Murinae	ANCESTRAL SPECIES	3	ENSGT00940000159076 #8	ENSGT00940000154960 #9	ENSGT00940000162454 #10	ENSGT00960000189448	ENSGT00940000156055 #11	ENSGT01020000230359.C.a.a.b #12	ENSGT00530000063564.a #13	ENSGT00800000124177 #14	ENSGT00950000182812.E #15	ENSGT00940000153370.b #16	ENSGT00940000159476 #17	ENSGT00950000183092.b.b #18	ENSGT00940000160796 #19	ENSGT01100000263856 #20	ENSGT00940000155574.C #21	ENSGT00940000156148 #22	ENSGT00940000153845.a.b #23	ENSGT00390000009163 #24	ENSGT00940000153814.a #26	ENSGT00390000010260 #28	ENSGT00950000182942.a.a #27	ENSGT01020000230359.C.b #29	ENSGT00940000159099 #30	ENSGT00390000001827 #31	ENSGT00390000008295.b #32	ENSGT00940000157911 #33	ENSGT00510000048725 #34	ENSGT00940000160520 #35	ENSGT00390000003114.e.b.b.r #36	ENSGT00940000157880 #37	ENSGT00940000155488
Mus	ANCESTRAL SPECIES	4	ENSGT00940000159076 #8	ENSGT00940000154960 #9	ENSGT00940000162454 #10	ENSGT00960000189448	ENSGT00940000156055 #11	ENSGT01020000230359.C.a.a.b #12	ENSGT00530000063564.a #13	ENSGT00800000124177 #14	ENSGT00950000182812.E #15	ENSGT00940000153370.b #16	ENSGT00940000159476 #17	ENSGT00950000183092.b.b #18	ENSGT00940000160796 #19	ENSGT01100000263856 #20	ENSGT00940000155574.C #21	ENSGT00940000156148 #22	ENSGT00940000153845.a.b #23	ENSGT00390000009163 #24	ENSGT00940000153814.a #26	ENSGT00950000182942.a.a #27	ENSGT00390000010260 #28	ENSGT01020000230359.C.b #29	ENSGT00940000159099 #30	ENSGT00390000001827 #31	ENSGT00390000008295.b #32	ENSGT00940000157911 #33	ENSGT00510000048725 #34	ENSGT00940000160520 #35	ENSGT00390000003114.e.b.b.r #36	ENSGT00940000157880 #37	ENSGT00940000155488
Mus_A	ANCESTRAL SPECIES	4	ENSGT00940000159076 #8	ENSGT00940000154960 #9	ENSGT00940000162454 #10	ENSGT00960000189448	ENSGT00940000156055 #11	ENSGT01020000230359.C.a.a.b #12	ENSGT00530000063564.a #13	ENSGT00800000124177 #14	ENSGT00950000182812.E #15	ENSGT00940000153370.b #16	ENSGT00940000159476 #17	ENSGT00950000183092.b.b #18	ENSGT00940000160796 #19	ENSGT01100000263856 #20	ENSGT00940000155574.C #21	ENSGT00940000156148 #22	ENSGT00940000153845.a.b #23	ENSGT00390000009163 #24	ENSGT00940000153814.a #26	ENSGT00950000182942.a.a #27	ENSGT00390000010260 #28	ENSGT01020000230359.C.b #29	ENSGT00940000159099 #30	ENSGT00390000001827 #31	ENSGT00390000008295.b #32	ENSGT00940000157911 #33	ENSGT00510000048725 #34	ENSGT00940000160520 #35	ENSGT00390000003114.e.b.b.r #36	ENSGT00940000157880 #37	ENSGT00940000155488
