Rodentia_A	ANCESTRAL SPECIES	2	ENSGT01020000230346.A	ENSGT00390000007753.b	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a	ENSGT01050000244902.b.c.b	ENSGT00940000157901 #13	ENSGT00390000005163 #14	ENSGT01100000263497.C #15	ENSGT00940000155517 #16	ENSGT00940000155959 #17	ENSGT00940000154071.A #18	ENSGT00950000183148.a #19	ENSGT00940000161597 #20	ENSGT00660000095541.a.b #21	ENSGT00940000156106 #22	ENSGT00940000158704 #23	ENSGT00940000158072 #24	ENSGT00940000159132.a #25	ENSGT00940000156502 #26	ENSGT00490000043421 #27	ENSGT00940000158324 #28	ENSGT00940000157135 #29	ENSGT00940000156593 #30	ENSGT00390000018516 #31	ENSGT00940000157150 #32	ENSGT00940000157509 #33	ENSGT00390000012435 #34	ENSGT00510000048466 #35	ENSGT00390000007341.a	ENSGT00390000018085.a.a.a.b.b.b ##37
Sciuridae	ANCESTRAL SPECIES	8	ENSGT01020000230346.A	ENSGT00390000007753.b	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a	ENSGT01050000244902.b.c.b	ENSGT00940000157901 #13	ENSGT00390000005163 #14	ENSGT01100000263497.C #15	ENSGT00940000155517 #16	ENSGT00940000155959 #17	ENSGT00940000154071.A #18	ENSGT00950000183148.a #19	ENSGT00940000161597 #20	ENSGT00660000095541.a.b #21	ENSGT00940000156106 #22	ENSGT00940000158704 #23	ENSGT00940000158072 #24	ENSGT00940000159132.a #25	ENSGT00940000156502 #26	ENSGT00490000043421 #27	ENSGT00940000158324 #28	ENSGT00940000157135 #29	ENSGT00940000156593 #30	ENSGT00390000018516 #31	ENSGT00940000157150 #32	ENSGT00940000157509 #33	ENSGT00390000012435 #34	ENSGT00510000048466 #35	ENSGT00390000007341.a	ENSGT00940000161656 #36
Marmotini	ANCESTRAL SPECIES	15	ENSGT00940000158275	ENSGT00950000182808.a.a.b.a	ENSGT00390000018436.a.a #9	ENSGT00940000157547 #10	ENSGT00520000055955 #11	ENSGT00830000128402 #12	ENSGT00940000157901 #13	ENSGT00390000005163 #14	ENSGT01100000263497.C #15	ENSGT00940000155517 #16	ENSGT00940000155959 #17	ENSGT00940000154071.A #18	ENSGT00950000183148.a #19	ENSGT00940000161597 #20	ENSGT00660000095541.a.b #21	ENSGT00940000156106 #22	ENSGT00940000158704 #23	ENSGT00940000158072 #24	ENSGT00940000159132.a #25	ENSGT00940000156502 #26	ENSGT00490000043421 #27	ENSGT00940000158324 #28	ENSGT00940000157135 #29	ENSGT00940000156593 #30	ENSGT00390000018516 #31	ENSGT00940000157150 #32	ENSGT00940000157509 #33	ENSGT00390000012435 #34	ENSGT00510000048466 #35	ENSGT00390000007341.a	ENSGT00390000018085.a.a.a.a ##37
Marmotini_b	ANCESTRAL SPECIES	14	ENSGT00940000158275	ENSGT00950000182808.a.a.b.a	ENSGT00390000018436.a.a #9	ENSGT00940000157547 #10	ENSGT00520000055955 #11	ENSGT00830000128402.q #12	ENSGT00940000157901 #13	ENSGT00390000005163 #14	ENSGT01100000263497.C #15	ENSGT00940000155517 #16	ENSGT00940000155959 #17	ENSGT00940000154071.A #18	ENSGT00950000183148.a #19	ENSGT00940000161597 #20	ENSGT00660000095541.a.b #21	ENSGT00940000156106 #22	ENSGT00940000158704 #23	ENSGT00940000158072 #24	ENSGT00940000159132.a #25	ENSGT00940000156502 #26	ENSGT00490000043421 #27	ENSGT00940000158324 #28	ENSGT00940000157135 #29	ENSGT00940000156593 #30	ENSGT00390000018516 #31	ENSGT00940000157150 #32	ENSGT00940000157509 #33	ENSGT00390000012435 #34	ENSGT00510000048466 #35	ENSGT00390000007341.a	ENSGT00940000161656 #36
