Bovidae	ANCESTRAL SPECIES	9	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a #8	ENSGT00510000047568 #9	ENSGT00950000182903.a.a #10	ENSGT00940000159223 #11	ENSGT00940000155604 #12	ENSGT00940000157096 #13	ENSGT00390000013904 #14	ENSGT00940000164140 #15	ENSGT00390000004940.a.a #16	ENSGT00940000156921 #17	ENSGT00940000153386.B #18	ENSGT00940000154648.a.a #19	ENSGT00950000183106.a.a.b #20	ENSGT00940000155439 #21	ENSGT00390000018195 #22	ENSGT00390000006294 #23	ENSGT00940000161767 #24	ENSGT00940000164132 #25	ENSGT00940000158024.C #27	ENSGT00940000163736 #28	ENSGT00390000010672 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #32	ENSGT00940000158216 #33	ENSGT00940000163412	ENSGT00940000156285 #35	ENSGT00940000154951 #36	ENSGT00940000154913 #37	ENSGT00950000183009.z	ENSGT00940000163340
Caprinae	ANCESTRAL SPECIES	8	ENSGT00940000156739.b.b.b ##7	ENSGT00940000156739.a #7	ENSGT00510000047568 #9	ENSGT00950000182903.a.a #10	ENSGT00940000159223 #11	ENSGT00940000155604 #12	ENSGT00940000157096 #13	ENSGT00390000013904 #14	ENSGT00940000164140 #15	ENSGT00390000004940.a.a #16	ENSGT00940000156921 #17	ENSGT00940000153386.B #18	ENSGT00940000154648.a.a #19	ENSGT00950000183106.a.a.b #20	ENSGT00940000155439 #21	ENSGT00390000018195 #22	ENSGT00390000006294 #23	ENSGT00940000161767 #24	ENSGT00940000164132 #25	ENSGT00940000158024.C #27	ENSGT00940000163736 #28	ENSGT00390000010672 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #32	ENSGT00940000158216 #33	ENSGT00940000162528 #34	ENSGT00940000156285 #35	ENSGT00940000154951 #36	ENSGT00940000154913 #37	ENSGT00950000183009.z	ENSGT00940000163340
Rambouillet Sheep	MODERN SPECIES		ENSOARG00020004585 #7	ENSOARG00020004391 #8	EIF2B5 (ENSOARG00020004361) #9	DVL3 (ENSOARG00020004223) #10	AP2M1 (ENSOARG00020004092) #11	ABCF3 (ENSOARG00020004044) #12	VWA5B2 (ENSOARG00020003898) #13	ALG3 (ENSOARG00020003862) #14	EEF1AKMT4 (ENSOARG00020003838) #15	CAMK2N2 (ENSOARG00020003814) #16	ECE2 (ENSOARG00020003310) #17	PSMD2 (ENSOARG00020003166) #18	EIF4G1 (ENSOARG00020003022) #19	FAM131A (ENSOARG00020002962) #20	CLCN2 (ENSOARG00020002595) #21	POLR2H (ENSOARG00020002486) #22	THPO (ENSOARG00020002426) #23	CHRD (ENSOARG00020002248) #24	ENSOARG00020002214 #25	ENSOARG00020002200 #26	EPHB3 (ENSOARG00020002164) #27	MAGEF1 (ENSOARG00020002151) #28	VPS8 (ENSOARG00020001695) #29	C3orf70 (ENSOARG00020001606) #30	ENSOARG00020001600 #31	EHHADH (ENSOARG00020001586) #32	MAP3K13 (ENSOARG00020001542) #33	TMEM41A (ENSOARG00020001523) #34	LIPH (ENSOARG00020001487) #35	SENP2 (ENSOARG00020001455) #36	IGF2BP2 (ENSOARG00020001135) #37
