Euarchontoglires_A	ANCESTRAL SPECIES	5	ENSGT00940000161665	ENSGT00940000156707 #8	ENSGT00950000183019.f.b.a #9	ENSGT00390000016495 #10	ENSGT00940000160329 #11	ENSGT00940000160653 #12	ENSGT00950000183080.a.a #13	ENSGT00940000159521 #14	ENSGT00940000153804.B #15	ENSGT00940000158666 #16	ENSGT00940000155606.b #17	ENSGT00950000182837.b.a #18	ENSGT00940000155687 #19	ENSGT00390000010327 #20	ENSGT00940000159544 #21	ENSGT00940000155808 #22	ENSGT00940000165147	ENSGT00940000161726 #24	ENSGT00940000163803	ENSGT00940000162388.B	ENSGT00940000162388.A	ENSGT00390000014843	ENSGT00940000162202.A ##26	ENSGT00940000162202.B ##26	ENSGT00940000162121 #27	ENSGT00730000111596	ENSGT01100000263574.a	ENSGT00390000002978 #30	ENSGT00940000159366 #31	ENSGT00940000155440.d #32	ENSGT00940000155489.b.f #33
Glires	ANCESTRAL SPECIES	4	ENSGT00940000161665	ENSGT00940000156707 #8	ENSGT00950000183019.f.b.a #9	ENSGT00390000016495 #10	ENSGT00940000160329 #11	ENSGT00940000160653 #12	ENSGT00950000183080.a.a #13	ENSGT00940000159521 #14	ENSGT00940000153804.B #15	ENSGT00940000158666 #16	ENSGT00940000155606.b #17	ENSGT00950000182837.b.a #18	ENSGT00940000155687 #19	ENSGT00390000010327 #20	ENSGT00940000159544 #21	ENSGT00940000155808 #22	ENSGT00940000165147	ENSGT00940000161726 #24	ENSGT00940000163803	ENSGT00940000162388.B	ENSGT00940000162388.A	ENSGT00390000014843	ENSGT00940000162202.A ##26	ENSGT00940000162202.B ##26	ENSGT00940000162121 #27	ENSGT00730000111596	ENSGT01100000263574.a	ENSGT00390000002978 #30	ENSGT00940000159366 #31	ENSGT00940000155440.d #32	ENSGT00940000155489.b.f #33
Rodentia	ANCESTRAL SPECIES	5	ENSGT00940000161665	ENSGT00940000156707 #8	ENSGT00950000183019.f.b.a #9	ENSGT00390000016495 #10	ENSGT00940000160329 #11	ENSGT00940000160653 #12	ENSGT00950000183080.a.a #13	ENSGT00940000159521 #14	ENSGT00940000153804.B #15	ENSGT00940000158666 #16	ENSGT00940000155606.b #17	ENSGT00950000182837.b.a #18	ENSGT00940000155687 #19	ENSGT00390000010327 #20	ENSGT00940000159544 #21	ENSGT00940000155808 #22	ENSGT00940000165147	ENSGT00940000161726 #24	ENSGT00940000163803	ENSGT00940000162388.B	ENSGT00940000162388.A	ENSGT00390000014843	ENSGT00940000162202.A ##26	ENSGT00940000162202.B ##26	ENSGT00940000162202.C #26	ENSGT00940000162121 #27	ENSGT00730000111596	ENSGT01100000263574.a	ENSGT00390000002978 #30	ENSGT00940000159366 #31	ENSGT00940000155440.d #32
Rodentia_B	ANCESTRAL SPECIES	3	ENSGT00940000161665	ENSGT00940000156707 #8	ENSGT00950000183019.f.b.a #9	ENSGT00390000016495 #10	ENSGT00940000160329 #11	ENSGT00940000160653 #12	ENSGT00950000183080.a.a #13	ENSGT00940000159521 #14	ENSGT00940000153804.B #15	ENSGT00940000158666 #16	ENSGT00940000155606.b #17	ENSGT00950000182837.b.a #18	ENSGT00940000155687 #19	ENSGT00390000010327 #20	ENSGT00940000159544 #21	ENSGT00940000155808 #22	ENSGT00940000165147	ENSGT00940000161726 #24	ENSGT00940000163803	ENSGT00940000162388.B	ENSGT00940000162388.A	ENSGT00940000164920 #25	ENSGT00940000162202.A ##26	ENSGT00940000162202.B ##26	ENSGT00940000162202.C #26	ENSGT00940000162121 #27	ENSGT00730000111596	ENSGT01100000263574.a	ENSGT00390000002978 #30	ENSGT00940000159366 #31	ENSGT00940000155440.d #32
Myomorpha	ANCESTRAL SPECIES	2	ENSGT00940000161665	ENSGT00940000156707 #8	ENSGT00950000183019.f.b.a #9	ENSGT00390000016495 #10	ENSGT00940000160329 #11	ENSGT00940000160653 #12	ENSGT00950000183080.a.a #13	ENSGT00940000159521 #14	ENSGT00940000153804.B #15	ENSGT00940000158666 #16	ENSGT00940000155606.b #17	ENSGT00950000182837.b.a #18	ENSGT00940000155687 #19	ENSGT00390000010327 #20	ENSGT00940000159544 #21	ENSGT00940000155808 #22	ENSGT00940000165147	ENSGT00940000161726 #24	ENSGT00940000163803	ENSGT00940000162388.B	ENSGT00940000162388.A	ENSGT00940000164920 #25	ENSGT00940000162202.A ##26	ENSGT00940000162202.B ##26	ENSGT00940000162202.C #26	ENSGT00940000162121 #27	ENSGT00730000111596	ENSGT01100000263574.a	ENSGT00390000002978 #30	ENSGT00940000159366 #31	ENSGT00940000155440.d #32
Lesser Egyptian jerboa	MODERN SPECIES	157	ENSJJAG00000023190 #7	ENSJJAG00000021738 #8	Prkag1 (ENSJJAG00000021260) #9	Ddn (ENSJJAG00000020419) #10	Wnt1 (ENSJJAG00000019856) #11	Wnt10b (ENSJJAG00000019751) #12	Arf3 (ENSJJAG00000019531) #13	Fkbp11 (ENSJJAG00000019024) #14	Ccdc65 (ENSJJAG00000018310) #15	Rnd1 (ENSJJAG00000018029) #16	Ddx23 (ENSJJAG00000018994) #17	Cacnb3 (ENSJJAG00000017876) #18	Adcy6 (ENSJJAG00000016023) #19	Tex49 (ENSJJAG00000014955) #20	Ccnt1 (ENSJJAG00000014633) #21	Kansl2 (ENSJJAG00000012644) #22	ENSJJAG00000013730 #23	Lalba (ENSJJAG00000011329) #24	ENSJJAG00000003638 #25	ENSJJAG00000001609 #26	Zfp641 (ENSJJAG00000023912) #27	ENSJJAG00000014189 #28	ENSJJAG00000023686 #29	Ccdc184 (ENSJJAG00000014181) #30	ENSJJAG00000023643 #31	Pfkm (ENSJJAG00000021525) #32	Senp1 (ENSJJAG00000015040) #33	Col2a1 (ENSJJAG00000019255) #34	ENSJJAG00000015566 #35	ENSJJAG00000013784 #36	Hdac7 (ENSJJAG00000021127) #37
Muroidea	ANCESTRAL SPECIES	31	ENSGT00940000161665	ENSGT00940000156707 #8	ENSGT00950000183019.f.b.a #9	ENSGT00390000016495 #10	ENSGT00940000160329 #11	ENSGT00940000160653 #12	ENSGT00950000183080.a.a #13	ENSGT00940000159521 #14	ENSGT00940000153804.B #15	ENSGT00940000158666 #16	ENSGT00940000155606.b #17	ENSGT00950000182837.b.a #18	ENSGT00940000155687 #19	ENSGT00390000010327 #20	ENSGT00940000159544 #21	ENSGT00940000155808 #22	ENSGT00940000165147	ENSGT00940000161726 #24	ENSGT00940000163803	ENSGT00940000162388.B	ENSGT00940000162388.A	ENSGT00940000164920 #25	ENSGT00940000162202.A ##26	ENSGT00940000162202.B ##26	ENSGT00940000162202.C #26	ENSGT00940000162121 #27	ENSGT00730000111596	ENSGT01100000263574.a.f.b	ENSGT01100000263574.a.f.a	ENSGT00390000002978 #30	ENSGT00940000159366 #31