Arctic ground squirrel	MODERN SPECIES	84			SMOC1 (ENSUPAG00010001178) #9	SLC8A3 (ENSUPAG00010001266) #10	ENSUPAG00010001319 #11	ENSUPAG00010001337 #12	NID2 (ENSUPAG00010001363) #13	RTRAF (ENSUPAG00010001411) #14	GNG2 (ENSUPAG00010001421) #15	FRMD6 (ENSUPAG00010001440) #16	TMX1 (ENSUPAG00010001455) #17	TRIM9 (ENSUPAG00010001494) #18	PYGL (ENSUPAG00010001687) #19	ABHD12B (ENSUPAG00010001707) #20	NIN (ENSUPAG00010001816) #21	SAV1 (ENSUPAG00010007736) #22	ATL1 (ENSUPAG00010007750) #23	MAP4K5 (ENSUPAG00010007764) #24	CDKL1 (ENSUPAG00010007853) #25	DMAC2L (ENSUPAG00010007867) #26	L2HGDH (ENSUPAG00010007904) #27	SOS2 (ENSUPAG00010007931) #28	VCPKMT (ENSUPAG00010008108) #29	ARF6 (ENSUPAG00010008117) #30	NEMF (ENSUPAG00010008130) #31	KLHDC2 (ENSUPAG00010008179) #32	KLHDC1 (ENSUPAG00010008181) #33	POLE2 (ENSUPAG00010008225) #34	DNAAF2 (ENSUPAG00010008249) #35	ENSUPAG00010008252 #36	ENSUPAG00010008255 #37
Squirrel	MODERN SPECIES	95	ENSSTOG00000023687	SMOC1 (ENSSTOG00000003894) #9	SLC8A3 (ENSSTOG00000003907) #10	COX16 (ENSSTOG00000031505) #11	SYNJ2BP (ENSSTOG00000014437) #12	NID2 (ENSSTOG00000001067) #13	ENSSTOG00000029910 ##37	ENSSTOG00000034522 #14	GNG2 (ENSSTOG00000027320) #15	FRMD6 (ENSSTOG00000003275) #16	TMX1 (ENSSTOG00000016236) #17	TRIM9 (ENSSTOG00000011982) #18	PYGL (ENSSTOG00000011960) #19	ABHD12B (ENSSTOG00000011954) #20	NIN (ENSSTOG00000021244) #21	SAV1 (ENSSTOG00000026356) #22	ATL1 (ENSSTOG00000011921) #23	MAP4K5 (ENSSTOG00000021920) #24	CDKL1 (ENSSTOG00000028678) #25	DMAC2L (ENSSTOG00000034611) #26	L2HGDH (ENSSTOG00000011889) #27
Alpin marmot	MODERN SPECIES	1	SUSD6 (ENSMMMG00000000906)	SRSF5 (ENSMMMG00000000934)	SLC10A1 (ENSMMMG00000000980)	SMOC1 (ENSMMMG00000001018) #9	SLC8A3 (ENSMMMG00000001131) #10	COX16 (ENSMMMG00000001177) #11	ENSMMMG00000001187	NID2 (ENSMMMG00000001212) #13	RTRAF (ENSMMMG00000001263) #14	FRMD6 (ENSMMMG00000001292) #16	ENSMMMG00000001345 #17	ENSMMMG00000001375	PYGL (ENSMMMG00000001386) #19	ABHD12B (ENSMMMG00000001413) #20	NIN (ENSMMMG00000001504) #21	SAV1 (ENSMMMG00000001694) #22	ENSMMMG00000001706 #23	MAP4K5 (ENSMMMG00000001735) #24	CDKL1 (ENSMMMG00000001936) #25	DMAC2L (ENSMMMG00000001954) #26	L2HGDH (ENSMMMG00000001966) #27	SOS2 (ENSMMMG00000002005) #28	VCPKMT (ENSMMMG00000002166) #29	ARF6 (ENSMMMG00000002177) #30	NEMF (ENSMMMG00000002268) #31	KLHDC2 (ENSMMMG00000002856) #32	KLHDC1 (ENSMMMG00000002951) #33	POLE2 (ENSMMMG00000002980) #34	DNAAF2 (ENSMMMG00000003007) #35	MGAT2 (ENSMMMG00000003019)	ENSMMMG00000003026 ##37
