSTUG00000040517	ENSSTUG00000040587	bace2 (ENSSTUG00000040624)	ENSSTUG00000043011	ENSSTUG00000043037	sh3bgr (ENSSTUG00000043092)	GET1 (ENSSTUG00000043283)	BRWD1 (ENSSTUG00000043308)	MIPEP (ENSSTUG00000043505)	tnfrsf19 (ENSSTUG00000045269)	SACS (ENSSTUG00000045288)	sgcg (ENSSTUG00000045324)	rps25 (ENSSTUG00000045337)	trappc4 (ENSSTUG00000045346)
Atlantic salmon	MODERN SPECIES	12	ENSSSAG00000067344	ENSSSAG00000096585	ENSSSAG00000068747	ENSSSAG00000068754	picalmb (ENSSSAG00000068883)	ENSSSAG00000074932	alcamb (ENSSSAG00000074948)	dyrk1ab (ENSSSAG00000075014)	thap12b (ENSSSAG00000075037)	WNT11 (ENSSSAG00000075039)	DGAT2 (ENSSSAG00000075042)	ma6d1 (ENSSSAG00000075045)	zgc:112083 (ENSSSAG00000075048)	med13b (ENSSSAG00000075136) #19	rps6kb1b (ENSSSAG00000038645)	tubd1 (ENSSSAG00000076249) #22	vmp1 (ENSSSAG00000076254) #23	ENSSSAG00000095706	ENSSSAG00000102380	ENSSSAG00000088954	bace2 (ENSSSAG00000076277)	ENSSSAG00000076303	ENSSSAG00000076326	ENSSSAG00000105438	sh3bgr (ENSSSAG00000076342)	ENSSSAG00000076366	GET1 (ENSSSAG00000099223)	BRWD1 (ENSSSAG00000076419)	MIPEP (ENSSSAG00000077681)	TNFRSF19 (ENSSSAG00000116770)	SACS (ENSSSAG00000077992)
Oncorhynchus	ANCESTRAL SPECIES	24	ENSGT00940000155457.a.b.h	ENSGT01050000244814.a.a.b.b.b.b.a.d	ENSGT00950000183206.a.b.a.a.b.c.b.b	ENSGT00940000164443.b.b	ENSGT00940000166822.b	ENSGT00950000183068.a.b.d.c	ENSGT00940000156527.d.d	ENSGT00940000156881.g.c	ENSGT00940000157408.a.b.c	ENSGT00530000063516.a.a.a.b.d	ENSGT01030000234582.f.a.b.p.a	ENSGT00530000063947.C.c.d	ENSGT00870000136508.c.b.h	ENSGT00390000013680.b.b.k.b #19	ENSGT00940000155062.b.d.a.f	ENSGT00940000157069.c #22	ENSGT00390000007230.b.d #23	ENSGT00390000012388.c	ENSGT00940000159548.m	ENSGT00940000154678.a.a.m.b	ENSGT00530000064267.n	ENSGT00940000165615.b	ENSGT00940000156017.fb	ENSGT00560000077266.b.o	ENSGT00940000159847.f.a.a	ENSGT00940000165905	ENSGT00950000183107.a.b.a.e.b	ENSGT00940000153259.a.a.b.g.b	ENSGT00390000016695.u	ENSGT00940000159187.k.a	ENSGT00390000004856.o.b
Oncorhynchus_a	ANCESTRAL SPECIES	25	ENSGT00940000155457.a.b.h	ENSGT01050000244814.a.a.b.b.b.b.a.d	ENSGT00950000183206.a.b.a.a.b.c.b.b	ENSGT00940000164443.b.b	ENSGT00940000166822.b	ENSGT00950000183068.a.b.d.c	ENSGT00940000156527.d.d	ENSGT00940000156881.g.c	ENSGT00940000157408.a.b.c	ENSGT00530000063516.a.a.a.b.d	ENSGT01030000234582.f.a.b.p.a	ENSGT00530000063947.C.c.d	ENSGT00870000136508.c.b.h	ENSGT00390000013680.b.b.k.b #19	ENSGT00940000155062.b.d.a.f	ENSGT00940000157069.c #22	ENSGT00390000007230.b.d #23	ENSGT00940000154308.A.b.a.a.a.a.b	ENSGT00390000012388.c	ENSGT00940000159548.m	ENSGT00940000154678.a.a.m.b	ENSGT01030000235187.b.b	ENSGT00940000165615.b	ENSGT00940000159847.f.a.a	ENSGT00940000156017.fb	ENSGT00560000077266.b.o	ENSGT00940000165905	ENSGT00950000183107.a.b.a.e.b	ENSGT00940000153259.a.a.b.g.b	ENSGT00390000016695.u	ENSGT00940000159187.k.a