Goat	MODERN SPECIES		ENSCHIG00000019914 ##7	ENSCHIG00000015435 #7	ENSCHIG00000017073 #8	EIF2B5 (ENSCHIG00000026144) #9	DVL3 (ENSCHIG00000013014) #10	AP2M1 (ENSCHIG00000018814) #11	ABCF3 (ENSCHIG00000018349) #12	VWA5B2 (ENSCHIG00000007439) #13	ALG3 (ENSCHIG00000015770) #14	CAMK2N2 (ENSCHIG00000018201) #16	ECE2 (ENSCHIG00000012826) #17	PSMD2 (ENSCHIG00000016997) #18	EIF4G1 (ENSCHIG00000009775) #19	FAM131A (ENSCHIG00000015881) #20	CLCN2 (ENSCHIG00000012282) #21	POLR2H (ENSCHIG00000006695) #22	THPO (ENSCHIG00000017758) #23	CHRD (ENSCHIG00000011375) #24	ENSCHIG00000020124	ENSCHIG00000009628 #25	EPHB3 (ENSCHIG00000005276) #27	MAGEF1 (ENSCHIG00000018285) #28	ENSCHIG00000010591	VPS8 (ENSCHIG00000011920) #29	C3orf70 (ENSCHIG00000017215) #30	ENSCHIG00000006056 ##31	EHHADH (ENSCHIG00000010352) #32	MAP3K13 (ENSCHIG00000015662) #33	ENSCHIG00000003347	LIPH (ENSCHIG00000014282) #35	ENSCHIG00000018521 #36
Bovinae	ANCESTRAL SPECIES	6	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a #8	ENSGT00510000047568 #9	ENSGT00950000182903.a.a #10	ENSGT00940000159223.n #11	ENSGT00940000155604 #12	ENSGT00940000157096 #13	ENSGT00390000013904 #14	ENSGT00940000164140 #15	ENSGT00390000004940.a.a #16	ENSGT00940000156921 #17	ENSGT00940000153386.B #18	ENSGT00940000154648.a.a #19	ENSGT00950000183106.a.a.b #20	ENSGT00940000155439 #21	ENSGT00390000018195 #22	ENSGT00390000006294 #23	ENSGT00940000161767 #24	ENSGT00940000164132 #25	ENSGT00940000158024.C #27	ENSGT00940000163736 #28	ENSGT00390000010672 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #32	ENSGT00940000158216 #33	ENSGT00940000163412	ENSGT00940000156285 #35	ENSGT00940000154951 #36	ENSGT00940000154913 #37	ENSGT00950000183009.z	ENSGT00940000163340
Bos	ANCESTRAL SPECIES	7	ENSGT00940000155470.b	ENSGT00940000156739.b.b.a #8	ENSGT00510000047568 #9	ENSGT00950000182903.a.a #10	ENSGT00940000159223.n #11	ENSGT00940000155604 #12	ENSGT00940000157096 #13	ENSGT00390000013904 #14	ENSGT00940000164140 #15	ENSGT00390000004940.a.a #16	ENSGT00940000156921 #17	ENSGT00940000153386.B #18	ENSGT00940000154648.a.a #19	ENSGT00950000183106.a.a.b #20	ENSGT00940000155439 #21	ENSGT00390000018195 #22	ENSGT00390000006294 #23	ENSGT00940000161767 #24	ENSGT00940000164132 #25	ENSGT00940000158024.C #27	ENSGT00940000163736 #28	ENSGT00390000010672 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #32	ENSGT00940000158216 #33	ENSGT00940000163412	ENSGT00940000156285 #35	ENSGT00940000154951 #36	ENSGT00940000154913 #37	ENSGT00950000183009.z	ENSGT00940000163340