Muroidea_A	ANCESTRAL SPECIES	9	ENSGT00940000161665	ENSGT00940000156707 #8	ENSGT00950000183019.f.b.a #9	ENSGT00390000016495 #10	ENSGT00940000160329 #11	ENSGT00940000160653 #12	ENSGT00950000183080.a.a #13	ENSGT00940000159521 #14	ENSGT00940000153804.B #15	ENSGT00940000158666 #16	ENSGT00940000155606.b #17	ENSGT00950000182837.b.a #18	ENSGT00940000155687 #19	ENSGT00390000010327 #20	ENSGT00940000159544 #21	ENSGT00940000155808 #22	ENSGT00940000165147	ENSGT00940000161726 #24	ENSGT00940000163803	ENSGT00940000162388.B	ENSGT00940000162388.A	ENSGT00940000164920 #25	ENSGT00940000162202.A ##26	ENSGT00940000162202.B ##26	ENSGT00940000162202.C #26	ENSGT00940000162121 #27	ENSGT00730000111596	ENSGT01100000263574.a.f.b	ENSGT01100000263574.a.f.a	ENSGT00390000002978 #30	ENSGT00940000159366 #31
Cricetidae	ANCESTRAL SPECIES	10	ENSGT00940000161665	ENSGT00940000156707 #8	ENSGT00950000183019.f.b.a #9	ENSGT00390000016495 #10	ENSGT00940000160329 #11	ENSGT00940000160653 #12	ENSGT00950000183080.a.a #13	ENSGT00940000159521 #14	ENSGT00940000153804.B #15	ENSGT00940000158666 #16	ENSGT00940000155606.b #17	ENSGT00950000182837.b.a #18	ENSGT00940000155687 #19	ENSGT00390000010327 #20	ENSGT00940000159544 #21	ENSGT00940000155808 #22	ENSGT00940000165147	ENSGT00940000161726 #24	ENSGT00940000163803	ENSGT00940000162388.B	ENSGT00940000162388.A	ENSGT00940000162202.A ##26	ENSGT00940000162202.B ##26	ENSGT00940000162202.C #26	ENSGT00940000162121 #27	ENSGT00730000111596	ENSGT01100000263574.a.f.b	ENSGT01100000263574.a.f.a	ENSGT00390000002978 #30	ENSGT00940000159366 #31	ENSGT00940000155440.d #32
Cricetinae	ANCESTRAL SPECIES	3	ENSGT00940000161665	ENSGT00940000156707 #8	ENSGT00950000183019.f.b.a #9	ENSGT00390000016495 #10	ENSGT00940000160329 #11	ENSGT00940000160653 #12	ENSGT00950000183080.a.a #13	ENSGT00940000159521 #14	ENSGT00940000153804.B #15	ENSGT00940000158666 #16	ENSGT00940000155606.b #17	ENSGT00950000182837.b.a #18	ENSGT00940000155687 #19	ENSGT00390000010327 #20	ENSGT00940000159544 #21	ENSGT00940000155808 #22	ENSGT00940000165147	ENSGT00940000161726 #24	ENSGT00940000163803	ENSGT00940000162388.B	ENSGT00940000162388.A	ENSGT00940000164920 #25	ENSGT00940000162202.A ##26	ENSGT00940000162202.B ##26	ENSGT00940000162121 #27	ENSGT00730000111596	ENSGT01100000263574.a.f.b	ENSGT01100000263574.a.f.a	ENSGT00390000002978 #30	ENSGT00940000159366 #31	ENSGT00940000155440.d #32
Chinese hamster chok1gshd	MODERN SPECIES	1	Rhebl1 (ENSCGRG00001005736)	Kmt2d (ENSCGRG00001004692) #8	Prkag1 (ENSCGRG00001003063) #9	Ddn (ENSCGRG00001004300) #10	Wnt1 (ENSCGRG00001003166) #11	Wnt10b (ENSCGRG00001004015) #12	Arf3 (ENSCGRG00001004437) #13	Fkbp11 (ENSCGRG00001012678) #14	Ccdc65 (ENSCGRG00001014624) #15	Rnd1 (ENSCGRG00001004988) #16	Ddx23 (ENSCGRG00001015090) #17	Cacnb3 (ENSCGRG00001007469) #18	Adcy6 (ENSCGRG00001002443) #19	Tex49 (ENSCGRG00001002641) #20	Ccnt1 (ENSCGRG00001010472) #21	Kansl2 (ENSCGRG00001007756) #22	Or11m3 (ENSCGRG00001010245)	Lalba (ENSCGRG00001004333) #24	ENSCGRG00001004394	Or8s8 (ENSCGRG00001010259)	Or8s10 (ENSCGRG00001009319)	Or8s2 (ENSCGRG00001008762) ##26	Or8s5 (ENSCGRG00001007209) ##26	Zfp641 (ENSCGRG00001008450) #27	H1f7 (ENSCGRG00001006632)	ENSCGRG00001001784	ENSCGRG00001009005	ENSCGRG00001008716	ENSCGRG00001004363	Ccdc184 (ENSCGRG00001009478) #30	ENSCGRG00001001830
Golden Hamster	MODERN SPECIES	626	ENSMAUG00000012521 #8	ENSMAUG00000012028 #8	Prkag1 (ENSMAUG00000011761) #9	Ddn (ENSMAUG00000011464) #10	Wnt1 (ENSMAUG00000012154) #11	Wnt10b (ENSMAUG00000012082) #12	Arf3 (ENSMAUG00000011928) #13	Fkbp11 (ENSMAUG00000015766) #14	Ccdc65 (ENSMAUG00000015430) #15	Rnd1 (ENSMAUG00000015221) #16	Ddx23 (ENSMAUG00000012336) #17	Cacnb3 (ENSMAUG00000012005) #18	Adcy6 (ENSMAUG00000011342) #19	Tex49 (ENSMAUG00000010854) #20	Ccnt1 (ENSMAUG00000015960) #21	Kansl2 (ENSMAUG00000015668) #22	Lalba (ENSMAUG00000013490) #24	ENSMAUG00000012783 #25	Or8s2 (ENSMAUG00000015201) ##26	Or8s16 (ENSMAUG00000011283)	Zfp641 (ENSMAUG00000010993) #27	H1f7 (ENSMAUG00000010839)	ENSMAUG00000014007	ENSMAUG00000019216	Ccdc184 (ENSMAUG00000010780) #30	Asb8 (ENSMAUG00000019139) #31	Pfkm (ENSMAUG00000016492) #32	ENSMAUG00000015838	ENSMAUG00000015983 #33	Col2a1 (ENSMAUG00000019899) #34	Tmem106c (ENSMAUG00000017478)
Cricetidae_B	ANCESTRAL SPECIES	6	ENSGT00940000161665	ENSGT00940000156707 #8	ENSGT00950000183019.f.b.a #9	ENSGT00390000016495 #10	ENSGT00940000160329 #11	ENSGT00940000160653 #12	ENSGT00950000183080.a.a #13	ENSGT00940000159521 #14	ENSGT00940000153804.B #15	ENSGT00940000158666 #16	ENSGT00940000155606.b #17	ENSGT00950000182837.b.a #18	ENSGT00940000155687 #19	ENSGT00390000010327 #20	ENSGT00940000159544 #21	ENSGT00940000155808 #22	ENSGT00940000165147	ENSGT00940000161726 #24	ENSGT00940000163803	ENSGT00940000162388.B	ENSGT00940000162388.A	ENSGT00940000162202.A ##26	ENSGT00940000162202.B ##26	ENSGT00940000162202.C #26	ENSGT00940000162121 #27	ENSGT01100000263574.a.f.b	ENSGT01100000263574.a.f.a	ENSGT00390000002978 #30	ENSGT00940000159366 #31	ENSGT00940000155440.d #32	ENSGT00940000155489.b.f #33