Coho salmon	MODERN SPECIES	6	ENSOKIG00005024004	lim2.3 (ENSOKIG00005024196)	HSPA8 (ENSOKIG00005024212)	ENSOKIG00005024272	ENSOKIG00005024282	picalmb (ENSOKIG00005024344)	ZPLD1 (ENSOKIG00005025118)	alcamb (ENSOKIG00005025148)	dyrk1ab (ENSOKIG00005025310)	thap12b (ENSOKIG00005025487)	DGAT2 (ENSOKIG00005025492)	ENSOKIG00005025537	zgc:112083 (ENSOKIG00005025572)	med13b (ENSOKIG00005025823) #19	rps6kb1b (ENSOKIG00005026801)	tubd1 (ENSOKIG00005027110) #22	vmp1 (ENSOKIG00005027161) #23	ENSOKIG00005027360	ENSOKIG00005027440	bace2 (ENSOKIG00005027472)	DSCAM (ENSOKIG00005027691)	ENSOKIG00005028967	ENSOKIG00005028982	ENSOKIG00005029010	ENSOKIG00005029085	get1 (ENSOKIG00005029110)	ENSOKIG00005029161	MIPEP (ENSOKIG00005029922)	TNFRSF19 (ENSOKIG00005030602)	SACS (ENSOKIG00005030615)	sgcg (ENSOKIG00005030640)
Chinook salmon	MODERN SPECIES	4	ENSOTSG00005043509	lim2.3 (ENSOTSG00005043510)	HSPA8 (ENSOTSG00005043511)	ENSOTSG00005043648	ENSOTSG00005043649	ENSOTSG00005043650	picalmb (ENSOTSG00005043652)	ZPLD1 (ENSOTSG00005043656)	alcamb (ENSOTSG00005043663)	dyrk1ab (ENSOTSG00005043665)	thap12b (ENSOTSG00005043666)	ENSOTSG00005043667	zgc:112083 (ENSOTSG00005043668)	med13b (ENSOTSG00005043675) #19	rps6kb1b (ENSOTSG00005044037)	tubd1 (ENSOTSG00005044787) #22	vmp1 (ENSOTSG00005044790) #23	ENSOTSG00005044802	ENSOTSG00005044807	bace2 (ENSOTSG00005044809)	DSCAM (ENSOTSG00005044816)	ENSOTSG00005044961	ENSOTSG00005044962	sh3bgr (ENSOTSG00005044963)	get1 (ENSOTSG00005001681)	ENSOTSG00005001688	MIPEP (ENSOTSG00005001720)	ENSOTSG00005002691	tnfrsf19 (ENSOTSG00005002694)	SACS (ENSOTSG00005002699)	sgcg (ENSOTSG00005002703)
Rainbow trout	MODERN SPECIES	19	ENSOMYG00000043512	lim2.3 (ENSOMYG00000043644)	ENSOMYG00000043653	ENSOMYG00000043664	picalmb (ENSOMYG00000043978)	ENSOMYG00000045681	alcamb (ENSOMYG00000045710)	dyrk1ab (ENSOMYG00000045737)	thap12b (ENSOMYG00000045761)	ENSOMYG00000045766	ENSOMYG00000045776	ENSOMYG00000060831	zgc:112083 (ENSOMYG00000045796)	med13b (ENSOMYG00000045974) #19	rps6kb1b (ENSOMYG00000046639)	ENSOMYG00000046703 #22	vmp1 (ENSOMYG00000046712) #23	ENSOMYG00000046725	ENSOMYG00000046735	bace2 (ENSOMYG00000046757)	ENSOMYG00000046821	PCP4 (ENSOMYG00000052464)	ENSOMYG00000046904	ENSOMYG00000060063	sh3bgr (ENSOMYG00000046917)	get1 (ENSOMYG00000072139)	ENSOMYG00000046965	MIPEP (ENSOMYG00000056267)	ENSOMYG00000037542	ENSOMYG00000069171	TNFRSF19 (ENSOMYG00000047063)
Huchen	MODERN SPECIES	5597													zgc:112083 (ENSHHUG00000014774)	med13b (ENSHHUG00000014815) #19	rps6kb1b (ENSHHUG00000015167)	tubd1 (ENSHHUG00000015229) #22	vmp1 (ENSHHUG00000015238) #23