Bos_a	ANCESTRAL SPECIES	5	ENSGT00940000156739.b.b.a #8	ENSGT00510000047568 #9	ENSGT00950000182903.a.a #10	ENSGT00940000159223.n #11	ENSGT00940000155604 #12	ENSGT00940000157096 #13	ENSGT00390000013904 #14	ENSGT00960000190787	ENSGT00940000164140 #15	ENSGT00390000004940.a.a #16	ENSGT00940000156921 #17	ENSGT00940000153386.B #18	ENSGT00940000154648.a.a #19	ENSGT00950000183106.a.a.b #20	ENSGT00940000155439 #21	ENSGT00390000018195 #22	ENSGT00390000006294 #23	ENSGT00940000161767 #24	ENSGT00940000164132 #25	ENSGT00940000158024.C #27	ENSGT00940000163736 #28	ENSGT00390000010672 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #32	ENSGT00940000158216 #33	ENSGT00940000163412	ENSGT00940000156285 #35	ENSGT00940000154951 #36	ENSGT00940000154913 #37	ENSGT00950000183009.z	ENSGT00940000163340
Wild yak	MODERN SPECIES	2438	ENSBMUG00000020525 #7	ENSBMUG00000020501 #8	EIF2B5 (ENSBMUG00000020467) #9	DVL3 (ENSBMUG00000020415) #10	AP2M1 (ENSBMUG00000020318) #11	ABCF3 (ENSBMUG00000020236) #12	VWA5B2 (ENSBMUG00000020086) #13	ENSBMUG00000019893	EEF1AKMT4 (ENSBMUG00000019885) #15	CAMK2N2 (ENSBMUG00000019881) #16	ECE2 (ENSBMUG00000019815) #17	PSMD2 (ENSBMUG00000019690) #18	EIF4G1 (ENSBMUG00000019290) #19	FAM131A (ENSBMUG00000018906) #20	CLCN2 (ENSBMUG00000018855) #21	POLR2H (ENSBMUG00000018678) #22	THPO (ENSBMUG00000018627) #23	CHRD (ENSBMUG00000018485) #24	ENSBMUG00000018369 #25	ENSBMUG00000018360 #25
Domestic yak	MODERN SPECIES		ENSBGRG00000000975 #8	EIF2B5 (ENSBGRG00000000921) #9	DVL3 (ENSBGRG00000000862) #10	AP2M1 (ENSBGRG00000000714) #11	ABCF3 (ENSBGRG00000000581) #12	VWA5B2 (ENSBGRG00000000310) #13	ALG3 (ENSBGRG00000000258) #14	EEF1AKMT4 (ENSBGRG00000000248) #15	CAMK2N2 (ENSBGRG00000000240) #16	ECE2 (ENSBGRG00000000211) #17	PSMD2 (ENSBGRG00000000173) #18	ENSBGRG00000000165	EIF4G1 (ENSBGRG00000003743) #19	FAM131A (ENSBGRG00000003599) #20	CLCN2 (ENSBGRG00000003313) #21	POLR2H (ENSBGRG00000003267) #22	THPO (ENSBGRG00000003222) #23	CHRD (ENSBGRG00000003140) #24	ENSBGRG00000003108 #25	EPHB3 (ENSBGRG00000003058) #27	VPS8 (ENSBGRG00000002973) #29	C3orf70 (ENSBGRG00000002933) #30	EHHADH (ENSBGRG00000002913) #32	MAP3K13 (ENSBGRG00000002802) #33	ENSBGRG00000002766	LIPH (ENSBGRG00000002721) #35	SENP2 (ENSBGRG00000002680) #36	ENSBGRG00000002670	IGF2BP2 (ENSBGRG00000002494) #37	TRA2B (ENSBGRG00000002443)	ENSBGRG00000002436
Bos_b	ANCESTRAL SPECIES	5	ENSGT00940000156739.b.b.a #8	ENSGT00940000156739.a #7	ENSGT00510000047568 #9	ENSGT00950000182903.a.a #10	ENSGT00940000159223.n #11	ENSGT00940000155604 #12	ENSGT00940000157096 #13	ENSGT00390000013904 #14	ENSGT00940000164140 #15	ENSGT00390000004940.a.a #16	ENSGT00940000156921 #17	ENSGT00940000153386.B #18	ENSGT00940000154648.a.a #19	ENSGT00950000183106.a.a.b #20	ENSGT00940000155439 #21	ENSGT00390000018195 #22	ENSGT00390000006294 #23	ENSGT00940000161767 #24	ENSGT00940000164132 #25	ENSGT00940000158024.C #27	ENSGT00940000163736 #28	ENSGT00390000010672 #29	ENSGT00390000006618 #30	ENSGT00940000157516 #32	ENSGT00940000158216 #33	ENSGT00940000163412	ENSGT00940000156285 #35	ENSGT00940000154951 #36	ENSGT00940000154913 #37	ENSGT00950000183009.z	ENSGT00940000163340