Prairie vole	MODERN SPECIES	2	ENSMOCG00000016455 #8	ENSMOCG00000010694 #8	Prkag1 (ENSMOCG00000014481) #9	Ddn (ENSMOCG00000016200) #10	Wnt1 (ENSMOCG00000017789) #11	Wnt10b (ENSMOCG00000021764) #12	Arf3 (ENSMOCG00000020182) #13	Fkbp11 (ENSMOCG00000021965) #14	Ccdc65 (ENSMOCG00000000518) #15	Rnd1 (ENSMOCG00000015821) #16	Ddx23 (ENSMOCG00000018987) #17	Cacnb3 (ENSMOCG00000007254) #18	Adcy6 (ENSMOCG00000013100) #19	Tex49 (ENSMOCG00000022816) #20	Ccnt1 (ENSMOCG00000012712) #21	Kansl2 (ENSMOCG00000010801) #22	Lalba (ENSMOCG00000018652) #24	ENSMOCG00000009420 #25	ENSMOCG00000017621	Zfp641 (ENSMOCG00000019174) #27	ENSMOCG00000001245	ENSMOCG00000001175	Ccdc184 (ENSMOCG00000003788) #30	Asb8 (ENSMOCG00000017776) #31	Pfkm (ENSMOCG00000021333) #32	ENSMOCG00000015383	ENSMOCG00000002706 #33	Col2a1 (ENSMOCG00000014833) #34	Tmem106c (ENSMOCG00000016714)	ENSMOCG00000013472 #36	Hdac7 (ENSMOCG00000019731) #37
Northern American deer mouse	MODERN SPECIES	12	ENSPEMG00000015247 #8	ENSPEMG00000015938 #8	Prkag1 (ENSPEMG00000015142) #9	Ddn (ENSPEMG00000010537) #10	Wnt1 (ENSPEMG00000024721) #11	Wnt10b (ENSPEMG00000015297) #12	Arf3 (ENSPEMG00000028616) #13	Fkbp11 (ENSPEMG00000009775) #14	Ccdc65 (ENSPEMG00000007520) #15	Rnd1 (ENSPEMG00000014224) #16	Ddx23 (ENSPEMG00000011305) #17	Cacnb3 (ENSPEMG00000014805) #18	Adcy6 (ENSPEMG00000009690) #19	Tex49 (ENSPEMG00000000495) #20	Ccnt1 (ENSPEMG00000016743) #21	Kansl2 (ENSPEMG00000008795) #22	Or11m3 (ENSPEMG00000024651)	Lalba (ENSPEMG00000007983) #24	ENSPEMG00000029296	Or8s8 (ENSPEMG00000030973)	Or8s10 (ENSPEMG00000027490)	ENSPEMG00000028993	Or8s2 (ENSPEMG00000026284) ##26	Or8s5 (ENSPEMG00000026513) ##26	ENSPEMG00000012906 #26	Zfp641 (ENSPEMG00000026282) #27	ENSPEMG00000030364	ENSPEMG00000028880	ENSPEMG00000026188	Ccdc184 (ENSPEMG00000014959) #30	Asb8 (ENSPEMG00000026668) #31
Murinae	ANCESTRAL SPECIES	10	ENSGT00940000161665	ENSGT00940000156707 #8	ENSGT00950000183019.f.b.a #9	ENSGT00390000016495 #10	ENSGT00940000160329 #11	ENSGT00940000160653 #12	ENSGT00950000183080.a.a #13	ENSGT00940000159521 #14	ENSGT00940000153804.B #15	ENSGT00940000158666 #16	ENSGT00940000155606.b #17	ENSGT00950000182837.b.a #18	ENSGT00940000155687 #19	ENSGT00390000010327 #20	ENSGT00940000159544 #21	ENSGT00940000155808 #22	ENSGT00940000165147	ENSGT00940000161726 #24	ENSGT00940000163803	ENSGT00940000162388.B	ENSGT00940000162388.A	ENSGT00940000164920 #25	ENSGT00940000162202.A ##26	ENSGT00940000162202.B ##26	ENSGT00940000162202.C #26	ENSGT00940000162121 #27	ENSGT00730000111596	ENSGT01100000263574.a.f.a	ENSGT00390000002978 #30	ENSGT00940000159366 #31	ENSGT00940000155440.d #32
Mus	ANCESTRAL SPECIES	11	ENSGT00940000161665	ENSGT00940000156707 #8	ENSGT00950000183019.f.b.a #9	ENSGT00390000016495 #10	ENSGT00940000160329 #11	ENSGT00940000160653 #12	ENSGT00950000183080.a.a #13	ENSGT00940000159521 #14	ENSGT00940000153804.B #15	ENSGT00940000158666 #16	ENSGT00940000155606.b #17	ENSGT00950000182837.b.a #18	ENSGT00940000155687 #19	ENSGT00390000010327 #20	ENSGT00940000159544 #21	ENSGT00940000155808 #22	ENSGT00940000165147	ENSGT00940000161726 #24	ENSGT00940000163803	ENSGT00940000162388.B	ENSGT00940000162388.A	ENSGT00940000164920 #25	ENSGT00940000162202.A ##26	ENSGT00940000162202.B ##26	ENSGT00940000162121 #27	ENSGT00730000111596	ENSGT01100000263574.a.f.a.f	ENSGT01100000263574.a.f.a.e.a	ENSGT01100000263574.a.f.a.e.b	ENSGT00390000002978 #30	ENSGT00940000159366 #31
Mus_A	ANCESTRAL SPECIES	13	ENSGT00940000161665	ENSGT00940000156707 #8	ENSGT00950000183019.f.b.a #9	ENSGT00390000016495 #10	ENSGT00940000160329 #11	ENSGT00940000160653 #12	ENSGT00950000183080.a.a #13	ENSGT00940000159521 #14	ENSGT00940000153804.B #15	ENSGT00940000158666 #16	ENSGT00940000155606.b #17	ENSGT00950000182837.b.a #18	ENSGT00940000155687 #19	ENSGT00390000010327 #20	ENSGT00940000159544 #21	ENSGT00940000155808 #22	ENSGT00940000165147	ENSGT00940000161726 #24	ENSGT00940000163803	ENSGT00940000162388.B	ENSGT00940000162388.A	ENSGT00940000164920 #25	ENSGT00940000162202.A ##26	ENSGT00940000162202.B ##26	ENSGT00940000162121 #27	ENSGT00730000111596	ENSGT01100000263574.a.f.a.e.b.a.a	ENSGT01100000263574.a.f.a.f	ENSGT01100000263574.a.f.a.e.b.a.b	ENSGT00390000002978 #30	ENSGT00940000159366 #31
Mus_B	ANCESTRAL SPECIES	12	ENSGT00940000161665	ENSGT00940000156707 #8	ENSGT00950000183019.f.b.a #9	ENSGT00390000016495 #10	ENSGT00940000160329 #11	ENSGT00940000160653 #12	ENSGT00950000183080.a.a #13	ENSGT00940000159521 #14	ENSGT00940000153804.B #15	ENSGT00940000158666 #16	ENSGT00940000155606.b #17	ENSGT00950000182837.b.a #18	ENSGT00940000155687 #19	ENSGT00390000010327 #20	ENSGT00940000159544 #21	ENSGT00940000155808 #22	ENSGT00940000165147	ENSGT00940000161726 #24	ENSGT00940000163803	ENSGT00940000162388.B	ENSGT00940000162388.A	ENSGT00940000164920 #25	ENSGT00940000162202.A ##26	ENSGT00940000162202.B ##26	ENSGT00940000159881.b	ENSGT00940000162121 #27	ENSGT00730000111596	ENSGT01100000263574.a.f.a.f	ENSGT01100000263574.a.f.a.e.b.a.b	ENSGT00390000002978 #30	ENSGT00940000159366 #31