Salmoninae	ANCESTRAL SPECIES	96	ENSGT00940000155457.a.b.g	ENSGT01050000244814.a.a.b.b.b.b.a.c	ENSGT00950000183206.a.b.a.a.b.c.b.a	ENSGT00940000166822.a	ENSGT00950000183068.a.b.d.d	ENSGT00940000156527.d.c	ENSGT00940000156881.g.d	ENSGT00940000157408.a.b.d	ENSGT00530000063516.a.a.a.b.c	ENSGT01030000234582.f.a.b.p.b	ENSGT00530000063947.C.c.c	ENSGT00870000136508.c.b.g	ENSGT00940000154823.f	ENSGT00390000013680.b.b.k.a #19	ENSGT00940000155062.b.d.a.e	ENSGT00940000157069.d #22	ENSGT00390000007230.b.c #23	ENSGT00390000012388.d	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548.n	ENSGT00940000154678.a.a.m.a	ENSGT01030000235187.b.a	ENSGT00390000012388.c	ENSGT00940000159548.m	ENSGT00940000154678.a.a.m.b	ENSGT00530000064267	ENSGT00940000159847.e	ENSGT00940000165615.b	ENSGT00940000159847.f.b	ENSGT00560000077266.b.o
Salmoninae_a	ANCESTRAL SPECIES	3	ENSGT01050000244814.a.a.b.b.b.b.a.c	ENSGT00950000183206.a.b.a.a.b.c.b.a	ENSGT00940000166822.a	ENSGT00950000183068.a.b.d.d	ENSGT00940000156527.d.c	ENSGT00940000156881.g.d	ENSGT00940000157408.a.b.d	ENSGT00530000063516.a.a.a.b.c	ENSGT01030000234582.f.a.b.p.b	ENSGT00530000063947.C.c.c	ENSGT00870000136508.c.b.g	ENSGT00940000154823.f	ENSGT00390000013680.b.b.k.a #19	ENSGT00940000155062.b.d.a.e	ENSGT00940000154203 #21	ENSGT00940000157069.d #22	ENSGT00390000007230.b.c #23	ENSGT00940000154308.A.b.a.a.a.a	ENSGT00390000012388.d	ENSGT00670000098061	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548.n	ENSGT00940000154678.a.a.m.a	ENSGT00530000064267.m	ENSGT00940000159847.e	ENSGT00940000159847.f.a.b	ENSGT00560000077266.b.p	ENSGT00390000008610.a.b.a.a.b.b	ENSGT00950000183107.a.b.a.e.b	ENSGT00390000008610.a.b.a.a.b.a	ENSGT00950000183107.a.b.a.e.a
Salmo	ANCESTRAL SPECIES	22	ENSGT01050000244814.a.a.b.b.b.b.a.c	ENSGT00950000183206.a.b.a.a.b.c.b.a	ENSGT00940000166822.a	ENSGT00950000183068.a.b.d.d	ENSGT00940000156527.d.c	ENSGT00940000156881.g.d	ENSGT00940000157408.a.b.d	ENSGT00530000063516.a.a.a.b.c	ENSGT01030000234582.f.a.b.p.b	ENSGT00530000063947.C.c.c	ENSGT00870000136508.c.b.g	ENSGT00940000154823.f	ENSGT00390000013680.b.b.k.a #19	ENSGT00940000155062.b.d.a.e	ENSGT00940000154203 #21	ENSGT00940000157069.d #22	ENSGT00390000007230.b.c #23	ENSGT00940000154308.A.b.a.a.a.a	ENSGT00390000012388.d	ENSGT00670000098061.ec	ENSGT00940000155207.a.b.i.b	ENSGT00940000159548.n	ENSGT00940000154678.a.a.m.a	ENSGT00530000064267.m	ENSGT00940000159847.e	ENSGT00560000077266.b.p	ENSGT00390000008610.a.b.a.a.b.a	ENSGT00950000183107.a.b.a.e.a	ENSGT00940000153259.a.a.b.g.a	ENSGT00390000016695.v	ENSGT00940000159187.k.b