Eurasian red squirrel	MODERN SPECIES	11	GPR137C (ENSSVLG00005006997)	TXNDC16 (ENSSVLG00005007046)	PTGER2 (ENSSVLG00005007122)	ENSSVLG00005007151	PTGDR (ENSSVLG00005007172)	NID2 (ENSSVLG00005007195) #13	RTRAF (ENSSVLG00005007221) #14	ENSSVLG00005007247	FRMD6 (ENSSVLG00005007280) #16	ENSSVLG00005007323	ENSSVLG00005007350 #17	TRIM9 (ENSSVLG00005007402) #18	PYGL (ENSSVLG00005007538) #19	ABHD12B (ENSSVLG00005007765) #20	NIN (ENSSVLG00005007948) #21	SAV1 (ENSSVLG00005008036) #22	ATL1 (ENSSVLG00005008081) #23	MAP4K5 (ENSSVLG00005008150) #24	CDKL1 (ENSSVLG00005008203) #25	DMAC2L (ENSSVLG00005008238) #26	L2HGDH (ENSSVLG00005008301) #27	SOS2 (ENSSVLG00005008363) #28	VCPKMT (ENSSVLG00005008401) #29	ARF6 (ENSSVLG00005008433) #30	NEMF (ENSSVLG00005008455) #31	KLHDC2 (ENSSVLG00005008503) #32	KLHDC1 (ENSSVLG00005008548) #33	ENSSVLG00005008574	POLE2 (ENSSVLG00005008639) #34	DNAAF2 (ENSSVLG00005008952) #35	MGAT2 (ENSSVLG00005008964)
Hystricomorpha	ANCESTRAL SPECIES	15	ENSGT01020000230346.A	ENSGT00390000007753.b	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a	ENSGT01050000244902.b.c.b	ENSGT00940000157901 #13	ENSGT00390000005163 #14	ENSGT01100000263497.C #15	ENSGT00940000155517 #16	ENSGT00940000155959 #17	ENSGT00940000154071.A #18	ENSGT00950000183148.a #19	ENSGT00940000161597 #20	ENSGT00660000095541.a.b #21	ENSGT00940000156106 #22	ENSGT00940000158704 #23	ENSGT00940000158072 #24	ENSGT00940000159132.a #25	ENSGT00940000156502 #26	ENSGT00490000043421 #27	ENSGT00940000158324 #28	ENSGT00940000157135 #29	ENSGT00940000156593 #30	ENSGT00390000018516 #31	ENSGT00940000157150 #32	ENSGT00940000157509 #33	ENSGT00390000012435 #34	ENSGT00510000048466 #35	ENSGT00390000007341.a	ENSGT00390000018085.a.a.a.b.b.b ##37
Hystricomorpha_a	ANCESTRAL SPECIES	18	ENSGT01020000230346.A	ENSGT00390000007753.b	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a	ENSGT01050000244902.b.c.b	ENSGT00940000157901 #13	ENSGT00390000005163 #14	ENSGT01100000263497.C #15	ENSGT00940000155517 #16	ENSGT00940000155959 #17	ENSGT00940000154071.A #18	ENSGT00950000183148.a #19	ENSGT00940000161597 #20	ENSGT00660000095541.a.b #21	ENSGT00940000156106 #22	ENSGT00940000158704 #23	ENSGT00940000158072 #24	ENSGT00940000159132.a #25	ENSGT00940000156502 #26	ENSGT00490000043421 #27	ENSGT00940000158324 #28	ENSGT00940000157135 #29	ENSGT00940000156593 #30	ENSGT00390000018516 #31	ENSGT00940000157150 #32	ENSGT00940000157509 #33	ENSGT00390000012435 #34	ENSGT00510000048466 #35	ENSGT00390000007341.a	ENSGT00390000018085.a.a.a.b.b.b ##37