Mouse	MODERN SPECIES	6	Rhebl1 (ENSMUSG00000023755)	Kmt2d (ENSMUSG00000048154) #8	Prkag1 (ENSMUSG00000067713) #9	Ddn (ENSMUSG00000059213) #10	Wnt1 (ENSMUSG00000022997) #11	Wnt10b (ENSMUSG00000022996) #12	Arf3 (ENSMUSG00000051853) #13	Fkbp11 (ENSMUSG00000003355) #14	Ccdc65 (ENSMUSG00000003354) #15	Rnd1 (ENSMUSG00000054855) #16	Ddx23 (ENSMUSG00000003360) #17	Cacnb3 (ENSMUSG00000003352) #18	Adcy6 (ENSMUSG00000022994) #19	Tex49 (ENSMUSG00000022993) #20	Ccnt1 (ENSMUSG00000011960) #21	Kansl2 (ENSMUSG00000022992) #22	Or11m3 (ENSMUSG00000054036)	Lalba (ENSMUSG00000022991) #24	OR5BS1P (ENSMUSG00000108728)	Or8s8 (ENSMUSG00000032987)	Or8s10 (ENSMUSG00000063780)	Or8s2 (ENSMUSG00000056184) ##26	Or8s5 (ENSMUSG00000051793) ##26	Or8s16 (ENSMUSG00000062037)	Zfp641 (ENSMUSG00000022987) #27	H1f7 (ENSMUSG00000048077)	Or10ad1b (ENSMUSG00000059460)	Or10ad1 (ENSMUSG00000090129)	Gm44579 (ENSMUSG00000108748)	Or10ad1c (ENSMUSG00000075427)	Ccdc184 (ENSMUSG00000029875) #30
Mus_C	ANCESTRAL SPECIES	17	ENSGT00940000161665	ENSGT00940000156707 #8	ENSGT00950000183019.f.b.a #9	ENSGT00390000016495 #10	ENSGT00940000160329 #11	ENSGT00940000160653 #12	ENSGT00950000183080.a.a #13	ENSGT00940000159521 #14	ENSGT00940000153804.B #15	ENSGT00940000158666 #16	ENSGT00940000155606.b #17	ENSGT00950000182837.b.a #18	ENSGT00940000155687 #19	ENSGT00390000010327 #20	ENSGT00940000159544 #21	ENSGT00940000155808 #22	ENSGT00940000165147	ENSGT00940000161726 #24	ENSGT00940000163803	ENSGT00940000162388.B	ENSGT00940000162388.A	ENSGT00940000164920 #25	ENSGT00940000162202.A ##26	ENSGT00940000162202.B ##26	ENSGT00940000159881.b	ENSGT00940000162121 #27	ENSGT00730000111596	ENSGT01100000263574.a.f.a.f	ENSGT01100000263574.a.f.a.e.b.a.b	ENSGT00390000002978 #30	ENSGT00940000159366 #31
spretus	MODERN SPECIES	6	Rhebl1 (MGP_SPRETEiJ_G0021147)	Kmt2d (MGP_SPRETEiJ_G0021146) #8	Prkag1 (MGP_SPRETEiJ_G0021145) #9	Ddn (MGP_SPRETEiJ_G0021144) #10	Wnt1 (MGP_SPRETEiJ_G0021143) #11	Wnt10b (MGP_SPRETEiJ_G0021142) #12	Arf3 (MGP_SPRETEiJ_G0021141) #13	Fkbp11 (MGP_SPRETEiJ_G0021140) #14	Ccdc65 (MGP_SPRETEiJ_G0021139) #15	Rnd1 (MGP_SPRETEiJ_G0021138) #16	Ddx23 (MGP_SPRETEiJ_G0021137) #17	Cacnb3 (MGP_SPRETEiJ_G0021136) #18	Adcy6 (MGP_SPRETEiJ_G0021135) #19	Tex49 (MGP_SPRETEiJ_G0021134) #20	Ccnt1 (MGP_SPRETEiJ_G0021133) #21	Kansl2 (MGP_SPRETEiJ_G0021132) #22	Or11m3 (MGP_SPRETEiJ_G0021131)	Lalba (MGP_SPRETEiJ_G0021130) #24	Or8s8 (MGP_SPRETEiJ_G0021129)	Or8s10 (MGP_SPRETEiJ_G0021128)	MGP_SPRETEiJ_G0021127 #25	Or8s2 (MGP_SPRETEiJ_G0021126) ##26	Or8s5 (MGP_SPRETEiJ_G0021125) ##26	MGP_SPRETEiJ_G0021124	Zfp641 (MGP_SPRETEiJ_G0021123) #27	H1f7 (MGP_SPRETEiJ_G0021122)	MGP_SPRETEiJ_G0021121	MGP_SPRETEiJ_G0021120	Ccdc184 (MGP_SPRETEiJ_G0021119) #30	Asb8 (MGP_SPRETEiJ_G0021118) #31	Pfkm (MGP_SPRETEiJ_G0021117) #32
Steppe mouse	MODERN SPECIES	3092	ENSMSIG00000002356	Lmbr1l (ENSMSIG00000002200)	Dhh (ENSMSIG00000002172)	ENSMSIG00000002088	Prkag1 (ENSMSIG00000001568) #9	Ddn (ENSMSIG00000001553) #10	Wnt1 (ENSMSIG00000001511) #11	Wnt10b (ENSMSIG00000001386) #12	Arf3 (ENSMSIG00000001320) #13	Ccdc65 (ENSMSIG00000001269) #15	Rnd1 (ENSMSIG00000001241) #16	Ddx23 (ENSMSIG00000001169) #17	Cacnb3 (ENSMSIG00000000901) #18	Adcy6 (ENSMSIG00000000695) #19	Ccnt1 (ENSMSIG00000000619) #21	Kansl2 (ENSMSIG00000000531) #22	Or11m3 (ENSMSIG00000000513)	Lalba (ENSMSIG00000000500) #24	ENSMSIG00000000476	Or8s8 (ENSMSIG00000000461)	Or8s2 (ENSMSIG00000000448) ##26	Or8s5 (ENSMSIG00000000437) ##26	ENSMSIG00000000424	ENSMSIG00000000412	Zfp641 (ENSMSIG00000000347) #27	H1f7 (ENSMSIG00000000314)	Or10ad1b (ENSMSIG00000000298)	Ccdc184 (ENSMSIG00000000285) #30	Asb8 (ENSMSIG00000000221) #31	Pfkm (ENSMSIG00000000111) #32	Senp1 (ENSMSIG00000030788) #33
Ryukyu mouse	MODERN SPECIES	6	Rhebl1 (MGP_CAROLIEiJ_G0020250)	Kmt2d (MGP_CAROLIEiJ_G0020249) #8	Prkag1 (MGP_CAROLIEiJ_G0020248) #9	Ddn (MGP_CAROLIEiJ_G0020247) #10	Wnt1 (MGP_CAROLIEiJ_G0020246) #11	Wnt10b (MGP_CAROLIEiJ_G0020245) #12	Arf3 (MGP_CAROLIEiJ_G0020244) #13	Fkbp11 (MGP_CAROLIEiJ_G0020243) #14	Ccdc65 (MGP_CAROLIEiJ_G0020242) #15	Rnd1 (MGP_CAROLIEiJ_G0020241) #16	Ddx23 (MGP_CAROLIEiJ_G0020240) #17	Cacnb3 (MGP_CAROLIEiJ_G0020239) #18	Adcy6 (MGP_CAROLIEiJ_G0020238) #19	Tex49 (MGP_CAROLIEiJ_G0020237) #20	Ccnt1 (MGP_CAROLIEiJ_G0020236) #21	Kansl2 (MGP_CAROLIEiJ_G0020235) #22	Or11m3 (MGP_CAROLIEiJ_G0020234)	Lalba (MGP_CAROLIEiJ_G0020233) #24	Or8s8 (MGP_CAROLIEiJ_G0020232)	Or8s10 (MGP_CAROLIEiJ_G0020231)	MGP_CAROLIEiJ_G0020230 #25	Or8s2 (MGP_CAROLIEiJ_G0020229) ##26	Or8s5 (MGP_CAROLIEiJ_G0020228) ##26	Zfp641 (MGP_CAROLIEiJ_G0020227) #27	H1f7 (MGP_CAROLIEiJ_G0020226)	MGP_CAROLIEiJ_G0020225	MGP_CAROLIEiJ_G0020224	Ccdc184 (MGP_CAROLIEiJ_G0020223) #30	Asb8 (MGP_CAROLIEiJ_G0020222) #31	Pfkm (MGP_CAROLIEiJ_G0020221) #32	Senp1 (MGP_CAROLIEiJ_G0020220) #33
Shrew mouse	MODERN SPECIES	8	Rhebl1 (MGP_PahariEiJ_G0020253)	Kmt2d (MGP_PahariEiJ_G0020252) #8	Prkag1 (MGP_PahariEiJ_G0020251) #9	Ddn (MGP_PahariEiJ_G0020250) #10	Wnt1 (MGP_PahariEiJ_G0020249) #11	Wnt10b (MGP_PahariEiJ_G0020248) #12	Arf3 (MGP_PahariEiJ_G0020247) #13	Fkbp11 (MGP_PahariEiJ_G0020246) #14	Ccdc65 (MGP_PahariEiJ_G0020245) #15	Rnd1 (MGP_PahariEiJ_G0020244) #16	Ddx23 (MGP_PahariEiJ_G0020243) #17	Cacnb3 (MGP_PahariEiJ_G0020242) #18	Adcy6 (MGP_PahariEiJ_G0020241) #19	Tex49 (MGP_PahariEiJ_G0020240) #20	Ccnt1 (MGP_PahariEiJ_G0020239) #21	Kansl2 (MGP_PahariEiJ_G0020238) #22	Or11m3 (MGP_PahariEiJ_G0020237)	Lalba (MGP_PahariEiJ_G0020236) #24	Or8s8 (MGP_PahariEiJ_G0020235)	Or8s10 (MGP_PahariEiJ_G0020234)	MGP_PahariEiJ_G0020233 #25	Or8s2 (MGP_PahariEiJ_G0020232) ##26	Or8s5 (MGP_PahariEiJ_G0020231) ##26	Zfp641 (MGP_PahariEiJ_G0020230) #27	H1f7 (MGP_PahariEiJ_G0020229)	MGP_PahariEiJ_G0020228	MGP_PahariEiJ_G0020227	Ccdc184 (MGP_PahariEiJ_G0020226) #30	Asb8 (MGP_PahariEiJ_G0020225) #31	Pfkm (MGP_PahariEiJ_G0020224) #32	Senp1 (MGP_PahariEiJ_G0020223) #33