Atlantic salmon	MODERN SPECIES	28	ENSSSAG00000075060	lim2.3 (ENSSSAG00000075085)	ENSSSAG00000075123	ENSSSAG00000075511	picalmb (ENSSSAG00000075547)	ENSSSAG00000075728	alcamb (ENSSSAG00000075750)	ENSSSAG00000116014	dyrk1ab (ENSSSAG00000076119)	thap12b (ENSSSAG00000076164)	ENSSSAG00000092074	zgc:112083 (ENSSSAG00000076178)	ENSSSAG00000037680	med13b (ENSSSAG00000075846) #19	RPS6KB1 (ENSSSAG00000076163) #21	ENSSSAG00000039970 #22	VMP1 (ENSSSAG00000040043) #23	ENSSSAG00000040316	ENSSSAG00000040367	atm (ENSSSAG00000040756)	ENSSSAG00000098217	bace2 (ENSSSAG00000047471)	DSCAM (ENSSSAG00000048521)	pcp4 (ENSSSAG00000121956)	sh3bgr (ENSSSAG00000050776)	LCA5L (ENSSSAG00000050807)	WRB (ENSSSAG00000050810)	BRWD1 (ENSSSAG00000051173)	ENSSSAG00000065588	ENSSSAG00000077967	trappc4 (ENSSSAG00000094815)
River trout	MODERN SPECIES	4	ENSSTUG00000046504	lim2.3 (ENSSTUG00000046958)	ENSSTUG00000046963	ENSSTUG00000046985	picalmb (ENSSTUG00000047043)	ZPLD1 (ENSSTUG00000047423)	alcamb (ENSSTUG00000047456)	dyrk1ab (ENSSTUG00000047725)	thap12b (ENSSTUG00000047763)	DGAT2 (ENSSTUG00000047767)	ENSSTUG00000047771	zgc:112083 (ENSSTUG00000047772)	ENSSTUG00000047778	med13b (ENSSTUG00000047840) #19	rps6kb1b (ENSSTUG00000048572)	tubd1 (ENSSTUG00000048781) #22	vmp1 (ENSSTUG00000048793) #23	ENSSTUG00000048843	ENSSTUG00000048847	ATM (ENSSTUG00000048910)	TMPRSS2 (ENSSTUG00000049766)	bace2 (ENSSTUG00000049778)	DSCAM (ENSSTUG00000049801)	PCP4 (ENSSTUG00000029546)	sh3bgr (ENSSTUG00000029565)	ENSSTUG00000029610	GET1 (ENSSTUG00000029614)	BRWD1 (ENSSTUG00000029657)	tnfrsf19 (ENSSTUG00000030193)	SACS (ENSSTUG00000030213)	sgcg (ENSSTUG00000030248)
Oncorhynchus	ANCESTRAL SPECIES	14	ENSGT00940000155457.a.b.g	ENSGT01050000244814.a.a.b.b.b.b.a.c	ENSGT00950000183206.a.b.a.a.b.c.b.a	ENSGT00940000166822.a	ENSGT00950000183068.a.b.d.d	ENSGT00940000156527.d.c	ENSGT00940000156881.g.d	ENSGT00940000157408.a.b.d	ENSGT00530000063516.a.a.a.b.c	ENSGT01030000234582.f.a.b.p.b	ENSGT00530000063947.C.c.c	ENSGT00870000136508.c.b.g	ENSGT00940000154823.f	ENSGT00390000013680.b.b.k.a #19	ENSGT00940000155062.b.d.a.e	ENSGT00940000157069.d #22	ENSGT00390000007230.b.c #23	ENSGT00940000154308.A.b.a.a.a.a	ENSGT00390000012388.d	ENSGT00670000098061	ENSGT00940000159548.n	ENSGT00940000154678.a.a.m.a	ENSGT00530000064267.m	ENSGT00940000159847.f.a.b	ENSGT00560000077266.b.p	ENSGT00390000008610.a.b.a.a.b.b	ENSGT00950000183107.a.b.a.e.a	ENSGT00940000153259.a.a.b.g.a	ENSGT00390000016695.v	ENSGT00940000159187.k.b	ENSGT00390000004856.o.a