Mus_B	ANCESTRAL SPECIES	3	ENSGT00940000159076 #8	ENSGT00940000154960 #9	ENSGT00940000162454 #10	ENSGT00960000189448	ENSGT00940000156055 #11	ENSGT01020000230359.C.a.a.b #12	ENSGT00530000063564.a #13	ENSGT00800000124177 #14	ENSGT00950000182812.E #15	ENSGT00940000153370.b #16	ENSGT00940000159476 #17	ENSGT00950000183092.b.b #18	ENSGT00940000160796 #19	ENSGT01100000263856 #20	ENSGT00940000155574.C #21	ENSGT00940000156148 #22	ENSGT00940000153845.a.b #23	ENSGT00390000009163 #24	ENSGT00940000153814.a #26	ENSGT00950000182942.a.a #27	ENSGT00390000010260 #28	ENSGT01020000230359.C.b #29	ENSGT00940000159099 #30	ENSGT00390000001827 #31	ENSGT00390000008295.b #32	ENSGT00940000157911 #33	ENSGT00510000048725 #34	ENSGT00940000160520 #35	ENSGT00390000003114.e.b.b.r #36	ENSGT00940000157880 #37	ENSGT00940000155488
Mouse	MODERN SPECIES	18	Fam240a (ENSMUSG00000096393) #7	Tdgf1 (ENSMUSG00000032494) #8	Lrrc2 (ENSMUSG00000032495) #9	Rtp3 (ENSMUSG00000066319) #10	Ltf (ENSMUSG00000032496) #11	Ccrl2 (ENSMUSG00000043953) #12	Lrrfip2 (ENSMUSG00000032497) #13	Mlh1 (ENSMUSG00000032498) #14	Epm2aip1 (ENSMUSG00000046785) #15	Trank1 (ENSMUSG00000062296) #16	Dclk3 (ENSMUSG00000032500) #17	Stac (ENSMUSG00000032502) #18	Arpp21 (ENSMUSG00000032503) #19	Pdcd6ip (ENSMUSG00000032504) #20	Clasp2 (ENSMUSG00000033392) #21	Ubp1 (ENSMUSG00000009741) #22	Fbxl2 (ENSMUSG00000032507) #23	Susd5 (ENSMUSG00000086596) #24	Bcl2a1c (ENSMUSG00000053820) #25	Crtap (ENSMUSG00000032431) #26	Glb1 (ENSMUSG00000045594) #27	Tmppe (ENSMUSG00000079260) #28	Ccr4 (ENSMUSG00000047898) #29	Trim71 (ENSMUSG00000079259) #30	Cnot10 (ENSMUSG00000056167) #31	Dync1li1 (ENSMUSG00000032435) #32	Cmtm6 (ENSMUSG00000032434) #33	Cmtm7 (ENSMUSG00000032436) #34	Cmtm8 (ENSMUSG00000041012) #35	Gpd1l (ENSMUSG00000050627) #36	Osbpl10 (ENSMUSG00000040875) #37
Mus_C	ANCESTRAL SPECIES	23	ENSGT00940000159076 #8	ENSGT00940000154960 #9	ENSGT00940000162454 #10	ENSGT00960000189448	ENSGT00940000156055 #11	ENSGT01020000230359.C.a.a.b #12	ENSGT00530000063564.a #13	ENSGT00800000124177 #14	ENSGT00950000182812.E #15	ENSGT00940000153370.b #16	ENSGT00940000159476 #17	ENSGT00950000183092.b.b #18	ENSGT00940000160796 #19	ENSGT01100000263856 #20	ENSGT00940000155574.C #21	ENSGT00940000156148 #22	ENSGT00940000153845.a.b #23	ENSGT00390000009163 #24	ENSGT00940000153814.a #26	ENSGT00950000182942.a.a #27	ENSGT00390000010260 #28	ENSGT01020000230359.C.b #29	ENSGT00940000159099 #30	ENSGT00390000001827 #31	ENSGT00390000008295.b #32	ENSGT00940000157911 #33	ENSGT00510000048725 #34	ENSGT00940000160520 #35	ENSGT00390000003114.e.b.b.r #36	ENSGT00940000157880 #37	ENSGT00940000155488