Rat	DUPLICATION
Rat	MODERN SPECIES	17	Rhebl1 (ENSRNOG00000054385)	Prkag1 (ENSRNOG00000070180) #9	Prkag1 (ENSRNOG00000061499) #8	Ddn (ENSRNOG00000059605) #10	Wnt1 (ENSRNOG00000061818) #11	Wnt10b (ENSRNOG00000061238) #12	Arf3 (ENSRNOG00000054775) #13	Fkbp11 (ENSRNOG00000070637) #14	Ccdc65 (ENSRNOG00000058916) #15	Rnd1 (ENSRNOG00000059857) #16	Ddx23 (ENSRNOG00000060154) #17	Cacnb3 (ENSRNOG00000054274) #18	Adcy6 (ENSRNOG00000054757) #19	Tex49 (ENSRNOG00000057264) #20	Ccnt1 (ENSRNOG00000053054) #21	Kansl2 (ENSRNOG00000060185) #22	Or11m3 (ENSRNOG00000031503)	Lalba (ENSRNOG00000010811) #24	ENSRNOG00000062462	Or8s8 (ENSRNOG00000070632)	Or8s10 (ENSRNOG00000067109)	Or8s2 (ENSRNOG00000033022) ##26	Or8s5 (ENSRNOG00000064461) ##26	Or8s16 (ENSRNOG00000067164) #26	Zfp641 (ENSRNOG00000032447) #27	H1f7 (ENSRNOG00000029545)	Olr1877 (ENSRNOG00000070612)	Olfr287 (ENSRNOG00000066134)	Or10ad1 (ENSRNOG00000064488)	Ccdc184 (ENSRNOG00000021945) #30	Asb8 (ENSRNOG00000010099) #31
Rat	MODERN SPECIES	5	Ddx56 (ENSRNOG00000004670)	Npc1l1 (ENSRNOG00000049955)	Nudcd3 (ENSRNOG00000056148)	Camk2b (ENSRNOG00000052080)	Ykt6 (ENSRNOG00000014785)	Gck (ENSRNOG00000061527)	Myl7 (ENSRNOG00000014409)	Pold2 (ENSRNOG00000014098)	Aebp1 (ENSRNOG00000013720)	Polm (ENSRNOG00000013647)	Pgam2 (ENSRNOG00000013532)	Dbnl (ENSRNOG00000012378)	Urgcp (ENSRNOG00000012184)	Mrps24 (ENSRNOG00000011979)	ENSRNOG00000069799	AC136588.2 (ENSRNOG00000030988) #22	Ankrd36 (ENSRNOG00000056767)	Ccdc117 (ENSRNOG00000010706)	Xbp1 (ENSRNOG00000010298)	Znrf3 (ENSRNOG00000067305)	Kremen1 (ENSRNOG00000051487)	Emid1 (ENSRNOG00000033575)	Rhbdd3 (ENSRNOG00000027032)	Ewsr1 (ENSRNOG00000009437)	Rasl10a (ENSRNOG00000008951)	Gas2l1 (ENSRNOG00000009040)	Ap1b1 (ENSRNOG00000008786)	Nefh (ENSRNOG00000008716)	Thoc5 (ENSRNOG00000008456)	Nipsnap1 (ENSRNOG00000008374)	Nf2 (ENSRNOG00000007948)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1666	ENSNGAG00000012838 #8	ENSNGAG00000012125 #8	Prkag1 (ENSNGAG00000012811) #9	Ddn (ENSNGAG00000008326) #10	Wnt1 (ENSNGAG00000007571) #11	Wnt10b (ENSNGAG00000004862) #12	Arf3 (ENSNGAG00000015800) #13	ENSNGAG00000015440 #14	Ccdc65 (ENSNGAG00000008161) #15	Rnd1 (ENSNGAG00000001259) #16	Ddx23 (ENSNGAG00000019018) #17	Cacnb3 (ENSNGAG00000017756) #18	Adcy6 (ENSNGAG00000010902) #19	Tex49 (ENSNGAG00000008742) #20	Ccnt1 (ENSNGAG00000004672) #21	Kansl2 (ENSNGAG00000001029) #22	Or11m3 (ENSNGAG00000018584)	Lalba (ENSNGAG00000019393) #24	ENSNGAG00000014255 #25
Kangaroo rat	MODERN SPECIES	361	Rhebl1 (ENSDORG00000006513)	ENSDORG00000027776 #8	ENSDORG00000024758 #8	Prkag1 (ENSDORG00000006505) #9	Ddn (ENSDORG00000028862) #10	Wnt1 (ENSDORG00000007735) #11	Wnt10b (ENSDORG00000010403) #12	Arf3 (ENSDORG00000024681) #13	Ccdc65 (ENSDORG00000012748) #15	Rnd1 (ENSDORG00000023400) #16	Ddx23 (ENSDORG00000012659) #17	Cacnb3 (ENSDORG00000012657) #18	Adcy6 (ENSDORG00000005171) #19	Tex49 (ENSDORG00000023756) #20	Ccnt1 (ENSDORG00000002854) #21	Kansl2 (ENSDORG00000001180) #22	Lalba (ENSDORG00000009838) #24	ENSDORG00000002609 #25	ENSDORG00000025213 #26	Zfp641 (ENSDORG00000011810) #27	ENSDORG00000027881	ENSDORG00000027511	Ccdc184 (ENSDORG00000000096) #30	Asb8 (ENSDORG00000027268) #31	Pfkm (ENSDORG00000000094) #32	Senp1 (ENSDORG00000000092) #33	Col2a1 (ENSDORG00000012020) #34	Tmem106c (ENSDORG00000012018)	ENSDORG00000027162 #36	Hdac7 (ENSDORG00000016267) #37	Slc48a1 (ENSDORG00000026104)
Rodentia_A	ANCESTRAL SPECIES	4	ENSGT00940000161665	ENSGT00940000156707 #8	ENSGT00950000183019.f.b.a #9	ENSGT00390000016495 #10	ENSGT00940000160329 #11	ENSGT00940000160653 #12	ENSGT00950000183080.a.a #13	ENSGT00940000159521 #14	ENSGT00940000153804.B #15	ENSGT00940000158666 #16	ENSGT00940000155606.b #17	ENSGT00950000182837.b.a #18	ENSGT00940000155687 #19	ENSGT00390000010327 #20	ENSGT00940000159544 #21	ENSGT00940000155808 #22	ENSGT00940000165147	ENSGT00940000161726 #24	ENSGT00940000163803	ENSGT00940000162388.B	ENSGT00940000159881.a.a.b	ENSGT00390000014843	ENSGT00940000162202.A ##26	ENSGT00940000162202.B ##26	ENSGT00940000162202.C #26	ENSGT00940000162121 #27	ENSGT00730000111596	ENSGT01100000263574.a	ENSGT00390000002978 #30	ENSGT00940000159366 #31	ENSGT00940000155440.d #32
Sciuridae	ANCESTRAL SPECIES	15	ENSGT00940000161665	ENSGT00940000156707 #8	ENSGT00950000183019.f.b.a #9	ENSGT00390000016495 #10	ENSGT00940000160329 #11	ENSGT00940000160653 #12	ENSGT00950000183080.a.a #13	ENSGT00940000159521 #14	ENSGT00940000153804.B #15	ENSGT00940000158666 #16	ENSGT00940000155606.b #17	ENSGT00950000182837.b.a #18	ENSGT00940000155687 #19	ENSGT00390000010327 #20	ENSGT00940000159544 #21	ENSGT00940000155808 #22	ENSGT00940000165147	ENSGT00940000161726 #24	ENSGT00940000163803	ENSGT00940000162388.B	ENSGT00390000014843	ENSGT00940000162202.A ##26	ENSGT00940000162202.B ##26	ENSGT00940000162202.C #26	ENSGT00940000162121 #27	ENSGT00730000111596	ENSGT01100000263574.a	ENSGT00390000002978 #30	ENSGT00940000159366 #31	ENSGT00940000155440.d #32	ENSGT00940000155489.b.f #33