Oncorhynchus_a	ANCESTRAL SPECIES	32	ENSGT00940000157231.a.b.c	ENSGT00940000155457.a.b.g	ENSGT01050000244814.a.a.b.b.b.b.a.c	ENSGT00950000183206.a.b.a.a.b.c.b.a	ENSGT00940000166822.a	ENSGT00950000183068.a.b.d.d	ENSGT00940000156527.d.c	ENSGT00940000156881.g.d	ENSGT00940000157408.a.b.d	ENSGT00530000063516.a.a.a.b.c	ENSGT01030000234582.f.a.b.p.b	ENSGT00530000063947.C.c.c	ENSGT00940000154823.f	ENSGT00390000013680.b.b.k.a #19	ENSGT00940000155062.b.d.a.e	ENSGT00940000157069.d #22	ENSGT00390000007230.b.c #23	ENSGT00940000154308.A.b.a.a.a.a.a	ENSGT00390000012388.d	ENSGT00670000098061	ENSGT00940000159548.n	ENSGT00940000154678.a.a.m.a	ENSGT00530000064267.m	ENSGT00940000159847.f.a.b	ENSGT00560000077266.b.p	ENSGT00390000008610.a.b.a.a.b.b	ENSGT00950000183107.a.b.a.e.a	ENSGT00940000153259.a.a.b.g.a	ENSGT00390000016695.v	ENSGT00940000159187.k.b	ENSGT00390000004856.o.a
Chinook salmon	MODERN SPECIES	5	ENSOTSG00005012306	ENSOTSG00005012309	HSPA8 (ENSOTSG00005012311)	ENSOTSG00005012313	picalmb (ENSOTSG00005012322)	ZPLD1 (ENSOTSG00005012832)	alcamb (ENSOTSG00005012833)	dyrk1ab (ENSOTSG00005012840)	thap12b (ENSOTSG00005012841)	DGAT2 (ENSOTSG00005012842)	ENSOTSG00005012843	ENSOTSG00005012844	ENSOTSG00005012845	MED13 (ENSOTSG00005012848) #19	rps6kb1b (ENSOTSG00005012975)	ENSOTSG00005013044 #22	vmp1 (ENSOTSG00005013046) #23	ENSOTSG00005013068	ENSOTSG00005013069	ENSOTSG00005013070	ATM (ENSOTSG00005013089)	ENSOTSG00005013109	bace2 (ENSOTSG00005013111)	DSCAM (ENSOTSG00005013132)	ENSOTSG00005014594	sh3bgr (ENSOTSG00005014599)	ENSOTSG00005014604	GET1 (ENSOTSG00005014606)	ENSOTSG00005014611	tnfrsf19 (ENSOTSG00005014683)	SACS (ENSOTSG00005014685)
Huchen	MODERN SPECIES	646	ENSHHUG00000044471	lim2.3 (ENSHHUG00000044460)	ENSHHUG00000042836	ENSHHUG00000042808	picalmb (ENSHHUG00000042750)	ZPLD1 (ENSHHUG00000042720)	alcamb (ENSHHUG00000042593)	dyrk1ab (ENSHHUG00000042582)	thap12b (ENSHHUG00000042575)	ENSHHUG00000042572	ENSHHUG00000042547	zgc:112083 (ENSHHUG00000042534)	ENSHHUG00000042515	med13b (ENSHHUG00000042143) #19	rps6kb1b (ENSHHUG00000042066)	tubd1 (ENSHHUG00000042054) #22	vmp1 (ENSHHUG00000042032) #23	ENSHHUG00000042026	ENSHHUG00000042013	ENSHHUG00000042012	ENSHHUG00000041994	ATM (ENSHHUG00000041950)	ENSHHUG00000041920	bace2 (ENSHHUG00000041902)	ENSHHUG00000041872	ENSHHUG00000041865
Northern pike	MODERN SPECIES		ENSELUG00000020146	lim2.3 (ENSELUG00000020108)	HSPA8 (ENSELUG00000020135)	ENSELUG00000020088	picalmb (ENSELUG00000019993)	ZPLD1 (ENSELUG00000019686)	alcamb (ENSELUG00000019643)	dyrk1ab (ENSELUG00000019596)	thap12b (ENSELUG00000019554)	DGAT2 (ENSELUG00000019544)	ENSELUG00000019513	zgc:112083 (ENSELUG00000019494)	ENSELUG00000019466	med13b (ENSELUG00000019446) #19	rps6kb1b (ENSELUG00000019321)	tubd1 (ENSELUG00000019274) #22	vmp1 (ENSELUG00000019247) #23	ENSELUG00000019191	ATM (ENSELUG00000019146)	bace2 (ENSELUG00000018655)	DSCAM (ENSELUG00000018635)	ENSELUG00000031958	PCP4 (ENSELUG00000029251)	sh3bgr (ENSELUG00000018547)	ENSELUG00000018496	GET1 (ENSELUG00000018486)	BRWD1 (ENSELUG00000018454)	MIPEP (ENSELUG00000018354)	tnfrsf19 (ENSELUG00000018329)	SACS (ENSELUG00000018309)	sgcg (ENSELUG00000018259)