spretus	MODERN SPECIES	18	Fam240a (MGP_SPRETEiJ_G0033896) #7	Tdgf1 (MGP_SPRETEiJ_G0033897) #8	Lrrc2 (MGP_SPRETEiJ_G0033898) #9	MGP_SPRETEiJ_G0033899 #10	Ltf (MGP_SPRETEiJ_G0033900) #11	Ccrl2 (MGP_SPRETEiJ_G0033901) #12	MGP_SPRETEiJ_G0033902 #13	Mlh1 (MGP_SPRETEiJ_G0033903) #14	Epm2aip1 (MGP_SPRETEiJ_G0033904) #15	Trank1 (MGP_SPRETEiJ_G0033905) #16	Dclk3 (MGP_SPRETEiJ_G0033906) #17	Stac (MGP_SPRETEiJ_G0033907) #18	Arpp21 (MGP_SPRETEiJ_G0033908) #19	Pdcd6ip (MGP_SPRETEiJ_G0033909) #20	Clasp2 (MGP_SPRETEiJ_G0033910) #21	Ubp1 (MGP_SPRETEiJ_G0033911) #22	Fbxl2 (MGP_SPRETEiJ_G0033912) #23	Susd5 (MGP_SPRETEiJ_G0033913) #24	Crtap (MGP_SPRETEiJ_G0033914) #26	Glb1 (MGP_SPRETEiJ_G0033915) #27	Tmppe (MGP_SPRETEiJ_G0033916) #28	Ccr4 (MGP_SPRETEiJ_G0033917) #29	Trim71 (MGP_SPRETEiJ_G0033918) #30	MGP_SPRETEiJ_G0033919	Cnot10 (MGP_SPRETEiJ_G0033920) #31	Dync1li1 (MGP_SPRETEiJ_G0033921) #32	Cmtm6 (MGP_SPRETEiJ_G0033922) #33	Cmtm7 (MGP_SPRETEiJ_G0033923) #34	Cmtm8 (MGP_SPRETEiJ_G0033924) #35	Gpd1l (MGP_SPRETEiJ_G0033925) #36	Osbpl10 (MGP_SPRETEiJ_G0033926) #37
Steppe mouse	MODERN SPECIES	3088													Arpp21 (ENSMSIG00000028251) #19	Pdcd6ip (ENSMSIG00000028422) #20	Clasp2 (ENSMSIG00000028452) #21	Ubp1 (ENSMSIG00000028689) #22	Fbxl2 (ENSMSIG00000028716) #23	Susd5 (ENSMSIG00000028735) #24
Ryukyu mouse	MODERN SPECIES	18	MGP_CAROLIEiJ_G0032749	Lrrc2 (MGP_CAROLIEiJ_G0032750) #9	MGP_CAROLIEiJ_G0032751 #10	Ltf (MGP_CAROLIEiJ_G0032752) #11	Ccrl2 (MGP_CAROLIEiJ_G0032753) #12	Lrrfip2 (MGP_CAROLIEiJ_G0032754) #13	Mlh1 (MGP_CAROLIEiJ_G0032755) #14	Epm2aip1 (MGP_CAROLIEiJ_G0032756) #15	Trank1 (MGP_CAROLIEiJ_G0032757) #16	Dclk3 (MGP_CAROLIEiJ_G0032758) #17	Stac (MGP_CAROLIEiJ_G0032759) #18	Arpp21 (MGP_CAROLIEiJ_G0032760) #19	Pdcd6ip (MGP_CAROLIEiJ_G0032762) #20	MGP_CAROLIEiJ_G0032763 #21	Clasp2 (MGP_CAROLIEiJ_G0032764) #21	Ubp1 (MGP_CAROLIEiJ_G0032765) #22	MGP_CAROLIEiJ_G0032766	Susd5 (MGP_CAROLIEiJ_G0032767) #24	Glb1 (MGP_CAROLIEiJ_G0032768) #27	Tmppe (MGP_CAROLIEiJ_G0032769) #28	Ccr4 (MGP_CAROLIEiJ_G0032770) #29	Trim71 (MGP_CAROLIEiJ_G0032771) #30	MGP_CAROLIEiJ_G0032772	Cnot10 (MGP_CAROLIEiJ_G0032773) #31	Dync1li1 (MGP_CAROLIEiJ_G0032774) #32	Cmtm6 (MGP_CAROLIEiJ_G0032775) #33	Cmtm7 (MGP_CAROLIEiJ_G0032776) #34	Cmtm8 (MGP_CAROLIEiJ_G0032777) #35	Gpd1l (MGP_CAROLIEiJ_G0032778) #36	Osbpl10 (MGP_CAROLIEiJ_G0032779) #37	Stt3b (MGP_CAROLIEiJ_G0032780)