Marmotini	ANCESTRAL SPECIES	19	ENSGT00940000161665	ENSGT00940000156707 #8	ENSGT00950000183019.f.b.a #9	ENSGT00390000016495 #10	ENSGT00940000160329 #11	ENSGT00940000160653 #12	ENSGT00950000183080.a.a #13	ENSGT00940000159521 #14	ENSGT00940000153804.B #15	ENSGT00940000158666 #16	ENSGT00940000155606.b #17	ENSGT00950000182837.b.a #18	ENSGT00940000155687 #19	ENSGT00390000010327 #20	ENSGT00940000159544 #21	ENSGT00940000155808 #22	ENSGT00940000165147	ENSGT00940000161726 #24	ENSGT00940000163803	ENSGT00940000162388.B	ENSGT00940000159881.a.b.a	ENSGT00940000162202.A ##26	ENSGT00940000162202.B ##26	ENSGT00940000162202.C #26	ENSGT00940000162121 #27	ENSGT00730000111596	ENSGT01100000263574.a.g	ENSGT01100000263574.a.h	ENSGT00390000002978 #30	ENSGT00940000159366 #31	ENSGT00940000155440.d #32
Marmotini_b	ANCESTRAL SPECIES	11	ENSGT00940000161665	ENSGT00940000156707 #8	ENSGT00950000183019.f.b.a #9	ENSGT00390000016495 #10	ENSGT00940000160329 #11	ENSGT00940000160653 #12	ENSGT00950000183080.a.a #13	ENSGT00940000159521 #14	ENSGT00940000153804.B #15	ENSGT00940000158666 #16	ENSGT00940000155606.b #17	ENSGT00950000182837.b.a #18	ENSGT00940000155687 #19	ENSGT00390000010327 #20	ENSGT00940000159544 #21	ENSGT00940000155808 #22	ENSGT00940000165147	ENSGT00940000161726 #24	ENSGT00940000163803	ENSGT00940000162388.B	ENSGT00940000159881.a.b.a	ENSGT00940000162202.A ##26	ENSGT00940000162202.B ##26	ENSGT00940000162202.C #26	ENSGT00940000162121 #27	ENSGT00730000111596	ENSGT01100000263574.a.g	ENSGT01100000263574.a.h	ENSGT00390000002978 #30	ENSGT00940000159366 #31	ENSGT00940000155440.d #32
Arctic ground squirrel	MODERN SPECIES	348	DHH (ENSUPAG00010009573)	RHEBL1 (ENSUPAG00010009539)	PRKAG1 (ENSUPAG00010009337) #9	DDN (ENSUPAG00010009325) #10	WNT1 (ENSUPAG00010009320) #11	WNT10B (ENSUPAG00010009270) #12	ARF3 (ENSUPAG00010009256) #13	FKBP11 (ENSUPAG00010009234) #14	CCDC65 (ENSUPAG00010009212) #15	RND1 (ENSUPAG00010009175) #16	DDX23 (ENSUPAG00010009132) #17	CACNB3 (ENSUPAG00010008993) #18	ADCY6 (ENSUPAG00010008904) #19	TEX49 (ENSUPAG00010008891) #20	CCNT1 (ENSUPAG00010008871) #21	KANSL2 (ENSUPAG00010008805) #22	ENSUPAG00010008799	LALBA (ENSUPAG00010008774) #24	OR5BS1P (ENSUPAG00010008767)
Squirrel	MODERN SPECIES	112	RHEBL1 (ENSSTOG00000003967)	KMT2D (ENSSTOG00000003904) #8	PRKAG1 (ENSSTOG00000014648) #9	DDN (ENSSTOG00000028408) #10	WNT1 (ENSSTOG00000003902) #11	WNT10B (ENSSTOG00000004303) #12	ARF3 (ENSSTOG00000004295) #13	FKBP11 (ENSSTOG00000023089) #14	CCDC65 (ENSSTOG00000004267) #15	RND1 (ENSSTOG00000004257) #16	DDX23 (ENSSTOG00000004219) #17	CACNB3 (ENSSTOG00000004199) #18	ADCY6 (ENSSTOG00000004149) #19	TEX49 (ENSSTOG00000004134) #20	CCNT1 (ENSSTOG00000021508) #21	KANSL2 (ENSSTOG00000004118) #22	ENSSTOG00000019743	LALBA (ENSSTOG00000033863) #24	ENSSTOG00000032648	ENSSTOG00000033401	ENSSTOG00000005852 #25	ENSSTOG00000033341 #26	ZNF641 (ENSSTOG00000001970) #27	OR10AD1 (ENSSTOG00000001963)	CCDC184 (ENSSTOG00000001957) #30	ASB8 (ENSSTOG00000024076) #31	PFKM (ENSSTOG00000001938) #32	SENP1 (ENSSTOG00000001924) #33	COL2A1 (ENSSTOG00000001893) #34	ENSSTOG00000033063	VDR (ENSSTOG00000026741) #36
Alpin marmot	MODERN SPECIES	34	DHH (ENSMMMG00000023054)	RHEBL1 (ENSMMMG00000023043)	ENSMMMG00000023038 #8	ENSMMMG00000023022 #8	ENSMMMG00000023013 #9	DDN (ENSMMMG00000023006) #10	WNT10B (ENSMMMG00000022992) #12	FKBP11 (ENSMMMG00000022980) #14	CCDC65 (ENSMMMG00000022974) #15	RND1 (ENSMMMG00000022971) #16	DDX23 (ENSMMMG00000022958) #17	CACNB3 (ENSMMMG00000022935) #18	ADCY6 (ENSMMMG00000022920) #19	TEX49 (ENSMMMG00000022917) #20	CCNT1 (ENSMMMG00000022910) #21	KANSL2 (ENSMMMG00000022904) #22	LALBA (ENSMMMG00000022893) #24	OR5BS1P (ENSMMMG00000022891)	ENSMMMG00000022889	ENSMMMG00000022886	ENSMMMG00000022885 ##26	ENSMMMG00000022881 ##26	ENSMMMG00000022878 #26	ZNF641 (ENSMMMG00000022873) #27	H1-7 (ENSMMMG00000022871)	ENSMMMG00000022868	ENSMMMG00000022866	CCDC184 (ENSMMMG00000022863) #30	ASB8 (ENSMMMG00000022857) #31	PFKM (ENSMMMG00000022833) #32	SENP1 (ENSMMMG00000022823) #33
Eurasian red squirrel	MODERN SPECIES	14	ENSSVLG00005013789 #8	ENSSVLG00005013748 #8	PRKAG1 (ENSSVLG00005013661) #9	DDN (ENSSVLG00005013335) #10	WNT1 (ENSSVLG00005013249) #11	WNT10B (ENSSVLG00005013159) #12	ARF3 (ENSSVLG00005012987) #13	FKBP11 (ENSSVLG00005012794) #14	CCDC65 (ENSSVLG00005012567) #15	RND1 (ENSSVLG00005012510) #16	DDX23 (ENSSVLG00005012479) #17	CACNB3 (ENSSVLG00005012131) #18	ADCY6 (ENSSVLG00005011914) #19	TEX49 (ENSSVLG00005011832) #20	CCNT1 (ENSSVLG00005011525) #21	KANSL2 (ENSSVLG00005011410) #22	ENSSVLG00005011395	ENSSVLG00005011295	LALBA (ENSSVLG00005011187) #24	OR5BS1P (ENSSVLG00005011139)	C12orf54 (ENSSVLG00005011007)	ENSSVLG00005010951 ##26	ZNF641 (ENSSVLG00005010861) #27	H1-7 (ENSSVLG00005010817)	OR10AD1 (ENSSVLG00005010756)	CCDC184 (ENSSVLG00005010675) #30	ASB8 (ENSSVLG00005010618) #31	PFKM (ENSSVLG00005010346) #32	SENP1 (ENSSVLG00005010219) #33	COL2A1 (ENSSVLG00005009560) #34	TMEM106C (ENSSVLG00005009433)