Hystricomorpha_b	ANCESTRAL SPECIES	18	ENSGT01020000230346.A	ENSGT00390000007753.b	ENSGT00940000153986.a	ENSGT00390000006080	ENSGT01050000244902.b.c.a	ENSGT01050000244902.b.c.b	ENSGT00940000157901 #13	ENSGT00390000005163 #14	ENSGT01100000263497.C #15	ENSGT00940000155517 #16	ENSGT00940000155959 #17	ENSGT00940000154071.A #18	ENSGT00950000183148.a #19	ENSGT00940000161597 #20	ENSGT00660000095541.a.b #21	ENSGT00940000156106 #22	ENSGT00940000158704 #23	ENSGT00940000158072 #24	ENSGT00940000159132.a #25	ENSGT00940000156502 #26	ENSGT00490000043421 #27	ENSGT00940000158324 #28	ENSGT00940000157135 #29	ENSGT00940000156593 #30	ENSGT00390000018516 #31	ENSGT00940000157150 #32	ENSGT00940000157509 #33	ENSGT00390000012435 #34	ENSGT00510000048466 #35	ENSGT00390000007341.a	ENSGT00390000018085.a.a.a.b.b.b ##37
Long-tailed chinchilla	MODERN SPECIES	116	ENSCLAG00000013485	ERO1A (ENSCLAG00000007882)	GPR137C (ENSCLAG00000008672)	TXNDC16 (ENSCLAG00000011425)	PTGER2 (ENSCLAG00000011936)	PTGDR (ENSCLAG00000013111)	NID2 (ENSCLAG00000010006) #13	RTRAF (ENSCLAG00000010765) #14	GNG2 (ENSCLAG00000008554) #15	FRMD6 (ENSCLAG00000009659) #16	TMX1 (ENSCLAG00000012466) #17	TRIM9 (ENSCLAG00000016405) #18	PYGL (ENSCLAG00000010968) #19	ABHD12B (ENSCLAG00000009260) #20	NIN (ENSCLAG00000009323) #21	SAV1 (ENSCLAG00000009132) #22	ATL1 (ENSCLAG00000014538) #23	MAP4K5 (ENSCLAG00000012379) #24	CDKL1 (ENSCLAG00000009074) #25	DMAC2L (ENSCLAG00000011112) #26	L2HGDH (ENSCLAG00000007771) #27	SOS2 (ENSCLAG00000010549) #28	VCPKMT (ENSCLAG00000009925) #29	ARF6 (ENSCLAG00000018079) #30	NEMF (ENSCLAG00000012469) #31	KLHDC2 (ENSCLAG00000016294) #32	KLHDC1 (ENSCLAG00000011115) #33	POLE2 (ENSCLAG00000013349) #34	DNAAF2 (ENSCLAG00000013335) #35	MGAT2 (ENSCLAG00000017895)	ENSCLAG00000013834 ##37
Degu	MODERN SPECIES	143	PTGDR (ENSODEG00000012057)	ENSODEG00000013970	ENSODEG00000011443	ENSODEG00000011601	NID2 (ENSODEG00000012414) #13	ENSODEG00000010999 #14	ENSODEG00000011408	GNG2 (ENSODEG00000011344) #15	ENSODEG00000019879	FRMD6 (ENSODEG00000011173) #16	ENSODEG00000011543 #17	TRIM9 (ENSODEG00000011533) #18	PYGL (ENSODEG00000011563) #19	ABHD12B (ENSODEG00000011544) #20	NIN (ENSODEG00000010876) #21	SAV1 (ENSODEG00000012011) #22	ATL1 (ENSODEG00000011772) #23	ENSODEG00000011847 #24	ENSODEG00000011537	CDKL1 (ENSODEG00000011708) #25	DMAC2L (ENSODEG00000011553) #26	L2HGDH (ENSODEG00000012605) #27	ENSODEG00000011751	ENSODEG00000012187	ENSODEG00000012746	ENSODEG00000013334 #28	VCPKMT (ENSODEG00000011299) #29	ARF6 (ENSODEG00000020106) #30	NEMF (ENSODEG00000013310) #31	KLHDC2 (ENSODEG00000013007) #32	KLHDC1 (ENSODEG00000013185) #33
Guinea pig	MODERN SPECIES	23	ERO1A (ENSCPOG00000007439)	GPR137C (ENSCPOG00000007435)	TXNDC16 (ENSCPOG00000012597)	PTGER2 (ENSCPOG00000031528)	PTGDR (ENSCPOG00000006861)	NID2 (ENSCPOG00000001320) #13	RTRAF (ENSCPOG00000040014) #14	GNG2 (ENSCPOG00000039841) #15	FRMD6 (ENSCPOG00000003119) #16	TMX1 (ENSCPOG00000031959) #17	TRIM9 (ENSCPOG00000010456) #18	PYGL (ENSCPOG00000006129) #19	ABHD12B (ENSCPOG00000014872) #20	ENSCPOG00000008548	NIN (ENSCPOG00000006119) #21	SAV1 (ENSCPOG00000031808) #22	