Osteoglossiformes	ANCESTRAL SPECIES	31	ENSGT00940000159975	ENSGT00940000179338	ENSGT00940000161028.n.a	ENSGT00390000016511	ENSGT00530000063764.a	ENSGT00940000157890	ENSGT00940000159908	ENSGT00390000002429	ENSGT00950000182952.A.b	ENSGT00940000154829.i.a	ENSGT00940000154823	ENSGT00390000011888 #18	ENSGT00390000013680.b.a #19	ENSGT00940000156740 #20	ENSGT00940000155062.b	ENSGT00940000157069 #22	ENSGT00950000183166.a.a.a.b.e.a ##25	ENSGT00940000158902 #26	ENSGT00730000113168	ENSGT00940000161532.a	ENSGT00940000161532.b	ENSGT01020000230351.E.c	ENSGT00530000063811.A.a.b	ENSGT00560000077232.B.h	ENSGT00840000129887.h	ENSGT00940000157044.t
P. kingsleyae	MODERN SPECIES	387													ENSPKIG00000012548	zgc:112083 (ENSPKIG00000012562)	ENSPKIG00000012596	tubd1 (ENSPKIG00000012615) #22	cltcb (ENSPKIG00000012721) ##25	ENSPKIG00000012985	DHX40 (ENSPKIG00000013016) #26	ENSPKIG00000013055	ENSPKIG00000013080	p2rx8 (ENSPKIG00000013160)	FAM222B (ENSPKIG00000013238)	FLOT2 (ENSPKIG00000013264)	DHRS11 (ENSPKIG00000013307)	VKORC1L1 (ENSPKIG00000013330)	ENSPKIG00000013353	YWHAG (ENSPKIG00000013387)	HSPB1 (ENSPKIG00000013403)
Asian bonytongue	MODERN SPECIES	1	ENSSFOG00015026160	ENSSFOG00015027061	ENSSFOG00015017017	ENSSFOG00015033161	pid1 (ENSSFOG00015029680)	dner (ENSSFOG00015002483)	thap12b (ENSSFOG00015025519)	ENSSFOG00015024974	ZBTB21 (ENSSFOG00015025479)	zgc:112083 (ENSSFOG00015002582)	ENSSFOG00015025900	ZBTB21 (ENSSFOG00015032112)	zgc:112083 (ENSSFOG00015031442)	MED13 (ENSSFOG00015002623) #19	rps6kb1b (ENSSFOG00015002745)	tubd1 (ENSSFOG00015002798) #22	ENSSFOG00015025392	cltcb (ENSSFOG00015002844) ##25	DHX40 (ENSSFOG00015003020) #26	or40a1 (ENSSFOG00015003063)	ENSSFOG00015003120	ENSSFOG00015003134	or71ar1 (ENSSFOG00015003144)	or71aq1 (ENSSFOG00015003193)	ENSSFOG00015028915	rhogb (ENSSFOG00015029302)	stim1a (ENSSFOG00015003330)	ENSSFOG00015003337	ENSSFOG00015003369	robo2 (ENSSFOG00015003444)	ROBO1 (ENSSFOG00015003720)
Spotted gar	MODERN SPECIES	661	adora2b (ENSLOCG00000003553)	SPECC1 (ENSLOCG00000003564)	TIMM22 (ENSLOCG00000003575)	abr (ENSLOCG00000003587)	ENSLOCG00000003616	ENSLOCG00000003633	aspa (ENSLOCG00000003642)	ENSLOCG00000003659	ENSLOCG00000003673	AKAP10 (ENSLOCG00000003685)	ints2 (ENSLOCG00000003709) #18	med13b (ENSLOCG00000003727) #19	ENSLOCG00000003767	rnft1 (ENSLOCG00000003795) #20	rps6kb1b (ENSLOCG00000003823)	tubd1 (ENSLOCG00000003847) #22	vmp1 (ENSLOCG00000003867) #23	ptrh2 (ENSLOCG00000017426) #24	cltca (ENSLOCG00000003892) ##25	DHX40 (ENSLOCG00000003916) #26	ENSLOCG00000003933	zgc:85789 (ENSLOCG00000003948)	ENSLOCG00000003962	AUTS2 (ENSLOCG00000003979)	GALNT17 (ENSLOCG00000003993)	CALN1 (ENSLOCG00000004017)	tyw1 (ENSLOCG00000004035)	sbds (ENSLOCG00000004073)	nf2b (ENSLOCG00000004088)	mrps17 (ENSLOCG00000004118)	NIPSNAP2 (ENSLOCG00000004134)