Hystricomorpha	ANCESTRAL SPECIES	9	ENSGT00940000161665	ENSGT00940000156707 #8	ENSGT00950000183019.f.b.a #9	ENSGT00390000016495 #10	ENSGT00940000160329 #11	ENSGT00940000160653 #12	ENSGT00950000183080.a.a #13	ENSGT00940000159521 #14	ENSGT00940000153804.B #15	ENSGT00940000158666 #16	ENSGT00940000155606.b #17	ENSGT00950000182837.b.a #18	ENSGT00940000155687 #19	ENSGT00390000010327 #20	ENSGT00940000159544 #21	ENSGT00940000155808 #22	ENSGT00940000165147	ENSGT00940000161726 #24	ENSGT00940000163803	ENSGT00940000162388.B	ENSGT00940000159881.a.a.b	ENSGT00390000014843	ENSGT00940000162202.A ##26	ENSGT00940000162202.B ##26	ENSGT00940000162121 #27	ENSGT00730000111596	ENSGT01100000263574.a	ENSGT00390000002978 #30	ENSGT00940000159366 #31	ENSGT00940000155440.d #32	ENSGT00940000155489.b.f #33
Hystricomorpha_a	ANCESTRAL SPECIES	7	ENSGT00940000161665	ENSGT00940000156707 #8	ENSGT00950000183019.f.b.a #9	ENSGT00390000016495 #10	ENSGT00940000160329 #11	ENSGT00940000160653 #12	ENSGT00950000183080.a.a #13	ENSGT00940000159521 #14	ENSGT00940000153804.B #15	ENSGT00940000158666 #16	ENSGT00940000155606.b #17	ENSGT00950000182837.b.a #18	ENSGT00940000155687 #19	ENSGT00390000010327 #20	ENSGT00940000159544 #21	ENSGT00940000155808 #22	ENSGT00940000165147	ENSGT00940000161726 #24	ENSGT00940000163803	ENSGT00940000162388.B	ENSGT00940000159881.a.a.b	ENSGT00940000164920 #25	ENSGT00390000014843	ENSGT00940000162202.A ##26	ENSGT00940000162202.B ##26	ENSGT00940000162121 #27	ENSGT01100000263574.a	ENSGT00390000002978 #30	ENSGT00940000159366 #31	ENSGT00940000155440.d #32	ENSGT00940000155489.b.f #33
Hystricomorpha_b	DUPLICATION
Hystricomorpha_b	ANCESTRAL SPECIES	78	ENSGT00940000161665	ENSGT00940000156707 #8	ENSGT00950000183019.f.b.a #9	ENSGT00390000016495 #10	ENSGT00940000160329 #11	ENSGT00940000160653 #12	ENSGT00950000183080.a.a #13	ENSGT00940000159521 #14	ENSGT00940000153804.B #15	ENSGT00940000158666 #16	ENSGT00940000155606.b #17	ENSGT00950000182837.b.a #18	ENSGT00940000155687 #19	ENSGT00390000010327 #20	ENSGT00940000159544 #21	ENSGT00940000155808.c #22	ENSGT00940000161726 #24	ENSGT00940000164920 #25	ENSGT00390000014843	ENSGT00940000162202.A ##26	ENSGT00940000162202.B ##26	ENSGT00940000162121 #27	ENSGT01100000263574.a	ENSGT00390000002978 #30	ENSGT00940000159366 #31	ENSGT00940000155440.d #32	ENSGT00940000155489.b.f #33	ENSGT00940000155224 #34	ENSGT00940000161281	ENSGT00940000155473 #36	ENSGT00940000159065 #37
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	163	ENSODEG00000006647	ENSODEG00000005907	ENSODEG00000006393	NUFIP1 (ENSODEG00000006473)	ENSODEG00000005705	ENSODEG00000006384	SERP2 (ENSODEG00000007267)	ENSODEG00000005627	LACC1 (ENSODEG00000005776)	CCDC122 (ENSODEG00000005141)	ENOX1 (ENSODEG00000005302)	ENSODEG00000019241	ENSODEG00000006181	FAM216B (ENSODEG00000005625)	TNFSF11 (ENSODEG00000006356)	ENSODEG00000006486 #22	ENSODEG00000006660	ENSODEG00000006233	SHMT1 (ENSODEG00000007205)	SMCR8 (ENSODEG00000007558)	ENSODEG00000005229	ENSODEG00000005602	FLII (ENSODEG00000007385)	LLGL1 (ENSODEG00000006178)	ALKBH5 (ENSODEG00000005760)	MYO15A (ENSODEG00000006663)	DRG2 (ENSODEG00000006901)	GID4 (ENSODEG00000006263)	ATPAF2 (ENSODEG00000006425)	DRC3 (ENSODEG00000006302)	TOM1L2 (ENSODEG00000006067)
Degu	MODERN SPECIES	141	ENSODEG00000004064 #8	ENSODEG00000004046 #9	DDN (ENSODEG00000004034) #10	WNT1 (ENSODEG00000004027) #11	WNT10B (ENSODEG00000004020) #12	ARF3 (ENSODEG00000004009) #13	FKBP11 (ENSODEG00000003672) #14	CCDC65 (ENSODEG00000003640) #15	RND1 (ENSODEG00000003618) #16	DDX23 (ENSODEG00000003592) #17	CACNB3 (ENSODEG00000003562) #18	ADCY6 (ENSODEG00000003474) #19	ENSODEG00000003445	TEX49 (ENSODEG00000003431) #20	ENSODEG00000003425 #21	ENSODEG00000003381 #22	LALBA (ENSODEG00000003342) #24	ENSODEG00000003309 #25	ENSODEG00000003293 ##26	ZNF641 (ENSODEG00000003266) #27	ENSODEG00000003244	ENSODEG00000003231	CCDC184 (ENSODEG00000019270) #30	ASB8 (ENSODEG00000004323) #31	PFKM (ENSODEG00000004315) #32	SENP1 (ENSODEG00000004260) #33	COL2A1 (ENSODEG00000004221) #34	TMEM106C (ENSODEG00000004196)	ENSODEG00000004180 #36	HDAC7 (ENSODEG00000003964) #37	SLC48A1 (ENSODEG00000003853)
Degu	MODERN SPECIES	218																ENSODEG00000002814 #22	CRHBP (ENSODEG00000002524)	S100Z (ENSODEG00000002505)	F2RL1 (ENSODEG00000002463)	ENSODEG00000003730	IQGAP2 (ENSODEG00000003459)	SV2C (ENSODEG00000003155)	POC5 (ENSODEG00000003014)	ANKDD1B (ENSODEG00000003019)	POLK (ENSODEG00000002687)	CERT1 (ENSODEG00000002483)	HMGCR (ENSODEG00000003319)	ANKRD31 (ENSODEG00000003017)	GCNT4 (ENSODEG00000018869)	ENSODEG00000002941	FAM169A (ENSODEG00000002906)
Long-tailed chinchilla	MODERN SPECIES	207	RHEBL1 (ENSCLAG00000002358)	KMT2D (ENSCLAG00000003665) #8	PRKAG1 (ENSCLAG00000003459) #9	DDN (ENSCLAG00000003076) #10	WNT1 (ENSCLAG00000002943) #11	WNT10B (ENSCLAG00000002817) #12	ARF3 (ENSCLAG00000003101) #13	ENSCLAG00000003008 #14	CCDC65 (ENSCLAG00000002533) #15	RND1 (ENSCLAG00000003094) #16	DDX23 (ENSCLAG00000002986) #17	CACNB3 (ENSCLAG00000002138) #18	ADCY6 (ENSCLAG00000003898) #19	TEX49 (ENSCLAG00000003509) #20	CCNT1 (ENSCLAG00000003430) #21	ENSCLAG00000003022 #22	LALBA (ENSCLAG00000002878) #24	ENSCLAG00000017542	C12orf54 (ENSCLAG00000002462)	ENSCLAG00000017498 ##26	ENSCLAG00000002661 ##26	ZNF641 (ENSCLAG00000002291) #27	OR10AD1 (ENSCLAG00000002006)	CCDC184 (ENSCLAG00000017612) #30	ASB8 (ENSCLAG00000003759) #31	PFKM (ENSCLAG00000003014) #32	SENP1 (ENSCLAG00000015346) #33	COL2A1 (ENSCLAG00000011781) #34	TMEM106C (ENSCLAG00000008066)	VDR (ENSCLAG00000007173) #36	HDAC7 (ENSCLAG00000003217) #37
