Hystricomorpha	ANCESTRAL SPECIES	41	ENSGT00940000160119	ENSGT00940000155462	ENSGT00940000161944	ENSGT00940000156226	ENSGT00530000063320.B.u #7	ENSGT00940000163501	ENSGT00530000063320.B.v #9	ENSGT00940000157966 #11	ENSGT00390000007279.g.b #13	ENSGT00390000000510 #14	ENSGT00390000011776	ENSGT00940000158213 #16	ENSGT00390000018635.c	ENSGT00390000002881 #20	ENSGT00530000063583.b #21	ENSGT00950000182962.b.b.b #22	ENSGT01060000248564.b.a.a.b #23	ENSGT00940000159373 #25	ENSGT00940000159117 #26	ENSGT00390000009166	ENSGT00940000159634	ENSGT00530000063929.a.a	ENSGT00940000163170	ENSGT00530000063695.b #27	ENSGT00950000183168.B.b #28	ENSGT00390000000663	ENSGT00940000159826 #29	ENSGT00390000013227.a.a #30	ENSGT00940000153609.b #31	ENSGT00940000156693 #32	ENSGT00390000012341 #34
Hystricomorpha_a	ANCESTRAL SPECIES	46	ENSGT00940000155462	ENSGT00940000161944	ENSGT00940000156226	ENSGT00530000063320.B.u.c #7	ENSGT00940000163501	ENSGT00530000063320.B.u.d #8	ENSGT00530000063320.B.v #9	ENSGT00940000157966 #11	ENSGT00390000007279.g.b #13	ENSGT00390000000510 #14	ENSGT00390000011776	ENSGT00940000158213 #16	ENSGT00390000018635.c	ENSGT00390000002881 #20	ENSGT00530000063583.b #21	ENSGT00950000182962.b.b.b #22	ENSGT01060000248564.b.a.a.b #23	ENSGT00940000159373 #25	ENSGT00940000159117 #26	ENSGT00390000009166	ENSGT00940000159634	ENSGT00530000063929.a.a	ENSGT00940000163170	ENSGT00530000063695.b #27	ENSGT00950000183168.B.b #28	ENSGT00390000000663	ENSGT00940000159826 #29	ENSGT00390000013227.a.a #30	ENSGT00940000153609.b #31	ENSGT00940000156693 #32	ENSGT00390000012341 #34
Hystricomorpha_b	ANCESTRAL SPECIES	41		ENSGT00940000155462	ENSGT00940000164609	ENSGT00940000156226	ENSGT00530000063320.B.u.c.b ##7	ENSGT00530000063320.B.u.d #8	ENSGT00530000063320.B.v #9	ENSGT00940000157966 #11	ENSGT00390000007279.g.b #13	ENSGT00390000000510 #14	ENSGT00390000011776	ENSGT00940000158213 #16	ENSGT00390000018635.c	ENSGT00390000002881 #20	ENSGT00530000063583.b #21	ENSGT00950000182962.b.b.b #22	ENSGT01060000248564.b.a.a.b #23	ENSGT00940000159373 #25	ENSGT00940000159117 #26	ENSGT00390000009166	ENSGT00940000159634	ENSGT00530000063929.a.a	ENSGT00940000163170	ENSGT00530000063695.b #27	ENSGT00950000183168.B.b #28	ENSGT00390000000663	ENSGT00940000159826 #29	ENSGT00390000013227.a.a #30	ENSGT00940000153609.b #31	ENSGT00940000156693 #32	ENSGT00390000012341 #34