Reedfish	MODERN SPECIES	16	ENSECRG00000009099	NCOR1 (ENSECRG00000009114)	zswim7 (ENSECRG00000009135)	adora2b (ENSECRG00000009144)	SPECC1 (ENSECRG00000009157)	TIMM22 (ENSECRG00000009193)	ABR (ENSECRG00000009333)	aspa (ENSECRG00000009575)	ENSECRG00000009586	ENSECRG00000009599	AKAP10 (ENSECRG00000009614)	ints2 (ENSECRG00000009696) #18	ENSECRG00000009817 #19	rnft1 (ENSECRG00000009822) #20	rps6kb1b (ENSECRG00000009842)	tubd1 (ENSECRG00000009859) #22	vmp1 (ENSECRG00000009872) #23	ptrh2 (ENSECRG00000009891) #24	ENSECRG00000009941 ##25	DHX40 (ENSECRG00000010026) #26	ENSECRG00000010053	zgc:85789 (ENSECRG00000010068)	ENSECRG00000010079	AUTS2 (ENSECRG00000010102)	GALNT17 (ENSECRG00000010128)	CALN1 (ENSECRG00000010148)	tyw1 (ENSECRG00000010163)	sbds (ENSECRG00000010179)	nf2b (ENSECRG00000010195)	mrps17 (ENSECRG00000010225)	NIPSNAP2 (ENSECRG00000010247)
Elephant shark	MODERN SPECIES	1732						romo1 (ENSCMIG00000018606)	ergic3 (ENSCMIG00000018593)	cyc1 (ENSCMIG00000018580)	st3gal8 (ENSCMIG00000018557)	ENSCMIG00000018545	osgn1 (ENSCMIG00000018541)	eif6 (ENSCMIG00000018539)	MMP24 (ENSCMIG00000018482)	MYH7B (ENSCMIG00000017871)	trpc4apa (ENSCMIG00000017450)	tubd1 (ENSCMIG00000017425) #22	ENSCMIG00000017420	ahcy (ENSCMIG00000017403)	ENSCMIG00000017393	eif2s2 (ENSCMIG00000017384)	raly (ENSCMIG00000017380)	chmp4ba (ENSCMIG00000017374)	znf341 (ENSCMIG00000017372)	ENSCMIG00000017355	fam83c (ENSCMIG00000017342)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000157069 #22
Lamprey	MODERN SPECIES	4881																tubd1 (ENSPMAG00000003124) #22
Hagfish	MODERN SPECIES	1198																tubd1 (ENSEBUG00000009456) #22	ENSEBUG00000010522 #20	ENSEBUG00000008078	ENSEBUG00000001306	ENSEBUG00000005371	ENSEBUG00000006920
Ciona	ANCESTRAL SPECIES																	ENSGT00940000157069 #22
Ciona intestinalis	MODERN SPECIES	12	ENSCING00000025153	ENSCING00000020836	neuralized-b (ENSCING00000008074)	ENSCING00000013320	ENSCING00000024850	ENSCING00000013319	ENSCING00000023535	ENSCING00000000854	zf(bbox/ring)-1 (ENSCING00000013322)	ENSCING00000000567	ENSCING00000024187	ENSCING00000024965	ENSCING00000017927	ENSCING00000008073	ENSCING00000008016	ENSCING00000021815 #22	ENSCING00000023036	ENSCING00000008020	ENSCING00000013325	ENSCING00000019722	ENSCING00000013324	ENSCING00000008025	ENSCING00000024403	ENSCING00000008030	ENSCING00000024018	ENSCING00000008072	ENSCING00000019133	ENSCING00000008010	ENSCING00000008012	ENSCING00000016347	ENSCING00000008008