ATL1 (ENSCPOG00000040134) #23	MAP4K5 (ENSCPOG00000014479) #24	CDKL1 (ENSCPOG00000034915) #25	DMAC2L (ENSCPOG00000014471) #26	L2HGDH (ENSCPOG00000010700) #27	SOS2 (ENSCPOG00000010690) #28	VCPKMT (ENSCPOG00000011127) #29	ARF6 (ENSCPOG00000008137) #30	NEMF (ENSCPOG00000011839) #31	KLHDC2 (ENSCPOG00000011835) #32	KLHDC1 (ENSCPOG00000038390) #33	POLE2 (ENSCPOG00000004304) #34	DNAAF2 (ENSCPOG00000009147) #35	MGAT2 (ENSCPOG00000009139)	ENSCPOG00000037100 ##37
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	11	ENSHGLG00000050455	TXNDC16 (ENSHGLG00000010925)	PTGER2 (ENSHGLG00000040443)	PTGDR (ENSHGLG00000011361)	NID2 (ENSHGLG00000012453) #13	ENSHGLG00000011931 #14	GNG2 (ENSHGLG00000037657) #15	FRMD6 (ENSHGLG00000013454) #16	ENSHGLG00000046758	TMX1 (ENSHGLG00000012700) #17	TRIM9 (ENSHGLG00000011753) #18	PYGL (ENSHGLG00000011923) #19	ABHD12B (ENSHGLG00000017092) #20	NIN (ENSHGLG00000010798) #21	ENSHGLG00000039372	ENSHGLG00000014486 #22	ATL1 (ENSHGLG00000017094) #23	MAP4K5 (ENSHGLG00000011509) #24	ENSHGLG00000007162	CDKL1 (ENSHGLG00000042701) #25	DMAC2L (ENSHGLG00000042464) #26	L2HGDH (ENSHGLG00000010171) #27	SOS2 (ENSHGLG00000011807) #28	ENSHGLG00000044017	METTL21D (ENSHGLG00000011833) #29	ENSHGLG00000012671	ARF6 (ENSHGLG00000040454) #30	NEMF (ENSHGLG00000014110) #31	KLHDC2 (ENSHGLG00000014323) #32	KLHDC1 (ENSHGLG00000014487) #33	POLE2 (ENSHGLG00000015308) #34
Naked mole-rat female	MODERN SPECIES	31	ENSHGLG00000041497	ENSHGLG00000010972	ENSHGLG00000046515	ENSHGLG00000040882	ENSHGLG00000007629	ENSHGLG00000033865	ENSHGLG00000034873	ENSHGLG00000034867	F9 (ENSHGLG00000050058)	MCF2 (ENSHGLG00000013161)	ENSHGLG00000009095	ATP11C (ENSHGLG00000007759)	ENSHGLG00000047068	SOX3 (ENSHGLG00000039208)	ENSHGLG00000039059	ENSHGLG00000004407 #22	ENSHGLG00000037583	ENSHGLG00000036529	ENSHGLG00000049672	ENSHGLG00000038876	ENSHGLG00000032750	ENSHGLG00000035566	SLITRK2 (ENSHGLG00000007935)	ENSHGLG00000045634	ENSHGLG00000040472	FMR1 (ENSHGLG00000000576)	ENSHGLG00000019716	ENSHGLG00000028863	AFF2 (ENSHGLG00000000634)	IDS (ENSHGLG00000049970)	ENSHGLG00000043323
Naked mole-rat female	MODERN SPECIES	15	USP7 (ENSHGLG00000018774)	ENSHGLG00000036166	PMM2 (ENSHGLG00000042320)	TMEM186 (ENSHGLG00000006781)	ABAT (ENSHGLG00000006051)	ENSHGLG00000017658	ENSHGLG00000032356	ENSHGLG00000020155	ENSHGLG00000042436	ENSHGLG00000037965	ENSHGLG00000013307	ENSHGLG00000016944	ENSHGLG00000015461	ENSHGLG00000041009	ENSHGLG00000044681	ENSHGLG00000020958 #22	ENSHGLG00000014051	ENSHGLG00000016910	C16orf89 (ENSHGLG00000010662)	NAGPA (ENSHGLG00000009058)	SEC14L5 (ENSHGLG00000007409)	PPL (ENSHGLG00000017647)	ENSHGLG00000048344	UBN1 (ENSHGLG00000013188)	GLYR1 (ENSHGLG00000019553)	ROGDI (ENSHGLG00000018315)	ENSHGLG00000019056	ENSHGLG00000014562	ENSHGLG00000010731	ENSHGLG00000047297	MGRN1 (ENSHGLG00000010412)