Cow	MODERN SPECIES		HTR3C (ENSBTAG00000016624) #7	ENSBTAG00000040304 #8	EIF2B5 (ENSBTAG00000011414) #9	DVL3 (ENSBTAG00000019336) #10	AP2M1 (ENSBTAG00000020106) #11	ABCF3 (ENSBTAG00000006920) #12	VWA5B2 (ENSBTAG00000040399) #13	ALG3 (ENSBTAG00000005652) #14	ECE2 (ENSBTAG00000051586) #15	CAMK2N2 (ENSBTAG00000005657) #16	ECE2 (ENSBTAG00000005658) #17	PSMD2 (ENSBTAG00000005660) #18	EIF4G1 (ENSBTAG00000012881) #19	FAM131A (ENSBTAG00000012273) #20	CLCN2 (ENSBTAG00000012284) #21	POLR2H (ENSBTAG00000040199) #22	THPO (ENSBTAG00000000476) #23	CHRD (ENSBTAG00000002878) #24	ENSBTAG00000050376 #25	ENSBTAG00000008343 #25	EPHB3 (ENSBTAG00000005313) #27	MAGEF1 (ENSBTAG00000019014) #28	ENSBTAG00000050932 #29	VPS8 (ENSBTAG00000005209) #29	C1H3orf70 (ENSBTAG00000005212) #30	ENSBTAG00000007296	EHHADH (ENSBTAG00000019625) #32	MAP3K13 (ENSBTAG00000017103) #33	TMEM41A (ENSBTAG00000017115)	LIPH (ENSBTAG00000001535) #35	SENP2 (ENSBTAG00000001749) #36
Hybrid Bos Indicus	MODERN SPECIES		ABCC5 (ENSBIXG00005003430)	ENSBIXG00005005742 #8	ENSBIXG00005020515 #7	ENSBIXG00005007343 #8	EIF2B5 (ENSBIXG00005003518) #9	DVL3 (ENSBIXG00005006824) #10	ENSBIXG00005006041 #11	ABCF3 (ENSBIXG00005021033) #12	VWA5B2 (ENSBIXG00005021081) #13	ALG3 (ENSBIXG00005021154) #14	CAMK2N2 (ENSBIXG00005021179) #16	PSMD2 (ENSBIXG00005021531) #18	EIF4G1 (ENSBIXG00005021923) #19	FAM131A (ENSBIXG00005021986) #20	CLCN2 (ENSBIXG00005022492) #21	POLR2H (ENSBIXG00005022599) #22	THPO (ENSBIXG00005022636) #23	CHRD (ENSBIXG00005003880) #24	ENSBIXG00005022688 #25	ENSBIXG00005022691 #25	EPHB3 (ENSBIXG00005022730) #27	MAGEF1 (ENSBIXG00005022770) #28	VPS8 (ENSBIXG00005007072) #29	C3orf70 (ENSBIXG00005022887) #30	EHHADH (ENSBIXG00005022928) #32	MAP3K13 (ENSBIXG00005005757) #33	ENSBIXG00005023159	LIPH (ENSBIXG00005023240) #35	SENP2 (ENSBIXG00005003979) #36	IGF2BP2 (ENSBIXG00005023418) #37	TRA2B (ENSBIXG00005023496)
American bison	MODERN SPECIES	3281	ENSBBBG00000001253 #8	EIF2B5 (ENSBBBG00000001309) #9	ENSBBBG00000001371	DVL3 (ENSBBBG00000001379) #10	AP2M1 (ENSBBBG00000015302) #11	ABCF3 (ENSBBBG00000015199) #12	VWA5B2 (ENSBBBG00000015159) #13	ALG3 (ENSBBBG00000015154) #14	EEF1AKMT4 (ENSBBBG00000015133) #15	CAMK2N2 (ENSBBBG00000015130) #16	ECE2 (ENSBBBG00000015118) #17	PSMD2 (ENSBBBG00000015048) #18	EIF4G1 (ENSBBBG00000003700) #19	FAM131A (ENSBBBG00000003585) #20	CLCN2 (ENSBBBG00000014739) #21	POLR2H (ENSBBBG00000014568) #22	THPO (ENSBBBG00000009127) #23	CHRD (ENSBBBG00000003393) #24	ENSBBBG00000003343 #25	ENSBBBG00000014448 #25