Hystricomorpha_b	ANCESTRAL SPECIES																	ENSGT00940000155808.d #22
Long-tailed chinchilla	MODERN SPECIES	116	COCH (ENSCLAG00000011067)	SCFD1 (ENSCLAG00000012279)	G2E3 (ENSCLAG00000008721)	PRKD1 (ENSCLAG00000011245)	FOXG1 (ENSCLAG00000011906)	ENSCLAG00000015104	NOVA1 (ENSCLAG00000008948)	STXBP6 (ENSCLAG00000009408)	ENSCLAG00000010055	GZMH (ENSCLAG00000010860)	ENSCLAG00000010208	ENSCLAG00000010184	ENSCLAG00000010999	ENSCLAG00000011419	ENSCLAG00000014113	ENSCLAG00000016004 #22	SDR39U1 (ENSCLAG00000016061)	KHNYN (ENSCLAG00000014539)	CBLN3 (ENSCLAG00000012641)	NYNRIN (ENSCLAG00000009622)	NFATC4 (ENSCLAG00000011705)	RIPK3 (ENSCLAG00000013944)	ADCY4 (ENSCLAG00000015310)	LTB4R (ENSCLAG00000017796)	LTB4R2 (ENSCLAG00000009760)	NOP9 (ENSCLAG00000010413)	CIDEB (ENSCLAG00000010552)	DHRS1 (ENSCLAG00000013144)	TGM1 (ENSCLAG00000016198)	TINF2 (ENSCLAG00000011262)	GMPR2 (ENSCLAG00000012081)
Guinea pig	MODERN SPECIES	9	RHEBL1 (ENSCPOG00000002998)	KMT2D (ENSCPOG00000002973) #8	PRKAG1 (ENSCPOG00000002966) #9	DDN (ENSCPOG00000002960) #10	WNT1 (ENSCPOG00000024490) #11	WNT10B (ENSCPOG00000035034) #12	ARF3 (ENSCPOG00000040787) #13	FKBP11 (ENSCPOG00000031801) #14	CCDC65 (ENSCPOG00000003221) #15	RND1 (ENSCPOG00000003220) #16	DDX23 (ENSCPOG00000003278) #17	CACNB3 (ENSCPOG00000003277) #18	ADCY6 (ENSCPOG00000030377) #19	TEX49 (ENSCPOG00000030293) #20	CCNT1 (ENSCPOG00000038705) #21	KANSL2 (ENSCPOG00000005760) #22	ENSCPOG00000024843	Lalba (ENSCPOG00000027342) #24	ENSCPOG00000033889	ENSCPOG00000000012	ENSCPOG00000013910	ENSCPOG00000039913	ENSCPOG00000040584 #25	ENSCPOG00000012475 ##26	ENSCPOG00000036505 ##26	ZNF641 (ENSCPOG00000002770) #27	ENSCPOG00000012386	ENSCPOG00000030096	CCDC184 (ENSCPOG00000008369) #30	ASB8 (ENSCPOG00000030353) #31	PFKM (ENSCPOG00000008351) #32
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	8	ENSHGLG00000050567 #8	PRKAG1 (ENSHGLG00000003937) #9	DDN (ENSHGLG00000004151) #10	WNT1 (ENSHGLG00000004305) #11	WNT10B (ENSHGLG00000005760) #12	ARF3 (ENSHGLG00000050677) #13	FKBP11 (ENSHGLG00000008146) #14	CCDC65 (ENSHGLG00000003786) #15	ENSHGLG00000048199	RND1 (ENSHGLG00000004112) #16	DDX23 (ENSHGLG00000004292) #17	CACNB3 (ENSHGLG00000007792) #18	ADCY6 (ENSHGLG00000004662) #19	TEX49 (ENSHGLG00000007195) #20	ENSHGLG00000003361 #21	ENSHGLG00000003714 #22	ENSHGLG00000033115	ENSHGLG00000050339	ENSHGLG00000004311 #24	OR5BS1P (ENSHGLG00000042484)	ENSHGLG00000020586	ENSHGLG00000020517	ENSHGLG00000047106	ENSHGLG00000036300 ##26	ENSHGLG00000034108 ##26	ENSHGLG00000047797 #26	ZNF641 (ENSHGLG00000048585) #27	ENSHGLG00000033180	ENSHGLG00000046091	ENSHGLG00000037629	OR10AD1 (ENSHGLG00000045918)
Naked mole-rat female	MODERN SPECIES	10	SYDE2 (ENSHGLG00000005398)	ENSHGLG00000039413	C1orf52 (ENSHGLG00000004452)	BCL10 (ENSHGLG00000004369)	ENSHGLG00000041300	ENSHGLG00000033883	DDAH1 (ENSHGLG00000047230)	CCN1 (ENSHGLG00000007980)	ZNHIT6 (ENSHGLG00000007009)	ENSHGLG00000036484	COL24A1 (ENSHGLG00000004244)	ENSHGLG00000010829	CLCA2 (ENSHGLG00000015413)	CLCA1 (ENSHGLG00000015470)	ENSHGLG00000037078	ENSHGLG00000015121 #22	ENSHGLG00000012115	ENSHGLG00000035709	ENSHGLG00000007822	ENSHGLG00000006117	SELENOF (ENSHGLG00000044599)	HS2ST1 (ENSHGLG00000008512)	LMO4 (ENSHGLG00000038005)	PKN2 (ENSHGLG00000006153)	GTF2B (ENSHGLG00000045614)	CCBL2 (ENSHGLG00000004456)	GBP1 (ENSHGLG00000008509)	ENSHGLG00000006893	ENSHGLG00000005453	ENSHGLG00000007998	ENSHGLG00000009330
Lagomorpha	ANCESTRAL SPECIES	81	ENSGT00940000161665	ENSGT00940000156707 #8	ENSGT00950000183019.f.b.a.k #9	ENSGT00390000016495 #10	ENSGT00940000160329 #11	ENSGT00940000160653 #12	ENSGT00950000183080.a.a #13	ENSGT00940000159521 #14	ENSGT00940000153804.B #15	ENSGT00940000158666 #16	ENSGT00940000155606.b #17	ENSGT00950000182837.b.a #18	ENSGT00940000155687 #19	ENSGT00390000010327 #20	ENSGT00940000159544 #21	ENSGT00940000155808 #22	ENSGT00940000161726 #24	ENSGT00390000014843
Rabbit	MODERN SPECIES	15	KMT2D (ENSOCUG00000006202) #8	ENSOCUG00000008409 #9	DDN (ENSOCUG00000008404) #10	WNT1 (ENSOCUG00000026066) #11	WNT10B (ENSOCUG00000009580) #12	ARF3 (ENSOCUG00000039073) #13	ENSOCUG00000009574 #14	CCDC65 (ENSOCUG00000026025) #15	ENSOCUG00000035268 #15	RND1 (ENSOCUG00000025362) #16	DDX23 (ENSOCUG00000001414) #17	CACNB3 (ENSOCUG00000007401) #18	TEX49 (ENSOCUG00000007390) #20	ADCY6 (ENSOCUG00000007394) #19	CCNT1 (ENSOCUG00000007383) #21	KANSL2 (ENSOCUG00000007379) #22	LYZG (ENSOCUG00000015834) #24	ENSOCUG00000008989	ENSOCUG00000038424	ENSOCUG00000030065	ENSOCUG00000021510 ##26	BMP2 (ENSOCUG00000011674)	HAO1 (ENSOCUG00000011539)	TMX4 (ENSOCUG00000007336)	ENSOCUG00000038367	PLCB1 (ENSOCUG00000007339)	ENSOCUG00000030542	PLCB4 (ENSOCUG00000010755)	LAMP5 (ENSOCUG00000010766)	PAK5 (ENSOCUG00000010770)	ENSOCUG00000027526
Pika	MODERN SPECIES	1640												ENSOPRG00000007170 #17	CACNB3 (ENSOPRG00000007154) #18	ADCY6 (ENSOPRG00000007130) #19	CCNT1 (ENSOPRG00000007114) #21	ENSOPRG00000007102 #22
Tree shrew	MODERN SPECIES	5064													ADCY6 (ENSTBEG00000017125) #19	TEX49 (ENSTBEG00000017095) #20	CCNT1 (ENSTBEG00000016766) #21	KANSL2 (ENSTBEG00000016536) #22	ENSTBEG00000016481 #24	ENSTBEG00000016426