Degu	MODERN SPECIES	131	ENSODEG00000013600 #7	ENSODEG00000013062 #8	ENSODEG00000013254 #9	ENSODEG00000015389 #10	SLC16A10 (ENSODEG00000013681) #11	ENSODEG00000012904 #12	ENSODEG00000013529 #13	GTF3C6 (ENSODEG00000013017) #14	ENSODEG00000012898 #15	CDK19 (ENSODEG00000012764) #16	ENSODEG00000014327 #17	ENSODEG00000012677 #18	ENSODEG00000012903 #19	METTL24 (ENSODEG00000013180) #20	CDC40 (ENSODEG00000012990) #21	WASF1 (ENSODEG00000012933) #22	GPR6 (ENSODEG00000020143) #23	ENSODEG00000020129 #24	ZBTB24 (ENSODEG00000014058) #25	MICAL1 (ENSODEG00000013443) #26	ENSODEG00000013880 #27	SESN1 (ENSODEG00000013348) #28	ENSODEG00000014459 #29	AFG1L (ENSODEG00000014385) #30	ENSODEG00000013844 #31	NR2E1 (ENSODEG00000014374) #32	ENSODEG00000013551 #33	ENSODEG00000014366 #34	ENSODEG00000014125 #35	SEC63 (ENSODEG00000012763) #36	SOBP (ENSODEG00000014370) #37
Long-tailed chinchilla	MODERN SPECIES	118	ENSCLAG00000010384	REV3L (ENSCLAG00000012117)	ENSCLAG00000009808 ##7	ENSCLAG00000011925 #7	ENSCLAG00000012652	ENSCLAG00000010371 #8	ENSCLAG00000009708 #9	SLC16A10 (ENSCLAG00000012250) #11	ENSCLAG00000010393 #13	GTF3C6 (ENSCLAG00000009425) #14	AMD1 (ENSCLAG00000009847)	CDK19 (ENSCLAG00000010777) #16	DDO (ENSCLAG00000009502)	METTL24 (ENSCLAG00000012913) #20	CDC40 (ENSCLAG00000009515) #21	WASF1 (ENSCLAG00000009978) #22	GPR6 (ENSCLAG00000009486) #23	ZBTB24 (ENSCLAG00000011189) #25	MICAL1 (ENSCLAG00000012170) #26	SMPD2 (ENSCLAG00000009948)	PPIL6 (ENSCLAG00000009714)	CD164 (ENSCLAG00000009279)	ENSCLAG00000009929	CEP57L1 (ENSCLAG00000010353) #27	SESN1 (ENSCLAG00000012296) #28	ENSCLAG00000009751	ENSCLAG00000009801	ENSCLAG00000010630 #29	AFG1L (ENSCLAG00000012599) #30	SNX3 (ENSCLAG00000011964) #31	NR2E1 (ENSCLAG00000017092) #32
Guinea pig	MODERN SPECIES	63													DDO (ENSCPOG00000031744)	METTL24 (ENSCPOG00000010973) #20	ENSCPOG00000010967 #21	WASF1 (ENSCPOG00000004089) #22	ZBTB24 (ENSCPOG00000003110) #25	MICAL1 (ENSCPOG00000003105) #26	SMPD2 (ENSCPOG00000003102)	PPIL6 (ENSCPOG00000003098)	CD164 (ENSCPOG00000034850)	ENSCPOG00000012574	CEP57L1 (ENSCPOG00000035572) #27	SESN1 (ENSCPOG00000013793) #28	ARMC2 (ENSCPOG00000006505)	ENSCPOG00000021906 #29	AFG1L (ENSCPOG00000011326) #30	SNX3 (ENSCPOG00000032088) #31	NR2E1 (ENSCPOG00000000097) #32	OSTM1 (ENSCPOG00000010183) #34	SEC63 (ENSCPOG00000002486) #36
Naked mole-rat female	MODERN SPECIES		ENSHGLG00000038399	ENSHGLG00000002556 #9	ENSHGLG00000002017	ENSHGLG00000034717	ENSHGLG00000000862 #11	ENSHGLG00000032154	ENSHGLG00000033830	ENSHGLG00000001322 ##13	GTF3C6 (ENSHGLG00000039720) #14	ENSHGLG00000000838	CDK19 (ENSHGLG00000000716) #16	ENSHGLG00000019759	DDO (ENSHGLG00000002308)	METTL24 (ENSHGLG00000001685) #20	ENSHGLG00000001618 #21	WASF1 (ENSHGLG00000001120) #22	ENSHGLG00000050307	ENSHGLG00000049653	ENSHGLG00000000618 #23	ENSHGLG00000032215	ZBTB24 (ENSHGLG00000019919) #25	ENSHGLG00000000497	MICAL1 (ENSHGLG00000000326) #26	SMPD2 (ENSHGLG00000000226)	PPIL6 (ENSHGLG00000043482)	CD164 (ENSHGLG00000037227)	ENSHGLG00000042886	CEP57L1 (ENSHGLG00000002787) #27	SESN1 (ENSHGLG00000000578) #28	ENSHGLG00000013638	ENSHGLG00000002635