Shrew mouse	MODERN SPECIES	1	MGP_PahariEiJ_G0015616 #8	Lrrc2 (MGP_PahariEiJ_G0015617) #9	MGP_PahariEiJ_G0015618 #10	Ltf (MGP_PahariEiJ_G0015619) #11	Ccrl2 (MGP_PahariEiJ_G0015620) #12	MGP_PahariEiJ_G0015621 #13	Mlh1 (MGP_PahariEiJ_G0015622) #14	Epm2aip1 (MGP_PahariEiJ_G0015623) #15	Trank1 (MGP_PahariEiJ_G0015624) #16	Dclk3 (MGP_PahariEiJ_G0015625) #17	Stac (MGP_PahariEiJ_G0015626) #18	Arpp21 (MGP_PahariEiJ_G0015627) #19	Pdcd6ip (MGP_PahariEiJ_G0015628) #20	MGP_PahariEiJ_G0015629 #21	Clasp2 (MGP_PahariEiJ_G0015630) #21	Ubp1 (MGP_PahariEiJ_G0015631) #22	MGP_PahariEiJ_G0015632	Susd5 (MGP_PahariEiJ_G0015633) #24	Crtap (MGP_PahariEiJ_G0015634) #26	Glb1 (MGP_PahariEiJ_G0015635) #27	Tmppe (MGP_PahariEiJ_G0015636) #28	Ccr4 (MGP_PahariEiJ_G0015637) #29	Trim71 (MGP_PahariEiJ_G0015638) #30	MGP_PahariEiJ_G0015639	Cnot10 (MGP_PahariEiJ_G0015640) #31	Dync1li1 (MGP_PahariEiJ_G0015641) #32	Cmtm6 (MGP_PahariEiJ_G0015642) #33	Cmtm7 (MGP_PahariEiJ_G0015643) #34	Cmtm8 (MGP_PahariEiJ_G0015644) #35	Gpd1l (MGP_PahariEiJ_G0015645) #36	Osbpl10 (MGP_PahariEiJ_G0015646) #37
Rat	MODERN SPECIES	18	Lrrc2 (ENSRNOG00000030688) #9	Rtp3 (ENSRNOG00000037167) #10	AC132539.3 (ENSRNOG00000052063)	RGD1565653 (ENSRNOG00000062517)	Ltf (ENSRNOG00000031779) #11	Ccrl2 (ENSRNOG00000033234) #12	Lrrfip2 (ENSRNOG00000021047) #13	Mlh1 (ENSRNOG00000033809) #14	Epm2aip1 (ENSRNOG00000043006) #15	Trank1 (ENSRNOG00000021091) #16	Dclk3 (ENSRNOG00000033026) #17	Stac (ENSRNOG00000008865) #18	Arpp21 (ENSRNOG00000008919) #19	Pdcd6ip (ENSRNOG00000008981) #20	Clasp2 (ENSRNOG00000009161) #21	Ubp1 (ENSRNOG00000009729) #22	Fbxl2 (ENSRNOG00000027099) #23	ENSRNOG00000070154	Susd5 (ENSRNOG00000026951) #24	Crtap (ENSRNOG00000009878) #26	Tmppe (ENSRNOG00000066638) #28	Glb1 (ENSRNOG00000010196) #27	Ccr4 (ENSRNOG00000010315) #29	Trim71 (ENSRNOG00000030098) #30	Cnot10 (ENSRNOG00000052305) #31	Dync1li1 (ENSRNOG00000010434) #32	Cmtm6 (ENSRNOG00000010951) #33	Cmtm7 (ENSRNOG00000067317) #34	Cmtm8 (ENSRNOG00000011201) #35	Gpd1l (ENSRNOG00000026455) #36	Osbpl10 (ENSRNOG00000011435) #37